mm39_v1_chr17_-_32074754_32074780	8.10342	GUAGUGU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr11_+_115714853_115714923	6.57932	GUAGUGU	ENSMUST00000103032.11|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000133250.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000177736.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component
mm39_v1_chr5_+_65127412_65127432	6.23796	GUAGUGU	ENSMUST00000031080.15|Fam114a1|ENSMUSG00000029185.15|family with sequence similarity 114, member A1
mm39_v1_chr12_-_55033113_55033128	5.24009	GUAGUGU	ENSMUST00000038926.13|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr2_-_169973076_169973140	5.13878	GUAGUGU	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr19_+_41471067_41471128	4.81932	GUAGUGU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_-_73056713_73056822	4.39507	GUAGUGU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr16_+_42727926_42728047	4.16491	GUAGUGU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr13_+_81031512_81031543	4.13474	GUAGUGU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr15_-_96953823_96953845	3.96998	GUAGUGU	ENSMUST00000023101.10|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr2_-_103133524_103133623	3.848	GUAGUGU	ENSMUST00000090475.10|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chr12_+_33003882_33003890	3.82713	GUAGUGU	ENSMUST00000076698.13|Sypl|ENSMUSG00000020570.16|synaptophysin-like protein
mm39_v1_chr16_+_87495792_87495872	3.77404	GUAGUGU	ENSMUST00000026703.6|Bach1|ENSMUSG00000025612.6|BTB and CNC homology 1, basic leucine zipper transcription factor 1
mm39_v1_chr5_+_103902020_103902056	3.58499	GUAGUGU	ENSMUST00000054979.10|Aff1|ENSMUSG00000029313.19|AF4/FMR2 family, member 1
mm39_v1_chr7_+_18828519_18828558	3.56445	GUAGUGU	ENSMUST00000049454.6|Six5|ENSMUSG00000040841.6|sine oculis-related homeobox 5
mm39_v1_chr11_-_88609048_88609136	3.51528	GUAGUGU	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr15_-_102165884_102165952	3.49449	GUAGUGU	ENSMUST00000043172.15|Rarg|ENSMUSG00000001288.16|retinoic acid receptor, gamma
mm39_v1_chr5_-_148989821_148989863	3.36672	GUAGUGU	ENSMUST00000139443.8|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1	ENSMUST00000085546.13|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1
mm39_v1_chr13_-_113755082_113755101	3.35827	GUAGUGU	ENSMUST00000109241.5|Snx18|ENSMUSG00000042364.12|sorting nexin 18
mm39_v1_chrX_-_7054952_7054981	3.34794	GUAGUGU	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr15_+_10177709_10177741	2.81024	GUAGUGU	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr15_-_77726333_77726375	2.60103	GUAGUGU	ENSMUST00000016771.13|Myh9|ENSMUSG00000022443.18|myosin, heavy polypeptide 9, non-muscle
mm39_v1_chr12_-_51876282_51876336	2.57777	GUAGUGU	ENSMUST00000042052.9|Hectd1|ENSMUSG00000035247.17|HECT domain E3 ubiquitin protein ligase 1	ENSMUST00000179265.8|Hectd1|ENSMUSG00000035247.17|HECT domain E3 ubiquitin protein ligase 1
mm39_v1_chr17_+_53873964_53874050	2.56846	GUAGUGU	ENSMUST00000000724.15|Kat2b|ENSMUSG00000000708.15|K(lysine) acetyltransferase 2B
mm39_v1_chr19_+_43600738_43600764	2.53383	GUAGUGU	ENSMUST00000057178.11|Nkx2-3|ENSMUSG00000044220.14|NK2 homeobox 3
mm39_v1_chr2_-_60793536_60793595	2.49163	GUAGUGU	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr10_-_37014859_37014933	2.37354	GUAGUGU	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr10_-_7831979_7832035	2.34152	GUAGUGU	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr7_+_44667377_44667433	2.33229	GUAGUGU	ENSMUST00000044111.10|Rras|ENSMUSG00000038387.10|related RAS viral (r-ras) oncogene
mm39_v1_chr1_-_151304191_151304225	2.26128	GUAGUGU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr3_+_9315662_9315662	2.23028	GUAGUGU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr3_+_65435825_65435876	2.20159	GUAGUGU	ENSMUST00000047906.10|Tiparp|ENSMUSG00000034640.10|TCDD-inducible poly(ADP-ribose) polymerase
mm39_v1_chr8_-_80784619_80784646	2.1911	GUAGUGU	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr5_+_143389573_143389642	1.99376	GUAGUGU	ENSMUST00000110731.4|Kdelr2|ENSMUSG00000079111.4|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm39_v1_chr17_-_84495364_84495381	1.98826	GUAGUGU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr16_+_10306075_10306143	1.97969	GUAGUGU	ENSMUST00000023147.8|Ciita|ENSMUSG00000022504.11|class II transactivator
mm39_v1_chr4_+_47353217_47353226	1.97753	GUAGUGU	ENSMUST00000007757.15|Tgfbr1|ENSMUSG00000007613.16|transforming growth factor, beta receptor I
mm39_v1_chr17_+_27276262_27276308	1.94187	GUAGUGU	ENSMUST00000049308.9|Itpr3|ENSMUSG00000042644.10|inositol 1,4,5-triphosphate receptor 3
mm39_v1_chr4_-_135749032_135749074	1.9393	GUAGUGU	ENSMUST00000030427.6|Eloa|ENSMUSG00000028668.6|elongin A
mm39_v1_chr18_-_88912446_88912497	1.91556	GUAGUGU	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chrX_-_13712746_13712826	1.86749	GUAGUGU	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr3_+_52175757_52175827	1.84854	GUAGUGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chrX_-_55643429_55643467	1.83959	GUAGUGU	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr18_+_66591604_66591675	1.78043	GUAGUGU	ENSMUST00000025399.9|Pmaip1|ENSMUSG00000024521.9|phorbol-12-myristate-13-acetate-induced protein 1	ENSMUST00000237161.2|Pmaip1|ENSMUSG00000024521.9|phorbol-12-myristate-13-acetate-induced protein 1	ENSMUST00000236933.2|Pmaip1|ENSMUSG00000024521.9|phorbol-12-myristate-13-acetate-induced protein 1
mm39_v1_chr18_-_39623698_39623771	1.75417	GUAGUGU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr9_-_90152759_90152898	1.73897	GUAGUGU	ENSMUST00000041767.14|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B	ENSMUST00000128874.3|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B
mm39_v1_chr12_-_102844537_102844709	1.64198	GUAGUGU	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr3_-_115800989_115801060	1.62136	GUAGUGU	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr9_-_43017249_43017322	1.59014	GUAGUGU	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr4_+_130390588_130390632	1.58668	GUAGUGU	ENSMUST00000030315.13|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1
mm39_v1_chr6_+_128339882_128340022	1.57173	GUAGUGU	ENSMUST00000073316.13|Foxm1|ENSMUSG00000001517.15|forkhead box M1
mm39_v1_chr3_+_88857929_88857975	1.55622	GUAGUGU	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr7_+_89779564_89779724	1.54773	GUAGUGU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr4_-_151142351_151142444	1.52695	GUAGUGU	ENSMUST00000030797.4|Vamp3|ENSMUSG00000028955.4|vesicle-associated membrane protein 3
mm39_v1_chr15_+_6737853_6737883	1.5099	GUAGUGU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr19_+_16110176_16110285	1.49084	GUAGUGU	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr8_-_94739469_94739479	1.43239	GUAGUGU	ENSMUST00000053766.14|Amfr|ENSMUSG00000031751.15|autocrine motility factor receptor
mm39_v1_chr3_-_41037427_41037481	1.39938	GUAGUGU	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chrX_+_100298134_100298186	1.39062	GUAGUGU	ENSMUST00000062000.6|Foxo4|ENSMUSG00000042903.9|forkhead box O4
mm39_v1_chr6_-_39702381_39702413	1.36673	GUAGUGU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr1_+_139349912_139350120	1.3408	GUAGUGU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr17_+_28128307_28128532	1.33789	GUAGUGU	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chrX_-_107877909_107877987	1.32469	GUAGUGU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr10_+_69932930_69933066	1.29631	GUAGUGU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr2_-_12306722_12306734	1.27909	GUAGUGU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr10_-_120312374_120312388	1.26139	GUAGUGU	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr9_-_101128976_101129003	1.23345	GUAGUGU	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr5_+_123532819_123532892	1.21753	GUAGUGU	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr2_-_45003270_45003296	1.18643	GUAGUGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr1_+_151631088_151631148	1.15392	GUAGUGU	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr1_-_37580084_37580128	1.15359	GUAGUGU	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr5_-_76452365_76452398	1.13415	GUAGUGU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr10_+_21870565_21870591	1.13046	GUAGUGU	ENSMUST00000020145.12|Sgk1|ENSMUSG00000019970.16|serum/glucocorticoid regulated kinase 1
mm39_v1_chr12_+_111540920_111540977	1.11455	GUAGUGU	ENSMUST00000075281.8|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3	ENSMUST00000084953.13|Mark3|ENSMUSG00000007411.17|MAP/microtubule affinity regulating kinase 3
mm39_v1_chr1_-_96799832_96799905	1.11061	GUAGUGU	ENSMUST00000071985.6|Slco4c1|ENSMUSG00000040693.8|solute carrier organic anion transporter family, member 4C1
mm39_v1_chr10_+_7556948_7556990	1.07746	GUAGUGU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr6_-_52185674_52185702	1.07485	GUAGUGU	ENSMUST00000062829.9|Hoxa6|ENSMUSG00000043219.10|homeobox A6
mm39_v1_chr10_-_127124718_127124787	1.06444	GUAGUGU	ENSMUST00000156208.2|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6	ENSMUST00000026476.13|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6
mm39_v1_chr5_-_143513732_143513791	1.04449	GUAGUGU	ENSMUST00000100489.4|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1	ENSMUST00000080537.14|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1
mm39_v1_chr15_-_94487751_94487770	1.00882	GUAGUGU	ENSMUST00000023087.13|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1	ENSMUST00000152590.2|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1
mm39_v1_chr2_+_6327431_6327478	0.999978	GUAGUGU	ENSMUST00000114937.8|Usp6nl|ENSMUSG00000039046.16|USP6 N-terminal like
mm39_v1_chr8_-_81607109_81607129	0.991534	GUAGUGU	ENSMUST00000034150.10|Gab1|ENSMUSG00000031714.10|growth factor receptor bound protein 2-associated protein 1
mm39_v1_chr17_+_36132567_36132586	0.956661	GUAGUGU	ENSMUST00000003635.7|Ier3|ENSMUSG00000003541.7|immediate early response 3
mm39_v1_chr13_+_38010203_38010291	0.891929	GUAGUGU	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr11_+_23206001_23206105	0.854008	GUAGUGU	ENSMUST00000020538.13|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000109551.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102870.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102869.8|Xpo1|ENSMUSG00000020290.15|exportin 1
mm39_v1_chr12_-_51738666_51738738	0.833332	GUAGUGU	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr2_+_155223728_155223804	0.796023	GUAGUGU	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr12_-_54909568_54909706	0.766996	GUAGUGU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr11_-_23447866_23447962	0.725522	GUAGUGU	ENSMUST00000128559.2|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2	ENSMUST00000147157.8|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2	ENSMUST00000109539.8|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2
mm39_v1_chr14_-_21102487_21102592	0.718714	GUAGUGU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr3_-_122413361_122413372	0.715259	GUAGUGU	ENSMUST00000239148.2|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162409.8|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like	ENSMUST00000162947.3|Fnbp1l|ENSMUSG00000039735.17|formin binding protein 1-like
mm39_v1_chr4_+_150366028_150366103	0.682909	GUAGUGU	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr4_-_82423985_82424044	0.680309	GUAGUGU	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr14_-_72947422_72947467	0.667702	GUAGUGU	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr7_+_138968988_138969077	0.655169	GUAGUGU	ENSMUST00000106098.8|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A	ENSMUST00000026550.14|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A
mm39_v1_chr9_-_44792575_44792621	0.654112	GUAGUGU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr15_-_9529898_9529932	0.611952	GUAGUGU	ENSMUST00000228782.2|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor	ENSMUST00000003981.6|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor
mm39_v1_chr2_-_166838018_166838029	0.600678	GUAGUGU	ENSMUST00000049412.12|Stau1|ENSMUSG00000039536.17|staufen double-stranded RNA binding protein 1
mm39_v1_chr3_-_144426076_144426097	0.5839	GUAGUGU	ENSMUST00000198254.5|Sh3glb1|ENSMUSG00000037062.14|SH3-domain GRB2-like B1 (endophilin)	ENSMUST00000163279.6|Sh3glb1|ENSMUSG00000037062.14|SH3-domain GRB2-like B1 (endophilin)
mm39_v1_chrX_+_18028814_18028897	0.561814	GUAGUGU	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr17_+_83658354_83658453	0.547472	GUAGUGU	ENSMUST00000096766.12|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000049503.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000112363.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000234460.2|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4
mm39_v1_chr12_-_91556761_91556783	0.514454	GUAGUGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr6_-_83418656_83418666	0.513869	GUAGUGU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr13_+_51562675_51562834	0.511952	GUAGUGU	ENSMUST00000087978.5|S1pr3|ENSMUSG00000067586.5|sphingosine-1-phosphate receptor 3
mm39_v1_chr12_+_16944896_16944904	0.500129	GUAGUGU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chrX_-_47297436_47297568	0.492839	GUAGUGU	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chr4_+_116578117_116578201	0.482394	GUAGUGU	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr4_+_44004437_44004455	0.454289	GUAGUGU	ENSMUST00000107846.10|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)
mm39_v1_chr1_+_131838294_131838310	0.453426	GUAGUGU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr15_-_4025190_4025253	0.438582	GUAGUGU	ENSMUST00000046633.10|AW549877|ENSMUSG00000041935.11|expressed sequence AW549877
mm39_v1_chr7_-_117842787_117842874	0.412203	GUAGUGU	ENSMUST00000032891.15|Smg1|ENSMUSG00000030655.16|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm39_v1_chrX_-_73067514_73067524	0.399846	GUAGUGU	ENSMUST00000033769.15|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114352.8|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000068286.12|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114360.10|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114354.10|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1
mm39_v1_chr7_-_144107401_144107533	0.394483	GUAGUGU	ENSMUST00000168134.10|Ppfia1|ENSMUSG00000037519.18|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm39_v1_chrX_+_68403900_68403996	0.381091	GUAGUGU	ENSMUST00000033532.7|Aff2|ENSMUSG00000031189.13|AF4/FMR2 family, member 2
mm39_v1_chr10_-_89279751_89279834	0.370847	GUAGUGU	ENSMUST00000219351.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000220128.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000099374.9|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000105298.3|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3
mm39_v1_chr7_-_66339319_66339351	0.370704	GUAGUGU	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr10_+_111309020_111309108	0.366137	GUAGUGU	ENSMUST00000065917.16|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000219961.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000217908.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1
mm39_v1_chr18_+_5591864_5591902	0.342653	GUAGUGU	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr15_-_82108531_82108563	0.3293	GUAGUGU	ENSMUST00000109535.3|Tnfrsf13c|ENSMUSG00000068105.12|tumor necrosis factor receptor superfamily, member 13c	ENSMUST00000089161.10|Tnfrsf13c|ENSMUSG00000068105.12|tumor necrosis factor receptor superfamily, member 13c
mm39_v1_chr7_-_63588610_63588704	0.312652	GUAGUGU	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr8_-_122379631_122379652	0.312175	GUAGUGU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr2_+_83554741_83554763	0.306999	GUAGUGU	ENSMUST00000028499.11|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr2_-_52632178_52632293	0.272665	GUAGUGU	ENSMUST00000102759.8|Stam2|ENSMUSG00000055371.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	ENSMUST00000127316.8|Stam2|ENSMUSG00000055371.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm39_v1_chr5_-_62923463_62923615	0.266629	GUAGUGU	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr2_+_48704121_48704187	0.243388	GUAGUGU	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr4_+_131649001_131649082	0.220213	GUAGUGU	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr10_+_20188207_20188238	0.217177	GUAGUGU	ENSMUST00000092678.10|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1	ENSMUST00000043881.12|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1
mm39_v1_chr7_-_16348862_16348946	0.203039	GUAGUGU	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr8_-_35432783_35432869	0.182328	GUAGUGU	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr11_+_75570085_75570167	0.17378	GUAGUGU	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chrX_-_7607527_7607580	0.169898	GUAGUGU	ENSMUST00000033490.13|Ccdc120|ENSMUSG00000031150.14|coiled-coil domain containing 120
mm39_v1_chr13_+_112600604_112600696	0.137735	GUAGUGU	ENSMUST00000183663.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000184311.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000183886.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer
mm39_v1_chr3_-_51184895_51184996	0.134454	GUAGUGU	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr8_+_26092252_26092335	0.101141	GUAGUGU	ENSMUST00000136107.9|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000146919.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000139966.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000142395.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000143445.2|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3
mm39_v1_chr9_-_77452152_77452196	0.101069	GUAGUGU	ENSMUST00000183873.8|Lrrc1|ENSMUSG00000032352.17|leucine rich repeat containing 1
mm39_v1_chr4_+_34550918_34550945	0.0917568	GUAGUGU	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
mm39_v1_chr11_+_80319424_80319484	0.0909268	GUAGUGU	ENSMUST00000173938.8|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	ENSMUST00000017572.14|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm39_v1_chr7_-_144024451_144024512	0.0834806	GUAGUGU	ENSMUST00000033407.13|Cttn|ENSMUSG00000031078.16|cortactin
mm39_v1_chr16_-_56537808_56537820	0.0582365	GUAGUGU	ENSMUST00000065515.14|Tfg|ENSMUSG00000022757.20|Trk-fused gene
mm39_v1_chr18_+_42408418_42408457	0.0287222	GUAGUGU	ENSMUST00000091920.6|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000046972.14|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000236240.2|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27
