mm39_v1_chr6_+_71176811_71176872	30.1845	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067492.8|Fabp1|ENSMUSG00000054422.8|fatty acid binding protein 1, liver
mm39_v1_chr7_-_135130374_135130389	24.6781	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053716.8|Clrn3|ENSMUSG00000050866.8|clarin 3
mm39_v1_chr3_+_3699205_3699221	23.3468	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108394.3|Hnf4g|ENSMUSG00000017688.15|hepatocyte nuclear factor 4, gamma
mm39_v1_chr4_+_11758147_11758220	22.9018	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029871.12|Cdh17|ENSMUSG00000028217.12|cadherin 17	ENSMUST00000108303.2|Cdh17|ENSMUSG00000028217.12|cadherin 17
mm39_v1_chrX_+_95498965_95499017	20.4704	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033553.14|Heph|ENSMUSG00000031209.15|hephaestin
mm39_v1_chr11_-_100036792_100036946	17.5716	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007317.8|Krt19|ENSMUSG00000020911.15|keratin 19
mm39_v1_chr7_+_123061497_123061519	16.7069	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033023.10|Aqp8|ENSMUSG00000030762.12|aquaporin 8
mm39_v1_chr13_-_24098981_24098995	16.6596	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110407.4|Slc17a4|ENSMUSG00000021336.18|solute carrier family 17 (sodium phosphate), member 4
mm39_v1_chr7_+_123061535_123061552	16.6086	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098056.6|Aqp8|ENSMUSG00000030762.12|aquaporin 8
mm39_v1_chr17_+_31652073_31652131	16.4594	Hoxd11_Cdx1_Hoxc11	ENSMUST00000237363.2|Pde9a|ENSMUSG00000041119.13|phosphodiesterase 9A
mm39_v1_chr17_+_31652029_31652045	16.4233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136384.9|Pde9a|ENSMUSG00000041119.13|phosphodiesterase 9A
mm39_v1_chr16_-_56616186_56616238	15.8648	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023437.5|Adgrg7|ENSMUSG00000022755.5|adhesion G protein-coupled receptor G7
mm39_v1_chr7_-_140856642_140856704	15.8172	Hoxd11_Cdx1_Hoxc11	ENSMUST00000080654.7|Cdhr5|ENSMUSG00000025497.16|cadherin-related family member 5	ENSMUST00000167263.9|Cdhr5|ENSMUSG00000025497.16|cadherin-related family member 5
mm39_v1_chr13_-_24098951_24098972	15.7902	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021769.16|Slc17a4|ENSMUSG00000021336.18|solute carrier family 17 (sodium phosphate), member 4
mm39_v1_chr14_-_36832044_36832063	14.2039	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179488.3|2610528A11Rik|ENSMUSG00000096001.3|RIKEN cDNA 2610528A11 gene
mm39_v1_chr10_-_116732813_116732861	13.3451	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048229.9|Myrfl|ENSMUSG00000034057.9|myelin regulatory factor-like
mm39_v1_chr10_+_116013256_116013322	13.3415	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155606.8|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R	ENSMUST00000128399.2|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr3_-_144638284_144638297	12.2451	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098549.4|Clca4b|ENSMUSG00000074195.4|chloride channel accessory 4B
mm39_v1_chr2_+_57887896_57887896	11.547	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112616.8|Galnt5|ENSMUSG00000026828.12|polypeptide N-acetylgalactosaminyltransferase 5	ENSMUST00000166729.2|Galnt5|ENSMUSG00000026828.12|polypeptide N-acetylgalactosaminyltransferase 5
mm39_v1_chr2_+_163348728_163348780	11.0849	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143911.8|Hnf4a|ENSMUSG00000017950.17|hepatic nuclear factor 4, alpha
mm39_v1_chr1_+_165958036_165958048	10.6921	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166860.2|Gpa33|ENSMUSG00000000544.15|glycoprotein A33 (transmembrane)
mm39_v1_chr10_+_116013122_116013163	10.6658	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148731.8|Ptprr|ENSMUSG00000020151.17|protein tyrosine phosphatase, receptor type, R
mm39_v1_chr8_-_5155347_5155358	9.96798	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023835.3|Slc10a2|ENSMUSG00000023073.3|solute carrier family 10, member 2
mm39_v1_chr3_-_72875187_72875202	9.20043	Hoxd11_Cdx1_Hoxc11	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr17_-_43813664_43813703	9.02585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024707.9|Mep1a|ENSMUSG00000023914.17|meprin 1 alpha	ENSMUST00000117137.8|Mep1a|ENSMUSG00000023914.17|meprin 1 alpha
mm39_v1_chr6_-_24168082_24168096	8.80694	Hoxd11_Cdx1_Hoxc11	ENSMUST00000031713.9|Slc13a1|ENSMUSG00000029700.12|solute carrier family 13 (sodium/sulfate symporters), member 1
mm39_v1_chr19_-_10995390_10995404	8.58541	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177684.3|Ms4a18|ENSMUSG00000094584.3|membrane-spanning 4-domains, subfamily A, member 18
mm39_v1_chr11_+_96085118_96085142	7.77178	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062709.4|Hoxb13|ENSMUSG00000049604.4|homeobox B13
mm39_v1_chr7_+_130633776_130633806	7.58654	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chrX_+_138464065_138464088	7.35195	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113027.8|Rnf128|ENSMUSG00000031438.12|ring finger protein 128
mm39_v1_chr6_-_52203146_52203176	7.24605	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr15_-_78739717_78739736	7.15003	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044584.6|Lgals2|ENSMUSG00000043501.6|lectin, galactose-binding, soluble 2
mm39_v1_chr3_+_57332735_57332873	6.99697	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029377.8|Tm4sf4|ENSMUSG00000027801.8|transmembrane 4 superfamily member 4
mm39_v1_chr3_-_144555062_144555118	6.91933	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159989.2|Clca3b|ENSMUSG00000037033.10|chloride channel accessory 3B
mm39_v1_chr19_+_24853039_24853057	6.89161	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073080.7|Gm10053|ENSMUSG00000058927.7|predicted gene 10053
mm39_v1_chr18_+_21205386_21205408	6.88138	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082235.5|Mep1b|ENSMUSG00000024313.9|meprin 1 beta
mm39_v1_chr2_-_103114105_103114147	6.57589	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111174.8|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chr18_-_32170012_32170072	6.42669	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134663.2|Myo7b|ENSMUSG00000024388.12|myosin VIIB
mm39_v1_chr1_+_165957784_165957807	6.41146	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060833.14|Gpa33|ENSMUSG00000000544.15|glycoprotein A33 (transmembrane)
mm39_v1_chr7_+_141276575_141276591	6.40169	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185406.8|Muc2|ENSMUSG00000025515.17|mucin 2
mm39_v1_chr11_-_43492367_43492395	6.09212	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020672.5|Fabp6|ENSMUSG00000020405.5|fatty acid binding protein 6
mm39_v1_chr3_-_63758672_63758780	6.04916	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162269.9|Plch1|ENSMUSG00000036834.17|phospholipase C, eta 1	ENSMUST00000159676.9|Plch1|ENSMUSG00000036834.17|phospholipase C, eta 1	ENSMUST00000175947.8|Plch1|ENSMUSG00000036834.17|phospholipase C, eta 1
mm39_v1_chr19_+_56414114_56414126	5.55974	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238892.2|Casp7|ENSMUSG00000025076.13|caspase 7
mm39_v1_chr10_+_79656823_79656863	5.4927	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169041.9|Misp|ENSMUSG00000035852.12|mitotic spindle positioning
mm39_v1_chrX_+_162923474_162923614	5.46817	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073973.11|Ace2|ENSMUSG00000015405.16|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm39_v1_chr3_+_138019040_138019054	5.39509	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013455.13|Adh6a|ENSMUSG00000053054.14|alcohol dehydrogenase 6A (class V)	ENSMUST00000106247.2|Adh6a|ENSMUSG00000053054.14|alcohol dehydrogenase 6A (class V)
mm39_v1_chr16_-_21814190_21814222	5.07542	Hoxd11_Cdx1_Hoxc11	ENSMUST00000231766.2|Liph|ENSMUSG00000044626.14|lipase, member H	ENSMUST00000074230.12|Liph|ENSMUSG00000044626.14|lipase, member H
mm39_v1_chr1_+_165957909_165957993	4.7533	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166159.2|Gpa33|ENSMUSG00000000544.15|glycoprotein A33 (transmembrane)
mm39_v1_chr2_+_122129379_122129384	4.6155	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028656.2|Duoxa2|ENSMUSG00000027225.8|dual oxidase maturation factor 2
mm39_v1_chr6_-_83513222_83513252	4.59067	Hoxd11_Cdx1_Hoxc11	ENSMUST00000075161.12|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chr6_-_52195663_52195696	4.5429	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr1_-_45542442_45542442	4.48529	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086430.5|Col5a2|ENSMUSG00000026042.17|collagen, type V, alpha 2
mm39_v1_chr6_-_83513184_83513213	4.32838	Hoxd11_Cdx1_Hoxc11	ENSMUST00000205926.2|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chr1_+_74752710_74752733	4.31731	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027356.7|Cyp27a1|ENSMUSG00000026170.7|cytochrome P450, family 27, subfamily a, polypeptide 1
mm39_v1_chr3_+_62327089_62327089	4.31452	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161057.2|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr7_-_30312246_30312305	4.28058	Hoxd11_Cdx1_Hoxc11	ENSMUST00000006476.6|Upk1a|ENSMUSG00000006313.6|uroplakin 1A
mm39_v1_chr16_-_21814289_21814413	4.24099	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060673.8|Liph|ENSMUSG00000044626.14|lipase, member H
mm39_v1_chr17_+_3447465_3447482	4.19639	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr9_-_9239056_9239106	4.18178	Hoxd11_Cdx1_Hoxc11	ENSMUST00000093893.12|Arhgap42|ENSMUSG00000050730.18|Rho GTPase activating protein 42
mm39_v1_chr3_+_138121245_138121271	3.90571	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161312.8|Adh4|ENSMUSG00000037797.15|alcohol dehydrogenase 4 (class II), pi polypeptide	ENSMUST00000013458.9|Adh4|ENSMUSG00000037797.15|alcohol dehydrogenase 4 (class II), pi polypeptide
mm39_v1_chr1_-_128256048_128256063	3.87909	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073490.7|Lct|ENSMUSG00000026354.9|lactase
mm39_v1_chr13_-_23806530_23806547	3.83416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062045.4|H1f4|ENSMUSG00000051627.4|H1.4 linker histone, cluster member
mm39_v1_chr10_+_5589210_5589225	3.83093	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019906.6|Vip|ENSMUSG00000019772.6|vasoactive intestinal polypeptide
mm39_v1_chr5_+_63969706_63969891	3.77611	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.8|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene	ENSMUST00000196575.5|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene
mm39_v1_chr2_-_160208977_160208993	3.67507	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099126.5|Mafb|ENSMUSG00000074622.5|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm39_v1_chr6_-_52211882_52211940	3.61871	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr2_+_15531281_15531293	3.41237	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146205.3|Malrd1|ENSMUSG00000075520.6|MAM and LDL receptor class A domain containing 1
mm39_v1_chr1_-_57008986_57009031	3.37723	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176759.2|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2	ENSMUST00000177424.2|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr7_-_19411866_19411877	3.19682	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142352.9|Apoc2|ENSMUSG00000002992.18|apolipoprotein C-II
mm39_v1_chr1_-_37535170_37535187	3.1093	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148047.2|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr1_-_37535202_37535242	3.0674	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143636.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr5_-_87485023_87485061	3.05432	Hoxd11_Cdx1_Hoxc11	ENSMUST00000031195.3|Ugt2a3|ENSMUSG00000035780.3|UDP glucuronosyltransferase 2 family, polypeptide A3
mm39_v1_chr1_+_177557380_177557405	3.05326	Hoxd11_Cdx1_Hoxc11	ENSMUST00000016106.6|1700016C15Rik|ENSMUSG00000015962.6|RIKEN cDNA 1700016C15 gene
mm39_v1_chr6_-_70412460_70412492	3.02476	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103394.2|Igkv6-14|ENSMUSG00000096844.2|immunoglobulin kappa variable 6-14
mm39_v1_chr10_-_40018243_40018256	2.99448	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092566.8|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10	ENSMUST00000213488.2|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm39_v1_chr6_-_119365632_119365734	2.98308	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169744.8|Adipor2|ENSMUSG00000030168.14|adiponectin receptor 2
mm39_v1_chr5_-_120610828_120610895	2.97289	Hoxd11_Cdx1_Hoxc11	ENSMUST00000052258.14|Sdsl|ENSMUSG00000029596.14|serine dehydratase-like	ENSMUST00000031594.13|Sdsl|ENSMUSG00000029596.14|serine dehydratase-like
mm39_v1_chr14_+_31807760_31807834	2.96889	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170600.8|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000168986.7|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000169649.2|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1
mm39_v1_chr10_+_101517348_101517525	2.93991	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179929.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000219195.2|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000127504.9|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr3_-_88366351_88366408	2.56537	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165898.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000127436.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr5_-_73349191_73349276	2.56072	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176910.3|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chrX_-_133442596_133442649	2.54239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054213.5|Timm8a1|ENSMUSG00000048007.5|translocase of inner mitochondrial membrane 8A1
mm39_v1_chr3_-_144525255_144525255	2.5346	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029929.12|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr9_+_103917821_103917861	2.49478	Hoxd11_Cdx1_Hoxc11	ENSMUST00000216593.2|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)	ENSMUST00000147249.3|Gm28305|ENSMUSG00000101152.2|predicted gene 28305
mm39_v1_chr8_+_110717062_110717138	2.45618	Hoxd11_Cdx1_Hoxc11	ENSMUST00000001720.14|Tat|ENSMUSG00000001670.14|tyrosine aminotransferase	ENSMUST00000143741.2|Tat|ENSMUSG00000001670.14|tyrosine aminotransferase
mm39_v1_chr15_-_101336669_101336685	2.44159	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081945.5|Krt87|ENSMUSG00000047641.9|keratin 87
mm39_v1_chr6_-_70435020_70435039	2.44024	Hoxd11_Cdx1_Hoxc11	ENSMUST00000198184.2|Igkv6-13|ENSMUSG00000076594.3|immunoglobulin kappa variable 6-13
mm39_v1_chr1_-_71692320_71692359	2.40515	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186940.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188894.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188674.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000189821.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000187938.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000190780.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186736.2|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000055226.13|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186129.7|Fn1|ENSMUSG00000026193.16|fibronectin 1
mm39_v1_chr4_-_102883905_102884039	2.39628	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084382.6|Insl5|ENSMUSG00000066090.6|insulin-like 5	ENSMUST00000106869.3|Insl5|ENSMUSG00000066090.6|insulin-like 5
mm39_v1_chr3_-_49711706_49711758	2.3716	Hoxd11_Cdx1_Hoxc11	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chrX_+_55824797_55824925	2.3677	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114773.10|Fhl1|ENSMUSG00000023092.17|four and a half LIM domains 1
mm39_v1_chr19_+_58748132_58748177	2.29151	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026081.5|Pnliprp2|ENSMUSG00000025091.5|pancreatic lipase-related protein 2
mm39_v1_chr9_+_110948492_110948516	2.22606	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217341.3|Lrrfip2|ENSMUSG00000032497.20|leucine rich repeat (in FLII) interacting protein 2
mm39_v1_chr17_-_35293447_35293476	2.21099	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007259.4|Ly6g6d|ENSMUSG00000073413.10|lymphocyte antigen 6 complex, locus G6D
mm39_v1_chr5_-_51725059_51725074	2.16126	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127135.3|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr17_+_71326510_71326517	2.16017	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073211.13|Myom1|ENSMUSG00000024049.16|myomesin 1	ENSMUST00000024847.14|Myom1|ENSMUSG00000024049.16|myomesin 1
mm39_v1_chr8_+_57774010_57774027	2.11383	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr10_-_128996851_128996851	2.03883	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078914.3|Olfr771|ENSMUSG00000061367.4|olfactory receptor 771
mm39_v1_chr7_+_126808016_126808071	2.03873	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206204.2|Mylpf|ENSMUSG00000030672.13|myosin light chain, phosphorylatable, fast skeletal muscle	ENSMUST00000206772.2|Mylpf|ENSMUSG00000030672.13|myosin light chain, phosphorylatable, fast skeletal muscle
mm39_v1_chr17_-_36207965_36208033	1.98114	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150056.2|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000156817.2|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000146451.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000148482.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene
mm39_v1_chr17_+_71326542_71326558	1.96775	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179759.3|Myom1|ENSMUSG00000024049.16|myomesin 1
mm39_v1_chr1_-_37575313_37575317	1.96533	Hoxd11_Cdx1_Hoxc11	ENSMUST00000042161.15|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr9_+_111014254_111014265	1.91511	Hoxd11_Cdx1_Hoxc11	ENSMUST00000198986.2|Lrrfip2|ENSMUSG00000032497.20|leucine rich repeat (in FLII) interacting protein 2
mm39_v1_chr1_+_45350698_45350798	1.90147	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087883.13|Col3a1|ENSMUSG00000026043.19|collagen, type III, alpha 1
mm39_v1_chr10_-_107321938_107321995	1.88998	Hoxd11_Cdx1_Hoxc11	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr3_-_49711765_49711772	1.86368	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr10_+_26698556_26698598	1.82398	Hoxd11_Cdx1_Hoxc11	ENSMUST00000135866.2|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr1_-_144052997_144053110	1.81309	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111941.2|Rgs13|ENSMUSG00000051079.9|regulator of G-protein signaling 13	ENSMUST00000052375.8|Rgs13|ENSMUSG00000051079.9|regulator of G-protein signaling 13
mm39_v1_chr1_-_144124871_144124980	1.78677	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189061.7|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chrX_+_132809189_132809213	1.76225	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113304.2|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr10_-_25076008_25076076	1.71347	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr2_-_136727599_136727599	1.69874	Hoxd11_Cdx1_Hoxc11	ENSMUST00000231720.2|ENSMUSG00000116563.2|ENSMUSG00000116563.2|novel protein
mm39_v1_chr17_-_16046780_16046853	1.64213	Hoxd11_Cdx1_Hoxc11	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr6_-_124942457_124942505	1.62767	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112439.9|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr6_-_124942366_124942421	1.62507	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129446.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000032220.15|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr4_+_116578117_116578201	1.62364	Hoxd11_Cdx1_Hoxc11	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr15_+_25774070_25774130	1.62209	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125667.3|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr3_-_19319123_19319138	1.59233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121951.2|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr7_-_44711771_44711859	1.57202	Hoxd11_Cdx1_Hoxc11	ENSMUST00000210101.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000209219.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr8_-_45747883_45747901	1.54173	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026907.6|Klkb1|ENSMUSG00000109764.2|kallikrein B, plasma 1
mm39_v1_chr4_-_76262464_76262486	1.5022	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050757.16|Ptprd|ENSMUSG00000028399.19|protein tyrosine phosphatase, receptor type, D
mm39_v1_chr5_+_4073343_4073415	1.47566	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238634.2|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr3_-_88366159_88366205	1.46378	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr8_-_70355208_70355208	1.45266	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110167.5|Ndufa13|ENSMUSG00000036199.10|NADH:ubiquinone oxidoreductase subunit A13
mm39_v1_chr18_+_65054188_65054219	1.4513	Hoxd11_Cdx1_Hoxc11	ENSMUST00000236898.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000237410.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr11_-_21320452_21320486	1.4504	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102875.11|Ugp2|ENSMUSG00000001891.17|UDP-glucose pyrophosphorylase 2
mm39_v1_chr15_+_59186876_59186977	1.44855	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022977.14|Sqle|ENSMUSG00000022351.15|squalene epoxidase	ENSMUST00000100640.5|Sqle|ENSMUSG00000022351.15|squalene epoxidase
mm39_v1_chr7_-_141015240_141015310	1.44683	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr2_+_113235475_113235502	1.43632	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238883.2|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr5_-_73413888_73413979	1.42706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr8_-_58106057_58106074	1.41155	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr2_-_86180622_86180628	1.39144	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099894.5|Olfr1055|ENSMUSG00000075189.6|olfactory receptor 1055	ENSMUST00000213564.3|Olfr1055|ENSMUSG00000075189.6|olfactory receptor 1055
mm39_v1_chr9_-_96774719_96774740	1.36245	Hoxd11_Cdx1_Hoxc11	ENSMUST00000154146.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1
mm39_v1_chr7_-_44711075_44711115	1.34382	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007981.9|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000210500.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000210493.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr7_+_140343652_140343758	1.32414	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026552.9|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000209253.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1	ENSMUST00000210235.2|Cyp2e1|ENSMUSG00000025479.10|cytochrome P450, family 2, subfamily e, polypeptide 1
mm39_v1_chr10_-_105410280_105410313	1.27971	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.9|Tmtc2|ENSMUSG00000036019.9|transmembrane and tetratricopeptide repeat containing 2
mm39_v1_chr14_-_31807552_31807686	1.23477	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022461.11|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000067955.12|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000124303.9|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3
mm39_v1_chr9_-_44710480_44710604	1.1989	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr13_+_13612136_13612136	1.16995	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr7_-_44711130_44711166	1.16111	Hoxd11_Cdx1_Hoxc11	ENSMUST00000211337.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr16_-_55659194_55659262	1.15841	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.9|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	ENSMUST00000036273.13|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	ENSMUST00000114457.8|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm39_v1_chr2_-_32341408_32341472	1.14266	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028160.15|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	ENSMUST00000113310.9|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm39_v1_chr9_+_21746785_21746806	1.1305	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058777.8|Angptl8|ENSMUSG00000047822.9|angiopoietin-like 8
mm39_v1_chr14_+_28233301_28233362	1.12855	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.2|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr6_-_124942170_124942258	1.09026	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148485.2|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000129976.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chrX_-_7185424_7185527	1.08921	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115746.8|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr19_-_7943365_7943401	1.08048	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr3_+_102981352_102981369	1.06287	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176440.2|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr11_+_97689819_97689847	1.03697	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143571.2|Lasp1|ENSMUSG00000038366.16|LIM and SH3 protein 1
mm39_v1_chr4_-_49408040_49408151	1.01039	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081541.9|Acnat2|ENSMUSG00000060317.10|acyl-coenzyme A amino acid N-acyltransferase 2
mm39_v1_chr2_-_140513382_140513399	0.979784	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr4_-_63965161_63965252	0.974941	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107377.10|Tnc|ENSMUSG00000028364.16|tenascin C
mm39_v1_chr12_-_111933328_111933460	0.96717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000222874.2|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL	ENSMUST00000223191.2|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL	ENSMUST00000021719.7|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL
mm39_v1_chr5_-_87572060_87572064	0.941509	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072818.6|Ugt2b38|ENSMUSG00000061906.6|UDP glucuronosyltransferase 2 family, polypeptide B38
mm39_v1_chrX_+_132809166_132809180	0.926331	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033606.15|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr7_+_127399776_127399787	0.907259	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046863.12|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	ENSMUST00000206674.2|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	ENSMUST00000106272.8|Hsd3b7|ENSMUSG00000042289.12|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm39_v1_chr11_-_101785181_101785200	0.883501	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057054.8|Meox1|ENSMUSG00000001493.10|mesenchyme homeobox 1
mm39_v1_chr14_-_24053994_24054049	0.874404	Hoxd11_Cdx1_Hoxc11	ENSMUST00000225431.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000188210.8|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224787.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225315.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225556.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223727.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223655.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224077.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224812.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224285.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000225471.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224232.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000223749.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	ENSMUST00000224025.2|Kcnma1|ENSMUSG00000063142.16|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm39_v1_chr2_-_140513320_140513377	0.865471	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056760.4|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr15_-_77129786_77129804	0.838855	Hoxd11_Cdx1_Hoxc11	ENSMUST00000228558.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr15_-_77129706_77129747	0.83335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000228361.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr3_+_82915031_82915175	0.831429	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048486.13|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain	ENSMUST00000194175.2|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain
mm39_v1_chr15_-_34356567_34356567	0.824279	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179647.2|9430069I07Rik|ENSMUSG00000094447.3|RIKEN cDNA 9430069I07 gene
mm39_v1_chr11_-_17161504_17161571	0.823579	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020317.8|Pno1|ENSMUSG00000020116.8|partner of NOB1 homolog
mm39_v1_chr16_+_88812172_88812172	0.819267	Hoxd11_Cdx1_Hoxc11	ENSMUST00000089106.4|Gm10229|ENSMUSG00000068075.4|predicted gene 10229
mm39_v1_chr16_+_29884153_29884169	0.815259	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023171.8|Hes1|ENSMUSG00000022528.9|hes family bHLH transcription factor 1
mm39_v1_chr19_-_6117815_6117896	0.813573	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162575.8|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000159084.8|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000161718.8|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000162810.8|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000025713.12|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000113543.9|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000160417.8|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2	ENSMUST00000161528.2|Tm7sf2|ENSMUSG00000024799.17|transmembrane 7 superfamily member 2
mm39_v1_chr13_+_81031512_81031543	0.812218	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr16_+_41353360_41353429	0.811963	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr19_-_7319211_7319228	0.806664	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171393.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr6_-_139478919_139478974	0.786297	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170650.3|Rergl|ENSMUSG00000092164.3|RERG/RAS-like
mm39_v1_chr2_-_26012751_26012850	0.766675	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140993.2|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	ENSMUST00000028300.6|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chrX_-_7185529_7185624	0.762797	Hoxd11_Cdx1_Hoxc11	ENSMUST00000128319.2|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr7_-_141014477_141014517	0.748114	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106007.10|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000150026.2|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000202840.4|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000133206.9|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr4_+_118217179_118217227	0.735903	Hoxd11_Cdx1_Hoxc11	ENSMUST00000006562.6|Hyi|ENSMUSG00000006395.17|hydroxypyruvate isomerase (putative)
mm39_v1_chr19_+_44481901_44481920	0.717976	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041163.5|Wnt8b|ENSMUSG00000036961.6|wingless-type MMTV integration site family, member 8B
mm39_v1_chr17_-_36208265_36208333	0.710666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148721.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene
mm39_v1_chr2_+_29678248_29678314	0.692249	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028137.10|Coq4|ENSMUSG00000026798.11|coenzyme Q4	ENSMUST00000148791.2|Coq4|ENSMUSG00000026798.11|coenzyme Q4
mm39_v1_chr17_+_8502682_8502693	0.689775	Hoxd11_Cdx1_Hoxc11	ENSMUST00000124023.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr12_+_55349422_55349569	0.685617	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021411.15|Prorp|ENSMUSG00000021023.15|protein only RNase P catalytic subunit
mm39_v1_chr10_-_30494333_30494390	0.68384	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019925.7|Hint3|ENSMUSG00000019791.13|histidine triad nucleotide binding protein 3
mm39_v1_chr15_-_41733099_41733123	0.674644	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054742.7|Abra|ENSMUSG00000042895.7|actin-binding Rho activating protein
mm39_v1_chr18_-_47466378_47466439	0.6724	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126684.2|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000156422.8|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr13_+_46427176_46427197	0.669637	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076622.4|Stmnd1|ENSMUSG00000063529.4|stathmin domain containing 1
mm39_v1_chr10_-_53952686_53952719	0.667537	Hoxd11_Cdx1_Hoxc11	ENSMUST00000220088.2|Man1a|ENSMUSG00000003746.17|mannosidase 1, alpha
mm39_v1_chr10_+_23814470_23814470	0.665071	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079134.5|Taar2|ENSMUSG00000059763.5|trace amine-associated receptor 2
mm39_v1_chr13_+_22220000_22220040	0.649761	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110455.4|H2bc12|ENSMUSG00000062727.5|H2B clustered histone 12
mm39_v1_chr16_-_58459102_58459102	0.642996	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053249.9|Ftdc2|ENSMUSG00000055789.8|ferritin domain containing 2
mm39_v1_chr14_-_7750938_7750988	0.633576	Hoxd11_Cdx1_Hoxc11	ENSMUST00000223740.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000224049.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000224672.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000224752.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000223695.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000224333.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7	ENSMUST00000224952.3|Slc4a7|ENSMUSG00000021733.12|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm39_v1_chr15_-_101422054_101422054	0.63257	Hoxd11_Cdx1_Hoxc11	ENSMUST00000230067.3|Gm49425|ENSMUSG00000116336.3|predicted gene, 49425
mm39_v1_chr2_+_74552322_74552418	0.631021	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047904.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chrX_+_81992467_81992521	0.629143	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr19_-_45224251_45224251	0.627558	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099401.6|Lbx1|ENSMUSG00000025216.10|ladybird homeobox 1
mm39_v1_chr13_-_3995349_3995349	0.605112	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058610.8|Ucn3|ENSMUSG00000044988.8|urocortin 3
mm39_v1_chr3_+_122298308_122298324	0.601085	Hoxd11_Cdx1_Hoxc11	ENSMUST00000199358.2|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr9_-_101076198_101076278	0.583352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066773.9|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr16_-_35589726_35589755	0.575029	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023554.9|Slc49a4|ENSMUSG00000022848.9|solute carrier family 49 member 4
mm39_v1_chr3_+_89366425_89366485	0.555296	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029564.12|Pmvk|ENSMUSG00000027952.17|phosphomevalonate kinase
mm39_v1_chr2_+_145627900_145628073	0.549898	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chr1_-_144124787_144124806	0.547894	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185714.2|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr5_-_25305621_25305655	0.542557	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030784.14|Prkag2|ENSMUSG00000028944.15|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm39_v1_chr4_+_134042423_134042437	0.542389	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105875.8|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63	ENSMUST00000030638.7|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63
mm39_v1_chr9_-_123507847_123507915	0.541587	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170591.2|Slc6a20a|ENSMUSG00000036814.14|solute carrier family 6 (neurotransmitter transporter), member 20A	ENSMUST00000171647.9|Slc6a20a|ENSMUSG00000036814.14|solute carrier family 6 (neurotransmitter transporter), member 20A
mm39_v1_chr2_+_58457370_58457421	0.536835	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071543.12|Upp2|ENSMUSG00000026839.18|uridine phosphorylase 2
mm39_v1_chr17_+_85264134_85264173	0.530542	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112305.10|Ppm1b|ENSMUSG00000061130.14|protein phosphatase 1B, magnesium dependent, beta isoform
mm39_v1_chr19_+_40078132_40078167	0.528961	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068094.13|Cyp2c50|ENSMUSG00000054827.13|cytochrome P450, family 2, subfamily c, polypeptide 50	ENSMUST00000080171.3|Cyp2c50|ENSMUSG00000054827.13|cytochrome P450, family 2, subfamily c, polypeptide 50
mm39_v1_chr17_+_14087827_14087878	0.523573	Hoxd11_Cdx1_Hoxc11	ENSMUST00000239324.2|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor
mm39_v1_chr13_-_99481160_99481214	0.512902	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022153.8|Ptcd2|ENSMUSG00000021650.8|pentatricopeptide repeat domain 2
mm39_v1_chr11_-_97591150_97591323	0.512511	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018681.14|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr16_-_19385631_19385631	0.509804	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090062.2|Olfr169|ENSMUSG00000068535.3|olfactory receptor 169
mm39_v1_chr17_+_8502594_8502661	0.508124	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr2_+_83642910_83642987	0.504845	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr3_-_104684798_104684863	0.504298	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139783.2|Tafa3|ENSMUSG00000055865.9|TAFA chemokine like family member 3
mm39_v1_chr5_-_25047577_25047623	0.494816	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030787.9|Rheb|ENSMUSG00000028945.10|Ras homolog enriched in brain
mm39_v1_chrM_+_3906_3942	0.482844	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr16_+_27126239_27126400	0.46367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066852.9|Ostn|ENSMUSG00000052276.9|osteocrin
mm39_v1_chrM_+_7758_7775	0.445133	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr1_+_53100796_53100816	0.43617	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027269.7|Mstn|ENSMUSG00000026100.7|myostatin	ENSMUST00000191197.2|Mstn|ENSMUSG00000026100.7|myostatin
mm39_v1_chr19_-_56536443_56536480	0.433089	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182059.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr6_+_15196950_15197041	0.432193	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr17_-_71153283_71153321	0.430109	Hoxd11_Cdx1_Hoxc11	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr7_-_126807581_126807676	0.424372	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120705.3|Tbc1d10b|ENSMUSG00000042492.13|TBC1 domain family, member 10b
mm39_v1_chr2_+_111327525_111327525	0.420886	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121345.4|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chr13_+_93810911_93810959	0.41484	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048001.8|Dmgdh|ENSMUSG00000042102.8|dimethylglycine dehydrogenase precursor
mm39_v1_chr3_+_5283606_5283621	0.391183	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026284.13|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr16_+_59227695_59227695	0.386204	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114341.4|Gabrr3|ENSMUSG00000074991.6|gamma-aminobutyric acid (GABA) receptor, rho 3
mm39_v1_chr13_-_22219738_22219774	0.378237	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091742.6|H2ac12|ENSMUSG00000069302.6|H2A clustered histone 12
mm39_v1_chr12_+_118811306_118811321	0.366536	Hoxd11_Cdx1_Hoxc11	ENSMUST00000223305.2|Sp8|ENSMUSG00000048562.8|trans-acting transcription factor 8
mm39_v1_chr3_+_5283577_5283604	0.36256	Hoxd11_Cdx1_Hoxc11	ENSMUST00000175866.8|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr7_-_115459082_115459098	0.361768	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206123.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr9_+_55448432_55448493	0.356238	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034869.11|Isl2|ENSMUSG00000032318.13|insulin related protein 2 (islet 2)
mm39_v1_chr3_+_102981326_102981349	0.353464	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090715.13|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1	ENSMUST00000155034.6|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr6_-_145379805_145379816	0.352278	Hoxd11_Cdx1_Hoxc11	ENSMUST00000149666.2|Lmntd1|ENSMUSG00000054966.14|lamin tail domain containing 1
mm39_v1_chr5_-_108017019_108017041	0.351167	Hoxd11_Cdx1_Hoxc11	ENSMUST00000128723.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000124034.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr8_-_25528972_25528986	0.343264	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084031.6|Htra4|ENSMUSG00000037406.8|HtrA serine peptidase 4
mm39_v1_chr13_-_99027482_99027543	0.343035	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179301.8|Tnpo1|ENSMUSG00000009470.18|transportin 1	ENSMUST00000179271.2|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr14_+_56208885_56208885	0.337469	Hoxd11_Cdx1_Hoxc11	ENSMUST00000089555.3|Cma2|ENSMUSG00000068289.7|chymase 2, mast cell
mm39_v1_chr16_-_19425453_19425453	0.336804	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078603.3|Olfr170|ENSMUSG00000062245.5|olfactory receptor 170	ENSMUST00000218837.2|Olfr170|ENSMUSG00000062245.5|olfactory receptor 170
mm39_v1_chr7_+_108143734_108143740	0.336254	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078162.4|Olfr503|ENSMUSG00000060759.5|olfactory receptor 503	ENSMUST00000211693.2|Olfr503|ENSMUSG00000060759.5|olfactory receptor 503
mm39_v1_chr16_+_38405718_38405870	0.335772	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165631.2|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr11_-_99996452_99996471	0.334831	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107416.3|Krt36|ENSMUSG00000020916.9|keratin 36
mm39_v1_chr1_-_130643471_130643589	0.333757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066863.13|Pfkfb2|ENSMUSG00000026409.15|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	ENSMUST00000169659.8|Pfkfb2|ENSMUSG00000026409.15|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm39_v1_chr11_-_24025054_24025054	0.325866	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068360.2|A830031A19Rik|ENSMUSG00000055010.2|RIKEN cDNA A830031A19 gene
mm39_v1_chrX_-_48823936_48823936	0.322728	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215373.3|Olfr1321|ENSMUSG00000067971.6|olfactory receptor 1321
mm39_v1_chr19_-_40982576_40982591	0.320775	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117695.8|Blnk|ENSMUSG00000061132.14|B cell linker
mm39_v1_chr9_+_109641348_109641371	0.318661	Hoxd11_Cdx1_Hoxc11	ENSMUST00000200555.5|Spink8|ENSMUSG00000050074.13|serine peptidase inhibitor, Kazal type 8
mm39_v1_chr8_+_15107646_15107660	0.313754	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033842.4|Myom2|ENSMUSG00000031461.5|myomesin 2
mm39_v1_chr18_-_35631914_35631982	0.309703	Hoxd11_Cdx1_Hoxc11	ENSMUST00000236007.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000237896.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235778.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235524.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235691.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000235619.2|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	ENSMUST00000025215.10|Sil1|ENSMUSG00000024357.11|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm39_v1_chr4_-_81360993_81361073	0.307763	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr17_-_65901946_65901985	0.306232	Hoxd11_Cdx1_Hoxc11	ENSMUST00000232686.2|Vapa|ENSMUSG00000024091.10|vesicle-associated membrane protein, associated protein A
mm39_v1_chrM_+_7779_7927	0.295757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr7_-_30428930_30428981	0.287499	Hoxd11_Cdx1_Hoxc11	ENSMUST00000207296.2|Tmem147|ENSMUSG00000006315.10|transmembrane protein 147	ENSMUST00000006478.10|Tmem147|ENSMUSG00000006315.10|transmembrane protein 147
mm39_v1_chr11_-_99457456_99457471	0.28353	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055502.5|Krtap3-1|ENSMUSG00000047564.5|keratin associated protein 3-1
mm39_v1_chr2_+_111329683_111329683	0.278888	Hoxd11_Cdx1_Hoxc11	ENSMUST00000219064.3|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chr10_+_93476903_93476918	0.27286	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020204.5|Ntn4|ENSMUSG00000020019.5|netrin 4
mm39_v1_chr5_+_18167547_18167547	0.26663	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030561.9|Gnat3|ENSMUSG00000028777.9|guanine nucleotide binding protein, alpha transducing 3
mm39_v1_chrX_+_104807868_104807885	0.258289	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr2_+_152360167_152360190	0.253195	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121912.2|Defb28|ENSMUSG00000074679.4|defensin beta 28
mm39_v1_chr2_+_111355548_111355548	0.242225	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr18_+_4994600_4994623	0.241615	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140448.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr1_+_58484310_58484467	0.239863	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087521.13|Nif3l1|ENSMUSG00000026036.18|Ngg1 interacting factor 3-like 1 (S. pombe)	ENSMUST00000114337.8|Nif3l1|ENSMUSG00000026036.18|Ngg1 interacting factor 3-like 1 (S. pombe)
mm39_v1_chr4_-_87951565_87951610	0.239581	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078090.12|Mllt3|ENSMUSG00000028496.18|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
mm39_v1_chr7_-_136916123_136916174	0.234124	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr10_-_33920289_33920295	0.231366	Hoxd11_Cdx1_Hoxc11	ENSMUST00000218239.2|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr2_+_119039456_119039517	0.229983	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102519.5|Zfyve19|ENSMUSG00000068580.12|zinc finger, FYVE domain containing 19
mm39_v1_chr7_+_119206233_119206256	0.226652	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126367.8|Acsm1|ENSMUSG00000033533.15|acyl-CoA synthetase medium-chain family member 1
mm39_v1_chr1_+_6805048_6805100	0.220309	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139838.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr19_-_56536646_56536696	0.214467	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182276.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr10_-_12689345_12689359	0.213695	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217899.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr15_+_6451721_6451813	0.20084	Hoxd11_Cdx1_Hoxc11	ENSMUST00000163082.2|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr16_+_93885775_93885793	0.191428	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072182.9|Sim2|ENSMUSG00000062713.9|single-minded family bHLH transcription factor 2
mm39_v1_chr2_-_89969539_89969539	0.186031	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099755.5|Olfr32|ENSMUSG00000075066.8|olfactory receptor 32
mm39_v1_chr1_-_65090278_65090309	0.18452	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161960.2|Cryge|ENSMUSG00000070870.7|crystallin, gamma E	ENSMUST00000087359.6|Cryge|ENSMUSG00000070870.7|crystallin, gamma E
mm39_v1_chr10_+_129153986_129153986	0.184406	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chrX_-_103244728_103244773	0.182725	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056502.7|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr2_+_87574098_87574098	0.181322	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214723.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr2_+_173579285_173579304	0.176555	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067530.6|Vapb|ENSMUSG00000054455.6|vesicle-associated membrane protein, associated protein B and C
mm39_v1_chr2_+_36883839_36883839	0.175932	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213218.2|Olfr357|ENSMUSG00000055838.5|olfactory receptor 357
mm39_v1_chr19_-_46384158_46384199	0.17228	Hoxd11_Cdx1_Hoxc11	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chrY_+_17093873_17093879	0.172273	Hoxd11_Cdx1_Hoxc11	ENSMUST00000191358.2|Gm20877|ENSMUSG00000095520.3|predicted gene, 20877	ENSMUST00000100105.5|Gm20877|ENSMUSG00000095520.3|predicted gene, 20877
mm39_v1_chr19_+_56536685_56536716	0.167707	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071423.7|Nhlrc2|ENSMUSG00000025078.10|NHL repeat containing 2
mm39_v1_chr5_+_88603847_88603870	0.162745	Hoxd11_Cdx1_Hoxc11	ENSMUST00000198265.5|Ambn|ENSMUSG00000029288.12|ameloblastin	ENSMUST00000031226.9|Ambn|ENSMUSG00000029288.12|ameloblastin
mm39_v1_chr14_-_63221950_63221965	0.158328	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100493.3|Defb48|ENSMUSG00000075574.3|defensin beta 48
mm39_v1_chr2_+_111311164_111311164	0.155449	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120021.5|Olfr1289|ENSMUSG00000061195.9|olfactory receptor 1289
mm39_v1_chr11_-_88608958_88609022	0.152018	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107908.2|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr7_-_104246386_104246386	0.148217	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057385.5|Olfr655|ENSMUSG00000051182.6|olfactory receptor 655
mm39_v1_chr2_-_119039247_119039283	0.144467	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038439.4|Dnajc17|ENSMUSG00000034278.4|DnaJ heat shock protein family (Hsp40) member C17
mm39_v1_chr13_-_21967540_21967576	0.143729	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189457.2|H3c11|ENSMUSG00000101972.2|H3 clustered histone 11
mm39_v1_chr4_+_109092829_109092829	0.141785	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030285.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr6_+_8259288_8259312	0.140669	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159335.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr16_+_42727926_42728047	0.139157	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr7_-_100232276_100232332	0.138086	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152876.3|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000150042.8|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000132888.9|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48
mm39_v1_chr7_-_45109262_45109312	0.136275	Hoxd11_Cdx1_Hoxc11	ENSMUST00000094434.13|Ftl1|ENSMUSG00000050708.17|ferritin light polypeptide 1
mm39_v1_chr8_+_107757847_107757862	0.133469	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr1_+_81054921_81054969	0.131512	Hoxd11_Cdx1_Hoxc11	ENSMUST00000123720.8|Nyap2|ENSMUSG00000054976.15|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm39_v1_chr14_+_33775115_33775134	0.124265	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227979.2|Antxrl|ENSMUSG00000047441.5|anthrax toxin receptor-like
mm39_v1_chr9_-_40257586_40257634	0.12299	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121357.8|Gramd1b|ENSMUSG00000040111.18|GRAM domain containing 1B
mm39_v1_chr2_+_85409559_85409559	0.121902	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077075.5|Olfr996|ENSMUSG00000111179.2|olfactory receptor 996
mm39_v1_chr14_-_14371476_14371577	0.118605	Hoxd11_Cdx1_Hoxc11	ENSMUST00000225653.2|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000112689.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase	ENSMUST00000036682.9|Pxk|ENSMUSG00000033885.16|PX domain containing serine/threonine kinase
mm39_v1_chr16_-_58850641_58850654	0.114849	Hoxd11_Cdx1_Hoxc11	ENSMUST00000216415.2|Olfr186|ENSMUSG00000047960.5|olfactory receptor 186	ENSMUST00000206463.3|Olfr186|ENSMUSG00000047960.5|olfactory receptor 186
mm39_v1_chrY_+_12381981_12381981	0.113488	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189550.2|Gm20812|ENSMUSG00000095508.3|predicted gene, 20812
mm39_v1_chr7_-_45109075_45109149	0.10975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000210864.2|Ftl1|ENSMUSG00000050708.17|ferritin light polypeptide 1
mm39_v1_chr19_-_11816583_11816583	0.106439	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214887.2|Olfr1417|ENSMUSG00000048292.4|olfactory receptor 1417
mm39_v1_chr11_+_117375194_117375194	0.102885	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092394.4|Gm11733|ENSMUSG00000069588.4|predicted gene 11733
mm39_v1_chr11_-_110142565_110142602	0.0972113	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.14|Abca6|ENSMUSG00000044749.14|ATP-binding cassette, sub-family A (ABC1), member 6
mm39_v1_chr5_+_145141333_145141478	0.0924022	Hoxd11_Cdx1_Hoxc11	ENSMUST00000085671.10|Zkscan5|ENSMUSG00000055991.16|zinc finger with KRAB and SCAN domains 5	ENSMUST00000031601.8|Zkscan5|ENSMUSG00000055991.16|zinc finger with KRAB and SCAN domains 5
mm39_v1_chr17_+_29487881_29488024	0.0918371	Hoxd11_Cdx1_Hoxc11	ENSMUST00000234845.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235038.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235050.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000120346.9|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234377.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235074.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000235040.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234256.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004	ENSMUST00000234459.2|BC004004|ENSMUSG00000052712.18|cDNA sequence BC004004
mm39_v1_chr11_-_89587671_89587711	0.0917426	Hoxd11_Cdx1_Hoxc11	ENSMUST00000128717.9|Ankfn1|ENSMUSG00000047773.16|ankyrin-repeat and fibronectin type III domain containing 1
mm39_v1_chr7_+_43079512_43079538	0.0915678	Hoxd11_Cdx1_Hoxc11	ENSMUST00000004732.7|Lim2|ENSMUSG00000118560.2|lens intrinsic membrane protein 2
mm39_v1_chr2_+_152511381_152511459	0.0877092	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125366.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000109825.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000089059.9|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000079247.4|H13|ENSMUSG00000019188.17|histocompatibility 13
mm39_v1_chr13_-_63545981_63546075	0.0875744	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160735.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr1_-_120197979_120198153	0.0874297	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112639.8|Steap3|ENSMUSG00000026389.17|STEAP family member 3
mm39_v1_chr3_+_103482591_103482694	0.0869767	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090697.11|Syt6|ENSMUSG00000027849.20|synaptotagmin VI	ENSMUST00000239027.2|Syt6|ENSMUSG00000027849.20|synaptotagmin VI
mm39_v1_chr10_+_69623262_69623288	0.0838722	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183240.2|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr16_-_95792090_95792160	0.0757112	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233128.2|Psmg1|ENSMUSG00000022913.17|proteasome (prosome, macropain) assembly chaperone 1	ENSMUST00000023630.16|Psmg1|ENSMUSG00000022913.17|proteasome (prosome, macropain) assembly chaperone 1
mm39_v1_chr14_+_45567245_45567268	0.0737524	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022380.9|Psmc6|ENSMUSG00000021832.9|proteasome (prosome, macropain) 26S subunit, ATPase, 6
mm39_v1_chr5_-_108943211_108943241	0.063598	Hoxd11_Cdx1_Hoxc11	ENSMUST00000004943.2|Tmed11|ENSMUSG00000004821.2|transmembrane p24 trafficking protein 11
mm39_v1_chr6_+_95094721_95094938	0.0613961	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr17_-_37523969_37524009	0.0571792	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chrX_+_20230720_20230864	0.0558312	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033372.13|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115391.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115387.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog
mm39_v1_chr4_+_102111936_102111959	0.054076	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106907.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr3_-_89257266_89257308	0.0476516	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107446.8|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000074582.7|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000107448.9|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)	ENSMUST00000029676.12|Adam15|ENSMUSG00000028041.18|a disintegrin and metallopeptidase domain 15 (metargidin)
mm39_v1_chr4_-_14826587_14826606	0.0466555	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117268.9|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B	ENSMUST00000236953.2|Otud6b|ENSMUSG00000040550.18|OTU domain containing 6B
mm39_v1_chr1_+_82817794_82817893	0.0463666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186043.2|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr7_-_33929667_33929704	0.0458441	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206415.2|Gpi1|ENSMUSG00000036427.6|glucose-6-phosphate isomerase 1
mm39_v1_chr7_-_12468931_12468931	0.0413058	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233304.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233373.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233874.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233902.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56
mm39_v1_chr10_-_12490424_12490575	0.0380526	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217994.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr1_+_150195158_150195200	0.0271874	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165062.8|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000191228.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000186572.7|Pdc|ENSMUSG00000006007.15|phosducin	ENSMUST00000185698.2|Pdc|ENSMUSG00000006007.15|phosducin
mm39_v1_chr2_+_181408833_181408866	0.0271159	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108756.8|Myt1|ENSMUSG00000010505.17|myelin transcription factor 1
mm39_v1_chr7_-_81143631_81143703	0.0256254	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082090.15|Ap3b2|ENSMUSG00000062444.16|adaptor-related protein complex 3, beta 2 subunit
mm39_v1_chrX_-_50889955_50890110	0.0200485	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069509.4|Usp26|ENSMUSG00000055780.11|ubiquitin specific peptidase 26	ENSMUST00000114869.8|Usp26|ENSMUSG00000055780.11|ubiquitin specific peptidase 26
mm39_v1_chr5_-_6926523_6926523	0.0198882	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164784.2|Zfp804b|ENSMUSG00000092094.6|zinc finger protein 804B
mm39_v1_chr2_-_31735937_31736017	0.0177563	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028188.8|Fibcd1|ENSMUSG00000026841.8|fibrinogen C domain containing 1
mm39_v1_chr3_-_64197130_64197130	0.0140927	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233531.2|Vmn2r3|ENSMUSG00000091572.10|vomeronasal 2, receptor 3	ENSMUST00000176328.9|Vmn2r3|ENSMUSG00000091572.10|vomeronasal 2, receptor 3
mm39_v1_chr10_+_102376109_102376142	0.0114239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055355.6|Rassf9|ENSMUSG00000044921.6|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
mm39_v1_chr13_-_23302396_23302396	0.0104705	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr3_+_121838076_121838118	0.00953062	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013995.13|Abca4|ENSMUSG00000028125.15|ATP-binding cassette, sub-family A (ABC1), member 4
mm39_v1_chr3_-_154036180_154036296	0.00279694	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
