mm39_v1_chr8_+_96429665_96429698	23.1005	GGCAGUG	ENSMUST00000073139.14|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4	ENSMUST00000080666.8|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4	ENSMUST00000212160.2|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4
mm39_v1_chr10_-_108846816_108846844	22.9018	GGCAGUG	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr13_+_54519161_54519173	19.1992	GGCAGUG	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr1_-_132470672_132470692	17.7969	GGCAGUG	ENSMUST00000086521.11|Cntn2|ENSMUSG00000053024.15|contactin 2
mm39_v1_chr9_+_111140741_111140826	17.7785	GGCAGUG	ENSMUST00000078626.8|Trank1|ENSMUSG00000062296.9|tetratricopeptide repeat and ankyrin repeat containing 1
mm39_v1_chr9_-_53882530_53882632	17.5004	GGCAGUG	ENSMUST00000048409.14|Elmod1|ENSMUSG00000041986.17|ELMO/CED-12 domain containing 1
mm39_v1_chr7_+_138665900_138665964	17.31	GGCAGUG	ENSMUST00000026551.15|Dpysl4|ENSMUSG00000025478.16|dihydropyrimidinase-like 4
mm39_v1_chr2_+_136555364_136555412	16.8823	GGCAGUG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr19_+_4761181_4761286	16.2089	GGCAGUG	ENSMUST00000008991.8|Sptbn2|ENSMUSG00000067889.8|spectrin beta, non-erythrocytic 2
mm39_v1_chr4_-_68872585_68872639	15.9421	GGCAGUG	ENSMUST00000030036.6|Brinp1|ENSMUSG00000028351.6|bone morphogenic protein/retinoic acid inducible neural specific 1
mm39_v1_chr2_+_21372338_21372353	15.855	GGCAGUG	ENSMUST00000055946.8|Gpr158|ENSMUSG00000045967.12|G protein-coupled receptor 158
mm39_v1_chr14_+_14159978_14160002	15.4701	GGCAGUG	ENSMUST00000137133.2|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000036070.15|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000121887.8|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A
mm39_v1_chr6_+_86055048_86055071	15.399	GGCAGUG	ENSMUST00000032069.8|Add2|ENSMUSG00000030000.11|adducin 2 (beta)
mm39_v1_chr15_-_91457383_91457464	15.2989	GGCAGUG	ENSMUST00000109283.2|Slc2a13|ENSMUSG00000036298.11|solute carrier family 2 (facilitated glucose transporter), member 13
mm39_v1_chr4_+_42916666_42916713	14.5863	GGCAGUG	ENSMUST00000132173.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24	ENSMUST00000107975.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24
mm39_v1_chr3_+_7431717_7431730	13.9838	GGCAGUG	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr2_+_121120070_121120087	13.7723	GGCAGUG	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
mm39_v1_chr18_+_86413077_86413094	13.7661	GGCAGUG	ENSMUST00000058829.4|Neto1|ENSMUSG00000050321.4|neuropilin (NRP) and tolloid (TLL)-like 1
mm39_v1_chr11_-_97944239_97944293	13.5603	GGCAGUG	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr6_-_136150076_136150146	13.4043	GGCAGUG	ENSMUST00000053880.13|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr12_-_31763859_31763946	13.2788	GGCAGUG	ENSMUST00000057783.6|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000236002.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000174480.3|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000176710.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22
mm39_v1_chr3_-_107425316_107425339	13.1628	GGCAGUG	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr1_-_154602102_154602132	12.8972	GGCAGUG	ENSMUST00000187541.7|Cacna1e|ENSMUSG00000004110.18|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm39_v1_chr15_-_78004211_78004232	12.8827	GGCAGUG	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr12_+_52746158_52746186	12.6953	GGCAGUG	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr1_-_172034354_172034371	12.3486	GGCAGUG	ENSMUST00000013842.12|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A	ENSMUST00000111247.8|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A
mm39_v1_chr9_+_45029080_45029179	12.1375	GGCAGUG	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chrX_-_71699740_71699795	12.0219	GGCAGUG	ENSMUST00000055966.13|Gabra3|ENSMUSG00000031343.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm39_v1_chr15_+_30172716_30172748	12.0173	GGCAGUG	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr11_-_101979297_101979359	11.5563	GGCAGUG	ENSMUST00000017458.11|Mpp2|ENSMUSG00000017314.13|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
mm39_v1_chr17_-_43978056_43978105	11.5307	GGCAGUG	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr15_+_82159398_82159482	11.2973	GGCAGUG	ENSMUST00000023095.14|Septin3|ENSMUSG00000022456.19|septin 3	ENSMUST00000230365.2|Septin3|ENSMUSG00000022456.19|septin 3
mm39_v1_chr6_+_114259596_114259777	11.2608	GGCAGUG	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr12_+_49429574_49429666	11.2313	GGCAGUG	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr2_+_162785394_162785437	10.9122	GGCAGUG	ENSMUST00000035751.12|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein	ENSMUST00000156954.8|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein
mm39_v1_chr2_-_32243246_32243294	10.623	GGCAGUG	ENSMUST00000201433.4|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000113352.9|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000201494.4|Dnm1|ENSMUSG00000026825.18|dynamin 1
mm39_v1_chr5_+_113638313_113638417	10.4713	GGCAGUG	ENSMUST00000094452.4|Wscd2|ENSMUSG00000063430.10|WSC domain containing 2
mm39_v1_chr10_+_40759815_40759859	10.3966	GGCAGUG	ENSMUST00000105509.2|Wasf1|ENSMUSG00000019831.15|WASP family, member 1
mm39_v1_chr7_-_139734637_139734790	10.2095	GGCAGUG	ENSMUST00000059241.8|Sprn|ENSMUSG00000045733.8|shadow of prion protein
mm39_v1_chr4_-_25800083_25800146	10.1717	GGCAGUG	ENSMUST00000084770.5|Fut9|ENSMUSG00000055373.9|fucosyltransferase 9
mm39_v1_chr5_+_71857261_71857292	10.1559	GGCAGUG	ENSMUST00000031122.9|Gabrb1|ENSMUSG00000029212.12|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm39_v1_chr10_+_126914755_126914787	10.0039	GGCAGUG	ENSMUST00000039259.7|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	ENSMUST00000217941.2|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm39_v1_chrX_-_142716200_142716307	9.90269	GGCAGUG	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr2_-_66240408_66240478	9.90074	GGCAGUG	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr2_+_65451100_65451170	9.77054	GGCAGUG	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr15_-_98705791_98705813	9.69539	GGCAGUG	ENSMUST00000075444.8|Ddn|ENSMUSG00000059213.8|dendrin
mm39_v1_chr7_+_26958150_26958240	9.61329	GGCAGUG	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr2_-_13016570_13016617	9.44484	GGCAGUG	ENSMUST00000061545.7|C1ql3|ENSMUSG00000049630.7|C1q-like 3
mm39_v1_chr2_-_130480014_130480033	9.29966	GGCAGUG	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr5_-_31250817_31250959	9.23086	GGCAGUG	ENSMUST00000031037.14|Slc30a3|ENSMUSG00000029151.15|solute carrier family 30 (zinc transporter), member 3
mm39_v1_chr6_+_103487973_103488039	8.98648	GGCAGUG	ENSMUST00000066905.9|Chl1|ENSMUSG00000030077.12|cell adhesion molecule L1-like
mm39_v1_chr15_+_98530236_98530292	8.88072	GGCAGUG	ENSMUST00000109150.9|Cacnb3|ENSMUSG00000003352.15|calcium channel, voltage-dependent, beta 3 subunit
mm39_v1_chr4_-_49597837_49597876	8.78208	GGCAGUG	ENSMUST00000042750.3|Pgap4|ENSMUSG00000039611.3|post-GPI attachment to proteins GalNAc transferase 4
mm39_v1_chr5_+_14564932_14565007	8.76961	GGCAGUG	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr11_+_79482005_79482047	8.68787	GGCAGUG	ENSMUST00000017783.13|Rab11fip4|ENSMUSG00000017639.14|RAB11 family interacting protein 4 (class II)
mm39_v1_chr14_-_65662902_65662921	8.16816	GGCAGUG	ENSMUST00000059339.6|Pnoc|ENSMUSG00000045731.7|prepronociceptin
mm39_v1_chr8_-_70892204_70892261	8.13899	GGCAGUG	ENSMUST00000076615.6|Crtc1|ENSMUSG00000003575.14|CREB regulated transcription coactivator 1
mm39_v1_chr19_+_6468761_6468840	8.08616	GGCAGUG	ENSMUST00000113462.8|Nrxn2|ENSMUSG00000033768.18|neurexin II	ENSMUST00000077182.13|Nrxn2|ENSMUSG00000033768.18|neurexin II	ENSMUST00000236635.2|Nrxn2|ENSMUSG00000033768.18|neurexin II	ENSMUST00000113461.8|Nrxn2|ENSMUSG00000033768.18|neurexin II
mm39_v1_chr4_+_120711974_120712041	8.07158	GGCAGUG	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr11_+_104122216_104122279	8.02871	GGCAGUG	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr10_-_5872386_5872405	7.92368	GGCAGUG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr5_+_37208198_37208209	7.86299	GGCAGUG	ENSMUST00000043794.11|Jakmip1|ENSMUSG00000063646.19|janus kinase and microtubule interacting protein 1
mm39_v1_chr11_+_116809669_116809717	7.83135	GGCAGUG	ENSMUST00000103027.10|Mgat5b|ENSMUSG00000043857.17|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm39_v1_chr6_-_13839914_13839941	7.61705	GGCAGUG	ENSMUST00000060442.14|Gpr85|ENSMUSG00000048216.14|G protein-coupled receptor 85
mm39_v1_chr9_-_100453102_100453178	7.51526	GGCAGUG	ENSMUST00000093792.4|Slc35g2|ENSMUSG00000070287.4|solute carrier family 35, member G2
mm39_v1_chr11_-_97913420_97913496	7.50754	GGCAGUG	ENSMUST00000103144.10|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000017552.13|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000092736.11|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000107562.2|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit
mm39_v1_chr9_-_73876182_73876281	7.42519	GGCAGUG	ENSMUST00000184666.8|Unc13c|ENSMUSG00000062151.14|unc-13 homolog C
mm39_v1_chr8_+_94537460_94537471	7.4066	GGCAGUG	ENSMUST00000034198.15|Gnao1|ENSMUSG00000031748.17|guanine nucleotide binding protein, alpha O	ENSMUST00000125716.8|Gnao1|ENSMUSG00000031748.17|guanine nucleotide binding protein, alpha O
mm39_v1_chr11_+_104023657_104023681	7.37864	GGCAGUG	ENSMUST00000093925.5|Crhr1|ENSMUSG00000018634.11|corticotropin releasing hormone receptor 1
mm39_v1_chr11_+_101066867_101066867	7.35278	GGCAGUG	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr4_-_126647156_126647239	7.28814	GGCAGUG	ENSMUST00000030637.14|Ncdn|ENSMUSG00000028833.14|neurochondrin	ENSMUST00000106116.2|Ncdn|ENSMUSG00000028833.14|neurochondrin
mm39_v1_chr10_+_69369590_69369603	7.25524	GGCAGUG	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr3_+_123240562_123240562	7.20842	GGCAGUG	ENSMUST00000029603.10|Prss12|ENSMUSG00000027978.10|protease, serine 12 neurotrypsin (motopsin)
mm39_v1_chr6_+_45036970_45037001	7.09429	GGCAGUG	ENSMUST00000114641.8|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr11_-_98220466_98220482	7.08784	GGCAGUG	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr12_-_85197985_85198049	7.05618	GGCAGUG	ENSMUST00000019379.9|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1	ENSMUST00000221972.2|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1
mm39_v1_chr5_-_106844685_106844707	7.0195	GGCAGUG	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr13_-_8921732_8921945	6.99815	GGCAGUG	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr10_-_121146940_121147094	6.99389	GGCAGUG	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr12_-_119202527_119202599	6.91457	GGCAGUG	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr10_+_85222677_85222704	6.88799	GGCAGUG	ENSMUST00000105307.8|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11	ENSMUST00000020231.10|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11
mm39_v1_chr18_+_39126178_39126240	6.815	GGCAGUG	ENSMUST00000097593.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr7_-_126398343_126398426	6.80178	GGCAGUG	ENSMUST00000032934.12|Aldoa|ENSMUSG00000030695.17|aldolase A, fructose-bisphosphate
mm39_v1_chr19_-_7083094_7083094	6.78704	GGCAGUG	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chrX_+_145745496_145745516	6.76242	GGCAGUG	ENSMUST00000036303.9|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C	ENSMUST00000096299.9|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C	ENSMUST00000156697.8|Htr2c|ENSMUSG00000041380.14|5-hydroxytryptamine (serotonin) receptor 2C
mm39_v1_chr9_+_120132962_120133026	6.69492	GGCAGUG	ENSMUST00000048121.13|Myrip|ENSMUSG00000041794.14|myosin VIIA and Rab interacting protein
mm39_v1_chr1_+_42734889_42734937	6.57171	GGCAGUG	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr6_-_82916655_82916750	6.5581	GGCAGUG	ENSMUST00000000641.15|Sema4f|ENSMUSG00000000627.16|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm39_v1_chr2_+_106523532_106523624	6.48716	GGCAGUG	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr2_-_57004933_57005050	6.46443	GGCAGUG	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr3_+_27237114_27237133	6.35252	GGCAGUG	ENSMUST00000046515.15|Nceh1|ENSMUSG00000027698.15|neutral cholesterol ester hydrolase 1
mm39_v1_chr13_-_36918424_36918466	6.32987	GGCAGUG	ENSMUST00000037623.15|Nrn1|ENSMUSG00000039114.17|neuritin 1
mm39_v1_chr6_-_113172340_113172349	6.32106	GGCAGUG	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr4_+_58943574_58943638	6.31545	GGCAGUG	ENSMUST00000107554.2|Zkscan16|ENSMUSG00000038630.9|zinc finger with KRAB and SCAN domains 16
mm39_v1_chr14_-_63781381_63781440	6.31053	GGCAGUG	ENSMUST00000058679.7|Mtmr9|ENSMUSG00000035078.7|myotubularin related protein 9
mm39_v1_chr12_+_37930661_37930726	6.29641	GGCAGUG	ENSMUST00000040500.9|Dgkb|ENSMUSG00000036095.12|diacylglycerol kinase, beta
mm39_v1_chr7_+_63094489_63094510	6.2509	GGCAGUG	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chr4_-_151946219_151946333	6.22477	GGCAGUG	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr11_-_107361525_107361554	6.05587	GGCAGUG	ENSMUST00000103064.10|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr11_-_113956996_113957044	5.99788	GGCAGUG	ENSMUST00000041627.14|Sdk2|ENSMUSG00000041592.17|sidekick cell adhesion molecule 2
mm39_v1_chr12_-_107969853_107969872	5.92789	GGCAGUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chrX_+_162691978_162692013	5.81561	GGCAGUG	ENSMUST00000069041.15|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chrX_-_141089165_141089290	5.7445	GGCAGUG	ENSMUST00000134825.3|Kcne1l|ENSMUSG00000090122.4|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm39_v1_chr3_-_138780937_138781008	5.64769	GGCAGUG	ENSMUST00000098574.9|Rap1gds1|ENSMUSG00000028149.13|RAP1, GTP-GDP dissociation stimulator 1
mm39_v1_chr11_-_76400245_76400261	5.58377	GGCAGUG	ENSMUST00000094012.11|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr4_-_45084564_45084610	5.47097	GGCAGUG	ENSMUST00000052236.13|Fbxo10|ENSMUSG00000048232.13|F-box protein 10
mm39_v1_chr8_+_56393488_56393544	5.43791	GGCAGUG	ENSMUST00000000275.10|Glra3|ENSMUSG00000038257.11|glycine receptor, alpha 3 subunit
mm39_v1_chr4_+_32982981_32983155	5.31089	GGCAGUG	ENSMUST00000098190.10|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D	ENSMUST00000029946.14|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D
mm39_v1_chr1_+_91468409_91468485	5.27866	GGCAGUG	ENSMUST00000027538.9|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1	ENSMUST00000190484.7|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1	ENSMUST00000186068.2|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1
mm39_v1_chr16_-_90807983_90808001	5.24686	GGCAGUG	ENSMUST00000170853.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000130813.3|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000118390.10|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chr8_+_4216556_4216739	5.222	GGCAGUG	ENSMUST00000239400.2|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000177053.8|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176149.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176072.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176825.3|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like
mm39_v1_chr11_-_61470462_61470533	5.20376	GGCAGUG	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr3_+_107008867_107008883	5.13659	GGCAGUG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr5_-_123711098_123711103	5.05564	GGCAGUG	ENSMUST00000031388.13|Vps33a|ENSMUSG00000029434.13|VPS33A CORVET/HOPS core subunit
mm39_v1_chr13_+_74157538_74157572	5.04362	GGCAGUG	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr9_-_16289527_16289527	4.92444	GGCAGUG	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr17_-_57366795_57366863	4.91709	GGCAGUG	ENSMUST00000040280.14|Slc25a23|ENSMUSG00000046329.15|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm39_v1_chr11_+_82782938_82782954	4.89362	GGCAGUG	ENSMUST00000018988.6|Fndc8|ENSMUSG00000018844.7|fibronectin type III domain containing 8
mm39_v1_chr1_+_75358758_75358793	4.80868	GGCAGUG	ENSMUST00000148515.8|Speg|ENSMUSG00000026207.17|SPEG complex locus	ENSMUST00000113590.8|Speg|ENSMUSG00000026207.17|SPEG complex locus
mm39_v1_chrX_-_56549092_56549117	4.7679	GGCAGUG	ENSMUST00000057645.6|Gpr101|ENSMUSG00000036357.6|G protein-coupled receptor 101
mm39_v1_chr11_+_94881861_94881916	4.65035	GGCAGUG	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr17_+_26028059_26028146	4.63376	GGCAGUG	ENSMUST00000045692.9|Fbxl16|ENSMUSG00000025738.9|F-box and leucine-rich repeat protein 16
mm39_v1_chr1_+_132226308_132226370	4.6092	GGCAGUG	ENSMUST00000046071.5|Klhdc8a|ENSMUSG00000042115.5|kelch domain containing 8A
mm39_v1_chr19_+_30007910_30007928	4.56347	GGCAGUG	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr5_-_8417982_8418106	4.55814	GGCAGUG	ENSMUST00000088761.11|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115386.8|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000050166.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000046838.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115388.9|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000088744.12|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115385.2|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22
mm39_v1_chr14_-_47059694_47059743	4.53235	GGCAGUG	ENSMUST00000111817.8|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta	ENSMUST00000079314.12|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta
mm39_v1_chr5_-_135963408_135963467	4.51744	GGCAGUG	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr14_-_122035225_122035272	4.49414	GGCAGUG	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr9_-_64160899_64160918	4.36012	GGCAGUG	ENSMUST00000005066.9|Map2k1|ENSMUSG00000004936.9|mitogen-activated protein kinase kinase 1
mm39_v1_chr13_+_76532470_76532654	4.34806	GGCAGUG	ENSMUST00000125209.8|Mctp1|ENSMUSG00000021596.17|multiple C2 domains, transmembrane 1
mm39_v1_chr2_-_31735937_31736017	4.34096	GGCAGUG	ENSMUST00000028188.8|Fibcd1|ENSMUSG00000026841.8|fibrinogen C domain containing 1
mm39_v1_chr11_-_80268800_80268860	4.32246	GGCAGUG	ENSMUST00000179332.8|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene	ENSMUST00000103225.11|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene	ENSMUST00000134274.2|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene
mm39_v1_chr5_+_122988111_122988228	4.29713	GGCAGUG	ENSMUST00000031434.8|Rnf34|ENSMUSG00000029474.8|ring finger protein 34	ENSMUST00000198602.2|Rnf34|ENSMUSG00000029474.8|ring finger protein 34
mm39_v1_chr8_+_117670126_117670163	4.27632	GGCAGUG	ENSMUST00000109099.4|Atmin|ENSMUSG00000047388.11|ATM interactor
mm39_v1_chr8_-_61436249_61436353	4.14483	GGCAGUG	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr1_-_133728779_133728805	4.09676	GGCAGUG	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr11_+_75084609_75084691	4.0905	GGCAGUG	ENSMUST00000102514.4|Rtn4rl1|ENSMUSG00000045287.7|reticulon 4 receptor-like 1
mm39_v1_chr11_+_4936824_4936894	4.04675	GGCAGUG	ENSMUST00000109897.8|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit	ENSMUST00000009234.16|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit
mm39_v1_chr2_+_134627987_134628090	4.03674	GGCAGUG	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr11_+_62172283_62172324	4.02829	GGCAGUG	ENSMUST00000101075.11|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19	ENSMUST00000050646.13|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19
mm39_v1_chr2_+_65676111_65676142	4.01509	GGCAGUG	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr11_+_105480796_105480857	4.00507	GGCAGUG	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr2_+_179084220_179084235	3.95353	GGCAGUG	ENSMUST00000000314.13|Cdh4|ENSMUSG00000000305.13|cadherin 4
mm39_v1_chr3_+_69224189_69224202	3.90231	GGCAGUG	ENSMUST00000029355.9|Ppm1l|ENSMUSG00000027784.11|protein phosphatase 1 (formerly 2C)-like
mm39_v1_chr5_+_91665474_91665553	3.84793	GGCAGUG	ENSMUST00000040576.10|Parm1|ENSMUSG00000034981.10|prostate androgen-regulated mucin-like protein 1
mm39_v1_chr1_+_11063678_11063702	3.74368	GGCAGUG	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr1_-_54233207_54233207	3.66726	GGCAGUG	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr7_+_18810097_18810163	3.53953	GGCAGUG	ENSMUST00000032570.14|Dmwd|ENSMUSG00000030410.17|dystrophia myotonica-containing WD repeat motif
mm39_v1_chr3_+_129326004_129326089	3.49338	GGCAGUG	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr4_-_130253703_130253759	3.47363	GGCAGUG	ENSMUST00000134159.3|Zcchc17|ENSMUSG00000028772.20|zinc finger, CCHC domain containing 17
mm39_v1_chr19_-_6178237_6178334	3.45676	GGCAGUG	ENSMUST00000025702.14|Snx15|ENSMUSG00000024787.15|sorting nexin 15
mm39_v1_chr2_-_163760603_163760603	3.44939	GGCAGUG	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr7_-_121306476_121306685	3.44284	GGCAGUG	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr5_+_134128543_134128635	3.43916	GGCAGUG	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr14_+_34542053_34542108	3.38407	GGCAGUG	ENSMUST00000043349.7|Grid1|ENSMUSG00000041078.8|glutamate receptor, ionotropic, delta 1
mm39_v1_chr12_-_98867431_98867534	3.29878	GGCAGUG	ENSMUST00000065716.8|Eml5|ENSMUSG00000051166.11|echinoderm microtubule associated protein like 5
mm39_v1_chr4_-_16013867_16013890	3.21424	GGCAGUG	ENSMUST00000037198.10|Osgin2|ENSMUSG00000041153.10|oxidative stress induced growth inhibitor family member 2
mm39_v1_chr19_+_41921903_41921979	3.13917	GGCAGUG	ENSMUST00000224258.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000026154.9|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000224896.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16
mm39_v1_chr12_-_87247082_87247228	3.06855	GGCAGUG	ENSMUST00000037418.7|Tmed8|ENSMUSG00000034111.7|transmembrane p24 trafficking protein 8
mm39_v1_chr2_-_63014622_63014681	3.01597	GGCAGUG	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr10_+_128247598_128247627	2.98373	GGCAGUG	ENSMUST00000096386.13|Rnf41|ENSMUSG00000025373.15|ring finger protein 41
mm39_v1_chr18_-_77652820_77652858	2.97852	GGCAGUG	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr15_-_79430942_79430986	2.97436	GGCAGUG	ENSMUST00000054014.9|Ddx17|ENSMUSG00000055065.8|DEAD box helicase 17	ENSMUST00000229877.2|Ddx17|ENSMUSG00000055065.8|DEAD box helicase 17
mm39_v1_chr10_+_62816005_62816041	2.92846	GGCAGUG	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr7_-_83735702_83735717	2.9078	GGCAGUG	ENSMUST00000064174.12|Cemip|ENSMUSG00000052353.14|cell migration inducing protein, hyaluronan binding
mm39_v1_chr12_+_112688597_112688673	2.88983	GGCAGUG	ENSMUST00000101018.11|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000092279.7|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000179041.8|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000222711.2|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B
mm39_v1_chrX_+_71006577_71006619	2.87356	GGCAGUG	ENSMUST00000048790.7|Prrg3|ENSMUSG00000033361.14|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm39_v1_chr8_+_4543021_4543199	2.81467	GGCAGUG	ENSMUST00000176042.2|Cers4|ENSMUSG00000008206.17|ceramide synthase 4	ENSMUST00000008350.16|Cers4|ENSMUSG00000008206.17|ceramide synthase 4
mm39_v1_chr8_+_26008773_26008788	2.79002	GGCAGUG	ENSMUST00000084027.13|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000178276.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000179592.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr5_+_20112500_20112549	2.7835	GGCAGUG	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr15_+_100366886_100366954	2.75007	GGCAGUG	ENSMUST00000037001.10|Letmd1|ENSMUSG00000037353.10|LETM1 domain containing 1	ENSMUST00000230294.2|Letmd1|ENSMUSG00000037353.10|LETM1 domain containing 1
mm39_v1_chr18_+_61238908_61238959	2.73504	GGCAGUG	ENSMUST00000115268.4|Csf1r|ENSMUSG00000024621.17|colony stimulating factor 1 receptor
mm39_v1_chr9_-_44710480_44710604	2.71877	GGCAGUG	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr15_-_66841465_66841496	2.6823	GGCAGUG	ENSMUST00000170903.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000166420.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000005256.14|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000164070.2|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1
mm39_v1_chr1_+_75498162_75498247	2.67252	GGCAGUG	ENSMUST00000027414.16|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein	ENSMUST00000113553.2|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein
mm39_v1_chr1_+_134637031_134637056	2.63192	GGCAGUG	ENSMUST00000121990.2|Syt2|ENSMUSG00000026452.16|synaptotagmin II
mm39_v1_chr4_+_59805829_59805914	2.54996	GGCAGUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr17_-_52139693_52139706	2.52365	GGCAGUG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr5_-_114582097_114582121	2.50689	GGCAGUG	ENSMUST00000031560.14|Mmab|ENSMUSG00000029575.18|methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
mm39_v1_chr6_-_85479962_85480016	2.49222	GGCAGUG	ENSMUST00000159062.8|Fbxo41|ENSMUSG00000047013.16|F-box protein 41
mm39_v1_chr4_+_21931290_21931367	2.44874	GGCAGUG	ENSMUST00000029908.8|Faxc|ENSMUSG00000028246.14|failed axon connections homolog
mm39_v1_chr17_+_26780453_26780479	2.41603	GGCAGUG	ENSMUST00000167662.8|Ergic1|ENSMUSG00000001576.16|endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
mm39_v1_chr4_-_35845204_35845204	2.40481	GGCAGUG	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr6_+_108760025_108760096	2.39569	GGCAGUG	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr12_-_12991828_12991915	2.39291	GGCAGUG	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr9_-_70564403_70564470	2.39228	GGCAGUG	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr7_-_97827461_97827481	2.38796	GGCAGUG	ENSMUST00000040971.14|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chr5_+_117979899_117979922	2.37132	GGCAGUG	ENSMUST00000142742.9|Nos1|ENSMUSG00000029361.19|nitric oxide synthase 1, neuronal
mm39_v1_chr11_-_28534260_28534325	2.3646	GGCAGUG	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr1_+_180553569_180553669	2.35379	GGCAGUG	ENSMUST00000027780.6|Acbd3|ENSMUSG00000026499.6|acyl-Coenzyme A binding domain containing 3
mm39_v1_chr7_+_125871761_125871791	2.34808	GGCAGUG	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr3_-_95014090_95014208	2.34466	GGCAGUG	ENSMUST00000005768.8|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107232.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107236.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm39_v1_chr8_+_14145848_14145931	2.34179	GGCAGUG	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr2_-_30014466_30014482	2.32926	GGCAGUG	ENSMUST00000044751.14|Zer1|ENSMUSG00000039686.15|zyg-11 related, cell cycle regulator
mm39_v1_chr17_+_46513666_46513782	2.30892	GGCAGUG	ENSMUST00000087031.7|Xpo5|ENSMUSG00000067150.7|exportin 5
mm39_v1_chr15_-_98193995_98194042	2.30748	GGCAGUG	ENSMUST00000023722.12|Zfp641|ENSMUSG00000022987.13|zinc finger protein 641	ENSMUST00000169721.3|Zfp641|ENSMUSG00000022987.13|zinc finger protein 641
mm39_v1_chr6_+_4747298_4747354	2.30329	GGCAGUG	ENSMUST00000166678.2|Peg10|ENSMUSG00000092035.9|paternally expressed 10	ENSMUST00000176204.8|Peg10|ENSMUSG00000092035.9|paternally expressed 10
mm39_v1_chrX_+_92330102_92330128	2.27546	GGCAGUG	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chrX_+_48559327_48559425	2.19567	GGCAGUG	ENSMUST00000114904.10|Arhgap36|ENSMUSG00000036198.13|Rho GTPase activating protein 36
mm39_v1_chr4_+_14864076_14864147	2.18032	GGCAGUG	ENSMUST00000029875.4|Pip4p2|ENSMUSG00000028221.4|phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
mm39_v1_chr10_-_112764879_112764919	2.13949	GGCAGUG	ENSMUST00000099276.4|Atxn7l3b|ENSMUSG00000074748.4|ataxin 7-like 3B
mm39_v1_chr1_-_57011595_57011661	2.12926	GGCAGUG	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr9_+_94551929_94551984	2.07321	GGCAGUG	ENSMUST00000033463.10|Slc9a9|ENSMUSG00000031129.10|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm39_v1_chr8_-_112660363_112660513	2.05597	GGCAGUG	ENSMUST00000034429.9|Tmem231|ENSMUSG00000031951.9|transmembrane protein 231
mm39_v1_chr7_-_119319965_119320026	2.01802	GGCAGUG	ENSMUST00000033236.9|Thumpd1|ENSMUSG00000030942.9|THUMP domain containing 1
mm39_v1_chr5_+_30971915_30971985	2.01622	GGCAGUG	ENSMUST00000031058.15|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr13_+_13764982_13765058	2.00926	GGCAGUG	ENSMUST00000110559.3|Lyst|ENSMUSG00000019726.13|lysosomal trafficking regulator
mm39_v1_chr1_-_58625431_58625482	1.99073	GGCAGUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr19_-_5323092_5323158	1.92944	GGCAGUG	ENSMUST00000237463.2|Pacs1|ENSMUSG00000024855.11|phosphofurin acidic cluster sorting protein 1	ENSMUST00000025786.9|Pacs1|ENSMUSG00000024855.11|phosphofurin acidic cluster sorting protein 1
mm39_v1_chr16_-_21513317_21513415	1.91448	GGCAGUG	ENSMUST00000231592.2|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene	ENSMUST00000053336.8|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene
mm39_v1_chr10_-_87329513_87329528	1.88794	GGCAGUG	ENSMUST00000020243.10|Ascl1|ENSMUSG00000020052.10|achaete-scute family bHLH transcription factor 1
mm39_v1_chr12_-_50695881_50696064	1.87892	GGCAGUG	ENSMUST00000002765.9|Prkd1|ENSMUSG00000002688.9|protein kinase D1
mm39_v1_chr3_+_132389867_132389907	1.84372	GGCAGUG	ENSMUST00000169172.5|Tbck|ENSMUSG00000028030.13|TBC1 domain containing kinase
mm39_v1_chr1_-_174749379_174749393	1.8354	GGCAGUG	ENSMUST00000055294.4|Grem2|ENSMUSG00000050069.4|gremlin 2, DAN family BMP antagonist
mm39_v1_chr3_+_105359641_105359688	1.80062	GGCAGUG	ENSMUST00000098761.10|Kcnd3|ENSMUSG00000040896.17|potassium voltage-gated channel, Shal-related family, member 3
mm39_v1_chr1_-_119765343_119765403	1.77788	GGCAGUG	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr1_-_105284383_105284402	1.77359	GGCAGUG	ENSMUST00000058688.7|Rnf152|ENSMUSG00000047496.7|ring finger protein 152
mm39_v1_chr12_+_64964674_64964776	1.76281	GGCAGUG	ENSMUST00000058135.6|Gm527|ENSMUSG00000047227.6|predicted gene 527	ENSMUST00000220993.2|Gm527|ENSMUSG00000047227.6|predicted gene 527
mm39_v1_chr14_+_5894220_5894254	1.73736	GGCAGUG	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr10_-_110845860_110845927	1.7225	GGCAGUG	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr2_-_33261411_33261496	1.59233	GGCAGUG	ENSMUST00000131298.7|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000091039.5|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000042615.13|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1
mm39_v1_chr11_-_51748450_51748511	1.58824	GGCAGUG	ENSMUST00000020655.14|Jade2|ENSMUSG00000020387.16|jade family PHD finger 2	ENSMUST00000109090.8|Jade2|ENSMUSG00000020387.16|jade family PHD finger 2
mm39_v1_chr6_-_39354570_39354612	1.58641	GGCAGUG	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr2_-_84508385_84508462	1.584	GGCAGUG	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr13_+_95833359_95833376	1.54913	GGCAGUG	ENSMUST00000022182.5|F2rl2|ENSMUSG00000021675.5|coagulation factor II (thrombin) receptor-like 2
mm39_v1_chr9_+_70586232_70586292	1.54191	GGCAGUG	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr1_-_37580084_37580128	1.52761	GGCAGUG	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr4_-_24800890_24800890	1.52555	GGCAGUG	ENSMUST00000108214.9|Klhl32|ENSMUSG00000040387.17|kelch-like 32
mm39_v1_chr2_+_29692638_29692660	1.52316	GGCAGUG	ENSMUST00000080065.3|Slc27a4|ENSMUSG00000059316.3|solute carrier family 27 (fatty acid transporter), member 4
mm39_v1_chr16_+_91526169_91526272	1.5139	GGCAGUG	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr6_-_119825081_119825129	1.51082	GGCAGUG	ENSMUST00000183703.8|Erc1|ENSMUSG00000030172.16|ELKS/RAB6-interacting/CAST family member 1	ENSMUST00000183911.8|Erc1|ENSMUSG00000030172.16|ELKS/RAB6-interacting/CAST family member 1
mm39_v1_chr11_-_74787877_74787920	1.49447	GGCAGUG	ENSMUST00000057631.12|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2	ENSMUST00000081799.6|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2
mm39_v1_chr5_-_115236354_115236354	1.4509	GGCAGUG	ENSMUST00000100848.3|Gm10401|ENSMUSG00000072693.3|predicted gene 10401
mm39_v1_chr13_-_30170031_30170048	1.43172	GGCAGUG	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr15_-_79287747_79287778	1.41568	GGCAGUG	ENSMUST00000074991.10|Tmem184b|ENSMUSG00000009035.16|transmembrane protein 184b
mm39_v1_chr2_+_119505543_119505589	1.41275	GGCAGUG	ENSMUST00000028767.9|Rtf1|ENSMUSG00000027304.10|RTF1, Paf1/RNA polymerase II complex component
mm39_v1_chr2_+_180609008_180609099	1.41036	GGCAGUG	ENSMUST00000108862.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000029092.13|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108861.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108860.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108859.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1
mm39_v1_chr15_-_97665679_97665853	1.32626	GGCAGUG	ENSMUST00000129223.9|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3	ENSMUST00000126854.9|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3	ENSMUST00000135080.2|Rapgef3|ENSMUSG00000022469.18|Rap guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr4_+_57434247_57434369	1.30348	GGCAGUG	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr8_+_125519751_125519831	1.29298	GGCAGUG	ENSMUST00000041106.9|Trim67|ENSMUSG00000036913.16|tripartite motif-containing 67	ENSMUST00000167588.9|Trim67|ENSMUSG00000036913.16|tripartite motif-containing 67
mm39_v1_chr5_+_30745447_30745514	1.28172	GGCAGUG	ENSMUST00000066295.5|Kcnk3|ENSMUSG00000049265.9|potassium channel, subfamily K, member 3
mm39_v1_chr11_+_116089678_116089729	1.26154	GGCAGUG	ENSMUST00000021130.7|Ten1|ENSMUSG00000020778.13|TEN1 telomerase capping complex subunit
mm39_v1_chr18_-_38345010_38345106	1.25731	GGCAGUG	ENSMUST00000159405.3|Pcdh1|ENSMUSG00000051375.16|protocadherin 1	ENSMUST00000160721.8|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr11_+_105927698_105927716	1.24975	GGCAGUG	ENSMUST00000058438.9|Dcaf7|ENSMUSG00000049354.9|DDB1 and CUL4 associated factor 7
mm39_v1_chr5_-_143255713_143255777	1.24096	GGCAGUG	ENSMUST00000161448.8|Zfp316|ENSMUSG00000046658.17|zinc finger protein 316
mm39_v1_chr2_+_20742115_20742152	1.22943	GGCAGUG	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr4_+_108576846_108576846	1.21713	GGCAGUG	ENSMUST00000178992.2|3110021N24Rik|ENSMUSG00000094958.2|RIKEN cDNA 3110021N24 gene
mm39_v1_chr6_+_127864543_127864604	1.21293	GGCAGUG	ENSMUST00000032501.6|Tspan11|ENSMUSG00000030351.6|tetraspanin 11
mm39_v1_chr3_-_90416757_90416813	1.19878	GGCAGUG	ENSMUST00000107343.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000001043.14|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107344.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000076639.11|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107346.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000146740.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107342.2|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000049937.13|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1
mm39_v1_chr1_+_176642226_176642226	1.19462	GGCAGUG	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr17_+_36227433_36227458	1.18977	GGCAGUG	ENSMUST00000087211.9|Ppp1r10|ENSMUSG00000039220.17|protein phosphatase 1, regulatory subunit 10
mm39_v1_chr12_-_85143852_85143865	1.17803	GGCAGUG	ENSMUST00000177289.9|Prox2|ENSMUSG00000042320.18|prospero homeobox 2
mm39_v1_chr1_-_84262274_84262366	1.17569	GGCAGUG	ENSMUST00000177458.2|Pid1|ENSMUSG00000045658.17|phosphotyrosine interaction domain containing 1	ENSMUST00000168574.9|Pid1|ENSMUSG00000045658.17|phosphotyrosine interaction domain containing 1
mm39_v1_chr13_+_108180957_108181032	1.163	GGCAGUG	ENSMUST00000095458.6|Smim15|ENSMUSG00000071180.6|small integral membrane protein 15	ENSMUST00000223808.2|Smim15|ENSMUSG00000071180.6|small integral membrane protein 15	ENSMUST00000226042.2|Smim15|ENSMUSG00000071180.6|small integral membrane protein 15	ENSMUST00000225972.2|Smim15|ENSMUSG00000071180.6|small integral membrane protein 15
mm39_v1_chr2_+_32477069_32477145	1.08665	GGCAGUG	ENSMUST00000102818.11|St6galnac4|ENSMUSG00000079442.13|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm39_v1_chrX_-_37341274_37341316	1.0828	GGCAGUG	ENSMUST00000089056.10|Tmem255a|ENSMUSG00000036502.15|transmembrane protein 255A	ENSMUST00000089054.11|Tmem255a|ENSMUSG00000036502.15|transmembrane protein 255A	ENSMUST00000066498.8|Tmem255a|ENSMUSG00000036502.15|transmembrane protein 255A
mm39_v1_chr15_-_76702170_76702375	1.082	GGCAGUG	ENSMUST00000175843.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000177026.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176736.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000036176.16|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176219.9|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239134.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239003.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000077821.10|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39
mm39_v1_chr13_-_117162041_117162077	1.05334	GGCAGUG	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr1_+_86510614_86510660	0.969013	GGCAGUG	ENSMUST00000121534.8|Cops7b|ENSMUSG00000026240.13|COP9 signalosome subunit 7B	ENSMUST00000149542.2|Cops7b|ENSMUSG00000026240.13|COP9 signalosome subunit 7B
mm39_v1_chrX_+_55391749_55391775	0.962447	GGCAGUG	ENSMUST00000101560.4|Zfp449|ENSMUSG00000073176.5|zinc finger protein 449
mm39_v1_chrX_-_94488394_94488478	0.952236	GGCAGUG	ENSMUST00000084535.6|Amer1|ENSMUSG00000050332.8|APC membrane recruitment 1
mm39_v1_chr8_+_75760301_75760381	0.947593	GGCAGUG	ENSMUST00000165630.3|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212651.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212388.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000212299.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000078847.13|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein	ENSMUST00000211869.2|Tom1|ENSMUSG00000042870.16|target of myb1 trafficking protein
mm39_v1_chr4_-_141518202_141518252	0.944824	GGCAGUG	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr3_+_38941089_38941089	0.921532	GGCAGUG	ENSMUST00000061260.8|Fat4|ENSMUSG00000046743.7|FAT atypical cadherin 4
mm39_v1_chr15_-_4025190_4025253	0.855355	GGCAGUG	ENSMUST00000046633.10|AW549877|ENSMUSG00000041935.11|expressed sequence AW549877
mm39_v1_chr5_-_100822097_100822150	0.839442	GGCAGUG	ENSMUST00000031262.9|Coq2|ENSMUSG00000029319.9|coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
mm39_v1_chr11_+_68979332_68979380	0.807451	GGCAGUG	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr10_-_80895949_80896039	0.725328	GGCAGUG	ENSMUST00000219401.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000220317.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000005067.6|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	ENSMUST00000218208.2|Sgta|ENSMUSG00000004937.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm39_v1_chr9_-_101128976_101129003	0.722427	GGCAGUG	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr17_-_47998953_47999108	0.652506	GGCAGUG	ENSMUST00000113301.2|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6	ENSMUST00000113302.10|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6
mm39_v1_chr14_+_20344765_20344814	0.622322	GGCAGUG	ENSMUST00000223663.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000022343.6|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000224066.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000223941.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000224311.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13
mm39_v1_chr11_+_75521800_75521902	0.605858	GGCAGUG	ENSMUST00000006286.9|Inpp5k|ENSMUSG00000006127.10|inositol polyphosphate 5-phosphatase K
mm39_v1_chr1_-_161704224_161704251	0.596156	GGCAGUG	ENSMUST00000048377.11|Suco|ENSMUSG00000040297.13|SUN domain containing ossification factor
mm39_v1_chr6_-_146536025_146536110	0.591967	GGCAGUG	ENSMUST00000037709.16|Tm7sf3|ENSMUSG00000040234.17|transmembrane 7 superfamily member 3
mm39_v1_chr2_+_58991352_58991398	0.52592	GGCAGUG	ENSMUST00000037903.15|Pkp4|ENSMUSG00000026991.21|plakophilin 4
mm39_v1_chr10_+_80441855_80441855	0.525729	GGCAGUG	ENSMUST00000178231.2|Gm49322|ENSMUSG00000035370.10|predicted gene, 49322
mm39_v1_chr14_-_122703089_122703089	0.493548	GGCAGUG	ENSMUST00000039118.7|Zic5|ENSMUSG00000041703.8|zinc finger protein of the cerebellum 5
mm39_v1_chr7_+_120442048_120442060	0.491813	GGCAGUG	ENSMUST00000047875.16|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase
mm39_v1_chr13_+_55357585_55357602	0.469408	GGCAGUG	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr1_-_9818601_9818676	0.460614	GGCAGUG	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chrX_-_12539778_12539907	0.455046	GGCAGUG	ENSMUST00000060108.7|1810030O07Rik|ENSMUSG00000044148.7|RIKEN cDNA 1810030O07 gene
mm39_v1_chr1_-_151965876_151965918	0.443965	GGCAGUG	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr11_+_87989972_87990009	0.425266	GGCAGUG	ENSMUST00000018522.13|Cuedc1|ENSMUSG00000018378.14|CUE domain containing 1
mm39_v1_chr6_+_47854138_47854138	0.372517	GGCAGUG	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chrX_-_73412078_73412279	0.35903	GGCAGUG	ENSMUST00000155676.8|Ubl4a|ENSMUSG00000015290.16|ubiquitin-like 4A
mm39_v1_chr8_-_123425805_123425859	0.326633	GGCAGUG	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr6_+_122796847_122796897	0.31616	GGCAGUG	ENSMUST00000003238.14|Foxj2|ENSMUSG00000003154.16|forkhead box J2
mm39_v1_chr15_+_66449385_66449487	0.28692	GGCAGUG	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr2_-_39080701_39080762	0.203871	GGCAGUG	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr17_+_46694646_46694718	0.190027	GGCAGUG	ENSMUST00000113481.9|Zfp318|ENSMUSG00000015597.18|zinc finger protein 318	ENSMUST00000138127.8|Zfp318|ENSMUSG00000015597.18|zinc finger protein 318
mm39_v1_chr2_-_25873189_25873304	0.162111	GGCAGUG	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr7_-_67294943_67295021	0.155244	GGCAGUG	ENSMUST00000190276.7|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000032775.12|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000053950.10|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28	ENSMUST00000189836.2|Lrrc28|ENSMUSG00000030556.14|leucine rich repeat containing 28
mm39_v1_chr3_+_95496239_95496264	0.14816	GGCAGUG	ENSMUST00000177390.8|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000060323.12|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000098861.11|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like
mm39_v1_chr12_-_111874489_111874559	0.125611	GGCAGUG	ENSMUST00000054815.15|Ppp1r13b|ENSMUSG00000021285.16|protein phosphatase 1, regulatory subunit 13B
mm39_v1_chrX_-_102865546_102865598	0.121734	GGCAGUG	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr1_-_156767123_156767186	0.0874932	GGCAGUG	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr11_+_5905693_5905822	0.0838005	GGCAGUG	ENSMUST00000002818.9|Ykt6|ENSMUSG00000002741.10|YKT6 v-SNARE homolog (S. cerevisiae)
mm39_v1_chr1_-_132953068_132953154	0.0758388	GGCAGUG	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr1_+_43137852_43137871	0.0658472	GGCAGUG	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr7_+_116980173_116980249	0.0424706	GGCAGUG	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr2_-_152239966_152239997	0.0321132	GGCAGUG	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr8_+_84748073_84748104	0.0192872	GGCAGUG	ENSMUST00000055077.7|Palm3|ENSMUSG00000047986.13|paralemmin 3
