mm39_v1_chr2_+_172994841_172994873	4.27445	Hoxa3	ENSMUST00000029017.6|Pck1|ENSMUSG00000027513.12|phosphoenolpyruvate carboxykinase 1, cytosolic
mm39_v1_chr14_+_79753055_79753148	3.57731	Hoxa3	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr17_-_71160477_71160543	3.52261	Hoxa3	ENSMUST00000118283.8|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr6_-_129449739_129449755	3.05583	Hoxa3	ENSMUST00000112076.9|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a	ENSMUST00000184581.3|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a
mm39_v1_chr6_-_136758716_136758804	3.03775	Hoxa3	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr5_-_65855511_65855596	2.79631	Hoxa3	ENSMUST00000201948.4|Pds5a|ENSMUSG00000029202.13|PDS5 cohesin associated factor A
mm39_v1_chr3_-_72875187_72875202	2.74743	Hoxa3	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr14_+_26722319_26722463	2.07664	Hoxa3	ENSMUST00000035433.10|Hesx1|ENSMUSG00000040726.11|homeobox gene expressed in ES cells
mm39_v1_chr3_-_86455575_86455597	1.68068	Hoxa3	ENSMUST00000077524.4|Mab21l2|ENSMUSG00000057777.5|mab-21-like 2
mm39_v1_chr7_-_44753168_44753275	1.63217	Hoxa3	ENSMUST00000211085.2|Fcgrt|ENSMUSG00000003420.9|Fc fragment of IgG receptor and transporter	ENSMUST00000210642.2|Fcgrt|ENSMUSG00000003420.9|Fc fragment of IgG receptor and transporter	ENSMUST00000003512.9|Fcgrt|ENSMUSG00000003420.9|Fc fragment of IgG receptor and transporter
mm39_v1_chr19_-_7943365_7943401	1.60986	Hoxa3	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr1_-_171854818_171854880	1.54618	Hoxa3	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr2_-_168608949_168608965	1.50711	Hoxa3	ENSMUST00000075044.10|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr16_+_35861554_35861605	1.43517	Hoxa3	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr10_-_37014859_37014933	1.4218	Hoxa3	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr11_-_99265721_99265735	1.29397	Hoxa3	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr5_+_115373895_115373895	1.21318	Hoxa3	ENSMUST00000081497.13|Pop5|ENSMUSG00000060152.15|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm39_v1_chr2_-_27365633_27365710	1.1933	Hoxa3	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr12_-_99529767_99529888	1.13227	Hoxa3	ENSMUST00000176928.3|Foxn3|ENSMUSG00000033713.13|forkhead box N3	ENSMUST00000223484.2|Foxn3|ENSMUSG00000033713.13|forkhead box N3
mm39_v1_chrX_-_74460137_74460161	1.08814	Hoxa3	ENSMUST00000033542.11|Mtcp1|ENSMUSG00000031200.17|mature T cell proliferation 1
mm39_v1_chr2_+_36120438_36120557	1.087	Hoxa3	ENSMUST00000062069.6|Ptgs1|ENSMUSG00000047250.14|prostaglandin-endoperoxide synthase 1
mm39_v1_chr9_+_40092216_40092217	0.99072	Hoxa3	ENSMUST00000218134.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000216720.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000214763.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986
mm39_v1_chr13_-_103042294_103042318	0.975996	Hoxa3	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr3_-_92441809_92441826	0.973921	Hoxa3	ENSMUST00000193521.2|2310046K23Rik|ENSMUSG00000102308.2|RIKEN cDNA 2310046K23 gene
mm39_v1_chr12_+_59060162_59060184	0.930641	Hoxa3	ENSMUST00000021379.8|Gemin2|ENSMUSG00000060121.16|gem nuclear organelle associated protein 2
mm39_v1_chr15_-_101801351_101801356	0.927841	Hoxa3	ENSMUST00000100179.2|Krt76|ENSMUSG00000075402.2|keratin 76
mm39_v1_chrX_+_16485937_16486057	0.916602	Hoxa3	ENSMUST00000026013.6|Maoa|ENSMUSG00000025037.7|monoamine oxidase A
mm39_v1_chrX_+_159551171_159551179	0.903826	Hoxa3	ENSMUST00000112368.3|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr11_-_99441687_99441693	0.893286	Hoxa3	ENSMUST00000092700.5|Krtap3-3|ENSMUSG00000069722.5|keratin associated protein 3-3
mm39_v1_chr14_+_65612788_65612842	0.8568	Hoxa3	ENSMUST00000224687.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chrX_+_159551009_159551114	0.856611	Hoxa3	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr1_-_37955569_37955576	0.805529	Hoxa3	ENSMUST00000078307.7|Lyg2|ENSMUSG00000061584.7|lysozyme G-like 2
mm39_v1_chr17_+_38104635_38104635	0.767048	Hoxa3	ENSMUST00000214770.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr2_-_168609110_168609126	0.730042	Hoxa3	ENSMUST00000029061.12|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4	ENSMUST00000103074.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr6_-_41752111_41752111	0.653298	Hoxa3	ENSMUST00000214976.3|Olfr459|ENSMUSG00000045479.8|olfactory receptor 459
mm39_v1_chr13_-_103042554_103042619	0.63834	Hoxa3	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr7_-_115637970_115637985	0.634115	Hoxa3	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr2_-_111843053_111843053	0.631942	Hoxa3	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr15_-_34356567_34356567	0.630109	Hoxa3	ENSMUST00000179647.2|9430069I07Rik|ENSMUSG00000094447.3|RIKEN cDNA 9430069I07 gene
mm39_v1_chr5_+_90708962_90709076	0.59075	Hoxa3	ENSMUST00000094615.8|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1	ENSMUST00000200765.2|Albfm1|ENSMUSG00000070690.8|albumin superfamily member 1
mm39_v1_chr5_+_138185747_138185829	0.531364	Hoxa3	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr10_-_129000620_129000620	0.528392	Hoxa3	ENSMUST00000214271.2|Olfr771|ENSMUSG00000061367.4|olfactory receptor 771
mm39_v1_chr2_+_88505972_88505982	0.406929	Hoxa3	ENSMUST00000216767.2|Olfr1193|ENSMUSG00000060827.3|olfactory receptor 1193	ENSMUST00000213893.2|Olfr1193|ENSMUSG00000060827.3|olfactory receptor 1193
mm39_v1_chr18_-_38336893_38336905	0.39221	Hoxa3	ENSMUST00000194312.2|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr14_-_36820304_36820321	0.339204	Hoxa3	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr2_+_109747984_109748003	0.312409	Hoxa3	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chr17_+_38104420_38104420	0.308679	Hoxa3	ENSMUST00000216051.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr7_-_44752508_44752519	0.281933	Hoxa3	ENSMUST00000209830.2|Fcgrt|ENSMUSG00000003420.9|Fc fragment of IgG receptor and transporter
mm39_v1_chr6_+_63232955_63233024	0.265503	Hoxa3	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr10_+_73657753_73657810	0.240053	Hoxa3	ENSMUST00000134009.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177420.7|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125006.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr4_-_14621669_14621786	0.23406	Hoxa3	ENSMUST00000143105.2|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr2_+_89642395_89642395	0.226479	Hoxa3	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr4_-_43710231_43710255	0.218616	Hoxa3	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chrX_+_110808231_110808231	0.190725	Hoxa3	ENSMUST00000207546.2|Gm45194|ENSMUSG00000109156.2|predicted gene 45194
mm39_v1_chr2_+_110551976_110551993	0.183211	Hoxa3	ENSMUST00000090332.5|Muc15|ENSMUSG00000050808.14|mucin 15
mm39_v1_chr13_-_43634695_43634823	0.170422	Hoxa3	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr11_-_100653754_100653762	0.168258	Hoxa3	ENSMUST00000107360.3|Hcrt|ENSMUSG00000045471.5|hypocretin	ENSMUST00000055083.4|Hcrt|ENSMUSG00000045471.5|hypocretin
mm39_v1_chr2_-_111820618_111820626	0.16657	Hoxa3	ENSMUST00000216948.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000214935.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000217452.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000215045.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309
mm39_v1_chr3_-_58729732_58729797	0.139562	Hoxa3	ENSMUST00000191233.4|Mindy4b-ps|ENSMUSG00000101860.5|MINDY lysine 48 deubiquitinase 4B, pseudogene
mm39_v1_chr1_-_173018204_173018207	0.119496	Hoxa3	ENSMUST00000215878.2|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406	ENSMUST00000201132.3|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406
mm39_v1_chr5_+_108842294_108842368	0.0585732	Hoxa3	ENSMUST00000013633.12|Fgfrl1|ENSMUSG00000008090.15|fibroblast growth factor receptor-like 1
mm39_v1_chr2_+_22959223_22959339	0.0528299	Hoxa3	ENSMUST00000114523.10|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr14_-_52277310_52277358	0.0526871	Hoxa3	ENSMUST00000216907.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000214071.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000216188.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr5_-_138185686_138185724	0.0448438	Hoxa3	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr3_+_159545309_159545390	0.0410137	Hoxa3	ENSMUST00000068952.10|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator	ENSMUST00000198878.2|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator
mm39_v1_chr5_-_138185438_138185499	0.0409623	Hoxa3	ENSMUST00000110937.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000139276.2|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000048698.14|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000123415.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr11_-_99979052_99979096	0.0389794	Hoxa3	ENSMUST00000107419.2|Krt32|ENSMUSG00000046095.6|keratin 32
mm39_v1_chr15_+_65682066_65682083	0.0326308	Hoxa3	ENSMUST00000211878.2|Efr3a|ENSMUSG00000015002.19|EFR3 homolog A
