mm39_v1_chr18_+_64473091_64473114	1.79862	GUAACAG	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr12_-_57592907_57592926	1.15683	GUAACAG	ENSMUST00000044380.8|Foxa1|ENSMUSG00000035451.8|forkhead box A1
mm39_v1_chr7_+_112278520_112278532	1.15611	GUAACAG	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr16_+_42727926_42728047	1.13803	GUAACAG	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr2_+_155223728_155223804	0.668961	GUAACAG	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr8_-_96615138_96615175	0.658613	GUAACAG	ENSMUST00000034097.8|Got2|ENSMUSG00000031672.9|glutamatic-oxaloacetic transaminase 2, mitochondrial
mm39_v1_chr13_-_36918424_36918466	0.649733	GUAACAG	ENSMUST00000037623.15|Nrn1|ENSMUSG00000039114.17|neuritin 1
mm39_v1_chr10_-_61288437_61288589	0.623544	GUAACAG	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr9_+_118435755_118435823	0.578723	GUAACAG	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr7_+_27290969_27290981	0.542578	GUAACAG	ENSMUST00000108344.9|Akt2|ENSMUSG00000004056.16|thymoma viral proto-oncogene 2
mm39_v1_chr6_+_145156860_145156933	0.532792	GUAACAG	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr8_-_89770790_89770823	0.528979	GUAACAG	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr16_+_43960183_43960263	0.511398	GUAACAG	ENSMUST00000159514.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000161326.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063520.15|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063542.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm39_v1_chr7_-_25358406_25358406	0.501596	GUAACAG	ENSMUST00000071329.8|Bckdha|ENSMUSG00000060376.8|branched chain ketoacid dehydrogenase E1, alpha polypeptide
mm39_v1_chr18_-_16942289_16942384	0.50014	GUAACAG	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr8_-_26609153_26609260	0.493389	GUAACAG	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr8_-_45715049_45715095	0.492074	GUAACAG	ENSMUST00000034064.5|F11|ENSMUSG00000031645.5|coagulation factor XI
mm39_v1_chr10_-_95252712_95252723	0.486989	GUAACAG	ENSMUST00000020215.16|Socs2|ENSMUSG00000020027.19|suppressor of cytokine signaling 2
mm39_v1_chr19_-_23425757_23425768	0.472793	GUAACAG	ENSMUST00000036069.8|Mamdc2|ENSMUSG00000033207.8|MAM domain containing 2
mm39_v1_chr14_-_70757601_70757628	0.467779	GUAACAG	ENSMUST00000022693.9|Bmp1|ENSMUSG00000022098.11|bone morphogenetic protein 1
mm39_v1_chr12_+_71877838_71877948	0.459534	GUAACAG	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chrX_+_100419965_100419984	0.456763	GUAACAG	ENSMUST00000119080.8|Gjb1|ENSMUSG00000047797.15|gap junction protein, beta 1
mm39_v1_chr8_+_129085719_129085787	0.446995	GUAACAG	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr2_-_164285097_164285114	0.446769	GUAACAG	ENSMUST00000017153.4|Sdc4|ENSMUSG00000017009.4|syndecan 4
mm39_v1_chr1_-_45964730_45964749	0.446544	GUAACAG	ENSMUST00000027137.11|Slc40a1|ENSMUSG00000025993.11|solute carrier family 40 (iron-regulated transporter), member 1
mm39_v1_chr2_+_119156265_119156298	0.40336	GUAACAG	ENSMUST00000102517.4|Dll4|ENSMUSG00000027314.7|delta like canonical Notch ligand 4
mm39_v1_chr15_+_38869415_38869443	0.379399	GUAACAG	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr11_+_83741657_83741681	0.37428	GUAACAG	ENSMUST00000021016.10|Hnf1b|ENSMUSG00000020679.12|HNF1 homeobox B
mm39_v1_chr14_+_14296748_14296783	0.35979	GUAACAG	ENSMUST00000022268.10|Pdhb|ENSMUSG00000021748.10|pyruvate dehydrogenase (lipoamide) beta
mm39_v1_chr9_-_101128976_101129003	0.356747	GUAACAG	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr8_+_121811091_121811125	0.353369	GUAACAG	ENSMUST00000181504.2|Foxf1|ENSMUSG00000042812.6|forkhead box F1
mm39_v1_chr11_-_88609048_88609136	0.344344	GUAACAG	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr1_-_10038030_10038157	0.34392	GUAACAG	ENSMUST00000185184.2|Tcf24|ENSMUSG00000099032.3|transcription factor 24
mm39_v1_chr1_-_4566619_4566643	0.33775	GUAACAG	ENSMUST00000192913.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000027035.10|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chr2_+_4886298_4886395	0.3325	GUAACAG	ENSMUST00000027973.14|Sephs1|ENSMUSG00000026662.14|selenophosphate synthetase 1
mm39_v1_chr11_-_106811507_106811599	0.329722	GUAACAG	ENSMUST00000103067.10|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chr12_+_3857001_3857064	0.324685	GUAACAG	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr7_-_115637970_115637985	0.322029	GUAACAG	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr2_-_63928339_63928367	0.321775	GUAACAG	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr7_-_127490139_127490144	0.305917	GUAACAG	ENSMUST00000205300.2|Prss53|ENSMUSG00000044139.13|protease, serine 53	ENSMUST00000121394.3|Prss53|ENSMUSG00000044139.13|protease, serine 53
mm39_v1_chr15_-_58953838_58953867	0.303882	GUAACAG	ENSMUST00000080371.8|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr5_-_25703700_25703841	0.301786	GUAACAG	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr15_+_58805605_58805685	0.293172	GUAACAG	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr6_+_146789978_146790087	0.276862	GUAACAG	ENSMUST00000016631.14|Ppfibp1|ENSMUSG00000016487.16|PTPRF interacting protein, binding protein 1 (liprin beta 1)	ENSMUST00000203730.3|Ppfibp1|ENSMUSG00000016487.16|PTPRF interacting protein, binding protein 1 (liprin beta 1)	ENSMUST00000111623.9|Ppfibp1|ENSMUSG00000016487.16|PTPRF interacting protein, binding protein 1 (liprin beta 1)
mm39_v1_chr5_+_91039092_91039112	0.272813	GUAACAG	ENSMUST00000031327.9|Cxcl1|ENSMUSG00000029380.12|chemokine (C-X-C motif) ligand 1
mm39_v1_chr19_-_10217968_10218125	0.272264	GUAACAG	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr10_+_39608094_39608137	0.264472	GUAACAG	ENSMUST00000019986.13|Rev3l|ENSMUSG00000019841.16|REV3 like, DNA directed polymerase zeta catalytic subunit
mm39_v1_chr14_-_22039543_22039669	0.25499	GUAACAG	ENSMUST00000043409.9|Zfp503|ENSMUSG00000039081.11|zinc finger protein 503
mm39_v1_chrX_-_162810959_162810993	0.253315	GUAACAG	ENSMUST00000033739.5|Car5b|ENSMUSG00000031373.5|carbonic anhydrase 5b, mitochondrial
mm39_v1_chr7_-_45750153_45750194	0.250769	GUAACAG	ENSMUST00000180081.3|Kcnj11|ENSMUSG00000096146.3|potassium inwardly rectifying channel, subfamily J, member 11
mm39_v1_chr19_+_36532061_36532115	0.249935	GUAACAG	ENSMUST00000169036.9|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2	ENSMUST00000047247.12|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2
mm39_v1_chr11_-_96807273_96807355	0.248498	GUAACAG	ENSMUST00000103152.11|Cdk5rap3|ENSMUSG00000018669.15|CDK5 regulatory subunit associated protein 3
mm39_v1_chr18_+_5591864_5591902	0.24205	GUAACAG	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr2_-_160950936_160950950	0.239152	GUAACAG	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr7_+_18828519_18828558	0.237306	GUAACAG	ENSMUST00000049454.6|Six5|ENSMUSG00000040841.6|sine oculis-related homeobox 5
mm39_v1_chr2_-_75534985_75535023	0.236015	GUAACAG	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr10_-_40178182_40178196	0.231378	GUAACAG	ENSMUST00000099945.6|Amd1|ENSMUSG00000075232.7|S-adenosylmethionine decarboxylase 1	ENSMUST00000238953.2|Amd1|ENSMUSG00000075232.7|S-adenosylmethionine decarboxylase 1	ENSMUST00000238969.2|Amd1|ENSMUSG00000075232.7|S-adenosylmethionine decarboxylase 1
mm39_v1_chr4_-_134262509_134262625	0.231009	GUAACAG	ENSMUST00000102550.10|Mtfr1l|ENSMUSG00000046671.19|mitochondrial fission regulator 1-like
mm39_v1_chr14_+_65596070_65596135	0.227485	GUAACAG	ENSMUST00000066994.7|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr6_-_72876882_72876980	0.21847	GUAACAG	ENSMUST00000068697.11|Kcmf1|ENSMUSG00000055239.11|potassium channel modulatory factor 1
mm39_v1_chr10_+_111000613_111000627	0.214225	GUAACAG	ENSMUST00000105275.9|Osbpl8|ENSMUSG00000020189.16|oxysterol binding protein-like 8
mm39_v1_chr11_-_100713348_100713405	0.21405	GUAACAG	ENSMUST00000107358.9|Stat5b|ENSMUSG00000020919.12|signal transducer and activator of transcription 5B
mm39_v1_chr7_-_24672083_24672179	0.209104	GUAACAG	ENSMUST00000076961.9|Rabac1|ENSMUSG00000003380.12|Rab acceptor 1 (prenylated)
mm39_v1_chr2_-_179618439_179618458	0.206361	GUAACAG	ENSMUST00000041618.13|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4	ENSMUST00000227325.2|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4
mm39_v1_chr5_-_21156766_21156824	0.202606	GUAACAG	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr19_+_57349112_57349136	0.201542	GUAACAG	ENSMUST00000036407.6|Fam160b1|ENSMUSG00000033478.6|family with sequence similarity 160, member B1
mm39_v1_chr11_-_84416340_84416369	0.197775	GUAACAG	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr2_+_49341498_49341571	0.197071	GUAACAG	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr3_-_58433313_58433318	0.191922	GUAACAG	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr2_-_74489763_74489901	0.190487	GUAACAG	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr10_-_117681864_117681940	0.190194	GUAACAG	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr10_-_121933276_121933276	0.188716	GUAACAG	ENSMUST00000140299.3|Rxylt1|ENSMUSG00000034620.18|ribitol xylosyltransferase 1
mm39_v1_chr12_+_59178072_59178255	0.188545	GUAACAG	ENSMUST00000176464.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000170992.9|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000176322.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr15_+_81284333_81284417	0.186407	GUAACAG	ENSMUST00000163754.9|Xpnpep3|ENSMUSG00000022401.13|X-prolyl aminopeptidase 3, mitochondrial	ENSMUST00000041609.11|Xpnpep3|ENSMUSG00000022401.13|X-prolyl aminopeptidase 3, mitochondrial
mm39_v1_chr19_+_6096606_6096692	0.179956	GUAACAG	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr1_+_183766572_183766583	0.178492	GUAACAG	ENSMUST00000048655.8|Dusp10|ENSMUSG00000039384.9|dual specificity phosphatase 10
mm39_v1_chr2_+_74656145_74656223	0.177338	GUAACAG	ENSMUST00000028511.8|Mtx2|ENSMUSG00000027099.10|metaxin 2
mm39_v1_chr11_-_95966477_95966516	0.173695	GUAACAG	ENSMUST00000090541.12|Atp5g1|ENSMUSG00000006057.16|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
mm39_v1_chr11_-_29464998_29465043	0.168915	GUAACAG	ENSMUST00000133103.2|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1	ENSMUST00000039900.4|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1
mm39_v1_chr2_+_69727563_69727591	0.168174	GUAACAG	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr4_+_80828883_80828922	0.167791	GUAACAG	ENSMUST00000055922.4|Lurap1l|ENSMUSG00000048706.4|leucine rich adaptor protein 1-like
mm39_v1_chr8_+_79235946_79236030	0.166893	GUAACAG	ENSMUST00000209490.2|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	ENSMUST00000034111.10|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm39_v1_chr13_+_95012107_95012119	0.166698	GUAACAG	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr3_+_34074048_34074092	0.166623	GUAACAG	ENSMUST00000001620.13|Fxr1|ENSMUSG00000027680.16|fragile X mental retardation gene 1, autosomal homolog
mm39_v1_chr5_+_124678758_124678849	0.163508	GUAACAG	ENSMUST00000060226.11|Tmed2|ENSMUSG00000029390.14|transmembrane p24 trafficking protein 2
mm39_v1_chr18_+_82928959_82929005	0.16296	GUAACAG	ENSMUST00000171238.8|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr10_-_23225781_23225817	0.162284	GUAACAG	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr4_-_129229159_129229170	0.158659	GUAACAG	ENSMUST00000102598.4|Rbbp4|ENSMUSG00000057236.11|retinoblastoma binding protein 4, chromatin remodeling factor
mm39_v1_chr4_-_109333866_109333924	0.158073	GUAACAG	ENSMUST00000030284.10|Rnf11|ENSMUSG00000028557.11|ring finger protein 11
mm39_v1_chr7_+_120276801_120276868	0.155285	GUAACAG	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr5_+_102629240_102629257	0.154776	GUAACAG	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chrX_+_81992467_81992521	0.151806	GUAACAG	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr13_-_99027544_99027571	0.151186	GUAACAG	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr12_+_111005768_111005834	0.14928	GUAACAG	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr5_-_135378896_135378903	0.149123	GUAACAG	ENSMUST00000201534.2|Fkbp6|ENSMUSG00000040013.12|FK506 binding protein 6	ENSMUST00000044972.11|Fkbp6|ENSMUSG00000040013.12|FK506 binding protein 6
mm39_v1_chr3_+_58322119_58322161	0.143461	GUAACAG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr1_+_131838294_131838310	0.139716	GUAACAG	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr17_+_74835290_74835369	0.13971	GUAACAG	ENSMUST00000180037.8|Birc6|ENSMUSG00000024073.17|baculoviral IAP repeat-containing 6
mm39_v1_chr3_-_51184895_51184996	0.137286	GUAACAG	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr16_+_34842764_34842811	0.13328	GUAACAG	ENSMUST00000061156.10|Hacd2|ENSMUSG00000035376.11|3-hydroxyacyl-CoA dehydratase 2
mm39_v1_chr3_+_135144202_135144241	0.131675	GUAACAG	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr2_+_30842966_30843028	0.120939	GUAACAG	ENSMUST00000028199.12|Tor1b|ENSMUSG00000026848.15|torsin family 1, member B
mm39_v1_chr13_-_47083194_47083276	0.120398	GUAACAG	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
mm39_v1_chr19_+_7471398_7471460	0.119273	GUAACAG	ENSMUST00000170373.9|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000236308.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000235557.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3
mm39_v1_chr17_+_75312520_75312563	0.117187	GUAACAG	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr5_-_21260878_21260960	0.115025	GUAACAG	ENSMUST00000030556.8|Ptpn12|ENSMUSG00000028771.14|protein tyrosine phosphatase, non-receptor type 12
mm39_v1_chr14_+_34395845_34395890	0.110555	GUAACAG	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr14_+_123897383_123897621	0.109771	GUAACAG	ENSMUST00000049681.14|Itgbl1|ENSMUSG00000032925.17|integrin, beta-like 1
mm39_v1_chr9_+_44516140_44516218	0.108771	GUAACAG	ENSMUST00000170489.2|Ddx6|ENSMUSG00000032097.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	ENSMUST00000217034.2|Ddx6|ENSMUSG00000032097.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm39_v1_chr13_-_38712387_38712466	0.107771	GUAACAG	ENSMUST00000035988.16|Txndc5|ENSMUSG00000038991.18|thioredoxin domain containing 5
mm39_v1_chr1_+_93163553_93163569	0.107256	GUAACAG	ENSMUST00000062202.14|Sned1|ENSMUSG00000047793.14|sushi, nidogen and EGF-like domains 1
mm39_v1_chr18_+_35731658_35731729	0.106588	GUAACAG	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr10_+_51553852_51553906	0.106316	GUAACAG	ENSMUST00000122922.10|Rfx6|ENSMUSG00000019900.20|regulatory factor X, 6	ENSMUST00000219364.2|Rfx6|ENSMUSG00000019900.20|regulatory factor X, 6
mm39_v1_chr9_+_47441471_47441671	0.105175	GUAACAG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr3_-_32791296_32791296	0.10462	GUAACAG	ENSMUST00000043966.8|Mrpl47|ENSMUSG00000037531.9|mitochondrial ribosomal protein L47
mm39_v1_chr13_+_96679233_96679283	0.104575	GUAACAG	ENSMUST00000077672.12|Cert1|ENSMUSG00000021669.16|ceramide transporter 1	ENSMUST00000109444.3|Cert1|ENSMUSG00000021669.16|ceramide transporter 1
mm39_v1_chr7_-_110682204_110682244	0.101212	GUAACAG	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr5_-_124387812_124387845	0.0972254	GUAACAG	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr8_-_69848167_69848205	0.0970239	GUAACAG	ENSMUST00000072427.7|Gm10033|ENSMUSG00000110444.3|predicted gene 10033	ENSMUST00000213012.2|Gm10033|ENSMUSG00000110444.3|predicted gene 10033	ENSMUST00000239456.2|Gm10033|ENSMUSG00000110444.3|predicted gene 10033
mm39_v1_chr12_-_85421467_85421621	0.0967732	GUAACAG	ENSMUST00000040766.9|Tmed10|ENSMUSG00000021248.10|transmembrane p24 trafficking protein 10
mm39_v1_chr7_+_58878490_58878518	0.0965955	GUAACAG	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr16_-_62607105_62607161	0.0962666	GUAACAG	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr1_+_191638854_191638879	0.0950715	GUAACAG	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chrX_+_10583629_10583730	0.0924611	GUAACAG	ENSMUST00000115524.8|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	ENSMUST00000008179.7|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	ENSMUST00000156321.2|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm39_v1_chr14_-_20844074_20844166	0.0897378	GUAACAG	ENSMUST00000080440.14|Camk2g|ENSMUSG00000021820.19|calcium/calmodulin-dependent protein kinase II gamma	ENSMUST00000100837.11|Camk2g|ENSMUSG00000021820.19|calcium/calmodulin-dependent protein kinase II gamma	ENSMUST00000071816.7|Camk2g|ENSMUSG00000021820.19|calcium/calmodulin-dependent protein kinase II gamma
mm39_v1_chr2_+_32041083_32041274	0.0844911	GUAACAG	ENSMUST00000036691.14|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B	ENSMUST00000069817.15|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B
mm39_v1_chr7_-_99508117_99508184	0.0836571	GUAACAG	ENSMUST00000209032.2|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)	ENSMUST00000036274.8|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm39_v1_chr13_+_49495025_49495099	0.0829505	GUAACAG	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr6_-_148113872_148113889	0.0829487	GUAACAG	ENSMUST00000136008.8|Ergic2|ENSMUSG00000030304.12|ERGIC and golgi 2
mm39_v1_chrX_-_37653396_37653432	0.0796527	GUAACAG	ENSMUST00000016681.15|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr15_-_96358612_96358724	0.0781499	GUAACAG	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr4_-_122854966_122854986	0.0764541	GUAACAG	ENSMUST00000030408.12|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A	ENSMUST00000127047.2|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A
mm39_v1_chr10_-_35587888_35587888	0.0749627	GUAACAG	ENSMUST00000080898.4|Amd2|ENSMUSG00000063953.4|S-adenosylmethionine decarboxylase 2
mm39_v1_chr5_+_124577952_124578061	0.0729604	GUAACAG	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr2_-_35994072_35994085	0.069602	GUAACAG	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr1_-_39844467_39844493	0.0694304	GUAACAG	ENSMUST00000171319.4|Gm3646|ENSMUSG00000091937.4|predicted gene 3646
mm39_v1_chr13_+_55740948_55740990	0.0692966	GUAACAG	ENSMUST00000109905.5|Tmed9|ENSMUSG00000058569.9|transmembrane p24 trafficking protein 9
mm39_v1_chr15_-_38079089_38079100	0.0685086	GUAACAG	ENSMUST00000110336.4|Ubr5|ENSMUSG00000037487.8|ubiquitin protein ligase E3 component n-recognin 5
mm39_v1_chr5_+_103573367_103573367	0.0663595	GUAACAG	ENSMUST00000048957.11|Ptpn13|ENSMUSG00000034573.15|protein tyrosine phosphatase, non-receptor type 13
mm39_v1_chr3_-_104960437_104960467	0.0663423	GUAACAG	ENSMUST00000077548.12|Cttnbp2nl|ENSMUSG00000062127.12|CTTNBP2 N-terminal like
mm39_v1_chr2_-_18397547_18397649	0.0660788	GUAACAG	ENSMUST00000091418.12|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1	ENSMUST00000166495.8|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1
mm39_v1_chr2_-_156728988_156729003	0.0655975	GUAACAG	ENSMUST00000029164.9|Sla2|ENSMUSG00000027636.12|Src-like-adaptor 2
mm39_v1_chr6_+_8259379_8259404	0.0652554	GUAACAG	ENSMUST00000162034.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr3_-_89325594_89325690	0.0652292	GUAACAG	ENSMUST00000029679.4|Cks1b|ENSMUSG00000028044.7|CDC28 protein kinase 1b
mm39_v1_chr11_-_82719850_82719869	0.0635234	GUAACAG	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr5_-_144902598_144902687	0.0619535	GUAACAG	ENSMUST00000110677.8|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1	ENSMUST00000085684.11|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1	ENSMUST00000100461.7|Smurf1|ENSMUSG00000038780.15|SMAD specific E3 ubiquitin protein ligase 1
mm39_v1_chr3_-_141687987_141688025	0.0618616	GUAACAG	ENSMUST00000029948.15|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr17_-_65920481_65920550	0.0608741	GUAACAG	ENSMUST00000024897.10|Vapa|ENSMUSG00000024091.10|vesicle-associated membrane protein, associated protein A
mm39_v1_chr1_+_90981144_90981242	0.0605465	GUAACAG	ENSMUST00000068167.13|Lrrfip1|ENSMUSG00000026305.16|leucine rich repeat (in FLII) interacting protein 1	ENSMUST00000097649.10|Lrrfip1|ENSMUSG00000026305.16|leucine rich repeat (in FLII) interacting protein 1	ENSMUST00000186762.7|Lrrfip1|ENSMUSG00000026305.16|leucine rich repeat (in FLII) interacting protein 1	ENSMUST00000097650.10|Lrrfip1|ENSMUSG00000026305.16|leucine rich repeat (in FLII) interacting protein 1
mm39_v1_chr9_+_72714156_72714156	0.0541399	GUAACAG	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr12_-_21423551_21423594	0.0505644	GUAACAG	ENSMUST00000101551.10|Adam17|ENSMUSG00000052593.17|a disintegrin and metallopeptidase domain 17
mm39_v1_chr5_-_52347826_52347869	0.0497886	GUAACAG	ENSMUST00000199321.5|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15	ENSMUST00000195922.2|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15	ENSMUST00000031061.12|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm39_v1_chr1_+_132345293_132345348	0.0467858	GUAACAG	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr18_-_77801624_77801673	0.0415702	GUAACAG	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr12_-_84265609_84265663	0.0396974	GUAACAG	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr8_+_108020092_108020118	0.0381427	GUAACAG	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr4_-_108637979_108638000	0.0377086	GUAACAG	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr8_+_85897951_85897951	0.0375313	GUAACAG	ENSMUST00000076896.6|Cks1brt|ENSMUSG00000062687.7|CDC28 protein kinase 1b, retrogene
mm39_v1_chr5_-_123038329_123038438	0.0358351	GUAACAG	ENSMUST00000031435.14|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr12_-_102844537_102844709	0.0350026	GUAACAG	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr9_-_50571080_50571107	0.0333377	GUAACAG	ENSMUST00000034567.4|Dlat|ENSMUSG00000000168.11|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm39_v1_chr16_+_11140740_11140775	0.0308212	GUAACAG	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr1_-_86287080_86287122	0.030651	GUAACAG	ENSMUST00000027438.8|Ncl|ENSMUSG00000026234.13|nucleolin
mm39_v1_chr12_-_100486950_100487112	0.0298627	GUAACAG	ENSMUST00000223020.2|Ttc7b|ENSMUSG00000033530.9|tetratricopeptide repeat domain 7B	ENSMUST00000062957.8|Ttc7b|ENSMUSG00000033530.9|tetratricopeptide repeat domain 7B
mm39_v1_chr9_+_7184514_7184572	0.0292403	GUAACAG	ENSMUST00000215683.2|Dcun1d5|ENSMUSG00000032002.11|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	ENSMUST00000034499.10|Dcun1d5|ENSMUSG00000032002.11|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
mm39_v1_chr11_-_116197523_116197576	0.028304	GUAACAG	ENSMUST00000133468.2|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000106411.10|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000106413.10|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000021147.14|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7
mm39_v1_chr3_+_99048379_99048388	0.0267711	GUAACAG	ENSMUST00000004343.7|Wars2|ENSMUSG00000004233.15|tryptophanyl tRNA synthetase 2 (mitochondrial)
mm39_v1_chr18_+_10725532_10725564	0.0256959	GUAACAG	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr14_+_121272950_121272990	0.0232302	GUAACAG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr16_+_32219324_32219324	0.0213469	GUAACAG	ENSMUST00000115149.3|Tm4sf19|ENSMUSG00000079625.3|transmembrane 4 L six family member 19
mm39_v1_chr9_+_70450130_70450152	0.0201021	GUAACAG	ENSMUST00000049263.9|Sltm|ENSMUSG00000032212.11|SAFB-like, transcription modulator
mm39_v1_chr13_+_84370405_84370483	0.0159098	GUAACAG	ENSMUST00000057495.10|Tmem161b|ENSMUSG00000035762.12|transmembrane protein 161B	ENSMUST00000225069.2|Tmem161b|ENSMUSG00000035762.12|transmembrane protein 161B
mm39_v1_chr6_+_51500881_51500915	0.0143442	GUAACAG	ENSMUST00000049152.15|Snx10|ENSMUSG00000038301.16|sorting nexin 10
mm39_v1_chr7_-_109585649_109585676	0.0136577	GUAACAG	ENSMUST00000094097.12|Tmem41b|ENSMUSG00000047554.15|transmembrane protein 41B
mm39_v1_chr1_-_64776890_64776915	0.0123734	GUAACAG	ENSMUST00000116133.4|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5	ENSMUST00000063982.7|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5
mm39_v1_chr7_-_133826817_133826865	0.0122067	GUAACAG	ENSMUST00000067680.11|Adam12|ENSMUSG00000054555.12|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm39_v1_chr5_-_64126194_64126247	0.0107621	GUAACAG	ENSMUST00000154169.4|Rell1|ENSMUSG00000047881.15|RELT-like 1
mm39_v1_chr10_-_128727542_128727587	0.00953193	GUAACAG	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr1_+_166828982_166828999	0.00564996	GUAACAG	ENSMUST00000165874.8|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B	ENSMUST00000190081.7|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B
mm39_v1_chr18_+_65564009_65564041	0.00057995	GUAACAG	ENSMUST00000224056.3|Malt1|ENSMUSG00000032688.10|MALT1 paracaspase	ENSMUST00000049248.7|Malt1|ENSMUSG00000032688.10|MALT1 paracaspase
