mm39_v1_chr17_+_34457868_34457938	10.8352	Gli1	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chr11_+_72889889_72889929	6.07997	Gli1	ENSMUST00000021141.14|P2rx1|ENSMUSG00000020787.15|purinergic receptor P2X, ligand-gated ion channel, 1
mm39_v1_chr7_+_24069680_24069773	6.00226	Gli1	ENSMUST00000205428.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000171904.3|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000205626.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm39_v1_chr11_+_115790768_115790792	4.95725	Gli1	ENSMUST00000152171.8|Smim5|ENSMUSG00000048442.16|small integral membrane protein 5
mm39_v1_chr12_-_113561594_113561603	4.58204	Gli1	ENSMUST00000103444.3|Ighv5-4|ENSMUSG00000095612.3|immunoglobulin heavy variable 5-4
mm39_v1_chr6_+_113508636_113508682	4.46363	Gli1	ENSMUST00000036340.12|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2	ENSMUST00000204827.3|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2
mm39_v1_chr7_-_24459736_24459753	4.44437	Gli1	ENSMUST00000063956.7|Cd177|ENSMUSG00000052212.7|CD177 antigen
mm39_v1_chr12_-_113823290_113823320	4.30661	Gli1	ENSMUST00000103459.5|Ighv5-17|ENSMUSG00000095571.3|immunoglobulin heavy variable 5-17
mm39_v1_chr4_-_133601990_133602042	4.26433	Gli1	ENSMUST00000168974.9|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr3_+_90511068_90511084	4.24761	Gli1	ENSMUST00000001046.7|S100a4|ENSMUSG00000001020.9|S100 calcium binding protein A4
mm39_v1_chrX_+_158086253_158086277	4.08539	Gli1	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chrX_-_166165743_166165757	4.04756	Gli1	ENSMUST00000026839.5|Prps2|ENSMUSG00000025742.6|phosphoribosyl pyrophosphate synthetase 2
mm39_v1_chr9_+_106083988_106084003	4.01486	Gli1	ENSMUST00000188650.2|Twf2|ENSMUSG00000023277.14|twinfilin actin binding protein 2
mm39_v1_chr2_+_117942357_117942380	3.97666	Gli1	ENSMUST00000039559.9|Thbs1|ENSMUSG00000040152.9|thrombospondin 1
mm39_v1_chr6_-_148846247_148846324	3.85228	Gli1	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr11_+_115353290_115353332	3.78232	Gli1	ENSMUST00000106532.4|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000092445.12|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000153466.2|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm39_v1_chr3_+_92195873_92195873	3.70478	Gli1	ENSMUST00000090872.7|Sprr2a3|ENSMUSG00000074445.5|small proline-rich protein 2A3
mm39_v1_chr12_-_114117264_114117344	3.66107	Gli1	ENSMUST00000103461.5|Ighv7-3|ENSMUSG00000076652.5|immunoglobulin heavy variable 7-3
mm39_v1_chr17_+_37356854_37356869	3.62645	Gli1	ENSMUST00000025338.16|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr12_-_113294138_113294149	3.51188	Gli1	ENSMUST00000194304.6|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)	ENSMUST00000103420.3|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)
mm39_v1_chr9_-_106762818_106762818	3.27259	Gli1	ENSMUST00000185707.2|Rbm15b|ENSMUSG00000074102.5|RNA binding motif protein 15B
mm39_v1_chr12_-_113625906_113625929	3.2651	Gli1	ENSMUST00000103448.3|Ighv5-9|ENSMUSG00000095285.3|immunoglobulin heavy variable 5-9
mm39_v1_chr6_+_48603698_48603698	3.22271	Gli1	ENSMUST00000095938.10|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703
mm39_v1_chr1_-_64160557_64160650	3.05476	Gli1	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr14_-_54646917_54646934	3.03878	Gli1	ENSMUST00000000984.9|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr5_-_115439016_115439058	3.0343	Gli1	ENSMUST00000009157.4|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr18_-_70274639_70274693	3.01848	Gli1	ENSMUST00000121693.8|Rab27b|ENSMUSG00000024511.16|RAB27B, member RAS oncogene family
mm39_v1_chr11_+_76900091_76900106	2.99679	Gli1	ENSMUST00000129572.3|Slc6a4|ENSMUSG00000020838.13|solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
mm39_v1_chr11_-_102255999_102256106	2.89279	Gli1	ENSMUST00000006749.10|Slc4a1|ENSMUSG00000006574.16|solute carrier family 4 (anion exchanger), member 1
mm39_v1_chr7_+_79836581_79836651	2.88349	Gli1	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr11_-_34724458_34724490	2.87887	Gli1	ENSMUST00000093191.3|Spdl1|ENSMUSG00000069910.3|spindle apparatus coiled-coil protein 1
mm39_v1_chr7_-_19504446_19504472	2.87684	Gli1	ENSMUST00000003061.14|Bcam|ENSMUSG00000002980.15|basal cell adhesion molecule
mm39_v1_chr10_+_79722081_79722153	2.87507	Gli1	ENSMUST00000046091.7|Elane|ENSMUSG00000020125.8|elastase, neutrophil expressed
mm39_v1_chr5_-_115438971_115439003	2.84501	Gli1	ENSMUST00000112090.2|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr5_-_110987604_110987653	2.84034	Gli1	ENSMUST00000056937.12|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr3_+_95836558_95836611	2.81593	Gli1	ENSMUST00000165307.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000015893.13|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000169426.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr7_+_28682253_28682318	2.80884	Gli1	ENSMUST00000085835.8|Map4k1|ENSMUSG00000037337.12|mitogen-activated protein kinase kinase kinase kinase 1
mm39_v1_chr15_-_100567377_100567411	2.74743	Gli1	ENSMUST00000182814.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000238935.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182068.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182574.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182775.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2
mm39_v1_chr3_+_95836637_95836698	2.67119	Gli1	ENSMUST00000171368.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000168106.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr6_-_41613322_41613343	2.66981	Gli1	ENSMUST00000031902.7|Trpv6|ENSMUSG00000029868.15|transient receptor potential cation channel, subfamily V, member 6
mm39_v1_chr1_-_106641940_106642062	2.6438	Gli1	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr4_+_62398262_62398337	2.6431	Gli1	ENSMUST00000030088.12|Bspry|ENSMUSG00000028392.16|B-box and SPRY domain containing	ENSMUST00000107449.4|Bspry|ENSMUSG00000028392.16|B-box and SPRY domain containing
mm39_v1_chr4_+_12089373_12089441	2.61247	Gli1	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr11_-_83353787_83353897	2.58461	Gli1	ENSMUST00000021020.13|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000119346.2|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000103209.10|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000108137.9|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)
mm39_v1_chr13_+_44882998_44883026	2.57572	Gli1	ENSMUST00000174068.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr2_-_91762033_91762069	2.51353	Gli1	ENSMUST00000111309.8|Mdk|ENSMUSG00000027239.15|midkine	ENSMUST00000090602.6|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr17_+_37356872_37356972	2.39273	Gli1	ENSMUST00000174456.8|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr12_+_17778198_17778227	2.35553	Gli1	ENSMUST00000222944.2|Hpcal1|ENSMUSG00000071379.3|hippocalcin-like 1
mm39_v1_chr9_+_106247943_106248054	2.34018	Gli1	ENSMUST00000173748.2|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr19_-_21418215_21418238	2.33272	Gli1	ENSMUST00000237823.2|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chr7_+_127845984_127846120	2.32439	Gli1	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr14_-_54647647_54647675	2.29642	Gli1	ENSMUST00000228488.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	ENSMUST00000195970.5|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr19_+_11382092_11382139	2.2953	Gli1	ENSMUST00000153546.8|Ms4a4c|ENSMUSG00000024675.20|membrane-spanning 4-domains, subfamily A, member 4C
mm39_v1_chr5_-_110987441_110987600	2.26224	Gli1	ENSMUST00000145318.2|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr2_-_59778560_59778594	2.17765	Gli1	ENSMUST00000153136.2|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr2_-_91762119_91762141	2.14169	Gli1	ENSMUST00000069423.13|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr17_+_34406762_34406843	2.12535	Gli1	ENSMUST00000041633.15|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr11_+_3239868_3239993	2.11347	Gli1	ENSMUST00000094471.10|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1	ENSMUST00000110043.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr18_-_35795233_35795255	2.08524	Gli1	ENSMUST00000025209.12|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000096573.4|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr9_-_54569128_54569154	2.08304	Gli1	ENSMUST00000034822.12|Acsbg1|ENSMUSG00000032281.12|acyl-CoA synthetase bubblegum family member 1
mm39_v1_chr17_+_34406523_34406544	2.08127	Gli1	ENSMUST00000170086.8|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr2_+_84867554_84867649	2.06255	Gli1	ENSMUST00000077798.13|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr2_+_76200299_76200386	2.01991	Gli1	ENSMUST00000046389.5|Rbm45|ENSMUSG00000042369.9|RNA binding motif protein 45
mm39_v1_chr11_-_41891111_41891183	1.97628	Gli1	ENSMUST00000109290.2|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr2_+_152950388_152950462	1.94721	Gli1	ENSMUST00000189688.2|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase	ENSMUST00000109799.8|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase	ENSMUST00000003370.14|Hck|ENSMUSG00000003283.16|hemopoietic cell kinase
mm39_v1_chr5_-_123859153_123859175	1.94721	Gli1	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr13_+_54722823_54722828	1.92719	Gli1	ENSMUST00000026988.11|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr11_+_80191692_80191738	1.92384	Gli1	ENSMUST00000017836.8|Rhbdl3|ENSMUSG00000017692.9|rhomboid like 3
mm39_v1_chr7_+_127846121_127846165	1.88974	Gli1	ENSMUST00000167965.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr13_-_63579497_63579547	1.87608	Gli1	ENSMUST00000160931.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000099444.10|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000220684.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000161977.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000163091.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr17_+_34824827_34824862	1.85582	Gli1	ENSMUST00000037489.15|Agpat1|ENSMUSG00000034254.18|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm39_v1_chr2_+_157401998_157402050	1.84664	Gli1	ENSMUST00000153739.9|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173595.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000109526.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173839.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173041.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173793.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000172487.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000088484.6|Nnat|ENSMUSG00000067786.17|neuronatin
mm39_v1_chr13_+_54722833_54722906	1.83427	Gli1	ENSMUST00000156024.2|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr3_+_88049633_88049790	1.83305	Gli1	ENSMUST00000001455.13|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000119251.8|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr9_+_32607301_32607417	1.79082	Gli1	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chrX_+_154045439_154045454	1.73865	Gli1	ENSMUST00000026324.10|Acot9|ENSMUSG00000025287.16|acyl-CoA thioesterase 9
mm39_v1_chr12_-_70158348_70158403	1.7347	Gli1	ENSMUST00000220689.2|Nin|ENSMUSG00000021068.18|ninein
mm39_v1_chr12_+_77285770_77285849	1.72653	Gli1	ENSMUST00000062804.8|Fut8|ENSMUSG00000021065.17|fucosyltransferase 8
mm39_v1_chr5_-_123859070_123859125	1.64017	Gli1	ENSMUST00000031376.12|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr4_-_43454561_43454590	1.63847	Gli1	ENSMUST00000107926.8|Cd72|ENSMUSG00000028459.12|CD72 antigen	ENSMUST00000107925.8|Cd72|ENSMUSG00000028459.12|CD72 antigen
mm39_v1_chr16_-_90807983_90808001	1.61153	Gli1	ENSMUST00000170853.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000130813.3|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000118390.10|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chr11_-_45846291_45846321	1.59949	Gli1	ENSMUST00000011398.13|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr5_+_117457126_117457185	1.59802	Gli1	ENSMUST00000111967.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr3_+_88049875_88049892	1.59387	Gli1	ENSMUST00000107558.9|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000107559.3|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr16_-_4376471_4376647	1.58166	Gli1	ENSMUST00000230875.2|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr9_+_113570506_113570551	1.57337	Gli1	ENSMUST00000213663.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr7_+_101034604_101034759	1.55305	Gli1	ENSMUST00000130016.8|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	ENSMUST00000134143.2|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr19_-_6593049_6593068	1.55085	Gli1	ENSMUST00000113451.9|Slc22a12|ENSMUSG00000061742.13|solute carrier family 22 (organic anion/cation transporter), member 12
mm39_v1_chr10_-_43934774_43934879	1.54716	Gli1	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr16_-_19703014_19703035	1.53635	Gli1	ENSMUST00000100083.5|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene	ENSMUST00000231564.2|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene
mm39_v1_chr17_+_17669082_17669150	1.50903	Gli1	ENSMUST00000140134.2|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr6_+_48604157_48604215	1.48289	Gli1	ENSMUST00000203088.3|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703	ENSMUST00000204958.2|AI854703|ENSMUSG00000053297.15|expressed sequence AI854703
mm39_v1_chr2_+_29779750_29779929	1.47353	Gli1	ENSMUST00000113763.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113757.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113756.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000133233.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113759.9|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113755.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000137558.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000046571.14|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr10_+_79613083_79613116	1.462	Gli1	ENSMUST00000020575.5|Fstl3|ENSMUSG00000020325.11|follistatin-like 3
mm39_v1_chr12_+_44375747_44375845	1.42013	Gli1	ENSMUST00000020939.16|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule	ENSMUST00000220126.2|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chr9_+_117888124_117888169	1.41452	Gli1	ENSMUST00000123690.2|Azi2|ENSMUSG00000039285.13|5-azacytidine induced gene 2
mm39_v1_chr1_-_133728779_133728805	1.39022	Gli1	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr2_+_84867783_84867874	1.375	Gli1	ENSMUST00000168266.8|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1	ENSMUST00000130729.3|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr10_+_69370038_69370052	1.37231	Gli1	ENSMUST00000182439.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092434.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000047061.13|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092432.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092431.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000054167.15|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr7_+_99825886_99825899	1.31763	Gli1	ENSMUST00000178946.9|Kcne3|ENSMUSG00000035165.15|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm39_v1_chrX_-_58613428_58613454	1.30737	Gli1	ENSMUST00000119833.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13	ENSMUST00000131319.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr5_-_134485081_134485118	1.30671	Gli1	ENSMUST00000111244.5|Gtf2ird1|ENSMUSG00000023079.15|general transcription factor II I repeat domain-containing 1
mm39_v1_chr2_+_70392351_70392386	1.26463	Gli1	ENSMUST00000094934.11|Gad1|ENSMUSG00000070880.11|glutamate decarboxylase 1
mm39_v1_chr11_-_78136767_78136813	1.2524	Gli1	ENSMUST00000002121.5|Supt6|ENSMUSG00000002052.7|SPT6, histone chaperone and transcription elongation factor
mm39_v1_chr15_-_51855073_51855159	1.24657	Gli1	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr7_-_79989900_79989958	1.22074	Gli1	ENSMUST00000133728.8|Unc45a|ENSMUSG00000030533.17|unc-45 myosin chaperone A
mm39_v1_chr7_+_140796559_140796613	1.19208	Gli1	ENSMUST00000148975.3|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chrX_+_100342749_100342808	1.17688	Gli1	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr4_-_45320579_45320634	1.15547	Gli1	ENSMUST00000030003.10|Exosc3|ENSMUSG00000028322.12|exosome component 3
mm39_v1_chr5_+_117457356_117457393	1.14076	Gli1	ENSMUST00000086464.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr2_+_32425327_32425371	1.13984	Gli1	ENSMUST00000133512.2|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A	ENSMUST00000048375.6|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A
mm39_v1_chr6_+_28423539_28423629	1.13242	Gli1	ENSMUST00000020717.12|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5	ENSMUST00000169841.2|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5
mm39_v1_chr10_+_22520910_22521008	1.12814	Gli1	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr11_-_76289888_76290010	1.12733	Gli1	ENSMUST00000021204.4|Nxn|ENSMUSG00000020844.7|nucleoredoxin
mm39_v1_chr10_+_69369632_69369677	1.11025	Gli1	ENSMUST00000182155.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183169.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183148.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr13_+_109822527_109822690	1.10985	Gli1	ENSMUST00000074103.12|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr11_-_45845992_45846020	1.10407	Gli1	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr4_+_12140263_12140317	1.10173	Gli1	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chr6_-_122587005_122587046	1.08838	Gli1	ENSMUST00000032211.5|Gdf3|ENSMUSG00000030117.6|growth differentiation factor 3
mm39_v1_chr10_+_69369590_69369603	1.08114	Gli1	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr7_+_127865472_127865506	1.06808	Gli1	ENSMUST00000033045.11|Slc5a2|ENSMUSG00000030781.14|solute carrier family 5 (sodium/glucose cotransporter), member 2
mm39_v1_chr10_-_34003933_34003983	1.0613	Gli1	ENSMUST00000062784.8|Calhm6|ENSMUSG00000046031.8|calcium homeostasis modulator family member 6
mm39_v1_chr2_+_181162278_181162324	1.06007	Gli1	ENSMUST00000072334.12|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr8_+_55407872_55407889	1.04591	Gli1	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr7_+_127084283_127084393	1.03344	Gli1	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr4_-_43454600_43454635	1.026	Gli1	ENSMUST00000098105.4|Cd72|ENSMUSG00000028459.12|CD72 antigen	ENSMUST00000098104.10|Cd72|ENSMUSG00000028459.12|CD72 antigen	ENSMUST00000030179.11|Cd72|ENSMUSG00000028459.12|CD72 antigen
mm39_v1_chrX_-_165293419_165293474	1.01358	Gli1	ENSMUST00000112188.8|Tceanc|ENSMUSG00000051224.14|transcription elongation factor A (SII) N-terminal and central domain containing
mm39_v1_chr7_+_140796537_140796557	1.00348	Gli1	ENSMUST00000141804.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr4_-_58553311_58553357	0.999591	Gli1	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr19_-_46321218_46321231	0.986771	Gli1	ENSMUST00000238062.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr6_-_52222776_52222806	0.984069	Gli1	ENSMUST00000048026.10|Hoxa11|ENSMUSG00000038210.11|homeobox A11
mm39_v1_chr9_-_96774719_96774740	0.975591	Gli1	ENSMUST00000154146.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1
mm39_v1_chr1_+_152830720_152830804	0.971779	Gli1	ENSMUST00000043313.15|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2	ENSMUST00000186621.2|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2
mm39_v1_chr7_-_6334239_6334290	0.966529	Gli1	ENSMUST00000127658.2|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583	ENSMUST00000062765.14|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583
mm39_v1_chr9_+_113570580_113570592	0.96393	Gli1	ENSMUST00000216817.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr12_+_44375665_44375740	0.963857	Gli1	ENSMUST00000110748.4|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chr2_-_152672535_152672600	0.959838	Gli1	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr3_-_115800989_115801060	0.930636	Gli1	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr6_+_107506678_107506741	0.919995	Gli1	ENSMUST00000049285.10|Lrrn1|ENSMUSG00000034648.10|leucine rich repeat protein 1, neuronal
mm39_v1_chr9_+_118335294_118335357	0.910155	Gli1	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr7_-_118042772_118042792	0.906917	Gli1	ENSMUST00000081574.8|Syt17|ENSMUSG00000058420.9|synaptotagmin XVII
mm39_v1_chr5_-_110927803_110927833	0.901987	Gli1	ENSMUST00000112426.8|Pus1|ENSMUSG00000029507.17|pseudouridine synthase 1
mm39_v1_chr2_+_181162326_181162364	0.898929	Gli1	ENSMUST00000108797.8|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr4_-_117539431_117539477	0.885925	Gli1	ENSMUST00000102687.4|Dmap1|ENSMUSG00000009640.12|DNA methyltransferase 1-associated protein 1
mm39_v1_chr9_+_100956145_100956165	0.88152	Gli1	ENSMUST00000189616.2|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr18_-_43506277_43506339	0.87156	Gli1	ENSMUST00000118043.8|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr11_-_41891359_41891421	0.867125	Gli1	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr6_-_67014348_67014376	0.861214	Gli1	ENSMUST00000204369.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr1_-_155108455_155108486	0.851727	Gli1	ENSMUST00000035914.5|BC034090|ENSMUSG00000033722.10|cDNA sequence BC034090
mm39_v1_chr6_-_52195663_52195696	0.851302	Gli1	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr11_-_58692770_58692793	0.834143	Gli1	ENSMUST00000094156.12|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000239007.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000238886.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000060581.5|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B
mm39_v1_chr2_+_20742115_20742152	0.828269	Gli1	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr9_-_107482494_107482601	0.821612	Gli1	ENSMUST00000102529.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr4_+_11156411_11156453	0.773568	Gli1	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr4_-_82939330_82939372	0.768016	Gli1	ENSMUST00000071708.12|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chr4_-_58553553_58553898	0.76418	Gli1	ENSMUST00000107575.9|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000107574.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000147354.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr11_+_4085164_4085222	0.751176	Gli1	ENSMUST00000003677.11|Rnf215|ENSMUSG00000003581.15|ring finger protein 215	ENSMUST00000145705.8|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr11_-_100244866_100244967	0.738024	Gli1	ENSMUST00000173630.8|Hap1|ENSMUSG00000006930.16|huntingtin-associated protein 1
mm39_v1_chr18_-_35795175_35795228	0.734818	Gli1	ENSMUST00000236574.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000236971.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr16_+_92295009_92295063	0.732398	Gli1	ENSMUST00000023670.4|Clic6|ENSMUSG00000022949.10|chloride intracellular channel 6
mm39_v1_chr7_+_5023552_5023601	0.730528	Gli1	ENSMUST00000208728.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106	ENSMUST00000085427.6|Zfp865|ENSMUSG00000074405.9|zinc finger protein 865
mm39_v1_chr14_+_105496008_105496064	0.730363	Gli1	ENSMUST00000181969.8|Ndfip2|ENSMUSG00000053253.17|Nedd4 family interacting protein 2
mm39_v1_chr10_+_74896383_74896461	0.707454	Gli1	ENSMUST00000164107.3|Bcr|ENSMUSG00000009681.11|BCR activator of RhoGEF and GTPase
mm39_v1_chr11_+_101066867_101066867	0.69887	Gli1	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr6_+_108190050_108190065	0.696871	Gli1	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr3_-_94566107_94566185	0.674874	Gli1	ENSMUST00000196655.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000200407.2|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000006123.11|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000196733.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1
mm39_v1_chr11_+_78136569_78136646	0.667366	Gli1	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr13_+_6598185_6598226	0.665388	Gli1	ENSMUST00000021611.10|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1	ENSMUST00000222485.2|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1
mm39_v1_chr6_-_67014191_67014235	0.660764	Gli1	ENSMUST00000204282.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr11_+_120612278_120612362	0.651944	Gli1	ENSMUST00000018156.12|Rac3|ENSMUSG00000018012.12|Rac family small GTPase 3
mm39_v1_chr2_+_29780122_29780168	0.651233	Gli1	ENSMUST00000113762.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113765.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr9_+_110134241_110134299	0.638336	Gli1	ENSMUST00000199592.5|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6	ENSMUST00000068071.12|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6
mm39_v1_chr11_+_120612369_120612399	0.634267	Gli1	ENSMUST00000142229.2|Rac3|ENSMUSG00000018012.12|Rac family small GTPase 3
mm39_v1_chr2_+_26220403_26220453	0.623345	Gli1	ENSMUST00000114134.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000127453.2|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chrX_-_139857424_139857477	0.609114	Gli1	ENSMUST00000033805.15|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	ENSMUST00000112978.2|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm39_v1_chr8_+_121854566_121854679	0.587777	Gli1	ENSMUST00000181609.2|Foxl1|ENSMUSG00000097084.2|forkhead box L1
mm39_v1_chr4_+_74170165_74170248	0.586739	Gli1	ENSMUST00000030102.12|Kdm4c|ENSMUSG00000028397.14|lysine (K)-specific demethylase 4C
mm39_v1_chr17_-_90217868_90217877	0.586267	Gli1	ENSMUST00000086423.6|Gm10184|ENSMUSG00000066878.6|predicted pseudogene 10184
mm39_v1_chr7_+_27198740_27198756	0.584676	Gli1	ENSMUST00000098644.9|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000108355.2|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000238936.2|Prx|ENSMUSG00000053198.15|periaxin
mm39_v1_chr10_-_98962187_98962187	0.583993	Gli1	ENSMUST00000060761.7|Phxr2|ENSMUSG00000055108.7|per-hexamer repeat gene 2
mm39_v1_chrX_-_146337046_146337082	0.573444	Gli1	ENSMUST00000112819.9|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2	ENSMUST00000136789.8|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2
mm39_v1_chr13_-_63579551_63579570	0.568214	Gli1	ENSMUST00000073029.13|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr8_+_85763534_85763566	0.558568	Gli1	ENSMUST00000093360.12|Tnpo2|ENSMUSG00000031691.15|transportin 2 (importin 3, karyopherin beta 2b)
mm39_v1_chrX_+_135950334_135950415	0.55579	Gli1	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr5_-_32903687_32903755	0.546042	Gli1	ENSMUST00000135248.2|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr9_-_107482462_107482482	0.540753	Gli1	ENSMUST00000194433.6|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr13_+_81931642_81931677	0.533517	Gli1	ENSMUST00000224574.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr7_-_102143980_102143980	0.518572	Gli1	ENSMUST00000058750.4|Olfr545|ENSMUSG00000044824.10|olfactory receptor 545
mm39_v1_chr7_-_66915756_66915910	0.50977	Gli1	ENSMUST00000207715.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr13_+_81931196_81931412	0.503409	Gli1	ENSMUST00000022009.10|Cetn3|ENSMUSG00000021537.10|centrin 3	ENSMUST00000223793.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr7_+_25016492_25016589	0.49774	Gli1	ENSMUST00000128119.2|Megf8|ENSMUSG00000045039.10|multiple EGF-like-domains 8
mm39_v1_chr5_-_32903615_32903657	0.470213	Gli1	ENSMUST00000120591.8|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr3_-_92393193_92393208	0.455815	Gli1	ENSMUST00000054599.8|Sprr1a|ENSMUSG00000050359.8|small proline-rich protein 1A
mm39_v1_chr6_+_108190163_108190231	0.416115	Gli1	ENSMUST00000203615.3|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chrX_+_100342813_100342824	0.414952	Gli1	ENSMUST00000065858.3|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr14_+_105496147_105496196	0.394835	Gli1	ENSMUST00000138283.2|Ndfip2|ENSMUSG00000053253.17|Nedd4 family interacting protein 2
mm39_v1_chr10_+_69369854_69369901	0.392868	Gli1	ENSMUST00000182557.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr10_-_63926044_63926076	0.391689	Gli1	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr15_-_85466009_85466022	0.389847	Gli1	ENSMUST00000023015.15|Wnt7b|ENSMUSG00000022382.16|wingless-type MMTV integration site family, member 7B
mm39_v1_chr4_-_147932817_147932887	0.382574	Gli1	ENSMUST00000105718.8|Zfp933|ENSMUSG00000059423.14|zinc finger protein 933	ENSMUST00000135798.2|Zfp933|ENSMUSG00000059423.14|zinc finger protein 933
mm39_v1_chr1_+_133278248_133278248	0.372096	Gli1	ENSMUST00000094556.3|Ren1|ENSMUSG00000070645.6|renin 1 structural
mm39_v1_chr5_+_91222470_91222487	0.366112	Gli1	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr19_+_55304703_55304799	0.354687	Gli1	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr11_+_62737936_62737960	0.346734	Gli1	ENSMUST00000150989.8|Fbxw10|ENSMUSG00000090173.9|F-box and WD-40 domain protein 10	ENSMUST00000176577.2|Fbxw10|ENSMUSG00000090173.9|F-box and WD-40 domain protein 10
mm39_v1_chr2_+_118865262_118865350	0.342799	Gli1	ENSMUST00000028796.2|Rpusd2|ENSMUSG00000027324.2|RNA pseudouridylate synthase domain containing 2
mm39_v1_chr10_-_128727542_128727587	0.342331	Gli1	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr4_+_118285275_118285392	0.332496	Gli1	ENSMUST00000006557.13|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000167636.8|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000102673.11|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm39_v1_chr5_+_5623799_5623799	0.323297	Gli1	ENSMUST00000101627.5|Gm8773|ENSMUSG00000073234.5|predicted gene 8773
mm39_v1_chr13_-_53531391_53531433	0.312433	Gli1	ENSMUST00000021920.8|Sptlc1|ENSMUSG00000021468.9|serine palmitoyltransferase, long chain base subunit 1
mm39_v1_chr12_-_103304573_103304668	0.302834	Gli1	ENSMUST00000149431.2|Asb2|ENSMUSG00000021200.15|ankyrin repeat and SOCS box-containing 2
mm39_v1_chr6_-_51989456_51989531	0.298453	Gli1	ENSMUST00000078214.8|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2	ENSMUST00000204778.3|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2
mm39_v1_chr11_+_23256909_23256937	0.282598	Gli1	ENSMUST00000137823.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chr8_+_46111361_46111391	0.27987	Gli1	ENSMUST00000210946.2|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr5_-_123127346_123127401	0.264362	Gli1	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr4_-_154983533_154983592	0.263786	Gli1	ENSMUST00000030935.10|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B	ENSMUST00000132281.2|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B
mm39_v1_chr7_-_3918484_3918502	0.263108	Gli1	ENSMUST00000038176.15|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	ENSMUST00000206077.2|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	ENSMUST00000090689.5|Lilra6|ENSMUSG00000030427.18|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6
mm39_v1_chr7_+_73040908_73041044	0.254385	Gli1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr5_+_3391477_3391488	0.247792	Gli1	ENSMUST00000199156.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr2_+_181138958_181139009	0.244583	Gli1	ENSMUST00000149163.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000000844.15|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000184849.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000108800.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000069712.9|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr4_-_41275091_41275144	0.242211	Gli1	ENSMUST00000030143.13|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2	ENSMUST00000108068.8|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2
mm39_v1_chr11_+_9141934_9141948	0.218231	Gli1	ENSMUST00000042740.13|Abca13|ENSMUSG00000004668.15|ATP-binding cassette, sub-family A (ABC1), member 13
mm39_v1_chr2_+_154855451_154855481	0.212864	Gli1	ENSMUST00000029123.3|a|ENSMUSG00000027596.11|nonagouti
mm39_v1_chr11_+_103540391_103540400	0.211374	Gli1	ENSMUST00000057870.4|Rprml|ENSMUSG00000046215.4|reprimo-like
mm39_v1_chr2_+_164721277_164721318	0.209898	Gli1	ENSMUST00000041643.5|Pcif1|ENSMUSG00000039849.7|phosphorylated CTD interacting factor 1
mm39_v1_chr16_+_18595589_18595606	0.205058	Gli1	ENSMUST00000043577.3|Cldn5|ENSMUSG00000041378.3|claudin 5
mm39_v1_chr2_+_181139016_181139037	0.20203	Gli1	ENSMUST00000108799.10|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr4_-_58553171_58553184	0.193837	Gli1	ENSMUST00000145361.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr19_-_5135510_5135559	0.185448	Gli1	ENSMUST00000140389.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000151413.2|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000077066.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A
mm39_v1_chr11_-_99313078_99313086	0.170028	Gli1	ENSMUST00000017741.4|Krt12|ENSMUSG00000020912.5|keratin 12
mm39_v1_chr17_-_57338468_57338538	0.156971	Gli1	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr3_-_92441809_92441826	0.154874	Gli1	ENSMUST00000193521.2|2310046K23Rik|ENSMUSG00000102308.2|RIKEN cDNA 2310046K23 gene
mm39_v1_chr4_-_155947819_155947819	0.143979	Gli1	ENSMUST00000030949.4|Tas1r3|ENSMUSG00000029072.4|taste receptor, type 1, member 3
mm39_v1_chr7_-_106390206_106390206	0.137421	Gli1	ENSMUST00000065024.2|Olfr699|ENSMUSG00000096714.3|olfactory receptor 699
mm39_v1_chr8_-_33374825_33374944	0.127633	Gli1	ENSMUST00000238791.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr8_+_46111310_46111335	0.120271	Gli1	ENSMUST00000153798.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr9_-_54568950_54569001	0.111292	Gli1	ENSMUST00000128624.2|Acsbg1|ENSMUSG00000032281.12|acyl-CoA synthetase bubblegum family member 1
mm39_v1_chr15_-_95426419_95426523	0.0993741	Gli1	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr16_+_10229786_10229827	0.0927936	Gli1	ENSMUST00000023146.5|Nubp1|ENSMUSG00000022503.11|nucleotide binding protein 1
mm39_v1_chr14_+_52804637_52804750	0.0879507	Gli1	ENSMUST00000196939.2|Trav2|ENSMUSG00000076759.4|T cell receptor alpha variable 2	ENSMUST00000103568.3|Trav2|ENSMUSG00000076759.4|T cell receptor alpha variable 2
mm39_v1_chr7_-_137999434_137999516	0.0852773	Gli1	ENSMUST00000160436.2|Tcerg1l|ENSMUSG00000091002.3|transcription elongation regulator 1-like
mm39_v1_chr7_-_19043525_19043627	0.0654082	Gli1	ENSMUST00000208446.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B
mm39_v1_chr2_+_106523532_106523624	0.0549683	Gli1	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr2_+_29780532_29780557	0.0417399	Gli1	ENSMUST00000113764.4|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr2_-_151815759_151815886	0.0340831	Gli1	ENSMUST00000109865.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A	ENSMUST00000109864.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr8_+_46111703_46111764	0.0278549	Gli1	ENSMUST00000134675.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000139869.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000126067.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chrX_+_139857688_139857703	0.0211072	Gli1	ENSMUST00000239541.1|Atg4a|ENSMUSG00000079418.6|autophagy related 4A, cysteine peptidase
mm39_v1_chr7_+_24310171_24310201	0.0182506	Gli1	ENSMUST00000206422.2|Phldb3|ENSMUSG00000074277.5|pleckstrin homology like domain, family B, member 3
mm39_v1_chr14_+_54429757_54429772	0.0174463	Gli1	ENSMUST00000103714.2|Traj27|ENSMUSG00000076902.2|T cell receptor alpha joining 27
mm39_v1_chr15_-_103218876_103219039	0.0160235	Gli1	ENSMUST00000079824.6|Gpr84|ENSMUSG00000063234.6|G protein-coupled receptor 84
mm39_v1_chr7_-_142453722_142453751	0.00983607	Gli1	ENSMUST00000000219.10|Th|ENSMUSG00000000214.12|tyrosine hydroxylase
mm39_v1_chr15_-_95426108_95426160	0.000563808	Gli1	ENSMUST00000075275.3|Nell2|ENSMUSG00000022454.18|NEL-like 2
