mm39_v1_chr7_+_44813363_44813448	17.3275	GCUGGUG	ENSMUST00000085374.7|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	ENSMUST00000209634.2|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm39_v1_chr13_-_54914366_54914408	17.3217	GCUGGUG	ENSMUST00000036825.14|Sncb|ENSMUSG00000034891.14|synuclein, beta
mm39_v1_chr2_+_136555364_136555412	15.6507	GCUGGUG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr10_-_81318489_81318559	11.6334	GCUGGUG	ENSMUST00000120508.8|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5	ENSMUST00000238823.2|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5	ENSMUST00000118763.8|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5
mm39_v1_chr19_+_47003111_47003137	9.93636	GCUGGUG	ENSMUST00000037636.4|Ina|ENSMUSG00000034336.4|internexin neuronal intermediate filament protein, alpha
mm39_v1_chr9_-_75518585_75518616	9.56567	GCUGGUG	ENSMUST00000098552.10|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000064433.11|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr11_-_119438569_119438585	8.74925	GCUGGUG	ENSMUST00000026670.5|Nptx1|ENSMUSG00000025582.5|neuronal pentraxin 1
mm39_v1_chr12_+_76371634_76371674	8.61868	GCUGGUG	ENSMUST00000154078.3|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5	ENSMUST00000095610.9|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5
mm39_v1_chr6_+_55428963_55429042	8.24468	GCUGGUG	ENSMUST00000070736.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000070756.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000166962.8|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1
mm39_v1_chr5_+_130477642_130477671	8.06338	GCUGGUG	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr5_-_103247920_103247954	7.91961	GCUGGUG	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr2_+_157756535_157756573	7.82766	GCUGGUG	ENSMUST00000109523.2|Vstm2l|ENSMUSG00000037843.7|V-set and transmembrane domain containing 2-like
mm39_v1_chr11_+_17001818_17001899	7.78214	GCUGGUG	ENSMUST00000058159.6|Cnrip1|ENSMUSG00000044629.6|cannabinoid receptor interacting protein 1
mm39_v1_chr11_+_7013422_7013489	7.56023	GCUGGUG	ENSMUST00000020706.5|Adcy1|ENSMUSG00000020431.6|adenylate cyclase 1
mm39_v1_chr1_+_75456173_75456348	7.54436	GCUGGUG	ENSMUST00000113575.9|Tmem198|ENSMUSG00000051703.15|transmembrane protein 198	ENSMUST00000148980.2|Tmem198|ENSMUSG00000051703.15|transmembrane protein 198	ENSMUST00000050899.7|Tmem198|ENSMUSG00000051703.15|transmembrane protein 198	ENSMUST00000187411.2|Tmem198|ENSMUSG00000051703.15|transmembrane protein 198
mm39_v1_chr3_-_107425316_107425339	7.33848	GCUGGUG	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr18_+_36098090_36098165	7.33453	GCUGGUG	ENSMUST00000176873.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000177432.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000175734.2|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2
mm39_v1_chr2_+_24944367_24944403	7.18939	GCUGGUG	ENSMUST00000100334.11|Nsmf|ENSMUSG00000006476.20|NMDA receptor synaptonuclear signaling and neuronal migration factor	ENSMUST00000152122.8|Nsmf|ENSMUSG00000006476.20|NMDA receptor synaptonuclear signaling and neuronal migration factor	ENSMUST00000116574.10|Nsmf|ENSMUSG00000006476.20|NMDA receptor synaptonuclear signaling and neuronal migration factor	ENSMUST00000006646.15|Nsmf|ENSMUSG00000006476.20|NMDA receptor synaptonuclear signaling and neuronal migration factor
mm39_v1_chr5_+_71857261_71857292	7.14205	GCUGGUG	ENSMUST00000031122.9|Gabrb1|ENSMUSG00000029212.12|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm39_v1_chr14_-_20027279_20027324	7.14126	GCUGGUG	ENSMUST00000160013.8|Gng2|ENSMUSG00000043004.14|guanine nucleotide binding protein (G protein), gamma 2
mm39_v1_chr5_-_120849992_120849992	7.07718	GCUGGUG	ENSMUST00000031607.7|Dtx1|ENSMUSG00000029603.16|deltex 1, E3 ubiquitin ligase
mm39_v1_chr11_+_116809669_116809717	7.03745	GCUGGUG	ENSMUST00000103027.10|Mgat5b|ENSMUSG00000043857.17|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm39_v1_chr3_+_107008867_107008883	7.0127	GCUGGUG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr17_+_44114894_44114932	6.92627	GCUGGUG	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr4_+_9269285_9269335	6.78044	GCUGGUG	ENSMUST00000038841.14|Clvs1|ENSMUSG00000041216.16|clavesin 1
mm39_v1_chr15_+_39061612_39061758	6.72192	GCUGGUG	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr6_-_54543446_54543474	6.68102	GCUGGUG	ENSMUST00000019268.11|Scrn1|ENSMUSG00000019124.11|secernin 1
mm39_v1_chr4_+_120711974_120712041	6.46758	GCUGGUG	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr6_-_112924205_112924239	6.46624	GCUGGUG	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr2_+_84564394_84564451	6.18816	GCUGGUG	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr7_-_37806912_37806959	6.1037	GCUGGUG	ENSMUST00000108023.10|Ccne1|ENSMUSG00000002068.17|cyclin E1
mm39_v1_chr9_-_29874401_29874437	6.10274	GCUGGUG	ENSMUST00000075069.11|Ntm|ENSMUSG00000059974.11|neurotrimin
mm39_v1_chr2_-_32243246_32243294	6.08808	GCUGGUG	ENSMUST00000201433.4|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000113352.9|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000201494.4|Dnm1|ENSMUSG00000026825.18|dynamin 1
mm39_v1_chr2_-_163760603_163760603	5.60996	GCUGGUG	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr10_+_52566616_52566651	5.60484	GCUGGUG	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chr1_+_191873078_191873130	5.57022	GCUGGUG	ENSMUST00000078470.12|Kcnh1|ENSMUSG00000058248.13|potassium voltage-gated channel, subfamily H (eag-related), member 1	ENSMUST00000110844.3|Kcnh1|ENSMUSG00000058248.13|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm39_v1_chr11_-_69451012_69451039	5.34226	GCUGGUG	ENSMUST00000004036.6|Efnb3|ENSMUSG00000003934.6|ephrin B3
mm39_v1_chr7_+_126549692_126549756	5.33956	GCUGGUG	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr15_-_79389442_79389442	5.04958	GCUGGUG	ENSMUST00000057801.8|Kcnj4|ENSMUSG00000044216.8|potassium inwardly-rectifying channel, subfamily J, member 4
mm39_v1_chr19_-_46315543_46315595	5.02855	GCUGGUG	ENSMUST00000223917.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000224447.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000041391.5|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000096029.12|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing
mm39_v1_chr2_-_30014466_30014482	4.87041	GCUGGUG	ENSMUST00000044751.14|Zer1|ENSMUSG00000039686.15|zyg-11 related, cell cycle regulator
mm39_v1_chr2_-_130480014_130480033	4.59591	GCUGGUG	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr2_+_125514997_125515053	4.56277	GCUGGUG	ENSMUST00000164756.4|Eid1|ENSMUSG00000091337.4|EP300 interacting inhibitor of differentiation 1
mm39_v1_chr2_-_17735847_17735898	4.41786	GCUGGUG	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr9_+_32027335_32027432	4.30123	GCUGGUG	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr8_+_83589979_83590055	4.22359	GCUGGUG	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr12_-_14202041_14202070	4.19094	GCUGGUG	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr2_+_32477069_32477145	4.06026	GCUGGUG	ENSMUST00000102818.11|St6galnac4|ENSMUSG00000079442.13|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm39_v1_chr9_+_40180726_40180737	3.97129	GCUGGUG	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr1_+_105591595_105591648	3.96254	GCUGGUG	ENSMUST00000039173.13|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000086721.10|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000190501.7|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
mm39_v1_chr10_-_43050516_43050565	3.90987	GCUGGUG	ENSMUST00000040275.9|Sobp|ENSMUSG00000038248.9|sine oculis binding protein
mm39_v1_chr12_-_109566764_109566781	3.90793	GCUGGUG	ENSMUST00000149046.4|Rtl1|ENSMUSG00000085925.4|retrotransposon Gaglike 1
mm39_v1_chr8_-_29709652_29709669	3.86908	GCUGGUG	ENSMUST00000168630.4|Unc5d|ENSMUSG00000063626.7|unc-5 netrin receptor D
mm39_v1_chr10_-_81066607_81066667	3.82639	GCUGGUG	ENSMUST00000047408.6|Atcay|ENSMUSG00000034958.12|ataxia, cerebellar, Cayman type
mm39_v1_chr5_-_134717443_134717491	3.7376	GCUGGUG	ENSMUST00000015137.10|Limk1|ENSMUSG00000029674.14|LIM-domain containing, protein kinase
mm39_v1_chr15_-_96540760_96540865	3.68773	GCUGGUG	ENSMUST00000088452.11|Slc38a1|ENSMUSG00000023169.16|solute carrier family 38, member 1
mm39_v1_chr8_+_4543021_4543199	3.61519	GCUGGUG	ENSMUST00000176042.2|Cers4|ENSMUSG00000008206.17|ceramide synthase 4	ENSMUST00000008350.16|Cers4|ENSMUSG00000008206.17|ceramide synthase 4
mm39_v1_chr5_+_14564932_14565007	3.58831	GCUGGUG	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr6_-_53045546_53045640	3.53083	GCUGGUG	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr15_+_100659622_100659679	3.51829	GCUGGUG	ENSMUST00000023776.13|Slc4a8|ENSMUSG00000023032.13|solute carrier family 4 (anion exchanger), member 8
mm39_v1_chr17_-_49871291_49871371	3.42901	GCUGGUG	ENSMUST00000224595.2|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2	ENSMUST00000057610.8|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2
mm39_v1_chr14_+_10123804_10123919	3.40908	GCUGGUG	ENSMUST00000022262.6|Fezf2|ENSMUSG00000021743.7|Fez family zinc finger 2	ENSMUST00000224714.2|Fezf2|ENSMUSG00000021743.7|Fez family zinc finger 2
mm39_v1_chr1_-_88629843_88629943	3.34523	GCUGGUG	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr10_-_86334700_86334730	3.32332	GCUGGUG	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr10_-_20600797_20600824	3.30689	GCUGGUG	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr7_-_43139390_43139499	3.21031	GCUGGUG	ENSMUST00000107974.3|Iglon5|ENSMUSG00000013367.6|IgLON family member 5
mm39_v1_chr11_-_83959175_83959199	3.19334	GCUGGUG	ENSMUST00000100705.11|Dusp14|ENSMUSG00000018648.16|dual specificity phosphatase 14
mm39_v1_chr14_-_70043079_70043117	3.19032	GCUGGUG	ENSMUST00000022665.4|Rhobtb2|ENSMUSG00000022075.8|Rho-related BTB domain containing 2
mm39_v1_chr6_-_113172340_113172349	3.08306	GCUGGUG	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr12_-_85017586_85017674	3.02191	GCUGGUG	ENSMUST00000165886.2|Arel1|ENSMUSG00000042350.14|apoptosis resistant E3 ubiquitin protein ligase 1	ENSMUST00000167448.8|Arel1|ENSMUSG00000042350.14|apoptosis resistant E3 ubiquitin protein ligase 1	ENSMUST00000043169.14|Arel1|ENSMUSG00000042350.14|apoptosis resistant E3 ubiquitin protein ligase 1
mm39_v1_chr1_-_86598286_86598302	2.9978	GCUGGUG	ENSMUST00000027449.6|Nppc|ENSMUSG00000026241.6|natriuretic peptide type C
mm39_v1_chr12_+_84498196_84498292	2.9935	GCUGGUG	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr15_-_103248512_103248527	2.97217	GCUGGUG	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr3_-_50398027_50398063	2.95857	GCUGGUG	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr11_+_115272732_115272759	2.796	GCUGGUG	ENSMUST00000053288.6|Cdr2l|ENSMUSG00000050910.6|cerebellar degeneration-related protein 2-like
mm39_v1_chr5_+_16139760_16139827	2.7913	GCUGGUG	ENSMUST00000101581.10|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000039370.14|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000199704.5|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000180204.8|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000078272.13|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000115281.7|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm39_v1_chr13_+_55097200_55097293	2.72273	GCUGGUG	ENSMUST00000026994.14|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A	ENSMUST00000109994.9|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A
mm39_v1_chr5_+_129578285_129578317	2.68828	GCUGGUG	ENSMUST00000053737.9|Sfswap|ENSMUSG00000029439.15|splicing factor SWAP
mm39_v1_chr15_+_59246080_59246128	2.65613	GCUGGUG	ENSMUST00000168722.3|Nsmce2|ENSMUSG00000059586.11|NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
mm39_v1_chr11_-_72026547_72026604	2.64259	GCUGGUG	ENSMUST00000108508.3|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3	ENSMUST00000075258.13|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3
mm39_v1_chr4_-_59783780_59783875	2.59059	GCUGGUG	ENSMUST00000107526.8|Inip|ENSMUSG00000038544.15|INTS3 and NABP interacting protein	ENSMUST00000095063.11|Inip|ENSMUSG00000038544.15|INTS3 and NABP interacting protein
mm39_v1_chr13_+_117356808_117356848	2.55412	GCUGGUG	ENSMUST00000022242.9|Emb|ENSMUSG00000021728.9|embigin
mm39_v1_chr3_-_56091096_56091122	2.52153	GCUGGUG	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr9_+_95836797_95836836	2.43699	GCUGGUG	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr14_+_119375753_119375753	2.40577	GCUGGUG	ENSMUST00000065904.5|Hs6st3|ENSMUSG00000053465.7|heparan sulfate 6-O-sulfotransferase 3
mm39_v1_chrX_-_142716200_142716307	2.38337	GCUGGUG	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr2_-_79287095_79287102	2.37628	GCUGGUG	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr5_-_116729870_116729889	2.36956	GCUGGUG	ENSMUST00000076124.7|Srrm4|ENSMUSG00000063919.12|serine/arginine repetitive matrix 4
mm39_v1_chrX_+_100892981_100892998	2.35023	GCUGGUG	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr15_+_81629258_81629333	2.34506	GCUGGUG	ENSMUST00000109554.3|Zc3h7b|ENSMUSG00000022390.12|zinc finger CCCH type containing 7B	ENSMUST00000230946.2|Zc3h7b|ENSMUSG00000022390.12|zinc finger CCCH type containing 7B
mm39_v1_chr3_+_88523440_88523458	2.34502	GCUGGUG	ENSMUST00000177498.8|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2	ENSMUST00000176500.8|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr5_+_13449276_13449350	2.29109	GCUGGUG	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr12_-_46865709_46865720	2.2816	GCUGGUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr11_-_85125889_85125963	2.23851	GCUGGUG	ENSMUST00000018625.10|Appbp2|ENSMUSG00000018481.10|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm39_v1_chr4_-_45084564_45084610	2.19767	GCUGGUG	ENSMUST00000052236.13|Fbxo10|ENSMUSG00000048232.13|F-box protein 10
mm39_v1_chr8_+_45960931_45960955	2.19489	GCUGGUG	ENSMUST00000171337.10|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000067107.15|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr11_+_52655461_52655520	2.19315	GCUGGUG	ENSMUST00000036796.8|Fstl4|ENSMUSG00000036264.10|follistatin-like 4
mm39_v1_chr15_-_84872158_84872219	2.18004	GCUGGUG	ENSMUST00000165743.2|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene	ENSMUST00000047144.13|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene
mm39_v1_chr4_+_85123654_85123772	2.17501	GCUGGUG	ENSMUST00000030212.15|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107189.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107184.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2
mm39_v1_chr7_+_97345841_97345932	2.15762	GCUGGUG	ENSMUST00000026506.5|Clns1a|ENSMUSG00000025439.6|chloride channel, nucleotide-sensitive, 1A
mm39_v1_chr4_+_138181616_138181643	2.10212	GCUGGUG	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr2_-_84717036_84717054	2.10032	GCUGGUG	ENSMUST00000054514.6|Rtn4rl2|ENSMUSG00000050896.13|reticulon 4 receptor-like 2	ENSMUST00000151799.8|Rtn4rl2|ENSMUSG00000050896.13|reticulon 4 receptor-like 2
mm39_v1_chr19_-_4993060_4993155	2.08236	GCUGGUG	ENSMUST00000133504.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000133254.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000120475.8|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000025834.15|Peli3|ENSMUSG00000024901.16|pellino 3
mm39_v1_chr1_+_136059101_136059142	2.01876	GCUGGUG	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr2_-_33261411_33261496	1.98799	GCUGGUG	ENSMUST00000131298.7|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000091039.5|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000042615.13|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1
mm39_v1_chr10_+_40225272_40225385	1.93915	GCUGGUG	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr8_-_121316043_121316043	1.91865	GCUGGUG	ENSMUST00000034278.6|Gins2|ENSMUSG00000031821.12|GINS complex subunit 2 (Psf2 homolog)
mm39_v1_chr4_+_59805829_59805914	1.89422	GCUGGUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr11_+_102175757_102175857	1.89092	GCUGGUG	ENSMUST00000036376.13|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2	ENSMUST00000100387.11|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr17_-_52139693_52139706	1.83251	GCUGGUG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr4_+_49059255_49059331	1.83052	GCUGGUG	ENSMUST00000076670.3|Plppr1|ENSMUSG00000063446.5|phospholipid phosphatase related 1
mm39_v1_chr9_+_40597297_40597349	1.81729	GCUGGUG	ENSMUST00000034522.8|Clmp|ENSMUSG00000032024.11|CXADR-like membrane protein
mm39_v1_chr1_+_70764874_70765082	1.79706	GCUGGUG	ENSMUST00000053922.12|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like	ENSMUST00000161937.2|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like	ENSMUST00000162182.2|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like
mm39_v1_chr18_+_69478790_69478882	1.74231	GCUGGUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr7_+_18659787_18659826	1.72855	GCUGGUG	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr14_+_34542053_34542108	1.72251	GCUGGUG	ENSMUST00000043349.7|Grid1|ENSMUSG00000041078.8|glutamate receptor, ionotropic, delta 1
mm39_v1_chr2_-_39080701_39080762	1.70346	GCUGGUG	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr6_-_112466780_112466904	1.69466	GCUGGUG	ENSMUST00000053306.8|Oxtr|ENSMUSG00000049112.10|oxytocin receptor
mm39_v1_chr2_+_129040677_129040689	1.69374	GCUGGUG	ENSMUST00000028880.10|Slc20a1|ENSMUSG00000027397.15|solute carrier family 20, member 1
mm39_v1_chr1_+_166081664_166081722	1.62683	GCUGGUG	ENSMUST00000111416.7|Ildr2|ENSMUSG00000040612.14|immunoglobulin-like domain containing receptor 2
mm39_v1_chr3_+_141170941_141170983	1.58262	GCUGGUG	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr9_-_44231526_44231587	1.57379	GCUGGUG	ENSMUST00000214602.2|C2cd2l|ENSMUSG00000032120.12|C2 calcium-dependent domain containing 2-like	ENSMUST00000065080.10|C2cd2l|ENSMUSG00000032120.12|C2 calcium-dependent domain containing 2-like
mm39_v1_chr4_+_132738787_132738817	1.561	GCUGGUG	ENSMUST00000105915.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1	ENSMUST00000105916.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1
mm39_v1_chr5_+_148202075_148202115	1.56037	GCUGGUG	ENSMUST00000071878.12|Mtus2|ENSMUSG00000029651.17|microtubule associated tumor suppressor candidate 2
mm39_v1_chr5_-_121329385_121329501	1.55417	GCUGGUG	ENSMUST00000054547.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11	ENSMUST00000100770.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11
mm39_v1_chr6_+_97187650_97187690	1.49924	GCUGGUG	ENSMUST00000044681.7|Arl6ip5|ENSMUSG00000035199.7|ADP-ribosylation factor-like 6 interacting protein 5
mm39_v1_chr14_+_26959975_26960003	1.48409	GCUGGUG	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr2_-_30364219_30364239	1.45925	GCUGGUG	ENSMUST00000065134.4|Ier5l|ENSMUSG00000089762.4|immediate early response 5-like
mm39_v1_chr7_+_99184645_99184709	1.44421	GCUGGUG	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr6_+_140568366_140568389	1.36345	GCUGGUG	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr10_-_75396164_75396164	1.35289	GCUGGUG	ENSMUST00000051129.10|Lrrc75b|ENSMUSG00000046807.11|leucine rich repeat containing 75B
mm39_v1_chrX_+_72386220_72386237	1.33712	GCUGGUG	ENSMUST00000114499.8|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275	ENSMUST00000033731.4|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275
mm39_v1_chr3_+_108191398_108191458	1.29846	GCUGGUG	ENSMUST00000135636.6|Sort1|ENSMUSG00000068747.15|sortilin 1	ENSMUST00000102632.7|Sort1|ENSMUSG00000068747.15|sortilin 1
mm39_v1_chr3_+_28317354_28317364	1.27297	GCUGGUG	ENSMUST00000159236.9|Tnik|ENSMUSG00000027692.17|TRAF2 and NCK interacting kinase
mm39_v1_chr5_+_67125759_67125790	1.26697	GCUGGUG	ENSMUST00000238993.2|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1	ENSMUST00000038188.14|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr6_-_48063464_48063591	1.22909	GCUGGUG	ENSMUST00000073124.9|Zfp746|ENSMUSG00000057691.9|zinc finger protein 746	ENSMUST00000203609.3|Zfp746|ENSMUSG00000057691.9|zinc finger protein 746
mm39_v1_chr17_-_47922374_47922471	1.22574	GCUGGUG	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chr3_-_104725535_104725558	1.21003	GCUGGUG	ENSMUST00000002297.12|Mov10|ENSMUSG00000002227.16|Mov10 RISC complex RNA helicase
mm39_v1_chr10_-_26249952_26250084	1.20705	GCUGGUG	ENSMUST00000105519.10|L3mbtl3|ENSMUSG00000039089.16|L3MBTL3 histone methyl-lysine binding protein	ENSMUST00000040219.13|L3mbtl3|ENSMUSG00000039089.16|L3MBTL3 histone methyl-lysine binding protein
mm39_v1_chr2_+_163916042_163916140	1.17316	GCUGGUG	ENSMUST00000018353.14|Stk4|ENSMUSG00000018209.16|serine/threonine kinase 4
mm39_v1_chr12_-_107969853_107969872	1.12766	GCUGGUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr8_-_95422851_95422929	1.11122	GCUGGUG	ENSMUST00000034227.6|Pllp|ENSMUSG00000031775.6|plasma membrane proteolipid
mm39_v1_chr9_+_47441471_47441671	1.10895	GCUGGUG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr5_+_93241287_93241310	1.09966	GCUGGUG	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr4_-_20778530_20778569	1.08999	GCUGGUG	ENSMUST00000119374.8|Nkain3|ENSMUSG00000055761.15|Na+/K+ transporting ATPase interacting 3
mm39_v1_chr6_-_90787100_90787142	1.05701	GCUGGUG	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr6_-_32565127_32565148	1.04545	GCUGGUG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr16_-_96971905_96971952	1.02209	GCUGGUG	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr14_+_62793175_62793260	0.991581	GCUGGUG	ENSMUST00000039064.8|Fam124a|ENSMUSG00000035184.16|family with sequence similarity 124, member A
mm39_v1_chr11_-_115918784_115918826	0.987775	GCUGGUG	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr12_+_73948143_73948166	0.982646	GCUGGUG	ENSMUST00000110461.8|Hif1a|ENSMUSG00000021109.14|hypoxia inducible factor 1, alpha subunit
mm39_v1_chr6_-_112673565_112673647	0.980083	GCUGGUG	ENSMUST00000113182.8|Rad18|ENSMUSG00000030254.17|RAD18 E3 ubiquitin protein ligase	ENSMUST00000113180.8|Rad18|ENSMUSG00000030254.17|RAD18 E3 ubiquitin protein ligase	ENSMUST00000068487.12|Rad18|ENSMUSG00000030254.17|RAD18 E3 ubiquitin protein ligase	ENSMUST00000077088.11|Rad18|ENSMUSG00000030254.17|RAD18 E3 ubiquitin protein ligase
mm39_v1_chr3_+_69224189_69224202	0.976114	GCUGGUG	ENSMUST00000029355.9|Ppm1l|ENSMUSG00000027784.11|protein phosphatase 1 (formerly 2C)-like
mm39_v1_chr2_-_124965537_124965581	0.957147	GCUGGUG	ENSMUST00000142718.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000152367.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000067780.10|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000147105.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor
mm39_v1_chr4_-_70328659_70328702	0.935139	GCUGGUG	ENSMUST00000144099.8|Cdk5rap2|ENSMUSG00000039298.17|CDK5 regulatory subunit associated protein 2
mm39_v1_chr11_-_70578744_70578774	0.929148	GCUGGUG	ENSMUST00000108545.9|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2	ENSMUST00000120261.8|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2
mm39_v1_chr2_-_167473892_167474015	0.916556	GCUGGUG	ENSMUST00000060645.13|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000140216.2|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000151365.8|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000109207.10|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1
mm39_v1_chr13_+_35059285_35059285	0.897423	GCUGGUG	ENSMUST00000077853.5|Prpf4b|ENSMUSG00000021413.10|pre-mRNA processing factor 4B
mm39_v1_chr1_+_180553569_180553669	0.880758	GCUGGUG	ENSMUST00000027780.6|Acbd3|ENSMUSG00000026499.6|acyl-Coenzyme A binding domain containing 3
mm39_v1_chr1_-_92107971_92108063	0.873172	GCUGGUG	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr13_-_117162041_117162077	0.866778	GCUGGUG	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr11_-_69304501_69304501	0.858795	GCUGGUG	ENSMUST00000094077.5|Kdm6b|ENSMUSG00000018476.8|KDM1 lysine (K)-specific demethylase 6B
mm39_v1_chr5_-_121974913_121974927	0.858369	GCUGGUG	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chrX_-_135072979_135073091	0.796272	GCUGGUG	ENSMUST00000163584.8|Tceal8|ENSMUSG00000051579.11|transcription elongation factor A (SII)-like 8	ENSMUST00000060101.10|Tceal8|ENSMUSG00000051579.11|transcription elongation factor A (SII)-like 8
mm39_v1_chr4_-_120874376_120874456	0.776268	GCUGGUG	ENSMUST00000043200.8|Smap2|ENSMUSG00000032870.9|small ArfGAP 2
mm39_v1_chr17_-_35407403_35407420	0.744085	GCUGGUG	ENSMUST00000097336.5|Lst1|ENSMUSG00000073412.7|leukocyte specific transcript 1
mm39_v1_chr8_-_95328348_95328625	0.739739	GCUGGUG	ENSMUST00000212547.2|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1	ENSMUST00000212507.2|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1	ENSMUST00000034226.8|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1
mm39_v1_chr9_-_96993169_96993214	0.71608	GCUGGUG	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr18_+_22478146_22478146	0.70918	GCUGGUG	ENSMUST00000120223.8|Asxl3|ENSMUSG00000045215.18|ASXL transcriptional regulator 3	ENSMUST00000097655.4|Asxl3|ENSMUSG00000045215.18|ASXL transcriptional regulator 3
mm39_v1_chr2_+_154278357_154278455	0.69606	GCUGGUG	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr2_+_166647426_166647525	0.695011	GCUGGUG	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chrX_-_156381652_156381711	0.671217	GCUGGUG	ENSMUST00000149249.2|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2	ENSMUST00000058098.15|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2
mm39_v1_chr11_+_77985486_77985504	0.651491	GCUGGUG	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr11_+_74721733_74721746	0.643534	GCUGGUG	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr1_-_119765343_119765403	0.640696	GCUGGUG	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr17_-_17845293_17845329	0.635058	GCUGGUG	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr15_+_66449385_66449487	0.62536	GCUGGUG	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr6_+_114620054_114620066	0.623357	GCUGGUG	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr8_+_106581719_106581781	0.622435	GCUGGUG	ENSMUST00000040445.9|Thap11|ENSMUSG00000036442.9|THAP domain containing 11
mm39_v1_chr4_+_128777339_128777403	0.622192	GCUGGUG	ENSMUST00000035667.9|Trim62|ENSMUSG00000041000.9|tripartite motif-containing 62
mm39_v1_chr19_-_12478803_12478818	0.592201	GCUGGUG	ENSMUST00000045521.9|Dtx4|ENSMUSG00000039982.9|deltex 4, E3 ubiquitin ligase
mm39_v1_chr13_+_21663077_21663141	0.581727	GCUGGUG	ENSMUST00000062609.6|Zkscan4|ENSMUSG00000054931.8|zinc finger with KRAB and SCAN domains 4	ENSMUST00000225845.2|Zkscan4|ENSMUSG00000054931.8|zinc finger with KRAB and SCAN domains 4
mm39_v1_chr19_+_3817396_3817523	0.566138	GCUGGUG	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr2_+_121786444_121786498	0.553044	GCUGGUG	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr9_+_44245981_44245998	0.524383	GCUGGUG	ENSMUST00000052686.4|H2ax|ENSMUSG00000049932.4|H2A.X variant histone
mm39_v1_chr18_-_75830595_75830653	0.491124	GCUGGUG	ENSMUST00000165559.3|Ctif|ENSMUSG00000052928.10|CBP80/20-dependent translation initiation factor
mm39_v1_chr5_+_115567644_115567673	0.486271	GCUGGUG	ENSMUST00000150779.8|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr16_+_55895786_55895855	0.442479	GCUGGUG	ENSMUST00000049128.11|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000089362.9|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202799.4|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000201011.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202000.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7
mm39_v1_chr9_-_21003268_21003304	0.435622	GCUGGUG	ENSMUST00000115487.3|Raver1|ENSMUSG00000010205.12|ribonucleoprotein, PTB-binding 1
mm39_v1_chr11_+_93776965_93777045	0.426399	GCUGGUG	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr9_+_121727421_121727490	0.417967	GCUGGUG	ENSMUST00000214340.2|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2	ENSMUST00000050327.5|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2
mm39_v1_chr7_+_135139542_135139560	0.409618	GCUGGUG	ENSMUST00000073961.8|Ptpre|ENSMUSG00000041836.11|protein tyrosine phosphatase, receptor type, E
mm39_v1_chr10_+_115854118_115854328	0.409026	GCUGGUG	ENSMUST00000063470.11|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr1_+_127796508_127796549	0.404973	GCUGGUG	ENSMUST00000037649.6|Rab3gap1|ENSMUSG00000036104.13|RAB3 GTPase activating protein subunit 1	ENSMUST00000212506.2|Rab3gap1|ENSMUSG00000036104.13|RAB3 GTPase activating protein subunit 1
mm39_v1_chr1_+_6284823_6284907	0.390712	GCUGGUG	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr5_+_134128543_134128635	0.382804	GCUGGUG	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr12_+_86288626_86288711	0.3781	GCUGGUG	ENSMUST00000221368.2|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like	ENSMUST00000071106.6|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like
mm39_v1_chr12_+_16944896_16944904	0.313085	GCUGGUG	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr5_+_108609087_108609107	0.305715	GCUGGUG	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chrX_+_35592006_35592071	0.298895	GCUGGUG	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr1_+_64571942_64572013	0.269512	GCUGGUG	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr15_-_79571977_79572120	0.262534	GCUGGUG	ENSMUST00000023061.7|Josd1|ENSMUSG00000022426.7|Josephin domain containing 1
mm39_v1_chr9_+_57444801_57444860	0.253787	GCUGGUG	ENSMUST00000093833.6|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B	ENSMUST00000114200.10|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B
mm39_v1_chr2_-_151583155_151583232	0.253361	GCUGGUG	ENSMUST00000042452.11|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chrX_+_151016224_151016268	0.248602	GCUGGUG	ENSMUST00000112588.9|Kdm5c|ENSMUSG00000025332.15|lysine (K)-specific demethylase 5C	ENSMUST00000082177.13|Kdm5c|ENSMUSG00000025332.15|lysine (K)-specific demethylase 5C
mm39_v1_chr5_+_135216090_135216126	0.229938	GCUGGUG	ENSMUST00000002825.6|Baz1b|ENSMUSG00000002748.8|bromodomain adjacent to zinc finger domain, 1B
mm39_v1_chr2_+_173579285_173579304	0.219521	GCUGGUG	ENSMUST00000067530.6|Vapb|ENSMUSG00000054455.6|vesicle-associated membrane protein, associated protein B and C
mm39_v1_chr11_+_57409484_57409521	0.21947	GCUGGUG	ENSMUST00000108849.8|Mfap3|ENSMUSG00000020522.14|microfibrillar-associated protein 3	ENSMUST00000020830.14|Mfap3|ENSMUSG00000020522.14|microfibrillar-associated protein 3
mm39_v1_chr4_-_6990774_6990823	0.204159	GCUGGUG	ENSMUST00000039987.4|Tox|ENSMUSG00000041272.12|thymocyte selection-associated high mobility group box
mm39_v1_chr1_+_136395673_136395696	0.202393	GCUGGUG	ENSMUST00000189413.7|Kif14|ENSMUSG00000041498.14|kinesin family member 14	ENSMUST00000047817.12|Kif14|ENSMUSG00000041498.14|kinesin family member 14
mm39_v1_chr6_-_72575319_72575409	0.195513	GCUGGUG	ENSMUST00000114069.8|Elmod3|ENSMUSG00000056698.12|ELMO/CED-12 domain containing 3	ENSMUST00000070990.8|Elmod3|ENSMUSG00000056698.12|ELMO/CED-12 domain containing 3	ENSMUST00000148108.8|Elmod3|ENSMUSG00000056698.12|ELMO/CED-12 domain containing 3	ENSMUST00000141833.8|Elmod3|ENSMUSG00000056698.12|ELMO/CED-12 domain containing 3	ENSMUST00000152705.3|Elmod3|ENSMUSG00000056698.12|ELMO/CED-12 domain containing 3
mm39_v1_chr2_+_181138958_181139009	0.179626	GCUGGUG	ENSMUST00000149163.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000000844.15|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000184849.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000108800.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000069712.9|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr6_+_120341055_120341124	0.174267	GCUGGUG	ENSMUST00000005108.10|Kdm5a|ENSMUSG00000030180.16|lysine (K)-specific demethylase 5A
mm39_v1_chr11_+_57995055_57995192	0.160114	GCUGGUG	ENSMUST00000108843.8|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8	ENSMUST00000134896.2|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8
mm39_v1_chr17_+_36172210_36172232	0.143139	GCUGGUG	ENSMUST00000074259.15|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)	ENSMUST00000174873.2|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)
mm39_v1_chr9_+_46194293_46194322	0.141921	GCUGGUG	ENSMUST00000074957.5|Bud13|ENSMUSG00000032077.6|BUD13 homolog
mm39_v1_chr2_+_157870606_157870651	0.119466	GCUGGUG	ENSMUST00000109518.8|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B	ENSMUST00000029180.14|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B
mm39_v1_chr8_+_95584078_95584123	0.10653	GCUGGUG	ENSMUST00000109521.4|Polr2c|ENSMUSG00000031783.11|polymerase (RNA) II (DNA directed) polypeptide C
mm39_v1_chr2_-_160950936_160950950	0.0996311	GCUGGUG	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr15_-_73295029_73295068	0.0823476	GCUGGUG	ENSMUST00000239146.2|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000110036.11|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000228180.3|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2
mm39_v1_chr3_-_133250129_133250174	0.0728639	GCUGGUG	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr4_+_155896946_155896987	0.0620956	GCUGGUG	ENSMUST00000030944.11|Ccnl2|ENSMUSG00000029068.17|cyclin L2
mm39_v1_chr11_-_50101592_50101654	0.0592584	GCUGGUG	ENSMUST00000143379.2|Sqstm1|ENSMUSG00000015837.16|sequestosome 1	ENSMUST00000015981.12|Sqstm1|ENSMUSG00000015837.16|sequestosome 1	ENSMUST00000102774.11|Sqstm1|ENSMUSG00000015837.16|sequestosome 1
mm39_v1_chr8_-_120567236_120567288	0.0543308	GCUGGUG	ENSMUST00000211873.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000168698.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000034285.14|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)
mm39_v1_chr7_+_66489500_66489561	0.053631	GCUGGUG	ENSMUST00000107478.9|Adamts17|ENSMUSG00000058145.17|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm39_v1_chr7_-_117842787_117842874	0.0483039	GCUGGUG	ENSMUST00000032891.15|Smg1|ENSMUSG00000030655.16|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm39_v1_chr11_-_76289888_76290010	0.04656	GCUGGUG	ENSMUST00000021204.4|Nxn|ENSMUSG00000020844.7|nucleoredoxin
mm39_v1_chr2_-_152239966_152239997	0.0302785	GCUGGUG	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr6_+_108637577_108637643	0.0249957	GCUGGUG	ENSMUST00000032194.11|Bhlhe40|ENSMUSG00000030103.12|basic helix-loop-helix family, member e40
mm39_v1_chr9_+_56982622_56982727	0.00497807	GCUGGUG	ENSMUST00000167715.8|Sin3a|ENSMUSG00000042557.15|transcriptional regulator, SIN3A (yeast)
