mm39_v1_chr2_+_158217558_158217641	22.0567	Hoxa1	ENSMUST00000109488.8|Snhg11|ENSMUSG00000044349.17|small nucleolar RNA host gene 11
mm39_v1_chr15_-_95426419_95426523	14.247	Hoxa1	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr4_-_143026068_143026134	11.8976	Hoxa1	ENSMUST00000030317.14|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr15_+_82136598_82136676	11.4375	Hoxa1	ENSMUST00000136948.3|1500009C09Rik|ENSMUSG00000068099.6|RIKEN cDNA 1500009C09 gene
mm39_v1_chr13_-_12355604_12355641	10.1818	Hoxa1	ENSMUST00000168193.8|Actn2|ENSMUSG00000052374.17|actinin alpha 2	ENSMUST00000064204.14|Actn2|ENSMUSG00000052374.17|actinin alpha 2
mm39_v1_chr10_+_81464370_81464469	9.30522	Hoxa1	ENSMUST00000123896.8|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24	ENSMUST00000153573.2|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24	ENSMUST00000119336.8|Ankrd24|ENSMUSG00000054708.18|ankyrin repeat domain 24
mm39_v1_chr11_-_99134885_99134964	7.90954	Hoxa1	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr17_+_70829050_70829139	7.51292	Hoxa1	ENSMUST00000133717.9|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1	ENSMUST00000148486.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr3_-_88669551_88669691	7.38874	Hoxa1	ENSMUST00000183267.2|Syt11|ENSMUSG00000068923.15|synaptotagmin XI
mm39_v1_chr17_+_26036893_26037033	7.26952	Hoxa1	ENSMUST00000235694.2|Fbxl16|ENSMUSG00000025738.9|F-box and leucine-rich repeat protein 16
mm39_v1_chr14_+_66581818_66581829	6.7043	Hoxa1	ENSMUST00000118426.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000121955.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000120229.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000134440.2|Stmn4|ENSMUSG00000022044.15|stathmin-like 4
mm39_v1_chr10_-_33500583_33500765	6.51521	Hoxa1	ENSMUST00000161692.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000160299.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000019920.13|Clvs2|ENSMUSG00000019785.15|clavesin 2
mm39_v1_chr17_+_70829144_70829164	6.38035	Hoxa1	ENSMUST00000140728.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr7_+_73040908_73041044	6.31037	Hoxa1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr14_+_70314727_70314817	6.30533	Hoxa1	ENSMUST00000225200.2|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr5_+_27466914_27467004	6.29516	Hoxa1	ENSMUST00000101471.4|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr10_+_81068980_81069025	6.29515	Hoxa1	ENSMUST00000144087.2|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2	ENSMUST00000117798.8|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2
mm39_v1_chr14_+_66581745_66581765	6.28391	Hoxa1	ENSMUST00000152093.8|Stmn4|ENSMUSG00000022044.15|stathmin-like 4	ENSMUST00000074523.13|Stmn4|ENSMUSG00000022044.15|stathmin-like 4
mm39_v1_chr17_-_90763300_90763454	6.18892	Hoxa1	ENSMUST00000159778.8|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000174337.8|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000172466.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr14_+_70314652_70314671	5.55772	Hoxa1	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr2_-_130885008_130885008	5.54066	Hoxa1	ENSMUST00000110240.10|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4	ENSMUST00000066958.11|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4	ENSMUST00000110235.2|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4
mm39_v1_chr9_+_15150341_15150461	5.37069	Hoxa1	ENSMUST00000034413.8|Vstm5|ENSMUSG00000031937.8|V-set and transmembrane domain containing 5
mm39_v1_chr15_+_74388044_74388106	5.28722	Hoxa1	ENSMUST00000042035.16|Adgrb1|ENSMUSG00000034730.18|adhesion G protein-coupled receptor B1
mm39_v1_chr5_+_137059127_137059218	5.23527	Hoxa1	ENSMUST00000041543.9|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible	ENSMUST00000186451.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr2_+_165436929_165437000	5.1128	Hoxa1	ENSMUST00000088132.13|Eya2|ENSMUSG00000017897.19|EYA transcriptional coactivator and phosphatase 2
mm39_v1_chr14_-_104081827_104081839	5.10214	Hoxa1	ENSMUST00000022718.11|Ednrb|ENSMUSG00000022122.16|endothelin receptor type B
mm39_v1_chr8_+_12999480_12999510	5.05366	Hoxa1	ENSMUST00000110866.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like
mm39_v1_chr8_+_12999394_12999428	4.8584	Hoxa1	ENSMUST00000110867.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like
mm39_v1_chr5_+_24679154_24679212	4.78685	Hoxa1	ENSMUST00000199856.2|Agap3|ENSMUSG00000023353.15|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm39_v1_chr2_-_130884602_130884602	4.72319	Hoxa1	ENSMUST00000028787.12|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4	ENSMUST00000110239.8|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4	ENSMUST00000110234.8|Gfra4|ENSMUSG00000027316.16|glial cell line derived neurotrophic factor family receptor alpha 4
mm39_v1_chr2_+_65676111_65676142	4.71481	Hoxa1	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr9_-_4796217_4796267	4.71438	Hoxa1	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr4_+_101365144_101365229	4.56448	Hoxa1	ENSMUST00000149047.8|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6	ENSMUST00000106929.10|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr19_+_45036037_45036113	4.53813	Hoxa1	ENSMUST00000062213.13|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr19_+_45036220_45036278	4.44985	Hoxa1	ENSMUST00000084493.8|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr2_+_90716204_90716216	4.44483	Hoxa1	ENSMUST00000111466.3|C1qtnf4|ENSMUSG00000040794.6|C1q and tumor necrosis factor related protein 4
mm39_v1_chr2_+_156317416_156317483	4.44096	Hoxa1	ENSMUST00000029155.16|Epb41l1|ENSMUSG00000027624.21|erythrocyte membrane protein band 4.1 like 1
mm39_v1_chr19_+_45035942_45036015	4.26199	Hoxa1	ENSMUST00000237222.2|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3	ENSMUST00000111954.11|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr3_+_68479578_68479723	4.18244	Hoxa1	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr4_-_106656976_106657043	4.00165	Hoxa1	ENSMUST00000145061.8|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11	ENSMUST00000102762.10|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11
mm39_v1_chr5_+_88731366_88731382	3.94001	Hoxa1	ENSMUST00000199312.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr4_+_101365052_101365068	3.93468	Hoxa1	ENSMUST00000038207.12|Dnajc6|ENSMUSG00000028528.18|DnaJ heat shock protein family (Hsp40) member C6
mm39_v1_chr5_+_88731386_88731449	3.84761	Hoxa1	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr1_+_11063678_11063702	3.67754	Hoxa1	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr1_+_153541020_153541071	3.64177	Hoxa1	ENSMUST00000152114.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8	ENSMUST00000111812.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr4_-_143026033_143026052	3.60724	Hoxa1	ENSMUST00000119654.2|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr9_-_4796142_4796159	3.59925	Hoxa1	ENSMUST00000063508.15|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr2_+_65676176_65676194	3.54503	Hoxa1	ENSMUST00000053910.10|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr3_-_89000591_89000663	3.43102	Hoxa1	ENSMUST00000090929.12|Rusc1|ENSMUSG00000041263.15|RUN and SH3 domain containing 1	ENSMUST00000052539.13|Rusc1|ENSMUSG00000041263.15|RUN and SH3 domain containing 1
mm39_v1_chr10_+_94412116_94412132	3.40673	Hoxa1	ENSMUST00000117929.2|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr4_+_43669266_43669329	3.29401	Hoxa1	ENSMUST00000107864.8|Tmem8b|ENSMUSG00000078716.11|transmembrane protein 8B
mm39_v1_chr19_-_41732104_41732145	2.82825	Hoxa1	ENSMUST00000025993.10|Slit1|ENSMUSG00000025020.12|slit guidance ligand 1
mm39_v1_chr5_+_137059522_137059555	2.79482	Hoxa1	ENSMUST00000187382.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr1_+_85822250_85822389	2.6613	Hoxa1	ENSMUST00000185569.2|Itm2c|ENSMUSG00000026223.16|integral membrane protein 2C
mm39_v1_chr6_-_136852792_136852821	2.59081	Hoxa1	ENSMUST00000032342.3|Mgp|ENSMUSG00000030218.3|matrix Gla protein
mm39_v1_chrX_+_55500170_55500264	2.51419	Hoxa1	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr11_-_118460736_118460827	2.49414	Hoxa1	ENSMUST00000136551.3|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr6_+_40302106_40302106	2.44097	Hoxa1	ENSMUST00000031977.12|Agk|ENSMUSG00000029916.12|acylglycerol kinase
mm39_v1_chr17_-_25300112_25300175	2.28191	Hoxa1	ENSMUST00000024984.7|Tmem204|ENSMUSG00000024168.9|transmembrane protein 204
mm39_v1_chr17_-_28841006_28841055	2.10014	Hoxa1	ENSMUST00000233353.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1
mm39_v1_chr3_-_79053182_79053237	2.08542	Hoxa1	ENSMUST00000118340.7|Rapgef2|ENSMUSG00000062232.15|Rap guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr2_+_119803230_119803384	2.05295	Hoxa1	ENSMUST00000229024.2|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr3_-_57202546_57202562	2.01673	Hoxa1	ENSMUST00000196506.2|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1
mm39_v1_chrX_+_109857866_109857886	1.96515	Hoxa1	ENSMUST00000078229.5|Pou3f4|ENSMUSG00000056854.5|POU domain, class 3, transcription factor 4
mm39_v1_chr2_+_32477069_32477145	1.93377	Hoxa1	ENSMUST00000102818.11|St6galnac4|ENSMUSG00000079442.13|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm39_v1_chr4_-_106657446_106657500	1.89993	Hoxa1	ENSMUST00000148688.2|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11
mm39_v1_chr8_-_91544021_91544021	1.78913	Hoxa1	ENSMUST00000209208.2|Gm19935|ENSMUSG00000110332.2|predicted gene, 19935
mm39_v1_chr9_+_121727421_121727490	1.74682	Hoxa1	ENSMUST00000214340.2|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2	ENSMUST00000050327.5|Ackr2|ENSMUSG00000044534.9|atypical chemokine receptor 2
mm39_v1_chr3_+_113824181_113824220	1.62433	Hoxa1	ENSMUST00000123619.8|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1	ENSMUST00000092155.12|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1
mm39_v1_chr17_-_28841370_28841496	1.61934	Hoxa1	ENSMUST00000233129.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000232751.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000233794.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000114767.3|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1
mm39_v1_chr7_-_144024451_144024512	1.59136	Hoxa1	ENSMUST00000033407.13|Cttn|ENSMUSG00000031078.16|cortactin
mm39_v1_chr16_+_16714333_16714462	1.49312	Hoxa1	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr16_+_38722666_38722678	1.40234	Hoxa1	ENSMUST00000023478.8|Igsf11|ENSMUSG00000022790.15|immunoglobulin superfamily, member 11
mm39_v1_chr16_-_10360893_10360928	1.39489	Hoxa1	ENSMUST00000184863.8|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript	ENSMUST00000038281.6|Dexi|ENSMUSG00000038055.13|dexamethasone-induced transcript
mm39_v1_chr11_+_24030663_24030706	1.33016	Hoxa1	ENSMUST00000118955.2|Bcl11a|ENSMUSG00000000861.16|B cell CLL/lymphoma 11A (zinc finger protein)
mm39_v1_chr4_-_108263873_108263943	1.31596	Hoxa1	ENSMUST00000184609.2|Gpx7|ENSMUSG00000028597.12|glutathione peroxidase 7
mm39_v1_chr7_-_102507962_102507972	1.30113	Hoxa1	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr9_+_110173253_110173272	1.27063	Hoxa1	ENSMUST00000199709.3|Scap|ENSMUSG00000032485.15|SREBF chaperone
mm39_v1_chr2_+_111136546_111136546	1.25469	Hoxa1	ENSMUST00000090329.2|Olfr1279|ENSMUSG00000109813.3|olfactory receptor 1279
mm39_v1_chr15_+_89095724_89095823	1.19915	Hoxa1	ENSMUST00000227951.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000226221.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000238818.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000228284.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2
mm39_v1_chrX_-_7999009_7999096	1.15143	Hoxa1	ENSMUST00000130832.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000033506.13|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000115623.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000153839.2|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13
mm39_v1_chr12_-_80306865_80306973	1.10864	Hoxa1	ENSMUST00000167327.2|Actn1|ENSMUSG00000015143.16|actinin, alpha 1
mm39_v1_chr1_-_43866910_43866960	1.10332	Hoxa1	ENSMUST00000153317.6|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000128261.2|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000126008.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000139451.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1
mm39_v1_chr11_-_40646090_40646138	1.05975	Hoxa1	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr3_-_152931392_152931420	0.979069	Hoxa1	ENSMUST00000199707.2|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr2_-_63014622_63014681	0.870145	Hoxa1	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr2_+_119803180_119803228	0.814929	Hoxa1	ENSMUST00000066058.8|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr15_+_9140614_9140664	0.811862	Hoxa1	ENSMUST00000227556.3|Lmbrd2|ENSMUSG00000039704.9|LMBR1 domain containing 2
mm39_v1_chr11_-_5848771_5848788	0.805254	Hoxa1	ENSMUST00000102921.4|Myl7|ENSMUSG00000020469.9|myosin, light polypeptide 7, regulatory
mm39_v1_chr5_+_125518609_125518678	0.786345	Hoxa1	ENSMUST00000049040.14|Bri3bp|ENSMUSG00000037905.14|Bri3 binding protein
mm39_v1_chr16_+_22926162_22926229	0.778447	Hoxa1	ENSMUST00000023599.13|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000168891.8|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr18_+_56695515_56695665	0.711225	Hoxa1	ENSMUST00000130163.8|Phax|ENSMUSG00000008301.12|phosphorylated adaptor for RNA export	ENSMUST00000132628.8|Phax|ENSMUSG00000008301.12|phosphorylated adaptor for RNA export
mm39_v1_chr7_-_103320398_103320398	0.707951	Hoxa1	ENSMUST00000062144.4|Olfr624|ENSMUSG00000045780.4|olfactory receptor 624
mm39_v1_chr4_+_128582519_128582588	0.66401	Hoxa1	ENSMUST00000106080.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr3_+_58433236_58433265	0.581319	Hoxa1	ENSMUST00000029387.15|Eif2a|ENSMUSG00000027810.15|eukaryotic translation initiation factor 2A
mm39_v1_chr9_+_58036345_58036371	0.55673	Hoxa1	ENSMUST00000085677.9|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
mm39_v1_chr7_+_141048191_141048306	0.544164	Hoxa1	ENSMUST00000211071.2|Cd151|ENSMUSG00000025510.15|CD151 antigen
mm39_v1_chr9_+_59496571_59496636	0.539818	Hoxa1	ENSMUST00000121266.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000118164.3|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr2_-_152793469_152793528	0.4968	Hoxa1	ENSMUST00000037715.7|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr10_+_73782857_73782903	0.49241	Hoxa1	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr3_+_55689921_55689940	0.478032	Hoxa1	ENSMUST00000075422.6|Mab21l1|ENSMUSG00000056947.6|mab-21-like 1
mm39_v1_chr3_+_58913234_58913286	0.476118	Hoxa1	ENSMUST00000040846.15|Med12l|ENSMUSG00000056476.14|mediator complex subunit 12-like
mm39_v1_chr7_+_106513407_106513407	0.436688	Hoxa1	ENSMUST00000098140.2|Olfr1532-ps1|ENSMUSG00000073899.4|olfactory receptor 1532, pseudogene 1
mm39_v1_chr2_-_104324035_104324098	0.417011	Hoxa1	ENSMUST00000111124.8|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr4_-_35845204_35845204	0.411184	Hoxa1	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr4_-_148021159_148021191	0.339425	Hoxa1	ENSMUST00000105712.2|Plod1|ENSMUSG00000019055.16|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm39_v1_chr5_-_138981842_138981878	0.330265	Hoxa1	ENSMUST00000110897.8|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha
mm39_v1_chrX_-_133062677_133062677	0.319748	Hoxa1	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr5_+_43672856_43672881	0.279209	Hoxa1	ENSMUST00000076939.10|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr11_-_102187445_102187507	0.276424	Hoxa1	ENSMUST00000107132.3|Atxn7l3|ENSMUSG00000059995.13|ataxin 7-like 3	ENSMUST00000073234.9|Atxn7l3|ENSMUSG00000059995.13|ataxin 7-like 3
mm39_v1_chr11_+_103664976_103665020	0.265167	Hoxa1	ENSMUST00000000127.6|Wnt3|ENSMUSG00000000125.6|wingless-type MMTV integration site family, member 3
mm39_v1_chr18_-_56695333_56695400	0.235857	Hoxa1	ENSMUST00000066208.13|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1	ENSMUST00000172734.8|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr11_+_4833186_4833222	0.217838	Hoxa1	ENSMUST00000139737.2|Nipsnap1|ENSMUSG00000034285.16|nipsnap homolog 1
mm39_v1_chr16_-_18695267_18695320	0.201892	Hoxa1	ENSMUST00000119273.2|Mrpl40|ENSMUSG00000022706.17|mitochondrial ribosomal protein L40
mm39_v1_chr2_-_165717697_165717753	0.177633	Hoxa1	ENSMUST00000153655.8|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8
mm39_v1_chr13_+_113429690_113429759	0.147016	Hoxa1	ENSMUST00000136755.10|Cspg4b|ENSMUSG00000021763.18|chondroitin sulfate proteoglycan 4B
mm39_v1_chr1_+_74700952_74701001	0.0951915	Hoxa1	ENSMUST00000129890.8|Ttll4|ENSMUSG00000033257.15|tubulin tyrosine ligase-like family, member 4
mm39_v1_chr3_-_126918491_126918535	0.0770355	Hoxa1	ENSMUST00000238781.2|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr1_-_157240138_157240191	0.0667184	Hoxa1	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr7_+_103628383_103628383	0.0582132	Hoxa1	ENSMUST00000098185.2|Olfr635|ENSMUSG00000094520.5|olfactory receptor 635
mm39_v1_chr9_+_58036604_58036632	0.00190073	Hoxa1	ENSMUST00000034880.10|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
