mm39_v1_chr6_-_69282389_69282389	10.7704	Hoxd1	ENSMUST00000103350.3|Igkv4-68|ENSMUSG00000076549.3|immunoglobulin kappa variable 4-68
mm39_v1_chr7_+_45271229_45271249	8.51821	Hoxd1	ENSMUST00000033100.5|Izumo1|ENSMUSG00000064158.7|izumo sperm-egg fusion 1
mm39_v1_chr2_-_32277773_32277809	8.49935	Hoxd1	ENSMUST00000050785.14|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr2_-_32278245_32278268	7.49207	Hoxd1	ENSMUST00000192241.2|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr10_-_75946790_75946796	7.00176	Hoxd1	ENSMUST00000120757.2|Slc5a4b|ENSMUSG00000020226.10|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm39_v1_chr16_+_45044678_45044710	6.52712	Hoxd1	ENSMUST00000102802.10|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated	ENSMUST00000063654.6|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated
mm39_v1_chr12_-_114487525_114487579	6.27767	Hoxd1	ENSMUST00000103495.3|Ighv10-3|ENSMUSG00000095700.3|immunoglobulin heavy variable V10-3
mm39_v1_chr6_-_69584812_69584840	5.63542	Hoxd1	ENSMUST00000103359.3|Igkv4-55|ENSMUSG00000096833.3|immunoglobulin kappa variable 4-55
mm39_v1_chr6_-_69415741_69415741	5.59657	Hoxd1	ENSMUST00000103354.3|Igkv4-59|ENSMUSG00000094006.3|immunoglobulin kappa variable 4-59
mm39_v1_chr3_-_72875187_72875202	5.50224	Hoxd1	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr12_-_114443071_114443116	5.46976	Hoxd1	ENSMUST00000103492.2|Ighv10-1|ENSMUSG00000095981.2|immunoglobulin heavy variable 10-1
mm39_v1_chr6_-_124756645_124756698	5.45362	Hoxd1	ENSMUST00000147669.2|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000128697.8|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000032218.10|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000112475.9|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23
mm39_v1_chr5_+_88127290_88127317	4.97477	Hoxd1	ENSMUST00000008051.5|Cabs1|ENSMUSG00000007907.5|calcium binding protein, spermatid specific 1
mm39_v1_chr7_-_103778992_103779033	4.92119	Hoxd1	ENSMUST00000053743.6|Ubqln5|ENSMUSG00000055643.5|ubiquilin 5
mm39_v1_chr7_-_126574959_126575095	4.86585	Hoxd1	ENSMUST00000206296.2|Cdiptos|ENSMUSG00000097075.4|CDIP transferase, opposite strand	ENSMUST00000205437.3|Cdiptos|ENSMUSG00000097075.4|CDIP transferase, opposite strand
mm39_v1_chr9_+_53678801_53678830	4.81748	Hoxd1	ENSMUST00000048670.10|Slc35f2|ENSMUSG00000042195.10|solute carrier family 35, member F2
mm39_v1_chr6_-_69355456_69355511	4.69541	Hoxd1	ENSMUST00000196595.2|Igkv4-63|ENSMUSG00000076550.4|immunoglobulin kappa variable 4-63
mm39_v1_chr3_-_15640045_15640125	4.4688	Hoxd1	ENSMUST00000192382.6|Sirpb1b|ENSMUSG00000095028.7|signal-regulatory protein beta 1B	ENSMUST00000195778.3|Sirpb1b|ENSMUSG00000095028.7|signal-regulatory protein beta 1B	ENSMUST00000091319.7|Sirpb1b|ENSMUSG00000095028.7|signal-regulatory protein beta 1B
mm39_v1_chr6_-_69553484_69553506	4.40675	Hoxd1	ENSMUST00000103357.4|Igkv4-57|ENSMUSG00000076556.4|immunoglobulin kappa variable 4-57
mm39_v1_chr3_+_18002574_18002614	4.40057	Hoxd1	ENSMUST00000029080.5|Cypt12|ENSMUSG00000027564.5|cysteine-rich perinuclear theca 12
mm39_v1_chr3_-_15902583_15902692	4.21767	Hoxd1	ENSMUST00000108354.8|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108349.2|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108352.9|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108350.8|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000050623.11|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C
mm39_v1_chr12_-_113790741_113790824	4.13735	Hoxd1	ENSMUST00000103457.3|Ighv5-15|ENSMUSG00000094134.3|immunoglobulin heavy variable 5-15	ENSMUST00000192877.2|Ighv5-15|ENSMUSG00000094134.3|immunoglobulin heavy variable 5-15
mm39_v1_chr6_+_78347636_78347652	4.10163	Hoxd1	ENSMUST00000204873.3|Reg3b|ENSMUSG00000071356.8|regenerating islet-derived 3 beta
mm39_v1_chr12_-_55061117_55061138	3.95467	Hoxd1	ENSMUST00000172875.8|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr5_+_29400981_29401030	3.89311	Hoxd1	ENSMUST00000160888.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000159272.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000001247.12|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000161398.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000160246.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32
mm39_v1_chr9_+_5298669_5298701	3.84627	Hoxd1	ENSMUST00000238505.2|Casp1|ENSMUSG00000025888.7|caspase 1
mm39_v1_chr7_-_24423715_24423715	3.78381	Hoxd1	ENSMUST00000081657.6|Lypd11|ENSMUSG00000058717.9|Ly6/PLAUR domain containing 11
mm39_v1_chr6_-_69204417_69204417	3.77225	Hoxd1	ENSMUST00000103346.3|Igkv4-72|ENSMUSG00000076545.3|immunoglobulin kappa chain variable 4-72
mm39_v1_chr10_+_87041814_87041860	3.68405	Hoxd1	ENSMUST00000189775.2|1700113H08Rik|ENSMUSG00000047129.12|RIKEN cDNA 1700113H08 gene
mm39_v1_chr3_-_15491482_15491580	3.64264	Hoxd1	ENSMUST00000099201.9|Sirpb1a|ENSMUSG00000095788.7|signal-regulatory protein beta 1A	ENSMUST00000194144.3|Sirpb1a|ENSMUSG00000095788.7|signal-regulatory protein beta 1A	ENSMUST00000192700.3|Sirpb1a|ENSMUSG00000095788.7|signal-regulatory protein beta 1A
mm39_v1_chr6_-_69394425_69394440	3.56204	Hoxd1	ENSMUST00000199160.2|Igkv4-61|ENSMUSG00000076552.4|immunoglobulin kappa chain variable 4-61
mm39_v1_chr6_-_40496403_40496442	3.54063	Hoxd1	ENSMUST00000031967.6|Prss37|ENSMUSG00000029909.7|protease, serine 37
mm39_v1_chr5_-_140986312_140986406	3.51672	Hoxd1	ENSMUST00000085786.7|Card11|ENSMUSG00000036526.9|caspase recruitment domain family, member 11
mm39_v1_chr6_-_68994064_68994119	3.49435	Hoxd1	ENSMUST00000103341.4|Igkv4-80|ENSMUSG00000076540.4|immunoglobulin kappa variable 4-80
mm39_v1_chr8_+_21382681_21382685	3.48437	Hoxd1	ENSMUST00000098908.4|Defb33|ENSMUSG00000074454.4|defensin beta 33
mm39_v1_chr6_+_78347844_78347881	3.41974	Hoxd1	ENSMUST00000096904.6|Reg3b|ENSMUSG00000071356.8|regenerating islet-derived 3 beta	ENSMUST00000203266.2|Reg3b|ENSMUSG00000071356.8|regenerating islet-derived 3 beta
mm39_v1_chr17_-_45970238_45970262	3.40983	Hoxd1	ENSMUST00000120717.8|Capn11|ENSMUSG00000058626.17|calpain 11
mm39_v1_chr6_-_69245427_69245427	3.32866	Hoxd1	ENSMUST00000103348.3|Igkv4-70|ENSMUSG00000076547.3|immunoglobulin kappa chain variable 4-70
mm39_v1_chr6_+_68279392_68279411	3.30992	Hoxd1	ENSMUST00000103322.3|Igkv2-109|ENSMUSG00000105606.2|immunoglobulin kappa variable 2-109
mm39_v1_chr19_+_8779903_8779922	3.24487	Hoxd1	ENSMUST00000172175.3|Zbtb3|ENSMUSG00000071661.8|zinc finger and BTB domain containing 3
mm39_v1_chr3_-_75072319_75072362	3.22543	Hoxd1	ENSMUST00000124618.2|Zbbx|ENSMUSG00000034151.14|zinc finger, B-box domain containing
mm39_v1_chr5_+_107645626_107645668	3.1889	Hoxd1	ENSMUST00000152474.8|Btbd8|ENSMUSG00000111375.5|BTB (POZ) domain containing 8	ENSMUST00000060553.8|Btbd8|ENSMUSG00000111375.5|BTB (POZ) domain containing 8
mm39_v1_chr3_+_104688363_104688443	3.16652	Hoxd1	ENSMUST00000002298.7|Ppm1j|ENSMUSG00000002228.8|protein phosphatase 1J
mm39_v1_chr1_-_171854818_171854880	3.09997	Hoxd1	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr6_-_69162381_69162400	3.09132	Hoxd1	ENSMUST00000103344.3|Igkv4-74|ENSMUSG00000076543.3|immunoglobulin kappa variable 4-74
mm39_v1_chr1_-_28819331_28819333	3.07978	Hoxd1	ENSMUST00000059937.5|Gm597|ENSMUSG00000048411.5|predicted gene 597
mm39_v1_chr12_+_72488625_72488640	3.03145	Hoxd1	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr10_+_97482946_97482975	3.00245	Hoxd1	ENSMUST00000105285.4|Epyc|ENSMUSG00000019936.11|epiphycan
mm39_v1_chr17_-_37399343_37399391	2.98902	Hoxd1	ENSMUST00000207101.2|Olfr90|ENSMUSG00000056600.5|olfactory receptor 90	ENSMUST00000217397.2|Olfr90|ENSMUSG00000056600.5|olfactory receptor 90	ENSMUST00000215195.2|Olfr90|ENSMUSG00000056600.5|olfactory receptor 90	ENSMUST00000216488.2|Olfr90|ENSMUSG00000056600.5|olfactory receptor 90
mm39_v1_chr10_-_53252210_53252261	2.87393	Hoxd1	ENSMUST00000095691.7|Cep85l|ENSMUSG00000038594.10|centrosomal protein 85-like
mm39_v1_chr6_+_34006356_34006401	2.85517	Hoxd1	ENSMUST00000228187.2|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing	ENSMUST00000070189.10|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing	ENSMUST00000101564.9|Lrguk|ENSMUSG00000056215.14|leucine-rich repeats and guanylate kinase domain containing
mm39_v1_chr9_+_40092216_40092217	2.81884	Hoxd1	ENSMUST00000218134.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000216720.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000214763.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986
mm39_v1_chr1_-_162913210_162913242	2.80944	Hoxd1	ENSMUST00000096608.5|Mroh9|ENSMUSG00000071890.5|maestro heat-like repeat family member 9
mm39_v1_chr2_-_58050494_58050507	2.76087	Hoxd1	ENSMUST00000028175.7|Cytip|ENSMUSG00000026832.13|cytohesin 1 interacting protein
mm39_v1_chr10_+_57527073_57527081	2.74607	Hoxd1	ENSMUST00000066028.13|Pkib|ENSMUSG00000019876.16|protein kinase inhibitor beta, cAMP dependent, testis specific
mm39_v1_chr6_-_130106861_130106861	2.64173	Hoxd1	ENSMUST00000014476.6|Klra8|ENSMUSG00000089727.3|killer cell lectin-like receptor, subfamily A, member 8
mm39_v1_chr8_+_84728123_84728206	2.62723	Hoxd1	ENSMUST00000060357.15|1700067K01Rik|ENSMUSG00000046408.16|RIKEN cDNA 1700067K01 gene	ENSMUST00000239176.2|1700067K01Rik|ENSMUSG00000046408.16|RIKEN cDNA 1700067K01 gene
mm39_v1_chr8_-_79975199_79975209	2.59129	Hoxd1	ENSMUST00000034109.6|1700011L22Rik|ENSMUSG00000031682.6|RIKEN cDNA 1700011L22 gene
mm39_v1_chr3_-_54962458_54962476	2.56742	Hoxd1	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chrX_+_111404963_111404978	2.55681	Hoxd1	ENSMUST00000026602.9|2010106E10Rik|ENSMUSG00000025528.11|RIKEN cDNA 2010106E10 gene	ENSMUST00000113412.3|2010106E10Rik|ENSMUSG00000025528.11|RIKEN cDNA 2010106E10 gene
mm39_v1_chr2_+_118877594_118877605	2.51193	Hoxd1	ENSMUST00000152380.8|Knl1|ENSMUSG00000027326.14|kinetochore scaffold 1	ENSMUST00000099542.9|Knl1|ENSMUSG00000027326.14|kinetochore scaffold 1
mm39_v1_chr4_+_147216495_147216495	2.49553	Hoxd1	ENSMUST00000084149.10|Zfp991|ENSMUSG00000067916.10|zinc finger protein 991
mm39_v1_chr1_+_139382485_139382608	2.48988	Hoxd1	ENSMUST00000200083.5|Aspm|ENSMUSG00000033952.15|abnormal spindle microtubule assembly	ENSMUST00000053364.12|Aspm|ENSMUSG00000033952.15|abnormal spindle microtubule assembly
mm39_v1_chr19_-_11261177_11261249	2.47196	Hoxd1	ENSMUST00000186937.7|Ms4a5|ENSMUSG00000054523.14|membrane-spanning 4-domains, subfamily A, member 5	ENSMUST00000067673.13|Ms4a5|ENSMUSG00000054523.14|membrane-spanning 4-domains, subfamily A, member 5
mm39_v1_chr4_+_146695418_146695418	2.41306	Hoxd1	ENSMUST00000130825.8|Zfp993|ENSMUSG00000063245.12|zinc finger protein 993
mm39_v1_chr7_+_130375799_130375915	2.39246	Hoxd1	ENSMUST00000048453.7|Btbd16|ENSMUSG00000040298.7|BTB (POZ) domain containing 16	ENSMUST00000208593.2|Btbd16|ENSMUSG00000040298.7|BTB (POZ) domain containing 16
mm39_v1_chr10_+_57527084_57527110	2.39026	Hoxd1	ENSMUST00000175852.2|Pkib|ENSMUSG00000019876.16|protein kinase inhibitor beta, cAMP dependent, testis specific
mm39_v1_chr8_-_46542730_46542730	2.3854	Hoxd1	ENSMUST00000144244.2|Snx25|ENSMUSG00000038291.17|sorting nexin 25
mm39_v1_chrX_+_56257374_56257514	2.38414	Hoxd1	ENSMUST00000033466.2|Cd40lg|ENSMUSG00000031132.2|CD40 ligand
mm39_v1_chrX_+_110154017_110154030	2.36326	Hoxd1	ENSMUST00000210720.3|Cylc1|ENSMUSG00000073001.5|cylicin, basic protein of sperm head cytoskeleton 1
mm39_v1_chr4_+_52596266_52596278	2.35521	Hoxd1	ENSMUST00000029995.6|Toporsl|ENSMUSG00000028314.7|topoisomerase I binding, arginine/serine-rich like
mm39_v1_chr15_-_9529898_9529932	2.34234	Hoxd1	ENSMUST00000228782.2|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor	ENSMUST00000003981.6|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor
mm39_v1_chrX_-_56384089_56384140	2.33899	Hoxd1	ENSMUST00000033468.11|Arhgef6|ENSMUSG00000031133.13|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm39_v1_chr6_-_69020489_69020543	2.33225	Hoxd1	ENSMUST00000103342.4|Igkv4-79|ENSMUSG00000076541.4|immunoglobulin kappa variable 4-79
mm39_v1_chr2_+_118877610_118877640	2.33121	Hoxd1	ENSMUST00000153300.8|Knl1|ENSMUSG00000027326.14|kinetochore scaffold 1	ENSMUST00000028799.12|Knl1|ENSMUSG00000027326.14|kinetochore scaffold 1
mm39_v1_chr6_-_68887922_68887943	2.32496	Hoxd1	ENSMUST00000103337.3|Igkv4-86|ENSMUSG00000076536.4|immunoglobulin kappa variable 4-86
mm39_v1_chr18_+_52748978_52749068	2.3232	Hoxd1	ENSMUST00000072666.4|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474	ENSMUST00000209270.2|Zfp474|ENSMUSG00000046886.7|zinc finger protein 474
mm39_v1_chr4_+_145311759_145311791	2.31733	Hoxd1	ENSMUST00000119718.8|Zfp268|ENSMUSG00000078502.11|zinc finger protein 268
mm39_v1_chr3_-_16060545_16060601	2.24975	Hoxd1	ENSMUST00000194367.6|Gm5150|ENSMUSG00000078780.8|predicted gene 5150
mm39_v1_chr3_+_40755211_40755224	2.22423	Hoxd1	ENSMUST00000204473.2|Plk4|ENSMUSG00000025758.11|polo like kinase 4
mm39_v1_chr2_-_172212426_172212462	2.21936	Hoxd1	ENSMUST00000109139.8|Aurka|ENSMUSG00000027496.16|aurora kinase A	ENSMUST00000028997.8|Aurka|ENSMUSG00000027496.16|aurora kinase A	ENSMUST00000109140.10|Aurka|ENSMUSG00000027496.16|aurora kinase A
mm39_v1_chr4_-_132072988_132073020	2.21886	Hoxd1	ENSMUST00000030726.13|Rcc1|ENSMUSG00000028896.14|regulator of chromosome condensation 1
mm39_v1_chr8_-_86107593_86107613	2.19382	Hoxd1	ENSMUST00000122452.8|Mylk3|ENSMUSG00000031698.15|myosin light chain kinase 3
mm39_v1_chr4_+_140427799_140427855	2.10192	Hoxd1	ENSMUST00000071169.9|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2
mm39_v1_chr3_-_129834788_129834855	2.04844	Hoxd1	ENSMUST00000168644.3|Sec24b|ENSMUSG00000001052.16|Sec24 related gene family, member B (S. cerevisiae)
mm39_v1_chr4_-_132073048_132073058	1.9854	Hoxd1	ENSMUST00000084250.11|Rcc1|ENSMUSG00000028896.14|regulator of chromosome condensation 1
mm39_v1_chr5_-_62923463_62923615	1.95238	Hoxd1	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr9_-_20871081_20871184	1.94589	Hoxd1	ENSMUST00000177754.9|Dnmt1|ENSMUSG00000004099.17|DNA methyltransferase (cytosine-5) 1
mm39_v1_chr3_-_16060491_16060500	1.93952	Hoxd1	ENSMUST00000108347.3|Gm5150|ENSMUSG00000078780.8|predicted gene 5150
mm39_v1_chr6_-_69037208_69037208	1.9126	Hoxd1	ENSMUST00000103343.4|Igkv4-78|ENSMUSG00000094315.3|immunoglobulin kappa variable 4-78
mm39_v1_chrX_-_159689993_159690048	1.88959	Hoxd1	ENSMUST00000069417.6|Gja6|ENSMUSG00000055691.6|gap junction protein, alpha 6
mm39_v1_chr14_-_104760051_104760143	1.88177	Hoxd1	ENSMUST00000022716.4|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1	ENSMUST00000228448.2|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1	ENSMUST00000227640.2|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1
mm39_v1_chr14_-_70666513_70666545	1.85129	Hoxd1	ENSMUST00000226426.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2	ENSMUST00000048129.6|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
mm39_v1_chrX_+_106299484_106299671	1.84898	Hoxd1	ENSMUST00000101294.9|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174	ENSMUST00000118820.8|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174	ENSMUST00000120971.8|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174
mm39_v1_chr3_-_86827664_86827720	1.82054	Hoxd1	ENSMUST00000194452.2|Dclk2|ENSMUSG00000028078.15|doublecortin-like kinase 2	ENSMUST00000191752.6|Dclk2|ENSMUSG00000028078.15|doublecortin-like kinase 2
mm39_v1_chr10_-_111996226_111996235	1.81896	Hoxd1	ENSMUST00000220085.2|Glipr1l3|ENSMUSG00000112611.2|GLI pathogenesis-related 1 like 3
mm39_v1_chr7_+_101545547_101545638	1.81546	Hoxd1	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr1_-_33853598_33853655	1.79529	Hoxd1	ENSMUST00000019861.13|Zfp451|ENSMUSG00000042197.14|zinc finger protein 451	ENSMUST00000044455.8|Zfp451|ENSMUSG00000042197.14|zinc finger protein 451
mm39_v1_chr19_-_32173824_32173842	1.7948	Hoxd1	ENSMUST00000151822.2|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr6_-_130170075_130170075	1.7293	Hoxd1	ENSMUST00000112032.8|Klra9|ENSMUSG00000033024.17|killer cell lectin-like receptor subfamily A, member 9	ENSMUST00000071554.3|Klra9|ENSMUSG00000033024.17|killer cell lectin-like receptor subfamily A, member 9
mm39_v1_chr4_+_145311722_145311736	1.72716	Hoxd1	ENSMUST00000105739.8|Zfp268|ENSMUSG00000078502.11|zinc finger protein 268
mm39_v1_chr2_-_45007407_45007421	1.72359	Hoxd1	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr6_+_129554868_129554868	1.63775	Hoxd1	ENSMUST00000053708.9|Klre1|ENSMUSG00000050241.9|killer cell lectin-like receptor family E member 1
mm39_v1_chr19_-_53932581_53932659	1.55329	Hoxd1	ENSMUST00000236885.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000236098.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000236370.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chr11_-_99482165_99482207	1.51807	Hoxd1	ENSMUST00000104930.2|Krtap1-3|ENSMUSG00000078131.2|keratin associated protein 1-3
mm39_v1_chr5_-_65855511_65855596	1.50181	Hoxd1	ENSMUST00000201948.4|Pds5a|ENSMUSG00000029202.13|PDS5 cohesin associated factor A
mm39_v1_chr19_-_53932867_53932919	1.48433	Hoxd1	ENSMUST00000235688.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000235348.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chrX_+_16485937_16486057	1.46854	Hoxd1	ENSMUST00000026013.6|Maoa|ENSMUSG00000025037.7|monoamine oxidase A
mm39_v1_chr6_-_129484070_129484134	1.43188	Hoxd1	ENSMUST00000183258.8|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000182784.4|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000032265.13|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1	ENSMUST00000162815.2|Olr1|ENSMUSG00000030162.15|oxidized low density lipoprotein (lectin-like) receptor 1
mm39_v1_chr2_+_87696836_87696836	1.40607	Hoxd1	ENSMUST00000213308.3|Olfr1152|ENSMUSG00000045225.5|olfactory receptor 1152
mm39_v1_chr18_+_67597929_67597994	1.40482	Hoxd1	ENSMUST00000025411.9|Prelid3a|ENSMUSG00000024530.9|PRELI domain containing 3A
mm39_v1_chr3_-_86827640_86827656	1.39497	Hoxd1	ENSMUST00000195561.6|Dclk2|ENSMUSG00000028078.15|doublecortin-like kinase 2
mm39_v1_chr6_-_68968278_68968331	1.39269	Hoxd1	ENSMUST00000197966.2|Igkv4-81|ENSMUSG00000076539.4|immunoglobulin kappa variable 4-81
mm39_v1_chr7_+_89814713_89814756	1.38301	Hoxd1	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr14_+_122272069_122272086	1.37516	Hoxd1	ENSMUST00000045976.7|Timm8a2|ENSMUSG00000071229.4|translocase of inner mitochondrial membrane 8A2
mm39_v1_chr13_-_103042294_103042318	1.34986	Hoxd1	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chrX_-_111315519_111315519	1.34904	Hoxd1	ENSMUST00000124335.8|Satl1|ENSMUSG00000025527.10|spermidine/spermine N1-acetyl transferase-like 1
mm39_v1_chr4_-_117539431_117539477	1.34634	Hoxd1	ENSMUST00000102687.4|Dmap1|ENSMUSG00000009640.12|DNA methyltransferase 1-associated protein 1
mm39_v1_chr13_-_43634695_43634823	1.33988	Hoxd1	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr6_+_123239076_123239144	1.33711	Hoxd1	ENSMUST00000032240.4|Clec4d|ENSMUSG00000030144.5|C-type lectin domain family 4, member d
mm39_v1_chr6_+_8948608_8948619	1.33097	Hoxd1	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr2_+_69652714_69652855	1.31466	Hoxd1	ENSMUST00000053087.4|Klhl23|ENSMUSG00000042155.4|kelch-like 23
mm39_v1_chr3_-_54962922_54962940	1.27111	Hoxd1	ENSMUST00000197238.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr2_+_127696548_127696548	1.24063	Hoxd1	ENSMUST00000028859.8|Acoxl|ENSMUSG00000027380.11|acyl-Coenzyme A oxidase-like
mm39_v1_chr10_-_112764879_112764919	1.21088	Hoxd1	ENSMUST00000099276.4|Atxn7l3b|ENSMUSG00000074748.4|ataxin 7-like 3B
mm39_v1_chr16_-_29363671_29363687	1.2103	Hoxd1	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr15_-_79658584_79658603	1.20844	Hoxd1	ENSMUST00000069877.12|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr2_-_111843053_111843053	1.20737	Hoxd1	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr13_-_103042554_103042619	1.19621	Hoxd1	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr4_+_102427247_102427306	1.18209	Hoxd1	ENSMUST00000097950.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr12_+_112727089_112727151	1.17457	Hoxd1	ENSMUST00000063888.5|Pld4|ENSMUSG00000052160.8|phospholipase D family, member 4
mm39_v1_chr11_-_99121822_99121844	1.17242	Hoxd1	ENSMUST00000103133.4|Smarce1|ENSMUSG00000037935.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm39_v1_chr1_-_144427302_144427302	1.15584	Hoxd1	ENSMUST00000184189.3|Rgs21|ENSMUSG00000098509.3|regulator of G-protein signalling 21
mm39_v1_chr18_-_24736521_24736609	1.15116	Hoxd1	ENSMUST00000154205.2|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr14_-_54651442_54651542	1.14966	Hoxd1	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr3_-_54962899_54962911	1.14305	Hoxd1	ENSMUST00000199144.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr1_+_65225834_65225881	1.12925	Hoxd1	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr15_-_79658608_79658673	1.1181	Hoxd1	ENSMUST00000229644.2|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4	ENSMUST00000023055.8|Dnal4|ENSMUSG00000022420.17|dynein, axonemal, light chain 4
mm39_v1_chr2_-_164427367_164427378	1.11511	Hoxd1	ENSMUST00000109342.2|Wfdc6a|ENSMUSG00000074595.10|WAP four-disulfide core domain 6A
mm39_v1_chr4_-_43710231_43710255	1.0992	Hoxd1	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr5_-_140687995_140688133	1.08832	Hoxd1	ENSMUST00000135028.5|Iqce|ENSMUSG00000036555.15|IQ motif containing E	ENSMUST00000077890.12|Iqce|ENSMUSG00000036555.15|IQ motif containing E	ENSMUST00000041783.14|Iqce|ENSMUSG00000036555.15|IQ motif containing E	ENSMUST00000142081.6|Iqce|ENSMUSG00000036555.15|IQ motif containing E
mm39_v1_chr14_+_62529924_62530038	1.07822	Hoxd1	ENSMUST00000166879.8|Rnaseh2b|ENSMUSG00000021932.14|ribonuclease H2, subunit B
mm39_v1_chr19_-_24178000_24178016	1.07294	Hoxd1	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr13_+_51799268_51799342	1.07185	Hoxd1	ENSMUST00000075853.6|Cks2|ENSMUSG00000062248.6|CDC28 protein kinase regulatory subunit 2
mm39_v1_chr4_-_147894245_147894297	1.06864	Hoxd1	ENSMUST00000105734.10|Zfp984|ENSMUSG00000078495.11|zinc finger protein 984	ENSMUST00000176201.2|Gm20707|ENSMUSG00000093594.2|predicted gene 20707
mm39_v1_chr2_-_111880531_111880583	1.04013	Hoxd1	ENSMUST00000213582.2|Olfr1312|ENSMUSG00000074947.4|olfactory receptor 1312	ENSMUST00000213961.3|Olfr1312|ENSMUSG00000074947.4|olfactory receptor 1312	ENSMUST00000215531.2|Olfr1312|ENSMUSG00000074947.4|olfactory receptor 1312
mm39_v1_chr11_-_99494134_99494134	1.02243	Hoxd1	ENSMUST00000072306.4|Gm11938|ENSMUSG00000057674.4|predicted gene 11938
mm39_v1_chr4_+_146599377_146599446	1.01508	Hoxd1	ENSMUST00000140089.7|Zfp981|ENSMUSG00000056300.15|zinc finger protein 981	ENSMUST00000179175.3|Zfp981|ENSMUSG00000056300.15|zinc finger protein 981
mm39_v1_chr1_+_190660689_190660749	1.00299	Hoxd1	ENSMUST00000066632.14|Angel2|ENSMUSG00000026634.17|angel homolog 2	ENSMUST00000110899.7|Angel2|ENSMUSG00000026634.17|angel homolog 2
mm39_v1_chrX_+_110808231_110808231	0.99523	Hoxd1	ENSMUST00000207546.2|Gm45194|ENSMUSG00000109156.2|predicted gene 45194
mm39_v1_chr18_+_37898633_37898633	0.975274	Hoxd1	ENSMUST00000044851.8|Pcdhga12|ENSMUSG00000102428.2|protocadherin gamma subfamily A, 12
mm39_v1_chr4_+_134658209_134658221	0.96779	Hoxd1	ENSMUST00000030622.3|Syf2|ENSMUSG00000028821.9|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm39_v1_chr14_+_32043944_32043999	0.947842	Hoxd1	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr6_-_69261303_69261334	0.934479	Hoxd1	ENSMUST00000103349.2|Igkv4-69|ENSMUSG00000076548.2|immunoglobulin kappa variable 4-69
mm39_v1_chr10_+_80003612_80003680	0.930698	Hoxd1	ENSMUST00000105365.9|Cirbp|ENSMUSG00000045193.14|cold inducible RNA binding protein
mm39_v1_chr6_-_130314465_130314540	0.890971	Hoxd1	ENSMUST00000088017.5|Klra3|ENSMUSG00000067591.13|killer cell lectin-like receptor, subfamily A, member 3	ENSMUST00000111998.9|Klra3|ENSMUSG00000067591.13|killer cell lectin-like receptor, subfamily A, member 3
mm39_v1_chr4_+_132495636_132495701	0.884534	Hoxd1	ENSMUST00000102561.11|Rpa2|ENSMUSG00000028884.15|replication protein A2
mm39_v1_chr6_-_69377328_69377328	0.872594	Hoxd1	ENSMUST00000198345.2|Igkv4-62|ENSMUSG00000094262.3|immunoglobulin kappa variable 4-62
mm39_v1_chr15_-_8740218_8740248	0.833335	Hoxd1	ENSMUST00000005493.14|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr3_+_32490300_32490300	0.831645	Hoxd1	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr1_+_40478926_40478943	0.828277	Hoxd1	ENSMUST00000173514.8|Il1rl1|ENSMUSG00000026069.16|interleukin 1 receptor-like 1
mm39_v1_chr2_+_121787131_121787145	0.809829	Hoxd1	ENSMUST00000110574.8|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr17_-_56343531_56343624	0.809329	Hoxd1	ENSMUST00000233803.2|Sh3gl1|ENSMUSG00000003200.11|SH3-domain GRB2-like 1
mm39_v1_chr1_+_65225886_65225921	0.804751	Hoxd1	ENSMUST00000097707.5|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr13_+_21901791_21901829	0.803352	Hoxd1	ENSMUST00000188775.2|H3c10|ENSMUSG00000101355.2|H3 clustered histone 10
mm39_v1_chr7_-_11414074_11414074	0.802947	Hoxd1	ENSMUST00000227010.2|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72	ENSMUST00000209638.3|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72
mm39_v1_chr5_+_140593075_140593107	0.799637	Hoxd1	ENSMUST00000031555.3|Lfng|ENSMUSG00000029570.6|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr1_-_4479445_4479513	0.793327	Hoxd1	ENSMUST00000208660.2|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr17_-_40553176_40553180	0.785945	Hoxd1	ENSMUST00000026499.6|Crisp3|ENSMUSG00000025433.8|cysteine-rich secretory protein 3
mm39_v1_chr4_+_146586445_146586484	0.782879	Hoxd1	ENSMUST00000105735.9|Zfp981|ENSMUSG00000056300.15|zinc finger protein 981
mm39_v1_chr3_-_96359622_96359622	0.780173	Hoxd1	ENSMUST00000093126.11|BC107364|ENSMUSG00000046317.15|cDNA sequence BC107364	ENSMUST00000098841.4|BC107364|ENSMUSG00000046317.15|cDNA sequence BC107364
mm39_v1_chr14_-_36820304_36820321	0.777791	Hoxd1	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr1_+_40478787_40478815	0.771704	Hoxd1	ENSMUST00000097772.10|Il1rl1|ENSMUSG00000026069.16|interleukin 1 receptor-like 1
mm39_v1_chr4_+_109092610_109092610	0.759893	Hoxd1	ENSMUST00000106628.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr19_-_53933052_53933063	0.75762	Hoxd1	ENSMUST00000135402.4|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chr2_+_88470886_88470941	0.746319	Hoxd1	ENSMUST00000217379.2|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1	ENSMUST00000120598.3|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1
mm39_v1_chr16_-_55755208_55755243	0.741583	Hoxd1	ENSMUST00000121129.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000023270.14|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr16_-_55755160_55755203	0.735681	Hoxd1	ENSMUST00000122280.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000121703.3|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr4_+_145397238_145397255	0.723316	Hoxd1	ENSMUST00000105738.9|Zfp980|ENSMUSG00000058186.14|zinc finger protein 980
mm39_v1_chrX_-_88976458_88976458	0.711831	Hoxd1	ENSMUST00000088146.3|4930415L06Rik|ENSMUSG00000035387.6|RIKEN cDNA 4930415L06 gene
mm39_v1_chr2_-_17465410_17465446	0.710327	Hoxd1	ENSMUST00000145492.2|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr8_+_46463633_46463672	0.704853	Hoxd1	ENSMUST00000110381.9|Lrp2bp|ENSMUSG00000031637.14|Lrp2 binding protein
mm39_v1_chr17_-_56343625_56343647	0.700727	Hoxd1	ENSMUST00000003268.11|Sh3gl1|ENSMUSG00000003200.11|SH3-domain GRB2-like 1
mm39_v1_chr13_+_43019718_43019813	0.697847	Hoxd1	ENSMUST00000131942.2|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chrX_-_8391193_8391193	0.687355	Hoxd1	ENSMUST00000115573.2|Gm14459|ENSMUSG00000079704.3|predicted gene 14459
mm39_v1_chr11_-_76386190_76386282	0.686928	Hoxd1	ENSMUST00000108408.9|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr17_+_37148015_37148111	0.684333	Hoxd1	ENSMUST00000179968.8|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26	ENSMUST00000130367.8|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26	ENSMUST00000053434.15|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26	ENSMUST00000130801.8|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26	ENSMUST00000144182.8|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26	ENSMUST00000123715.8|Trim26|ENSMUSG00000024457.17|tripartite motif-containing 26
mm39_v1_chr2_-_88157559_88157559	0.681551	Hoxd1	ENSMUST00000214207.2|Olfr1175|ENSMUSG00000083855.7|olfactory receptor 1175
mm39_v1_chr7_+_101546059_101546168	0.681271	Hoxd1	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr1_+_161796748_161796826	0.659041	Hoxd1	ENSMUST00000111594.3|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C	ENSMUST00000028021.7|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C	ENSMUST00000161826.2|Gm38304|ENSMUSG00000103393.2|predicted gene, 38304	ENSMUST00000193784.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C
mm39_v1_chr2_-_73410632_73410697	0.658327	Hoxd1	ENSMUST00000028515.4|Chrna1|ENSMUSG00000027107.4|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm39_v1_chr13_-_74956030_74956108	0.655748	Hoxd1	ENSMUST00000065629.6|Cast|ENSMUSG00000021585.11|calpastatin
mm39_v1_chr11_+_43572825_43572918	0.653844	Hoxd1	ENSMUST00000061070.6|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A	ENSMUST00000094294.5|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A
mm39_v1_chr10_+_115854118_115854328	0.646497	Hoxd1	ENSMUST00000063470.11|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr9_+_105272507_105272614	0.629904	Hoxd1	ENSMUST00000035181.10|Aste1|ENSMUSG00000032567.17|asteroid homolog 1	ENSMUST00000123807.8|Aste1|ENSMUSG00000032567.17|asteroid homolog 1
mm39_v1_chr2_-_79738773_79738780	0.615154	Hoxd1	ENSMUST00000102652.10|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent	ENSMUST00000102651.10|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent
mm39_v1_chr18_+_59195534_59195610	0.586138	Hoxd1	ENSMUST00000058633.9|Minar2|ENSMUSG00000050875.12|membrane integral NOTCH2 associated receptor 2	ENSMUST00000175897.8|Minar2|ENSMUSG00000050875.12|membrane integral NOTCH2 associated receptor 2	ENSMUST00000118510.8|Minar2|ENSMUSG00000050875.12|membrane integral NOTCH2 associated receptor 2	ENSMUST00000175830.2|Minar2|ENSMUSG00000050875.12|membrane integral NOTCH2 associated receptor 2
mm39_v1_chr9_+_39932760_39932760	0.584202	Hoxd1	ENSMUST00000215956.3|Olfr981|ENSMUSG00000046678.7|olfactory receptor 981
mm39_v1_chr10_+_115979787_115979808	0.580392	Hoxd1	ENSMUST00000105271.9|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr4_+_109092459_109092459	0.58003	Hoxd1	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr1_-_4430481_4430537	0.579801	Hoxd1	ENSMUST00000027032.6|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr4_+_146033882_146033915	0.577795	Hoxd1	ENSMUST00000105730.2|Zfp987|ENSMUSG00000066009.9|zinc finger protein 987	ENSMUST00000091878.6|Zfp987|ENSMUSG00000066009.9|zinc finger protein 987
mm39_v1_chr1_+_88234454_88234481	0.57376	Hoxd1	ENSMUST00000040210.14|Trpm8|ENSMUSG00000036251.17|transient receptor potential cation channel, subfamily M, member 8
mm39_v1_chr2_-_27365633_27365710	0.567571	Hoxd1	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr2_-_150097511_150097511	0.566215	Hoxd1	ENSMUST00000063463.6|Gm21994|ENSMUSG00000074735.3|predicted gene 21994
mm39_v1_chr16_+_51851588_51851705	0.5596	Hoxd1	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr5_-_99091681_99091717	0.550492	Hoxd1	ENSMUST00000162619.8|Prkg2|ENSMUSG00000029334.15|protein kinase, cGMP-dependent, type II	ENSMUST00000162147.6|Prkg2|ENSMUSG00000029334.15|protein kinase, cGMP-dependent, type II
mm39_v1_chr2_+_89642395_89642395	0.544478	Hoxd1	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr8_-_55177510_55177539	0.540997	Hoxd1	ENSMUST00000175915.8|Wdr17|ENSMUSG00000039375.17|WD repeat domain 17
mm39_v1_chr2_+_121786892_121786970	0.535811	Hoxd1	ENSMUST00000110578.8|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr18_+_59195354_59195410	0.534508	Hoxd1	ENSMUST00000165666.9|Minar2|ENSMUSG00000050875.12|membrane integral NOTCH2 associated receptor 2
mm39_v1_chr11_-_99265721_99265735	0.533081	Hoxd1	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr7_+_30676465_30676470	0.532603	Hoxd1	ENSMUST00000058093.6|Fam187b|ENSMUSG00000046826.8|family with sequence similarity 187, member B
mm39_v1_chr11_-_45845992_45846020	0.528785	Hoxd1	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr13_-_74956640_74956691	0.518129	Hoxd1	ENSMUST00000231578.2|Cast|ENSMUSG00000021585.11|calpastatin
mm39_v1_chr4_+_145237329_145237361	0.500389	Hoxd1	ENSMUST00000105742.8|Zfp990|ENSMUSG00000078503.10|zinc finger protein 990	ENSMUST00000136309.8|Zfp990|ENSMUSG00000078503.10|zinc finger protein 990
mm39_v1_chr8_-_22396428_22396453	0.492969	Hoxd1	ENSMUST00000051965.5|Defb11|ENSMUSG00000045337.5|defensin beta 11
mm39_v1_chr11_-_117716918_117716918	0.49197	Hoxd1	ENSMUST00000026661.4|Tk1|ENSMUSG00000025574.14|thymidine kinase 1
mm39_v1_chr13_+_24985640_24985640	0.491372	Hoxd1	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr1_+_161796854_161796881	0.484325	Hoxd1	ENSMUST00000160881.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C	ENSMUST00000159648.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C
mm39_v1_chr19_-_41921676_41921862	0.477968	Hoxd1	ENSMUST00000075280.12|Exosc1|ENSMUSG00000034321.15|exosome component 1	ENSMUST00000112123.4|Exosc1|ENSMUSG00000034321.15|exosome component 1
mm39_v1_chr9_-_119170456_119170486	0.472491	Hoxd1	ENSMUST00000139870.2|Myd88|ENSMUSG00000032508.9|myeloid differentiation primary response gene 88
mm39_v1_chr5_+_52940391_52940458	0.44571	Hoxd1	ENSMUST00000031077.13|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4	ENSMUST00000113904.9|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4	ENSMUST00000199840.2|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4
mm39_v1_chr9_+_72714156_72714156	0.443198	Hoxd1	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr5_-_138185438_138185499	0.438188	Hoxd1	ENSMUST00000110937.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000139276.2|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000048698.14|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000123415.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr5_-_138185686_138185724	0.437716	Hoxd1	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr6_+_132928065_132928065	0.436451	Hoxd1	ENSMUST00000070991.5|Tas2r129|ENSMUSG00000063762.6|taste receptor, type 2, member 129
mm39_v1_chr16_-_64591509_64591546	0.431391	Hoxd1	ENSMUST00000076991.7|4930453N24Rik|ENSMUSG00000059920.10|RIKEN cDNA 4930453N24 gene
mm39_v1_chr2_-_79738734_79738745	0.426782	Hoxd1	ENSMUST00000090756.11|Pde1a|ENSMUSG00000059173.20|phosphodiesterase 1A, calmodulin-dependent
mm39_v1_chr7_+_19102423_19102482	0.420192	Hoxd1	ENSMUST00000132655.2|Ppp1r13l|ENSMUSG00000040734.15|protein phosphatase 1, regulatory subunit 13 like
mm39_v1_chr5_-_108943211_108943241	0.418383	Hoxd1	ENSMUST00000004943.2|Tmed11|ENSMUSG00000004821.2|transmembrane p24 trafficking protein 11
mm39_v1_chr13_+_22508759_22508759	0.412027	Hoxd1	ENSMUST00000226225.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197	ENSMUST00000227017.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197
mm39_v1_chr2_+_3425159_3425244	0.41201	Hoxd1	ENSMUST00000100463.10|Dclre1c|ENSMUSG00000026648.19|DNA cross-link repair 1C	ENSMUST00000061852.12|Dclre1c|ENSMUSG00000026648.19|DNA cross-link repair 1C	ENSMUST00000102988.10|Dclre1c|ENSMUSG00000026648.19|DNA cross-link repair 1C	ENSMUST00000115066.8|Dclre1c|ENSMUSG00000026648.19|DNA cross-link repair 1C
mm39_v1_chr5_-_137213788_137213788	0.40691	Hoxd1	ENSMUST00000239135.2|Gm31160|ENSMUSG00000118522.2|predicted gene, 31160
mm39_v1_chr18_-_61840654_61840729	0.405208	Hoxd1	ENSMUST00000025472.7|Pcyox1l|ENSMUSG00000024579.8|prenylcysteine oxidase 1 like
mm39_v1_chr2_-_132089667_132089727	0.395432	Hoxd1	ENSMUST00000110163.8|Tmem230|ENSMUSG00000027341.11|transmembrane protein 230	ENSMUST00000180286.2|Tmem230|ENSMUSG00000027341.11|transmembrane protein 230	ENSMUST00000028816.9|Tmem230|ENSMUSG00000027341.11|transmembrane protein 230
mm39_v1_chr10_+_94411119_94411152	0.387718	Hoxd1	ENSMUST00000121471.8|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr13_+_24986003_24986003	0.382106	Hoxd1	ENSMUST00000155575.2|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr14_+_57762191_57762261	0.382021	Hoxd1	ENSMUST00000089494.6|Il17d|ENSMUSG00000050222.12|interleukin 17D
mm39_v1_chr7_-_44578834_44578942	0.34818	Hoxd1	ENSMUST00000107857.11|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000167930.8|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000085399.13|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000166972.9|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit
mm39_v1_chr3_+_94745009_94745034	0.335362	Hoxd1	ENSMUST00000107266.8|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain	ENSMUST00000042402.12|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain	ENSMUST00000107269.2|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr1_-_173161069_173161088	0.30895	Hoxd1	ENSMUST00000038227.6|Ackr1|ENSMUSG00000037872.6|atypical chemokine receptor 1 (Duffy blood group)
mm39_v1_chr11_-_99134885_99134964	0.279481	Hoxd1	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr10_+_73782857_73782903	0.278589	Hoxd1	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr6_-_128252540_128252540	0.273736	Hoxd1	ENSMUST00000130454.8|Tead4|ENSMUSG00000030353.16|TEA domain family member 4
mm39_v1_chr4_+_147576874_147576874	0.273012	Hoxd1	ENSMUST00000105721.9|Zfp982|ENSMUSG00000078496.10|zinc finger protein 982
mm39_v1_chr3_+_60503051_60503132	0.270694	Hoxd1	ENSMUST00000192757.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000193518.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000195817.3|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr2_+_65451100_65451170	0.255994	Hoxd1	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr19_+_55883924_55883942	0.254432	Hoxd1	ENSMUST00000111646.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chrX_-_142716085_142716149	0.245703	Hoxd1	ENSMUST00000087313.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr2_+_37406630_37406647	0.240204	Hoxd1	ENSMUST00000065441.7|Gpr21|ENSMUSG00000053164.7|G protein-coupled receptor 21
mm39_v1_chr9_-_107749594_107749627	0.236375	Hoxd1	ENSMUST00000183035.2|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chrX_-_142716200_142716307	0.23104	Hoxd1	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr3_+_63148887_63148958	0.221531	Hoxd1	ENSMUST00000194324.6|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr10_-_128462616_128462635	0.220717	Hoxd1	ENSMUST00000026420.7|Rps26|ENSMUSG00000025362.7|ribosomal protein S26
mm39_v1_chr6_-_57992144_57992144	0.21482	Hoxd1	ENSMUST00000228070.2|Vmn1r26|ENSMUSG00000048697.5|vomeronasal 1 receptor 26	ENSMUST00000228040.2|Vmn1r26|ENSMUSG00000048697.5|vomeronasal 1 receptor 26
mm39_v1_chr11_-_45846291_45846321	0.214271	Hoxd1	ENSMUST00000011398.13|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr14_-_44987797_44987797	0.212491	Hoxd1	ENSMUST00000226900.2|Gm8267|ENSMUSG00000091923.9|predicted gene 8267
mm39_v1_chr19_-_5610628_5610674	0.20845	Hoxd1	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr11_-_99979052_99979096	0.208248	Hoxd1	ENSMUST00000107419.2|Krt32|ENSMUSG00000046095.6|keratin 32
mm39_v1_chr14_-_51308899_51308899	0.204613	Hoxd1	ENSMUST00000048478.6|Olfr750|ENSMUSG00000035932.7|olfactory receptor 750
mm39_v1_chr12_-_99529767_99529888	0.20161	Hoxd1	ENSMUST00000176928.3|Foxn3|ENSMUSG00000033713.13|forkhead box N3	ENSMUST00000223484.2|Foxn3|ENSMUSG00000033713.13|forkhead box N3
mm39_v1_chrX_+_101847829_101847829	0.193273	Hoxd1	ENSMUST00000131451.2|Dmrtc1c1|ENSMUSG00000067562.12|DMRT-like family C1c1
mm39_v1_chr17_-_57338468_57338538	0.189463	Hoxd1	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr14_+_65612788_65612842	0.18469	Hoxd1	ENSMUST00000224687.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr13_-_21330037_21330037	0.163989	Hoxd1	ENSMUST00000216039.3|Olfr1368|ENSMUSG00000045474.8|olfactory receptor 1368
mm39_v1_chr17_-_37523969_37524009	0.162619	Hoxd1	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr7_+_45364822_45364881	0.157215	Hoxd1	ENSMUST00000210640.2|Rpl18|ENSMUSG00000059070.17|ribosomal protein L18
mm39_v1_chr9_-_39618413_39618413	0.150495	Hoxd1	ENSMUST00000215192.2|Olfr149|ENSMUSG00000062121.4|olfactory receptor 149
mm39_v1_chr18_+_37488174_37488324	0.14968	Hoxd1	ENSMUST00000192867.2|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8	ENSMUST00000051163.3|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8
mm39_v1_chr15_-_100322089_100322100	0.140115	Hoxd1	ENSMUST00000154331.2|Slc11a2|ENSMUSG00000023030.17|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm39_v1_chr1_+_92500847_92500847	0.132785	Hoxd1	ENSMUST00000074859.3|Olfr1413|ENSMUSG00000058904.4|olfactory receptor 1413
mm39_v1_chrX_-_98514278_98514354	0.120388	Hoxd1	ENSMUST00000113797.4|Pja1|ENSMUSG00000034403.17|praja ring finger ubiquitin ligase 1	ENSMUST00000113790.8|Pja1|ENSMUSG00000034403.17|praja ring finger ubiquitin ligase 1	ENSMUST00000036354.7|Pja1|ENSMUSG00000034403.17|praja ring finger ubiquitin ligase 1	ENSMUST00000167246.2|Pja1|ENSMUSG00000034403.17|praja ring finger ubiquitin ligase 1
mm39_v1_chr16_+_51851917_51851933	0.116365	Hoxd1	ENSMUST00000227062.2|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr10_+_116013122_116013163	0.113732	Hoxd1	ENSMUST00000148731.8|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr3_+_94744844_94744884	0.111981	Hoxd1	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr10_+_129493563_129493563	0.105844	Hoxd1	ENSMUST00000217094.2|Olfr800|ENSMUSG00000108114.3|olfactory receptor 800
mm39_v1_chr4_-_114991478_114991478	0.0987564	Hoxd1	ENSMUST00000106545.8|Cyp4x1|ENSMUSG00000047155.14|cytochrome P450, family 4, subfamily x, polypeptide 1
mm39_v1_chr14_-_52341426_52341468	0.0888345	Hoxd1	ENSMUST00000227536.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227195.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228815.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228198.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227458.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228232.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227242.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228748.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr2_-_168609110_168609126	0.0779222	Hoxd1	ENSMUST00000029061.12|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4	ENSMUST00000103074.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr15_-_100321973_100322054	0.0693913	Hoxd1	ENSMUST00000154676.2|Slc11a2|ENSMUSG00000023030.17|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm39_v1_chr4_-_147787010_147787010	0.0657847	Hoxd1	ENSMUST00000117638.2|Zfp534|ENSMUSG00000062518.8|zinc finger protein 534
mm39_v1_chr9_-_18667005_18667005	0.0567117	Hoxd1	ENSMUST00000066997.4|Olfr24|ENSMUSG00000054141.6|olfactory receptor 24
mm39_v1_chr4_+_147390131_147390131	0.0457394	Hoxd1	ENSMUST00000148762.4|Zfp988|ENSMUSG00000078498.6|zinc finger protein 988
mm39_v1_chr3_-_106733603_106733603	0.0446631	Hoxd1	ENSMUST00000213616.3|Olfr266|ENSMUSG00000043529.5|olfactory receptor 266
mm39_v1_chr19_-_12868022_12868022	0.0442989	Hoxd1	ENSMUST00000081236.3|Olfr1446|ENSMUSG00000057817.7|olfactory receptor 1446
mm39_v1_chr14_+_47535717_47535794	0.0363986	Hoxd1	ENSMUST00000166743.9|Mapk1ip1l|ENSMUSG00000021840.18|mitogen-activated protein kinase 1 interacting protein 1-like
mm39_v1_chr5_-_70999547_70999681	0.0357574	Hoxd1	ENSMUST00000199705.2|Gabrg1|ENSMUSG00000001260.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm39_v1_chr5_-_118382926_118383181	0.0192614	Hoxd1	ENSMUST00000117177.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000133372.2|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000154786.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000121369.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2
