mm39_v1_chr8_+_119010458_119010477	9.23992	Hoxc9	ENSMUST00000117160.2|Cdh13|ENSMUSG00000031841.20|cadherin 13
mm39_v1_chr3_+_67799510_67799565	8.561	Hoxc9	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr9_+_110782861_110782926	8.00088	Hoxc9	ENSMUST00000196834.2|Lrrc2|ENSMUSG00000032495.9|leucine rich repeat containing 2
mm39_v1_chr13_-_25454058_25454077	7.5268	Hoxc9	ENSMUST00000057866.13|Nrsn1|ENSMUSG00000048978.15|neurensin 1
mm39_v1_chr8_+_15107646_15107660	7.19621	Hoxc9	ENSMUST00000033842.4|Myom2|ENSMUSG00000031461.5|myomesin 2
mm39_v1_chr1_+_187730018_187730031	7.14506	Hoxc9	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr1_+_187730032_187730082	6.75399	Hoxc9	ENSMUST00000110938.2|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr1_-_43235914_43235928	5.57506	Hoxc9	ENSMUST00000187357.2|Fhl2|ENSMUSG00000008136.15|four and a half LIM domains 2
mm39_v1_chr10_-_67748461_67748515	5.49745	Hoxc9	ENSMUST00000064656.8|Zfp365|ENSMUSG00000037855.16|zinc finger protein 365
mm39_v1_chr10_+_69761784_69761963	5.40918	Hoxc9	ENSMUST00000181974.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000182795.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000182437.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr1_+_11484313_11484370	5.40784	Hoxc9	ENSMUST00000171690.9|A830018L16Rik|ENSMUSG00000057715.14|RIKEN cDNA A830018L16 gene	ENSMUST00000048613.14|A830018L16Rik|ENSMUSG00000057715.14|RIKEN cDNA A830018L16 gene
mm39_v1_chr19_-_10857734_10857776	5.12425	Hoxc9	ENSMUST00000133303.8|Tmem109|ENSMUSG00000034659.15|transmembrane protein 109
mm39_v1_chr1_+_11484489_11484557	5.07547	Hoxc9	ENSMUST00000135014.8|A830018L16Rik|ENSMUSG00000057715.14|RIKEN cDNA A830018L16 gene
mm39_v1_chr4_+_33924632_33924651	4.80004	Hoxc9	ENSMUST00000057188.7|Cnr1|ENSMUSG00000044288.7|cannabinoid receptor 1 (brain)
mm39_v1_chr11_-_97913420_97913496	4.63727	Hoxc9	ENSMUST00000103144.10|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000017552.13|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000092736.11|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000107562.2|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit
mm39_v1_chrX_+_55655111_55655177	4.56985	Hoxc9	ENSMUST00000144068.8|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000077741.12|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000114784.4|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm39_v1_chr2_+_3514071_3514112	4.38905	Hoxc9	ENSMUST00000036350.3|Cdnf|ENSMUSG00000039496.9|cerebral dopamine neurotrophic factor
mm39_v1_chr1_-_135934080_135934080	4.29016	Hoxc9	ENSMUST00000166193.9|Igfn1|ENSMUSG00000051985.13|immunoglobulin-like and fibronectin type III domain containing 1
mm39_v1_chr5_-_132570710_132570860	4.11277	Hoxc9	ENSMUST00000182974.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr19_+_22425534_22425561	3.99899	Hoxc9	ENSMUST00000235522.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000236372.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000238066.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000235780.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000236804.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr12_-_46767619_46767642	3.98521	Hoxc9	ENSMUST00000219886.2|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr17_-_49871291_49871371	3.98488	Hoxc9	ENSMUST00000224595.2|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2	ENSMUST00000057610.8|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2
mm39_v1_chr19_+_24853039_24853057	3.75059	Hoxc9	ENSMUST00000073080.7|Gm10053|ENSMUSG00000058927.7|predicted gene 10053
mm39_v1_chrX_-_102230225_102230277	3.73879	Hoxc9	ENSMUST00000121720.2|Nap1l2|ENSMUSG00000082229.2|nucleosome assembly protein 1-like 2
mm39_v1_chr4_-_91264670_91264714	3.64878	Hoxc9	ENSMUST00000107109.9|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107111.9|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107120.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr18_+_37822865_37822914	3.29323	Hoxc9	ENSMUST00000195112.2|Pcdhgb2|ENSMUSG00000102748.2|protocadherin gamma subfamily B, 2
mm39_v1_chr12_-_8550003_8550017	3.27593	Hoxc9	ENSMUST00000067384.6|Rhob|ENSMUSG00000054364.6|ras homolog family member B
mm39_v1_chr16_-_37205277_37205293	3.2449	Hoxc9	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr14_+_80237691_80237749	3.2132	Hoxc9	ENSMUST00000228749.2|Olfm4|ENSMUSG00000022026.8|olfactomedin 4	ENSMUST00000088735.4|Olfm4|ENSMUSG00000022026.8|olfactomedin 4
mm39_v1_chr10_-_88440869_88440914	3.18157	Hoxc9	ENSMUST00000119185.8|Mybpc1|ENSMUSG00000020061.19|myosin binding protein C, slow-type	ENSMUST00000238199.2|Mybpc1|ENSMUSG00000020061.19|myosin binding protein C, slow-type
mm39_v1_chr4_+_100633860_100633889	3.1489	Hoxc9	ENSMUST00000030257.15|Cachd1|ENSMUSG00000028532.15|cache domain containing 1	ENSMUST00000097955.3|Cachd1|ENSMUSG00000028532.15|cache domain containing 1
mm39_v1_chr8_-_106198112_106198158	3.14033	Hoxc9	ENSMUST00000014990.13|Tppp3|ENSMUSG00000014846.13|tubulin polymerization-promoting protein family member 3
mm39_v1_chr11_+_73051228_73051411	3.06705	Hoxc9	ENSMUST00000006104.10|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000135202.8|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000136894.3|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5
mm39_v1_chr7_+_130633776_130633806	3.03354	Hoxc9	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chr13_-_78345932_78346049	2.87493	Hoxc9	ENSMUST00000127137.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr16_-_37205302_37205341	2.82292	Hoxc9	ENSMUST00000114781.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114780.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr1_+_58249556_58249616	2.77988	Hoxc9	ENSMUST00000040442.6|Aox4|ENSMUSG00000038242.13|aldehyde oxidase 4
mm39_v1_chr4_-_91264727_91264740	2.77477	Hoxc9	ENSMUST00000107124.10|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr1_+_66360865_66360878	2.61698	Hoxc9	ENSMUST00000114013.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr18_+_65715156_65715346	2.54669	Hoxc9	ENSMUST00000237553.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000237712.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000182684.8|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr10_-_88440996_88441016	2.43298	Hoxc9	ENSMUST00000121629.8|Mybpc1|ENSMUSG00000020061.19|myosin binding protein C, slow-type
mm39_v1_chr15_+_8997480_8997495	2.35707	Hoxc9	ENSMUST00000227191.3|Ranbp3l|ENSMUSG00000048424.19|RAN binding protein 3-like
mm39_v1_chr8_-_23295603_23295666	2.27477	Hoxc9	ENSMUST00000163739.3|Ap3m2|ENSMUSG00000031539.7|adaptor-related protein complex 3, mu 2 subunit	ENSMUST00000210656.2|Ap3m2|ENSMUSG00000031539.7|adaptor-related protein complex 3, mu 2 subunit
mm39_v1_chr6_-_55109960_55109999	2.26149	Hoxc9	ENSMUST00000003568.15|Crhr2|ENSMUSG00000003476.17|corticotropin releasing hormone receptor 2
mm39_v1_chr3_+_92864693_92864697	2.20169	Hoxc9	ENSMUST00000059053.11|Lce3d|ENSMUSG00000043472.11|late cornified envelope 3D
mm39_v1_chr12_+_25024913_25024992	2.17912	Hoxc9	ENSMUST00000066652.7|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000220459.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000222941.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220
mm39_v1_chr18_-_32170012_32170072	2.14825	Hoxc9	ENSMUST00000134663.2|Myo7b|ENSMUSG00000024388.12|myosin VIIB
mm39_v1_chr11_-_100084072_100084082	2.14416	Hoxc9	ENSMUST00000059707.3|Krt9|ENSMUSG00000051617.4|keratin 9
mm39_v1_chr11_+_69016722_69016722	2.12812	Hoxc9	ENSMUST00000021268.9|Aloxe3|ENSMUSG00000020892.11|arachidonate lipoxygenase 3
mm39_v1_chr18_+_63841756_63841801	2.12134	Hoxc9	ENSMUST00000072726.7|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7	ENSMUST00000235648.2|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7	ENSMUST00000236879.2|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7
mm39_v1_chr8_-_65489834_65489988	1.93694	Hoxc9	ENSMUST00000142822.4|Apela|ENSMUSG00000079042.11|apelin receptor early endogenous ligand
mm39_v1_chr18_+_65715351_65715398	1.88078	Hoxc9	ENSMUST00000235669.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000183319.8|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000236523.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000237886.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr13_-_96607722_96607775	1.84357	Hoxc9	ENSMUST00000055607.13|Ankdd1b|ENSMUSG00000047117.14|ankyrin repeat and death domain containing 1B
mm39_v1_chr2_-_111320501_111320501	1.80928	Hoxc9	ENSMUST00000099616.2|Olfr1290|ENSMUSG00000095809.4|olfactory receptor 1290
mm39_v1_chr10_+_119655294_119655430	1.65685	Hoxc9	ENSMUST00000105262.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000147454.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000138410.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144825.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000148954.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144959.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr9_+_121539395_121539489	1.64667	Hoxc9	ENSMUST00000035113.11|Ss18l2|ENSMUSG00000032526.12|SS18, nBAF chromatin remodeling complex subunit like 2	ENSMUST00000215966.2|Ss18l2|ENSMUSG00000032526.12|SS18, nBAF chromatin remodeling complex subunit like 2	ENSMUST00000215833.2|Ss18l2|ENSMUSG00000032526.12|SS18, nBAF chromatin remodeling complex subunit like 2	ENSMUST00000215104.2|Ss18l2|ENSMUSG00000032526.12|SS18, nBAF chromatin remodeling complex subunit like 2
mm39_v1_chr15_+_82230155_82230304	1.55046	Hoxc9	ENSMUST00000023086.15|Smdt1|ENSMUSG00000022452.17|single-pass membrane protein with aspartate rich tail 1
mm39_v1_chr17_+_64203017_64203059	1.5276	Hoxc9	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr18_+_65715460_65715684	1.51934	Hoxc9	ENSMUST00000169679.8|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000183326.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr12_-_15866763_15866923	1.5098	Hoxc9	ENSMUST00000020922.8|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221215.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221518.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2
mm39_v1_chrX_-_18327610_18327642	1.46999	Hoxc9	ENSMUST00000044188.5|Dipk2b|ENSMUSG00000037358.7|divergent protein kinase domain 2B
mm39_v1_chr19_+_22425565_22425596	1.46697	Hoxc9	ENSMUST00000037901.14|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr11_-_101785181_101785200	1.46639	Hoxc9	ENSMUST00000057054.8|Meox1|ENSMUSG00000001493.10|mesenchyme homeobox 1
mm39_v1_chr17_+_24645615_24645678	1.4009	Hoxc9	ENSMUST00000234304.2|Eci1|ENSMUSG00000024132.7|enoyl-Coenzyme A delta isomerase 1	ENSMUST00000024946.7|Eci1|ENSMUSG00000024132.7|enoyl-Coenzyme A delta isomerase 1	ENSMUST00000234150.2|Eci1|ENSMUSG00000024132.7|enoyl-Coenzyme A delta isomerase 1
mm39_v1_chr5_+_67417908_67418054	1.38572	Hoxc9	ENSMUST00000037918.12|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000162543.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000161233.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000160352.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33
mm39_v1_chrX_-_142716200_142716307	1.37515	Hoxc9	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chrX_-_140257030_140257086	1.29552	Hoxc9	ENSMUST00000101205.3|Col4a6|ENSMUSG00000031273.17|collagen, type IV, alpha 6
mm39_v1_chr2_+_36958319_36958319	1.25876	Hoxc9	ENSMUST00000120704.2|Olfr360|ENSMUSG00000083361.5|olfactory receptor 360
mm39_v1_chr9_+_53678801_53678830	1.25415	Hoxc9	ENSMUST00000048670.10|Slc35f2|ENSMUSG00000042195.10|solute carrier family 35, member F2
mm39_v1_chr3_+_128993568_128993591	1.23133	Hoxc9	ENSMUST00000029657.16|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2	ENSMUST00000106382.11|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2
mm39_v1_chr2_+_174852034_174852112	1.17715	Hoxc9	ENSMUST00000109069.8|Gm14444|ENSMUSG00000078906.10|predicted gene 14444	ENSMUST00000109070.3|Gm14444|ENSMUSG00000078906.10|predicted gene 14444
mm39_v1_chr11_+_98555167_98555182	1.10139	Hoxc9	ENSMUST00000017348.3|Gsdma|ENSMUSG00000017204.5|gasdermin A
mm39_v1_chr2_-_34261121_34261265	1.08267	Hoxc9	ENSMUST00000127353.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000141653.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr11_+_85243970_85244045	1.02327	Hoxc9	ENSMUST00000108056.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000108061.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000108062.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000138423.8|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000092821.10|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3	ENSMUST00000074875.11|Bcas3|ENSMUSG00000059439.16|breast carcinoma amplified sequence 3
mm39_v1_chr7_+_51537645_51537688	0.998422	Hoxc9	ENSMUST00000208711.2|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr16_+_27126239_27126400	0.970549	Hoxc9	ENSMUST00000066852.9|Ostn|ENSMUSG00000052276.9|osteocrin
mm39_v1_chr1_-_63808426_63808426	0.929376	Hoxc9	ENSMUST00000027102.2|4933402D24Rik|ENSMUSG00000025961.2|RIKEN cDNA 4933402D24 gene
mm39_v1_chr13_+_23433408_23433408	0.874669	Hoxc9	ENSMUST00000091719.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223
mm39_v1_chrX_+_21350783_21350875	0.859994	Hoxc9	ENSMUST00000089188.9|Agtr2|ENSMUSG00000068122.11|angiotensin II receptor, type 2
mm39_v1_chr2_+_125876883_125876903	0.859089	Hoxc9	ENSMUST00000110442.2|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr2_+_74552322_74552418	0.840617	Hoxc9	ENSMUST00000047904.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chr13_-_96607619_96607706	0.838346	Hoxc9	ENSMUST00000239026.2|Ankdd1b|ENSMUSG00000047117.14|ankyrin repeat and death domain containing 1B	ENSMUST00000181613.3|Ankdd1b|ENSMUSG00000047117.14|ankyrin repeat and death domain containing 1B
mm39_v1_chr3_-_33898405_33898472	0.837912	Hoxc9	ENSMUST00000029222.8|Ccdc39|ENSMUSG00000027676.12|coiled-coil domain containing 39
mm39_v1_chr2_-_177269992_177270003	0.830692	Hoxc9	ENSMUST00000108945.8|Gm14406|ENSMUSG00000078865.9|predicted gene 14406	ENSMUST00000108943.2|Gm14406|ENSMUSG00000078865.9|predicted gene 14406
mm39_v1_chr11_+_67586140_67586152	0.823389	Hoxc9	ENSMUST00000021290.2|Rcvrn|ENSMUSG00000020907.2|recoverin
mm39_v1_chr13_+_94219934_94220019	0.757706	Hoxc9	ENSMUST00000156071.2|Lhfpl2|ENSMUSG00000045312.13|lipoma HMGIC fusion partner-like 2
mm39_v1_chr9_+_62765362_62765420	0.731738	Hoxc9	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr3_-_110050312_110050326	0.731498	Hoxc9	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr6_-_128332760_128332788	0.6921	Hoxc9	ENSMUST00000133134.3|Tulp3|ENSMUSG00000001521.13|tubby-like protein 3	ENSMUST00000157005.3|Tulp3|ENSMUSG00000001521.13|tubby-like protein 3
mm39_v1_chr10_-_13199971_13200069	0.684469	Hoxc9	ENSMUST00000105543.9|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr10_+_52267702_52267706	0.643967	Hoxc9	ENSMUST00000067085.7|Nepn|ENSMUSG00000038624.14|nephrocan
mm39_v1_chr15_+_37425798_37425798	0.624903	Hoxc9	ENSMUST00000022897.2|4930447A16Rik|ENSMUSG00000022288.2|RIKEN cDNA 4930447A16 gene
mm39_v1_chr7_-_139162706_139162724	0.613249	Hoxc9	ENSMUST00000106095.3|Nkx6-2|ENSMUSG00000041309.18|NK6 homeobox 2
mm39_v1_chr3_+_128993527_128993563	0.558043	Hoxc9	ENSMUST00000174661.9|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2
mm39_v1_chr2_-_42543069_42543088	0.392186	Hoxc9	ENSMUST00000203080.3|Lrp1b|ENSMUSG00000049252.18|low density lipoprotein-related protein 1B
mm39_v1_chr7_-_30312246_30312305	0.325315	Hoxc9	ENSMUST00000006476.6|Upk1a|ENSMUSG00000006313.6|uroplakin 1A
mm39_v1_chr11_-_94133527_94133539	0.322953	Hoxc9	ENSMUST00000061469.4|Wfikkn2|ENSMUSG00000044177.5|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm39_v1_chr17_-_41225241_41225241	0.286054	Hoxc9	ENSMUST00000166343.3|Glyatl3|ENSMUSG00000091043.3|glycine-N-acyltransferase-like 3
mm39_v1_chr10_+_43400074_43400110	0.263786	Hoxc9	ENSMUST00000057649.8|Gm9803|ENSMUSG00000045886.8|predicted gene 9803	ENSMUST00000216543.2|Gm9803|ENSMUSG00000045886.8|predicted gene 9803
mm39_v1_chr4_+_151081538_151081554	0.229731	Hoxc9	ENSMUST00000030803.2|Uts2|ENSMUSG00000028963.2|urotensin 2
mm39_v1_chr7_+_99384352_99384352	0.176048	Hoxc9	ENSMUST00000098264.2|Olfr520|ENSMUSG00000073998.3|olfactory receptor 520
mm39_v1_chr5_+_102916637_102916681	0.130547	Hoxc9	ENSMUST00000112852.8|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr10_+_128247492_128247546	0.126677	Hoxc9	ENSMUST00000171342.3|Rnf41|ENSMUSG00000025373.15|ring finger protein 41
mm39_v1_chr7_-_115637970_115637985	0.0558003	Hoxc9	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chrX_-_142716085_142716149	0.0554094	Hoxc9	ENSMUST00000087313.10|Dcx|ENSMUSG00000031285.15|doublecortin
