mm39_v1_chr7_-_135130374_135130389	5.73972	Hoxa11_Hoxc12	ENSMUST00000053716.8|Clrn3|ENSMUSG00000050866.8|clarin 3
mm39_v1_chr18_-_38342815_38342839	4.46319	Hoxa11_Hoxc12	ENSMUST00000057185.13|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr18_-_10706701_10706771	4.26614	Hoxa11_Hoxc12	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr17_+_35295909_35295927	4.26589	Hoxa11_Hoxc12	ENSMUST00000013910.5|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr17_+_35295894_35295907	4.03635	Hoxa11_Hoxc12	ENSMUST00000172678.8|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr4_+_134042423_134042437	3.88635	Hoxa11_Hoxc12	ENSMUST00000105875.8|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63	ENSMUST00000030638.7|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63
mm39_v1_chr17_+_8502682_8502693	3.84994	Hoxa11_Hoxc12	ENSMUST00000124023.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr17_+_35295849_35295891	3.46029	Hoxa11_Hoxc12	ENSMUST00000172494.8|Ly6g6e|ENSMUSG00000013766.12|lymphocyte antigen 6 complex, locus G6E
mm39_v1_chr4_-_138095277_138095319	3.38053	Hoxa11_Hoxc12	ENSMUST00000030535.4|Cda|ENSMUSG00000028755.4|cytidine deaminase
mm39_v1_chr15_-_101759212_101759229	3.35414	Hoxa11_Hoxc12	ENSMUST00000023790.5|Krt1|ENSMUSG00000046834.8|keratin 1
mm39_v1_chr2_-_10084866_10084987	3.12217	Hoxa11_Hoxc12	ENSMUST00000130067.2|Atp5c1|ENSMUSG00000025781.15|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	ENSMUST00000139810.8|Atp5c1|ENSMUSG00000025781.15|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm39_v1_chr3_+_129326004_129326089	3.10945	Hoxa11_Hoxc12	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr17_+_8502594_8502661	3.00985	Hoxa11_Hoxc12	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr4_+_144340236_144340277	2.90868	Hoxa11_Hoxc12	ENSMUST00000094510.4|Aadacl4|ENSMUSG00000070609.4|arylacetamide deacetylase like 4
mm39_v1_chr11_-_43492367_43492395	2.87017	Hoxa11_Hoxc12	ENSMUST00000020672.5|Fabp6|ENSMUSG00000020405.5|fatty acid binding protein 6
mm39_v1_chr9_+_62765362_62765420	2.52439	Hoxa11_Hoxc12	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr15_+_10177709_10177741	2.38765	Hoxa11_Hoxc12	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr6_-_52181393_52181567	2.38696	Hoxa11_Hoxc12	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr1_+_106908709_106908715	2.34159	Hoxa11_Hoxc12	ENSMUST00000027564.8|Serpinb13|ENSMUSG00000048775.11|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
mm39_v1_chr5_+_32768515_32768589	2.06784	Hoxa11_Hoxc12	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr19_-_4062656_4062736	2.03714	Hoxa11_Hoxc12	ENSMUST00000134479.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000128787.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000237862.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000236203.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000133474.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr19_+_58748132_58748177	1.95839	Hoxa11_Hoxc12	ENSMUST00000026081.5|Pnliprp2|ENSMUSG00000025091.5|pancreatic lipase-related protein 2
mm39_v1_chr12_+_78273356_78273432	1.91777	Hoxa11_Hoxc12	ENSMUST00000110388.10|Gphn|ENSMUSG00000047454.13|gephyrin
mm39_v1_chr3_-_92627651_92627666	1.87272	Hoxa11_Hoxc12	ENSMUST00000047153.4|Lce1f|ENSMUSG00000042124.6|late cornified envelope 1F
mm39_v1_chr1_+_87998487_87998522	1.85756	Hoxa11_Hoxc12	ENSMUST00000073772.5|Ugt1a9|ENSMUSG00000090175.2|UDP glucuronosyltransferase 1 family, polypeptide A9
mm39_v1_chr19_-_4062738_4062806	1.84878	Hoxa11_Hoxc12	ENSMUST00000136921.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000042497.14|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr9_-_50571080_50571107	1.83298	Hoxa11_Hoxc12	ENSMUST00000034567.4|Dlat|ENSMUSG00000000168.11|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm39_v1_chr12_+_75355082_75355096	1.81167	Hoxa11_Hoxc12	ENSMUST00000118602.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000118966.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000055390.6|Rhoj|ENSMUSG00000046768.14|ras homolog family member J
mm39_v1_chr7_+_51528715_51528750	1.79616	Hoxa11_Hoxc12	ENSMUST00000051912.13|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr6_-_52217821_52217834	1.75782	Hoxa11_Hoxc12	ENSMUST00000121043.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr3_+_81904229_81904229	1.74022	Hoxa11_Hoxc12	ENSMUST00000029641.10|Asic5|ENSMUSG00000028008.11|acid-sensing (proton-gated) ion channel family member 5
mm39_v1_chr2_-_165996716_165996779	1.65738	Hoxa11_Hoxc12	ENSMUST00000139266.2|Sulf2|ENSMUSG00000006800.15|sulfatase 2
mm39_v1_chr2_+_74542255_74542283	1.63115	Hoxa11_Hoxc12	ENSMUST00000111983.9|Hoxd3|ENSMUSG00000079277.10|homeobox D3
mm39_v1_chr11_+_96194333_96194378	1.5508	Hoxa11_Hoxc12	ENSMUST00000049272.5|Hoxb5|ENSMUSG00000038700.5|homeobox B5
mm39_v1_chr3_-_144555062_144555118	1.48617	Hoxa11_Hoxc12	ENSMUST00000159989.2|Clca3b|ENSMUSG00000037033.10|chloride channel accessory 3B
mm39_v1_chr13_-_54897660_54897706	1.47241	Hoxa11_Hoxc12	ENSMUST00000135343.2|Gprin1|ENSMUSG00000069227.5|G protein-regulated inducer of neurite outgrowth 1
mm39_v1_chr13_+_24023428_24023453	1.4655	Hoxa11_Hoxc12	ENSMUST00000091698.12|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000110422.3|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000166467.9|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr7_+_67297152_67297204	1.39368	Hoxa11_Hoxc12	ENSMUST00000032774.16|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23	ENSMUST00000107471.8|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23
mm39_v1_chr1_+_107288928_107288928	1.38827	Hoxa11_Hoxc12	ENSMUST00000191425.7|Serpinb11|ENSMUSG00000026327.9|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11
mm39_v1_chr7_+_51528788_51528813	1.38353	Hoxa11_Hoxc12	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr1_+_178356678_178356699	1.35752	Hoxa11_Hoxc12	ENSMUST00000161017.8|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chrX_+_132809166_132809180	1.35315	Hoxa11_Hoxc12	ENSMUST00000033606.15|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr2_+_22958179_22958253	1.34232	Hoxa11_Hoxc12	ENSMUST00000227663.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000028121.15|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000227809.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000144088.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr7_-_46445305_46445508	1.27674	Hoxa11_Hoxc12	ENSMUST00000107653.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000107654.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000014562.14|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000152759.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr11_-_30936326_30936375	1.2648	Hoxa11_Hoxc12	ENSMUST00000020553.5|Chac2|ENSMUSG00000020309.7|ChaC, cation transport regulator 2	ENSMUST00000101394.5|Chac2|ENSMUSG00000020309.7|ChaC, cation transport regulator 2
mm39_v1_chr1_+_74752710_74752733	1.22123	Hoxa11_Hoxc12	ENSMUST00000027356.7|Cyp27a1|ENSMUSG00000026170.7|cytochrome P450, family 27, subfamily a, polypeptide 1
mm39_v1_chr1_-_136888118_136888234	1.22086	Hoxa11_Hoxc12	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr13_-_35211060_35211082	1.16267	Hoxa11_Hoxc12	ENSMUST00000170538.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2	ENSMUST00000163280.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2
mm39_v1_chr7_-_46445085_46445146	1.16095	Hoxa11_Hoxc12	ENSMUST00000123725.2|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr4_-_144291704_144291771	1.15447	Hoxa11_Hoxc12	ENSMUST00000105748.2|Aadacl4fm2|ENSMUSG00000078506.2|AADACL4 family member 2
mm39_v1_chrX_-_7185424_7185527	1.13923	Hoxa11_Hoxc12	ENSMUST00000115746.8|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr19_+_10160884_10160918	1.10768	Hoxa11_Hoxc12	ENSMUST00000236594.2|Fads1|ENSMUSG00000010663.6|fatty acid desaturase 1
mm39_v1_chr13_+_24023386_24023425	1.1055	Hoxa11_Hoxc12	ENSMUST00000039721.14|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr9_-_106125055_106125073	1.10237	Hoxa11_Hoxc12	ENSMUST00000074082.13|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr3_-_141875070_141875186	1.09015	Hoxa11_Hoxc12	ENSMUST00000106230.2|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr9_+_108566513_108566552	1.04447	Hoxa11_Hoxc12	ENSMUST00000192344.2|Prkar2a|ENSMUSG00000032601.14|protein kinase, cAMP dependent regulatory, type II alpha
mm39_v1_chr16_-_16418397_16418439	1.04045	Hoxa11_Hoxc12	ENSMUST00000159542.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr6_-_52195663_52195696	1.03875	Hoxa11_Hoxc12	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chrX_+_132809189_132809213	1.02332	Hoxa11_Hoxc12	ENSMUST00000113304.2|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr7_-_141015240_141015310	1.0233	Hoxa11_Hoxc12	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr1_-_74163575_74163626	1.02119	Hoxa11_Hoxc12	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr11_-_97590460_97590519	1.01396	Hoxa11_Hoxc12	ENSMUST00000103148.8|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2	ENSMUST00000169807.8|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr19_+_29923182_29923199	1.01235	Hoxa11_Hoxc12	ENSMUST00000025724.9|Il33|ENSMUSG00000024810.17|interleukin 33
mm39_v1_chr5_-_116162415_116162567	1.00575	Hoxa11_Hoxc12	ENSMUST00000031486.14|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit	ENSMUST00000111999.8|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm39_v1_chr9_-_106124917_106124968	0.944651	Hoxa11_Hoxc12	ENSMUST00000112524.9|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1	ENSMUST00000219129.2|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr19_+_39275518_39275548	0.937263	Hoxa11_Hoxc12	ENSMUST00000003137.15|Cyp2c29|ENSMUSG00000003053.18|cytochrome P450, family 2, subfamily c, polypeptide 29
mm39_v1_chr7_-_100021514_100021514	0.934203	Hoxa11_Hoxc12	ENSMUST00000032963.10|Ppme1|ENSMUSG00000030718.10|protein phosphatase methylesterase 1
mm39_v1_chr16_+_88812172_88812172	0.922341	Hoxa11_Hoxc12	ENSMUST00000089106.4|Gm10229|ENSMUSG00000068075.4|predicted gene 10229
mm39_v1_chr1_-_128256048_128256063	0.902125	Hoxa11_Hoxc12	ENSMUST00000073490.7|Lct|ENSMUSG00000026354.9|lactase
mm39_v1_chr2_+_15531281_15531293	0.896598	Hoxa11_Hoxc12	ENSMUST00000146205.3|Malrd1|ENSMUSG00000075520.6|MAM and LDL receptor class A domain containing 1
mm39_v1_chr19_-_13075176_13075255	0.880333	Hoxa11_Hoxc12	ENSMUST00000208913.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457	ENSMUST00000215229.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr7_-_85985625_85985625	0.876431	Hoxa11_Hoxc12	ENSMUST00000069279.5|Olfr307|ENSMUSG00000055610.6|olfactory receptor 307
mm39_v1_chrX_-_7185529_7185624	0.838918	Hoxa11_Hoxc12	ENSMUST00000128319.2|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr13_+_65660492_65660492	0.8296	Hoxa11_Hoxc12	ENSMUST00000081471.3|Gm10139|ENSMUSG00000063905.3|predicted gene 10139
mm39_v1_chr7_+_43284131_43284165	0.812083	Hoxa11_Hoxc12	ENSMUST00000032663.10|Ceacam18|ENSMUSG00000030472.10|carcinoembryonic antigen-related cell adhesion molecule 18
mm39_v1_chr19_-_13074935_13074935	0.808405	Hoxa11_Hoxc12	ENSMUST00000214561.3|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr2_+_130975417_130975417	0.805233	Hoxa11_Hoxc12	ENSMUST00000110225.2|Gm11037|ENSMUSG00000079039.2|predicted gene 11037
mm39_v1_chr14_+_80237691_80237749	0.79978	Hoxa11_Hoxc12	ENSMUST00000228749.2|Olfm4|ENSMUSG00000022026.8|olfactomedin 4	ENSMUST00000088735.4|Olfm4|ENSMUSG00000022026.8|olfactomedin 4
mm39_v1_chr7_+_28240262_28240340	0.75697	Hoxa11_Hoxc12	ENSMUST00000119180.4|Sycn|ENSMUSG00000084174.4|syncollin
mm39_v1_chr6_+_149043136_149043162	0.732732	Hoxa11_Hoxc12	ENSMUST00000166416.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111551.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr2_+_20742115_20742152	0.731371	Hoxa11_Hoxc12	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr14_+_55120777_55120848	0.729871	Hoxa11_Hoxc12	ENSMUST00000022806.10|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr6_+_149043011_149043124	0.718484	Hoxa11_Hoxc12	ENSMUST00000179873.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000047531.16|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111548.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111547.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000134306.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000147934.4|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr14_-_55909314_55909378	0.712052	Hoxa11_Hoxc12	ENSMUST00000163750.8|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr18_+_65276629_65276673	0.707633	Hoxa11_Hoxc12	ENSMUST00000235310.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr12_-_101942463_101942513	0.671676	Hoxa11_Hoxc12	ENSMUST00000221422.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr14_+_65595838_65595991	0.648607	Hoxa11_Hoxc12	ENSMUST00000224623.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr6_-_142418801_142418841	0.637353	Hoxa11_Hoxc12	ENSMUST00000032371.8|Gys2|ENSMUSG00000030244.8|glycogen synthase 2
mm39_v1_chr11_+_59197746_59197761	0.631983	Hoxa11_Hoxc12	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr11_+_81936531_81936547	0.626613	Hoxa11_Hoxc12	ENSMUST00000021011.3|Ccl7|ENSMUSG00000035373.3|chemokine (C-C motif) ligand 7
mm39_v1_chr17_-_46985207_46985278	0.61506	Hoxa11_Hoxc12	ENSMUST00000232697.2|Rrp36|ENSMUSG00000023971.10|ribosomal RNA processing 36	ENSMUST00000233136.2|Rrp36|ENSMUSG00000023971.10|ribosomal RNA processing 36
mm39_v1_chr4_+_135870808_135870808	0.605543	Hoxa11_Hoxc12	ENSMUST00000008016.3|Id3|ENSMUSG00000007872.4|inhibitor of DNA binding 3
mm39_v1_chr3_+_79793237_79793309	0.605124	Hoxa11_Hoxc12	ENSMUST00000029567.9|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr16_+_33614715_33614737	0.559653	Hoxa11_Hoxc12	ENSMUST00000023520.7|Muc13|ENSMUSG00000022824.13|mucin 13, epithelial transmembrane
mm39_v1_chr7_-_30312246_30312305	0.558139	Hoxa11_Hoxc12	ENSMUST00000006476.6|Upk1a|ENSMUSG00000006313.6|uroplakin 1A
mm39_v1_chr2_-_89774457_89774457	0.554982	Hoxa11_Hoxc12	ENSMUST00000090695.3|Olfr1259|ENSMUSG00000068806.6|olfactory receptor 1259
mm39_v1_chr7_-_141014477_141014517	0.552145	Hoxa11_Hoxc12	ENSMUST00000106007.10|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000150026.2|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000202840.4|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000133206.9|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr13_+_22462487_22462487	0.530292	Hoxa11_Hoxc12	ENSMUST00000091736.5|Vmn1r195|ENSMUSG00000069296.5|vomeronasal 1 receptor 195
mm39_v1_chr14_-_55909527_55909581	0.525675	Hoxa11_Hoxc12	ENSMUST00000010520.10|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr15_-_77854711_77854845	0.513258	Hoxa11_Hoxc12	ENSMUST00000230419.2|Eif3d|ENSMUSG00000016554.10|eukaryotic translation initiation factor 3, subunit D
mm39_v1_chr6_+_40448286_40448326	0.50937	Hoxa11_Hoxc12	ENSMUST00000114779.9|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chrX_+_73314418_73314585	0.500851	Hoxa11_Hoxc12	ENSMUST00000008826.14|Rpl10|ENSMUSG00000008682.14|ribosomal protein L10	ENSMUST00000151702.8|Rpl10|ENSMUSG00000008682.14|ribosomal protein L10	ENSMUST00000074085.12|Rpl10|ENSMUSG00000008682.14|ribosomal protein L10	ENSMUST00000135690.2|Rpl10|ENSMUSG00000008682.14|ribosomal protein L10
mm39_v1_chr4_-_150087587_150087607	0.470557	Hoxa11_Hoxc12	ENSMUST00000084117.13|H6pd|ENSMUSG00000028980.15|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm39_v1_chr18_-_44292952_44293020	0.469204	Hoxa11_Hoxc12	ENSMUST00000181652.9|Gm10267|ENSMUSG00000069385.11|predicted gene 10267
mm39_v1_chr15_+_100321074_100321074	0.437338	Hoxa11_Hoxc12	ENSMUST00000148928.2|Gm5475|ENSMUSG00000087444.2|predicted gene 5475
mm39_v1_chr16_+_87350202_87350230	0.431082	Hoxa11_Hoxc12	ENSMUST00000026700.8|Map3k7cl|ENSMUSG00000025610.8|Map3k7 C-terminal like
mm39_v1_chr10_+_40559249_40559278	0.429477	Hoxa11_Hoxc12	ENSMUST00000058747.4|Mettl24|ENSMUSG00000045555.4|methyltransferase like 24
mm39_v1_chr14_+_55909816_55909840	0.426482	Hoxa11_Hoxc12	ENSMUST00000227178.2|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2	ENSMUST00000227914.2|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2
mm39_v1_chr1_-_173054760_173054814	0.421858	Hoxa11_Hoxc12	ENSMUST00000193017.2|Fcer1a|ENSMUSG00000005339.11|Fc receptor, IgE, high affinity I, alpha polypeptide	ENSMUST00000049706.11|Fcer1a|ENSMUSG00000005339.11|Fc receptor, IgE, high affinity I, alpha polypeptide
mm39_v1_chr5_+_64387742_64387792	0.40107	Hoxa11_Hoxc12	ENSMUST00000119756.6|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr4_-_133329479_133329479	0.397203	Hoxa11_Hoxc12	ENSMUST00000057311.4|Sfn|ENSMUSG00000047281.4|stratifin
mm39_v1_chr11_+_55104609_55104640	0.396981	Hoxa11_Hoxc12	ENSMUST00000108867.2|Slc36a1|ENSMUSG00000020261.16|solute carrier family 36 (proton/amino acid symporter), member 1
mm39_v1_chr9_+_20148415_20148415	0.388584	Hoxa11_Hoxc12	ENSMUST00000086474.6|Olfr872|ENSMUSG00000066897.9|olfactory receptor 872
mm39_v1_chr6_+_40448334_40448398	0.374889	Hoxa11_Hoxc12	ENSMUST00000031971.13|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr11_-_99987051_99987068	0.373043	Hoxa11_Hoxc12	ENSMUST00000103127.4|Krt35|ENSMUSG00000048013.10|keratin 35
mm39_v1_chr9_+_40785277_40785423	0.366344	Hoxa11_Hoxc12	ENSMUST00000067375.5|Bsx|ENSMUSG00000054360.5|brain specific homeobox
mm39_v1_chr3_-_88366159_88366205	0.36338	Hoxa11_Hoxc12	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr13_+_16189041_16189060	0.359946	Hoxa11_Hoxc12	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr5_+_128677863_128677912	0.354852	Hoxa11_Hoxc12	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr6_+_83985495_83985572	0.351442	Hoxa11_Hoxc12	ENSMUST00000113821.8|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr4_-_129271909_129271909	0.34882	Hoxa11_Hoxc12	ENSMUST00000030610.3|Zbtb8a|ENSMUSG00000028807.3|zinc finger and BTB domain containing 8a
mm39_v1_chr13_+_98399750_98399812	0.348307	Hoxa11_Hoxc12	ENSMUST00000022164.16|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr14_+_55909692_55909755	0.347833	Hoxa11_Hoxc12	ENSMUST00000002397.7|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2
mm39_v1_chr6_+_43130196_43130196	0.344632	Hoxa11_Hoxc12	ENSMUST00000095953.3|Olfr237|ENSMUSG00000094200.3|olfactory receptor 237
mm39_v1_chr16_-_59092995_59092995	0.333057	Hoxa11_Hoxc12	ENSMUST00000216834.2|Olfr201|ENSMUSG00000074995.3|olfactory receptor 201
mm39_v1_chr17_-_46985181_46985206	0.325575	Hoxa11_Hoxc12	ENSMUST00000024766.7|Rrp36|ENSMUSG00000023971.10|ribosomal RNA processing 36
mm39_v1_chr2_+_83642910_83642987	0.308901	Hoxa11_Hoxc12	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr1_+_161222980_161223013	0.307238	Hoxa11_Hoxc12	ENSMUST00000028024.5|Tnfsf4|ENSMUSG00000026700.5|tumor necrosis factor (ligand) superfamily, member 4
mm39_v1_chr19_-_58932026_58932086	0.295311	Hoxa11_Hoxc12	ENSMUST00000237297.2|Hspa12a|ENSMUSG00000025092.8|heat shock protein 12A
mm39_v1_chr11_-_5492175_5492221	0.29077	Hoxa11_Hoxc12	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr5_-_106606032_106606032	0.280616	Hoxa11_Hoxc12	ENSMUST00000086795.8|Barhl2|ENSMUSG00000034384.12|BarH like homeobox 2
mm39_v1_chr11_+_49321254_49321254	0.273874	Hoxa11_Hoxc12	ENSMUST00000203369.2|Olfr1389|ENSMUSG00000107573.3|olfactory receptor 1389
mm39_v1_chr6_+_42263609_42263627	0.271152	Hoxa11_Hoxc12	ENSMUST00000238845.2|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1	ENSMUST00000031894.13|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr8_+_84016970_84016987	0.270963	Hoxa11_Hoxc12	ENSMUST00000034146.5|Ucp1|ENSMUSG00000031710.5|uncoupling protein 1 (mitochondrial, proton carrier)
mm39_v1_chr2_+_87576198_87576198	0.267039	Hoxa11_Hoxc12	ENSMUST00000217572.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr14_+_55120875_55120972	0.265353	Hoxa11_Hoxc12	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr4_-_62069046_62069100	0.263534	Hoxa11_Hoxc12	ENSMUST00000077719.4|Mup21|ENSMUSG00000066153.3|major urinary protein 21
mm39_v1_chr16_-_57051829_57051872	0.259866	Hoxa11_Hoxc12	ENSMUST00000023431.8|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr11_-_76386190_76386282	0.258508	Hoxa11_Hoxc12	ENSMUST00000108408.9|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr12_-_101943134_101943323	0.255658	Hoxa11_Hoxc12	ENSMUST00000221227.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr16_+_87151073_87151137	0.25543	Hoxa11_Hoxc12	ENSMUST00000054442.11|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000118310.8|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000120284.8|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)	ENSMUST00000118115.2|N6amt1|ENSMUSG00000044442.12|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm39_v1_chr13_+_23433408_23433408	0.251882	Hoxa11_Hoxc12	ENSMUST00000091719.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223
mm39_v1_chr15_+_37425798_37425798	0.245247	Hoxa11_Hoxc12	ENSMUST00000022897.2|4930447A16Rik|ENSMUSG00000022288.2|RIKEN cDNA 4930447A16 gene
mm39_v1_chr7_-_41098120_41098120	0.238431	Hoxa11_Hoxc12	ENSMUST00000233793.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000233555.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000165029.3|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57
mm39_v1_chr7_-_85974838_85974838	0.237243	Hoxa11_Hoxc12	ENSMUST00000214977.2|Olfr308|ENSMUSG00000054498.7|olfactory receptor 308
mm39_v1_chr6_+_40448400_40448460	0.233976	Hoxa11_Hoxc12	ENSMUST00000121360.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117411.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117830.2|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr19_-_46338686_46338741	0.229009	Hoxa11_Hoxc12	ENSMUST00000189008.3|2310034G01Rik|ENSMUSG00000099655.3|RIKEN cDNA 2310034G01 gene
mm39_v1_chr11_+_60370741_60370741	0.228364	Hoxa11_Hoxc12	ENSMUST00000126522.4|Myo15|ENSMUSG00000042678.18|myosin XV
mm39_v1_chr15_-_101336669_101336685	0.210381	Hoxa11_Hoxc12	ENSMUST00000081945.5|Krt87|ENSMUSG00000047641.9|keratin 87
mm39_v1_chr2_+_87574098_87574098	0.207956	Hoxa11_Hoxc12	ENSMUST00000214723.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr9_+_38119661_38119661	0.207354	Hoxa11_Hoxc12	ENSMUST00000211975.3|Olfr893|ENSMUSG00000093901.4|olfactory receptor 893
mm39_v1_chr1_+_161796854_161796881	0.203815	Hoxa11_Hoxc12	ENSMUST00000160881.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C	ENSMUST00000159648.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C
mm39_v1_chr7_-_104677667_104677667	0.199412	Hoxa11_Hoxc12	ENSMUST00000215899.2|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675	ENSMUST00000214318.3|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675
mm39_v1_chr9_+_38026494_38026494	0.19703	Hoxa11_Hoxc12	ENSMUST00000217286.2|Olfr889|ENSMUSG00000096356.4|olfactory receptor 889
mm39_v1_chr6_+_42263644_42263790	0.193106	Hoxa11_Hoxc12	ENSMUST00000163936.8|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr14_-_29443792_29443842	0.192566	Hoxa11_Hoxc12	ENSMUST00000022567.9|Cacna2d3|ENSMUSG00000021991.10|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm39_v1_chr17_-_36983111_36983111	0.186526	Hoxa11_Hoxc12	ENSMUST00000041662.3|H2-M1|ENSMUSG00000037334.3|histocompatibility 2, M region locus 1
mm39_v1_chr14_+_49409659_49409712	0.179742	Hoxa11_Hoxc12	ENSMUST00000153488.9|Naa30|ENSMUSG00000036282.16|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm39_v1_chr2_+_5850053_5850122	0.179613	Hoxa11_Hoxc12	ENSMUST00000127116.7|Nudt5|ENSMUSG00000025817.13|nudix (nucleoside diphosphate linked moiety X)-type motif 5	ENSMUST00000194933.2|Nudt5|ENSMUSG00000025817.13|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm39_v1_chr16_+_65320163_65320200	0.15847	Hoxa11_Hoxc12	ENSMUST00000184525.2|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1
mm39_v1_chr10_+_89906956_89906982	0.157782	Hoxa11_Hoxc12	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr2_+_111327525_111327525	0.147522	Hoxa11_Hoxc12	ENSMUST00000121345.4|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chr11_+_62349238_62349295	0.14481	Hoxa11_Hoxc12	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
mm39_v1_chr11_-_102588536_102588608	0.14213	Hoxa11_Hoxc12	ENSMUST00000164506.3|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43	ENSMUST00000092569.13|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43
mm39_v1_chr3_+_89084770_89084850	0.141361	Hoxa11_Hoxc12	ENSMUST00000029684.15|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000120697.8|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000098941.5|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3
mm39_v1_chrX_+_35664933_35664933	0.141108	Hoxa11_Hoxc12	ENSMUST00000115253.3|Gm6268|ENSMUSG00000079642.3|predicted gene 6268
mm39_v1_chr3_+_126390951_126390964	0.135587	Hoxa11_Hoxc12	ENSMUST00000171289.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr1_+_72346572_72346609	0.13454	Hoxa11_Hoxc12	ENSMUST00000027379.10|Xrcc5|ENSMUSG00000026187.10|X-ray repair complementing defective repair in Chinese hamster cells 5
mm39_v1_chr11_+_115294560_115294603	0.13314	Hoxa11_Hoxc12	ENSMUST00000153983.8|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000106539.10|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000103036.5|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58
mm39_v1_chr16_-_57051727_57051768	0.132873	Hoxa11_Hoxc12	ENSMUST00000226586.2|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr11_-_94398162_94398181	0.1325	Hoxa11_Hoxc12	ENSMUST00000040692.9|Mycbpap|ENSMUSG00000039110.16|MYCBP associated protein
mm39_v1_chr6_-_89853395_89853395	0.130788	Hoxa11_Hoxc12	ENSMUST00000227279.2|Vmn1r42|ENSMUSG00000068232.4|vomeronasal 1 receptor 42	ENSMUST00000228709.2|Vmn1r43|ENSMUSG00000068231.6|vomeronasal 1 receptor 43	ENSMUST00000226983.2|Vmn1r43|ENSMUSG00000068231.6|vomeronasal 1 receptor 43
mm39_v1_chr11_-_62348599_62348648	0.130415	Hoxa11_Hoxc12	ENSMUST00000127471.9|Ncor1|ENSMUSG00000018501.18|nuclear receptor co-repressor 1
mm39_v1_chrY_+_2599099_2599099	0.129845	Hoxa11_Hoxc12	ENSMUST00000163651.2|H2al2c|ENSMUSG00000094881.4|H2A histone family member L2C
mm39_v1_chr2_-_130471891_130471958	0.126147	Hoxa11_Hoxc12	ENSMUST00000110262.3|Fastkd5|ENSMUSG00000079043.4|FAST kinase domains 5	ENSMUST00000028761.5|Ubox5|ENSMUSG00000027300.11|U box domain containing 5
mm39_v1_chr2_-_88913831_88913857	0.124534	Hoxa11_Hoxc12	ENSMUST00000217421.2|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219	ENSMUST00000214442.2|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219	ENSMUST00000215225.3|Olfr1219|ENSMUSG00000075104.4|olfactory receptor 1219
mm39_v1_chr19_-_40982576_40982591	0.12162	Hoxa11_Hoxc12	ENSMUST00000117695.8|Blnk|ENSMUSG00000061132.14|B cell linker
mm39_v1_chr14_+_52680447_52680508	0.118119	Hoxa11_Hoxc12	ENSMUST00000205900.3|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000215030.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206100.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206718.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509
mm39_v1_chr2_+_28095660_28095684	0.113475	Hoxa11_Hoxc12	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr3_+_126391046_126391076	0.111211	Hoxa11_Hoxc12	ENSMUST00000106401.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr11_+_117375194_117375194	0.109171	Hoxa11_Hoxc12	ENSMUST00000092394.4|Gm11733|ENSMUSG00000069588.4|predicted gene 11733
mm39_v1_chr13_-_12479804_12479842	0.108711	Hoxa11_Hoxc12	ENSMUST00000124888.8|Lgals8|ENSMUSG00000057554.14|lectin, galactose binding, soluble 8
mm39_v1_chr2_-_86109346_86109432	0.107861	Hoxa11_Hoxc12	ENSMUST00000217294.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000217245.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000216432.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051
mm39_v1_chr15_+_82183143_82183165	0.106601	Hoxa11_Hoxc12	ENSMUST00000023089.5|Wbp2nl|ENSMUSG00000022455.5|WBP2 N-terminal like
mm39_v1_chr14_+_27344385_27344500	0.0945662	Hoxa11_Hoxc12	ENSMUST00000210135.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000090302.6|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000211087.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr10_+_78853158_78853158	0.0905506	Hoxa11_Hoxc12	ENSMUST00000080730.2|Olfr1351|ENSMUSG00000063216.4|olfactory receptor 1351
mm39_v1_chr2_-_146927365_146927406	0.087451	Hoxa11_Hoxc12	ENSMUST00000067020.3|Nkx2-4|ENSMUSG00000054160.3|NK2 homeobox 4
mm39_v1_chr11_-_4391082_4391105	0.0838868	Hoxa11_Hoxc12	ENSMUST00000109949.8|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2	ENSMUST00000130174.2|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2
mm39_v1_chr18_-_46413886_46413908	0.0813754	Hoxa11_Hoxc12	ENSMUST00000236999.2|Pggt1b|ENSMUSG00000024477.5|protein geranylgeranyltransferase type I, beta subunit
mm39_v1_chr4_-_118549953_118549953	0.0809226	Hoxa11_Hoxc12	ENSMUST00000216226.2|Olfr1342|ENSMUSG00000043383.6|olfactory receptor 1342
mm39_v1_chr6_+_29471436_29471496	0.0783343	Hoxa11_Hoxc12	ENSMUST00000171317.2|Atp6v1fnb|ENSMUSG00000090685.2|Atp6v1f neighbor
mm39_v1_chr7_-_119744509_119744515	0.0705094	Hoxa11_Hoxc12	ENSMUST00000208874.2|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2	ENSMUST00000033207.6|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2
mm39_v1_chr11_-_4390745_4390745	0.0595392	Hoxa11_Hoxc12	ENSMUST00000109948.8|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2
mm39_v1_chr11_-_58521327_58521327	0.0560749	Hoxa11_Hoxc12	ENSMUST00000214132.2|Olfr323|ENSMUSG00000043880.6|olfactory receptor 323
mm39_v1_chr19_+_13890894_13890894	0.0544903	Hoxa11_Hoxc12	ENSMUST00000216623.2|Olfr1505|ENSMUSG00000062314.4|olfactory receptor 1505	ENSMUST00000216835.2|Olfr1505|ENSMUSG00000062314.4|olfactory receptor 1505
mm39_v1_chr11_-_58446443_58446462	0.0459969	Hoxa11_Hoxc12	ENSMUST00000216725.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000215717.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000108824.3|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328
mm39_v1_chr2_-_36752671_36752672	0.0426359	Hoxa11_Hoxc12	ENSMUST00000213676.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351	ENSMUST00000215137.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351
mm39_v1_chr6_+_108190163_108190231	0.0395959	Hoxa11_Hoxc12	ENSMUST00000203615.3|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr3_+_69629318_69629404	0.0352775	Hoxa11_Hoxc12	ENSMUST00000029358.15|Nmd3|ENSMUSG00000027787.15|NMD3 ribosome export adaptor
mm39_v1_chr1_-_18335304_18335363	0.0258541	Hoxa11_Hoxc12	ENSMUST00000097817.4|Defb41|ENSMUSG00000067773.7|defensin beta 41	ENSMUST00000088463.2|Defb41|ENSMUSG00000067773.7|defensin beta 41
mm39_v1_chr17_-_20455309_20455314	0.02575	Hoxa11_Hoxc12	ENSMUST00000232877.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233461.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233468.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000232768.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233950.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000232803.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233786.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105
mm39_v1_chrX_-_48823936_48823936	0.0153029	Hoxa11_Hoxc12	ENSMUST00000215373.3|Olfr1321|ENSMUSG00000067971.6|olfactory receptor 1321
mm39_v1_chr8_+_34143266_34143266	0.0131666	Hoxa11_Hoxc12	ENSMUST00000033992.9|Gsr|ENSMUSG00000031584.17|glutathione reductase
