mm39_v1_chr15_+_6673167_6673187	5.34313	Hoxd9	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr1_-_138103021_138103049	3.15468	Hoxd9	ENSMUST00000182755.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000193650.2|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000182283.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C
mm39_v1_chr1_-_138102972_138103012	3.11114	Hoxd9	ENSMUST00000195533.6|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C	ENSMUST00000183301.8|Ptprc|ENSMUSG00000026395.17|protein tyrosine phosphatase, receptor type, C
mm39_v1_chr14_+_66043281_66043346	2.88549	Hoxd9	ENSMUST00000022612.10|Pbk|ENSMUSG00000022033.10|PDZ binding kinase
mm39_v1_chr19_-_57185988_57186063	2.46984	Hoxd9	ENSMUST00000099294.9|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr3_-_14843512_14843526	2.06077	Hoxd9	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chr16_-_75706161_75706200	2.04557	Hoxd9	ENSMUST00000114239.9|Samsn1|ENSMUSG00000022876.19|SAM domain, SH3 domain and nuclear localization signals, 1
mm39_v1_chr3_+_60503051_60503132	1.93518	Hoxd9	ENSMUST00000192757.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000193518.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000195817.3|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr13_+_49697919_49698009	1.84546	Hoxd9	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chr19_-_57185928_57185969	1.8329	Hoxd9	ENSMUST00000111544.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr4_-_129472328_129472353	1.8304	Hoxd9	ENSMUST00000052835.9|Fam167b|ENSMUSG00000050493.9|family with sequence similarity 167, member B
mm39_v1_chr6_+_41095752_41095785	1.79133	Hoxd9	ENSMUST00000103269.3|Trbv12-2|ENSMUSG00000094525.3|T cell receptor beta, variable 12-2
mm39_v1_chr19_-_57185861_57185893	1.70311	Hoxd9	ENSMUST00000111550.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr3_-_144525255_144525255	1.68248	Hoxd9	ENSMUST00000029929.12|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr1_-_82746169_82746186	1.67011	Hoxd9	ENSMUST00000027331.3|Tm4sf20|ENSMUSG00000026149.3|transmembrane 4 L six family member 20
mm39_v1_chr14_+_54000594_54000642	1.62515	Hoxd9	ENSMUST00000103589.6|Trav14-3|ENSMUSG00000094212.4|T cell receptor alpha variable 14-3
mm39_v1_chr15_-_98832403_98832467	1.60982	Hoxd9	ENSMUST00000077577.8|Tuba1b|ENSMUSG00000023004.9|tubulin, alpha 1B
mm39_v1_chr10_-_18890281_18890337	1.60381	Hoxd9	ENSMUST00000146388.2|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr7_-_119078330_119078408	1.54427	Hoxd9	ENSMUST00000207460.2|Umod|ENSMUSG00000030963.7|uromodulin
mm39_v1_chr4_-_94538329_94538366	1.43012	Hoxd9	ENSMUST00000107101.2|Lrrc19|ENSMUSG00000049799.14|leucine rich repeat containing 19
mm39_v1_chr12_+_117807224_117807250	1.42125	Hoxd9	ENSMUST00000021592.16|Cdca7l|ENSMUSG00000021175.16|cell division cycle associated 7 like
mm39_v1_chr6_+_70192384_70192389	1.36199	Hoxd9	ENSMUST00000103383.3|Igkv6-25|ENSMUSG00000094930.3|immunoglobulin kappa chain variable 6-25
mm39_v1_chr5_-_21087023_21087122	1.34527	Hoxd9	ENSMUST00000118174.8|Phtf2|ENSMUSG00000039987.16|putative homeodomain transcription factor 2
mm39_v1_chr2_+_14179324_14179357	1.26678	Hoxd9	ENSMUST00000077517.9|Tmem236|ENSMUSG00000061531.9|transmembrane protein 236
mm39_v1_chr6_+_149226891_149226956	1.26153	Hoxd9	ENSMUST00000189837.2|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chrX_-_133442596_133442649	1.20921	Hoxd9	ENSMUST00000054213.5|Timm8a1|ENSMUSG00000048007.5|translocase of inner mitochondrial membrane 8A1
mm39_v1_chr3_-_144511566_144511566	1.12296	Hoxd9	ENSMUST00000199029.2|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chrX_+_56257374_56257514	1.1094	Hoxd9	ENSMUST00000033466.2|Cd40lg|ENSMUSG00000031132.2|CD40 ligand
mm39_v1_chr16_-_48232770_48232785	1.09582	Hoxd9	ENSMUST00000212197.2|Gm5485|ENSMUSG00000110573.2|predicted gene 5485
mm39_v1_chr9_-_64080161_64080201	1.08879	Hoxd9	ENSMUST00000176299.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000130127.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000176794.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein	ENSMUST00000177045.8|Zwilch|ENSMUSG00000032400.19|zwilch kinetochore protein
mm39_v1_chr5_-_87572060_87572064	1.07239	Hoxd9	ENSMUST00000072818.6|Ugt2b38|ENSMUSG00000061906.6|UDP glucuronosyltransferase 2 family, polypeptide B38
mm39_v1_chr14_+_74973081_74973103	1.01442	Hoxd9	ENSMUST00000177283.8|Esd|ENSMUSG00000021996.17|esterase D/formylglutathione hydrolase
mm39_v1_chr12_-_118265103_118265162	1.00942	Hoxd9	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr6_+_122530758_122530775	0.996632	Hoxd9	ENSMUST00000043301.14|Aicda|ENSMUSG00000040627.15|activation-induced cytidine deaminase
mm39_v1_chr6_-_68840015_68840032	0.992662	Hoxd9	ENSMUST00000103336.2|Igkv1-88|ENSMUSG00000076535.2|immunoglobulin kappa chain variable 1-88
mm39_v1_chr1_-_171854818_171854880	0.989007	Hoxd9	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr7_-_112987770_112987785	0.980678	Hoxd9	ENSMUST00000079793.7|Pth|ENSMUSG00000059077.7|parathyroid hormone
mm39_v1_chr6_+_38918327_38918342	0.931619	Hoxd9	ENSMUST00000160963.2|Tbxas1|ENSMUSG00000029925.14|thromboxane A synthase 1, platelet
mm39_v1_chr11_+_67061908_67062046	0.929067	Hoxd9	ENSMUST00000018641.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr14_+_53853772_53853772	0.919632	Hoxd9	ENSMUST00000180972.3|Trav12-2|ENSMUSG00000096656.7|T cell receptor alpha variable 12-2
mm39_v1_chr14_+_54453748_54453748	0.917334	Hoxd9	ENSMUST00000103736.2|Traj4|ENSMUSG00000076924.2|T cell receptor alpha joining 4
mm39_v1_chr7_+_89814713_89814756	0.906999	Hoxd9	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chrX_+_41241049_41241072	0.893605	Hoxd9	ENSMUST00000128799.3|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr5_-_18054702_18054733	0.868146	Hoxd9	ENSMUST00000165232.8|Cd36|ENSMUSG00000002944.16|CD36 molecule
mm39_v1_chr3_-_75177378_75177392	0.860922	Hoxd9	ENSMUST00000039047.5|Serpini2|ENSMUSG00000034139.5|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm39_v1_chr2_-_84255602_84255755	0.859267	Hoxd9	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr6_-_69800923_69800955	0.852054	Hoxd9	ENSMUST00000103368.3|Igkv5-43|ENSMUSG00000094433.3|immunoglobulin kappa chain variable 5-43
mm39_v1_chr3_-_115923098_115923113	0.828963	Hoxd9	ENSMUST00000196449.5|Vcam1|ENSMUSG00000027962.15|vascular cell adhesion molecule 1
mm39_v1_chr5_+_18167547_18167547	0.826634	Hoxd9	ENSMUST00000030561.9|Gnat3|ENSMUSG00000028777.9|guanine nucleotide binding protein, alpha transducing 3
mm39_v1_chr6_-_87510200_87510246	0.824983	Hoxd9	ENSMUST00000113637.9|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25	ENSMUST00000071024.7|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25
mm39_v1_chr11_+_23234644_23234669	0.799712	Hoxd9	ENSMUST00000150750.3|Xpo1|ENSMUSG00000020290.15|exportin 1
mm39_v1_chr11_-_99482165_99482207	0.786723	Hoxd9	ENSMUST00000104930.2|Krtap1-3|ENSMUSG00000078131.2|keratin associated protein 1-3
mm39_v1_chr14_+_53859114_53859201	0.77614	Hoxd9	ENSMUST00000103657.6|Trav12-3|ENSMUSG00000095958.4|T cell receptor alpha variable 12-3
mm39_v1_chr6_+_83985684_83985749	0.761592	Hoxd9	ENSMUST00000203803.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000204591.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000113823.8|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000153860.4|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr7_-_84328553_84328609	0.717179	Hoxd9	ENSMUST00000069537.3|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207865.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000178385.9|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000208782.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr3_-_144555062_144555118	0.692656	Hoxd9	ENSMUST00000159989.2|Clca3b|ENSMUSG00000037033.10|chloride channel accessory 3B
mm39_v1_chrX_-_165992145_165992168	0.690835	Hoxd9	ENSMUST00000112176.8|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr17_-_78991691_78991781	0.684769	Hoxd9	ENSMUST00000145480.2|Strn|ENSMUSG00000024077.16|striatin, calmodulin binding protein
mm39_v1_chr9_+_32305259_32305281	0.679542	Hoxd9	ENSMUST00000172015.3|Kcnj1|ENSMUSG00000041248.10|potassium inwardly-rectifying channel, subfamily J, member 1
mm39_v1_chr3_+_35808269_35808288	0.673185	Hoxd9	ENSMUST00000029257.15|Atp11b|ENSMUSG00000037400.18|ATPase, class VI, type 11B
mm39_v1_chrX_+_55493325_55493325	0.668708	Hoxd9	ENSMUST00000079663.7|Gm2174|ENSMUSG00000058932.7|predicted gene 2174
mm39_v1_chr2_+_11176891_11176942	0.64011	Hoxd9	ENSMUST00000028118.9|Prkcq|ENSMUSG00000026778.14|protein kinase C, theta
mm39_v1_chr9_+_77959206_77959231	0.627747	Hoxd9	ENSMUST00000024104.9|Gcm1|ENSMUSG00000023333.9|glial cells missing homolog 1
mm39_v1_chr11_+_67061837_67061866	0.622982	Hoxd9	ENSMUST00000170159.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr1_-_154975376_154975382	0.613413	Hoxd9	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr1_-_86039692_86039707	0.599941	Hoxd9	ENSMUST00000027431.7|Htr2b|ENSMUSG00000026228.7|5-hydroxytryptamine (serotonin) receptor 2B
mm39_v1_chr4_-_112291169_112291190	0.596281	Hoxd9	ENSMUST00000058605.3|Skint9|ENSMUSG00000049972.5|selection and upkeep of intraepithelial T cells 9
mm39_v1_chr11_-_80030735_80030788	0.589578	Hoxd9	ENSMUST00000136996.2|Tefm|ENSMUSG00000046909.10|transcription elongation factor, mitochondrial
mm39_v1_chr18_+_42669322_42669358	0.581394	Hoxd9	ENSMUST00000236418.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr12_-_113589576_113589657	0.572301	Hoxd9	ENSMUST00000103446.2|Ighv5-6|ENSMUSG00000094951.2|immunoglobulin heavy variable 5-6
mm39_v1_chr2_-_76700830_76700955	0.567132	Hoxd9	ENSMUST00000138542.2|Ttn|ENSMUSG00000051747.16|titin
mm39_v1_chrX_+_132751729_132751878	0.566408	Hoxd9	ENSMUST00000033602.9|Tnmd|ENSMUSG00000031250.9|tenomodulin
mm39_v1_chr5_-_120950570_120950604	0.548615	Hoxd9	ENSMUST00000117193.8|Oas1c|ENSMUSG00000001166.18|2'-5' oligoadenylate synthetase 1C
mm39_v1_chr11_-_99996452_99996471	0.544727	Hoxd9	ENSMUST00000107416.3|Krt36|ENSMUSG00000020916.9|keratin 36
mm39_v1_chr9_+_43222104_43222145	0.544382	Hoxd9	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr6_+_67993691_67993702	0.543571	Hoxd9	ENSMUST00000103314.3|Igkv1-122|ENSMUSG00000095497.3|immunoglobulin kappa chain variable 1-122
mm39_v1_chr1_-_128030148_128030223	0.531616	Hoxd9	ENSMUST00000086614.12|Zranb3|ENSMUSG00000036086.17|zinc finger, RAN-binding domain containing 3
mm39_v1_chr14_+_54429118_54429118	0.526016	Hoxd9	ENSMUST00000103713.2|Traj28|ENSMUSG00000076901.2|T cell receptor alpha joining 28
mm39_v1_chr12_+_31488208_31488226	0.520709	Hoxd9	ENSMUST00000001254.6|Slc26a3|ENSMUSG00000001225.13|solute carrier family 26, member 3
mm39_v1_chrX_-_165992311_165992475	0.517403	Hoxd9	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr10_-_93727003_93727064	0.515164	Hoxd9	ENSMUST00000180840.8|Metap2|ENSMUSG00000036112.16|methionine aminopeptidase 2
mm39_v1_chr14_+_43951187_43951191	0.461965	Hoxd9	ENSMUST00000094051.6|Gm7324|ENSMUSG00000049235.9|predicted gene 7324
mm39_v1_chrM_+_11735_11751	0.457417	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chr13_-_100453124_100453124	0.451035	Hoxd9	ENSMUST00000042220.3|Naip6|ENSMUSG00000078942.11|NLR family, apoptosis inhibitory protein 6
mm39_v1_chr3_+_30656204_30656246	0.450198	Hoxd9	ENSMUST00000192715.6|Mynn|ENSMUSG00000037730.14|myoneurin
mm39_v1_chr1_-_97689263_97689391	0.44983	Hoxd9	ENSMUST00000171129.8|Ppip5k2|ENSMUSG00000040648.16|diphosphoinositol pentakisphosphate kinase 2
mm39_v1_chr19_+_56536685_56536716	0.447881	Hoxd9	ENSMUST00000071423.7|Nhlrc2|ENSMUSG00000025078.10|NHL repeat containing 2
mm39_v1_chr6_+_18848600_18848692	0.428893	Hoxd9	ENSMUST00000201141.3|Lsm8|ENSMUSG00000044155.12|LSM8 homolog, U6 small nuclear RNA associated
mm39_v1_chr6_-_41291634_41291649	0.422232	Hoxd9	ENSMUST00000064324.12|Try5|ENSMUSG00000036938.18|trypsin 5
mm39_v1_chr2_+_85648823_85648823	0.415399	Hoxd9	ENSMUST00000214416.2|Olfr1018|ENSMUSG00000043892.4|olfactory receptor 1018
mm39_v1_chr3_+_32490525_32490525	0.415149	Hoxd9	ENSMUST00000108242.2|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr1_-_144427302_144427302	0.412757	Hoxd9	ENSMUST00000184189.3|Rgs21|ENSMUSG00000098509.3|regulator of G-protein signalling 21
mm39_v1_chr5_-_69699932_69699963	0.412411	Hoxd9	ENSMUST00000202423.2|Yipf7|ENSMUSG00000029158.10|Yip1 domain family, member 7
mm39_v1_chr6_+_83985495_83985572	0.409991	Hoxd9	ENSMUST00000113821.8|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr7_+_127661807_127661818	0.400022	Hoxd9	ENSMUST00000064821.14|Itgam|ENSMUSG00000030786.19|integrin alpha M
mm39_v1_chrX_-_133652080_133652139	0.394016	Hoxd9	ENSMUST00000113194.8|Armcx6|ENSMUSG00000050394.15|armadillo repeat containing, X-linked 6
mm39_v1_chr12_-_118930130_118930156	0.385838	Hoxd9	ENSMUST00000035515.5|Abcb5|ENSMUSG00000072791.12|ATP-binding cassette, sub-family B (MDR/TAP), member 5
mm39_v1_chr13_-_21330037_21330037	0.38242	Hoxd9	ENSMUST00000216039.3|Olfr1368|ENSMUSG00000045474.8|olfactory receptor 1368
mm39_v1_chr9_-_18297277_18297364	0.381332	Hoxd9	ENSMUST00000166825.8|Naalad2|ENSMUSG00000043943.15|N-acetylated alpha-linked acidic dipeptidase 2
mm39_v1_chr7_+_30264835_30264858	0.369427	Hoxd9	ENSMUST00000043850.14|Igflr1|ENSMUSG00000036826.15|IGF-like family receptor 1
mm39_v1_chr12_+_59176506_59176541	0.366382	Hoxd9	ENSMUST00000175912.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000176892.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chrX_-_133652140_133652178	0.357583	Hoxd9	ENSMUST00000052431.12|Armcx6|ENSMUSG00000050394.15|armadillo repeat containing, X-linked 6
mm39_v1_chr16_+_29884153_29884169	0.34892	Hoxd9	ENSMUST00000023171.8|Hes1|ENSMUSG00000022528.9|hes family bHLH transcription factor 1
mm39_v1_chr1_+_180158035_180158058	0.347431	Hoxd9	ENSMUST00000070181.7|Itpkb|ENSMUSG00000038855.11|inositol 1,4,5-trisphosphate 3-kinase B
mm39_v1_chr2_-_87568666_87568666	0.342724	Hoxd9	ENSMUST00000099848.2|Olfr1138|ENSMUSG00000075149.3|olfactory receptor 1138
mm39_v1_chr7_+_120450406_120450417	0.342171	Hoxd9	ENSMUST00000143322.9|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase	ENSMUST00000106488.3|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase
mm39_v1_chr7_-_103320398_103320398	0.338898	Hoxd9	ENSMUST00000062144.4|Olfr624|ENSMUSG00000045780.4|olfactory receptor 624
mm39_v1_chr18_+_31922173_31922224	0.33498	Hoxd9	ENSMUST00000025106.5|Polr2d|ENSMUSG00000024258.5|polymerase (RNA) II (DNA directed) polypeptide D	ENSMUST00000234146.2|Polr2d|ENSMUSG00000024258.5|polymerase (RNA) II (DNA directed) polypeptide D
mm39_v1_chr3_-_129834788_129834855	0.333162	Hoxd9	ENSMUST00000168644.3|Sec24b|ENSMUSG00000001052.16|Sec24 related gene family, member B (S. cerevisiae)
mm39_v1_chr5_-_87402659_87402677	0.327932	Hoxd9	ENSMUST00000075858.4|Ugt2b37|ENSMUSG00000057425.4|UDP glucuronosyltransferase 2 family, polypeptide B37
mm39_v1_chr14_-_122202508_122202528	0.317349	Hoxd9	ENSMUST00000227267.2|Gpr183|ENSMUSG00000051212.9|G protein-coupled receptor 183
mm39_v1_chr8_-_84976330_84976364	0.31335	Hoxd9	ENSMUST00000019506.9|D8Ertd738e|ENSMUSG00000019362.9|DNA segment, Chr 8, ERATO Doi 738, expressed
mm39_v1_chr10_+_115405891_115405927	0.3122	Hoxd9	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr9_-_105973975_105973990	0.301118	Hoxd9	ENSMUST00000121963.3|Col6a4|ENSMUSG00000032572.10|collagen, type VI, alpha 4
mm39_v1_chr13_-_32960379_32960415	0.299754	Hoxd9	ENSMUST00000230119.2|Mylk4|ENSMUSG00000044951.18|myosin light chain kinase family, member 4
mm39_v1_chr5_-_100521343_100521393	0.294951	Hoxd9	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr9_-_38577138_38577138	0.285016	Hoxd9	ENSMUST00000076542.2|Olfr917|ENSMUSG00000063225.2|olfactory receptor 917
mm39_v1_chr5_-_62923463_62923615	0.280913	Hoxd9	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr5_-_65650269_65650403	0.279665	Hoxd9	ENSMUST00000121661.8|Smim14|ENSMUSG00000037822.13|small integral membrane protein 14
mm39_v1_chr6_+_41179484_41179484	0.278818	Hoxd9	ENSMUST00000195087.2|Trbv21|ENSMUSG00000076477.4|T cell receptor beta, variable 21
mm39_v1_chr3_+_20043315_20043329	0.276552	Hoxd9	ENSMUST00000173779.2|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr5_+_136982100_136982260	0.276156	Hoxd9	ENSMUST00000111094.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1	ENSMUST00000111097.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1
mm39_v1_chr5_-_86345729_86345760	0.274455	Hoxd9	ENSMUST00000031172.9|Gnrhr|ENSMUSG00000029255.9|gonadotropin releasing hormone receptor	ENSMUST00000113372.2|Gnrhr|ENSMUSG00000029255.9|gonadotropin releasing hormone receptor
mm39_v1_chr12_+_59176543_59176604	0.273244	Hoxd9	ENSMUST00000069430.15|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000177370.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr5_+_88523967_88523967	0.272891	Hoxd9	ENSMUST00000073363.2|Amtn|ENSMUSG00000029282.4|amelotin
mm39_v1_chr3_+_32490300_32490300	0.268119	Hoxd9	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr14_+_63284438_63284543	0.260089	Hoxd9	ENSMUST00000067990.8|Defb42|ENSMUSG00000054763.10|defensin beta 42	ENSMUST00000111203.2|Defb42|ENSMUSG00000054763.10|defensin beta 42
mm39_v1_chr1_-_140111018_140111070	0.259578	Hoxd9	ENSMUST00000192880.6|Cfh|ENSMUSG00000026365.16|complement component factor h	ENSMUST00000111977.8|Cfh|ENSMUSG00000026365.16|complement component factor h
mm39_v1_chr10_+_129153986_129153986	0.257517	Hoxd9	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr1_+_88128323_88128353	0.252102	Hoxd9	ENSMUST00000049289.9|Ugt1a2|ENSMUSG00000090171.2|UDP glucuronosyltransferase 1 family, polypeptide A2
mm39_v1_chr1_-_4430481_4430537	0.247561	Hoxd9	ENSMUST00000027032.6|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr8_-_62576140_62576157	0.238668	Hoxd9	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr14_-_56137697_56137717	0.234817	Hoxd9	ENSMUST00000111325.5|Sdr39u1|ENSMUSG00000022223.10|short chain dehydrogenase/reductase family 39U, member 1
mm39_v1_chr2_-_89779008_89779008	0.232793	Hoxd9	ENSMUST00000214846.2|Olfr1259|ENSMUSG00000068806.6|olfactory receptor 1259
mm39_v1_chr10_+_23952398_23952398	0.231463	Hoxd9	ENSMUST00000051133.6|Taar8a|ENSMUSG00000096442.2|trace amine-associated receptor 8A
mm39_v1_chr2_-_87524291_87524291	0.224212	Hoxd9	ENSMUST00000077471.5|Olfr1136|ENSMUSG00000075151.7|olfactory receptor 1136
mm39_v1_chr2_-_87543523_87543523	0.222912	Hoxd9	ENSMUST00000214209.2|Olfr1137|ENSMUSG00000075150.3|olfactory receptor 1137
mm39_v1_chr16_-_22847808_22847826	0.209727	Hoxd9	ENSMUST00000115349.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr10_-_81102740_81102770	0.205801	Hoxd9	ENSMUST00000046114.5|Mrpl54|ENSMUSG00000034932.5|mitochondrial ribosomal protein L54
mm39_v1_chr19_+_45433899_45433982	0.200979	Hoxd9	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr2_-_115895202_115895231	0.194988	Hoxd9	ENSMUST00000110906.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr5_-_120950549_120950560	0.194353	Hoxd9	ENSMUST00000125547.2|Oas1c|ENSMUSG00000001166.18|2'-5' oligoadenylate synthetase 1C
mm39_v1_chr3_-_106729898_106729898	0.189447	Hoxd9	ENSMUST00000059486.3|Olfr266|ENSMUSG00000043529.5|olfactory receptor 266
mm39_v1_chr4_-_137084973_137085033	0.187851	Hoxd9	ENSMUST00000030417.10|Cdc42|ENSMUSG00000006699.18|cell division cycle 42	ENSMUST00000051477.13|Cdc42|ENSMUSG00000006699.18|cell division cycle 42
mm39_v1_chr1_-_140111138_140111153	0.186546	Hoxd9	ENSMUST00000111976.9|Cfh|ENSMUSG00000026365.16|complement component factor h	ENSMUST00000066859.13|Cfh|ENSMUSG00000026365.16|complement component factor h
mm39_v1_chr14_-_75991903_75992003	0.183183	Hoxd9	ENSMUST00000049168.9|Cog3|ENSMUSG00000034893.10|component of oligomeric golgi complex 3
mm39_v1_chr1_+_106908709_106908715	0.182958	Hoxd9	ENSMUST00000027564.8|Serpinb13|ENSMUSG00000048775.11|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
mm39_v1_chr2_-_151586063_151586125	0.18238	Hoxd9	ENSMUST00000109869.2|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr4_-_43710231_43710255	0.178963	Hoxd9	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr4_-_73869071_73869089	0.175302	Hoxd9	ENSMUST00000095023.2|2310002L09Rik|ENSMUSG00000028396.6|RIKEN cDNA 2310002L09 gene	ENSMUST00000030101.4|2310002L09Rik|ENSMUSG00000028396.6|RIKEN cDNA 2310002L09 gene
mm39_v1_chr2_+_88470886_88470941	0.173869	Hoxd9	ENSMUST00000217379.2|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1	ENSMUST00000120598.3|Olfr1191-ps1|ENSMUSG00000081948.5|olfactory receptor 1191, pseudogene 1
mm39_v1_chr10_-_35587888_35587888	0.172674	Hoxd9	ENSMUST00000080898.4|Amd2|ENSMUSG00000063953.4|S-adenosylmethionine decarboxylase 2
mm39_v1_chr2_-_87467879_87467879	0.160738	Hoxd9	ENSMUST00000216082.2|Olfr1132|ENSMUSG00000068818.6|olfactory receptor 1132
mm39_v1_chr13_-_3995349_3995349	0.157003	Hoxd9	ENSMUST00000058610.8|Ucn3|ENSMUSG00000044988.8|urocortin 3
mm39_v1_chr1_+_167425953_167425978	0.146728	Hoxd9	ENSMUST00000015987.10|Rxrg|ENSMUSG00000015843.11|retinoid X receptor gamma
mm39_v1_chr2_+_111355548_111355548	0.144605	Hoxd9	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr11_-_55498559_55498650	0.134414	Hoxd9	ENSMUST00000108853.8|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit	ENSMUST00000075603.5|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit
mm39_v1_chr11_+_59503792_59503792	0.130648	Hoxd9	ENSMUST00000055276.6|Olfr225|ENSMUSG00000044061.8|olfactory receptor 225
mm39_v1_chr4_+_114020581_114020630	0.127896	Hoxd9	ENSMUST00000079915.10|Skint11|ENSMUSG00000057977.11|selection and upkeep of intraepithelial T cells 11	ENSMUST00000164297.8|Skint11|ENSMUSG00000057977.11|selection and upkeep of intraepithelial T cells 11
mm39_v1_chr2_+_86338805_86338805	0.125513	Hoxd9	ENSMUST00000076263.2|Olfr1076|ENSMUSG00000060742.2|olfactory receptor 1076
mm39_v1_chr8_+_85583611_85583665	0.118868	Hoxd9	ENSMUST00000003906.13|Farsa|ENSMUSG00000003808.19|phenylalanyl-tRNA synthetase, alpha subunit	ENSMUST00000109754.2|Farsa|ENSMUSG00000003808.19|phenylalanyl-tRNA synthetase, alpha subunit
mm39_v1_chr16_-_78887971_78887995	0.118392	Hoxd9	ENSMUST00000023566.11|Tmprss15|ENSMUSG00000022857.14|transmembrane protease, serine 15	ENSMUST00000060402.6|Tmprss15|ENSMUSG00000022857.14|transmembrane protease, serine 15
mm39_v1_chr15_+_91722458_91722468	0.118324	Hoxd9	ENSMUST00000109277.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C
mm39_v1_chr2_+_91357100_91357112	0.1161	Hoxd9	ENSMUST00000111338.10|Ckap5|ENSMUSG00000040549.17|cytoskeleton associated protein 5
mm39_v1_chr7_+_107679062_107679062	0.114034	Hoxd9	ENSMUST00000213601.2|Olfr481|ENSMUSG00000054236.7|olfactory receptor 481
mm39_v1_chr2_+_111311164_111311164	0.1115	Hoxd9	ENSMUST00000120021.5|Olfr1289|ENSMUSG00000061195.9|olfactory receptor 1289
mm39_v1_chr1_-_160079007_160079088	0.107891	Hoxd9	ENSMUST00000191909.6|Rabgap1l|ENSMUSG00000026721.17|RAB GTPase activating protein 1-like
mm39_v1_chr2_-_90123185_90123185	0.103746	Hoxd9	ENSMUST00000117141.4|Olfr1272|ENSMUSG00000075061.3|olfactory receptor 1272
mm39_v1_chr11_+_31823096_31823275	0.102926	Hoxd9	ENSMUST00000155278.2|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr15_+_91722524_91722539	0.102637	Hoxd9	ENSMUST00000109276.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000088555.10|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000100293.9|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000239545.1|ENSMUSG00000118670.1|ENSMUSG00000118670.1|mucin 19	ENSMUST00000126508.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C
mm39_v1_chr3_+_93052089_93052106	0.10068	Hoxd9	ENSMUST00000107300.7|Crnn|ENSMUSG00000078657.7|cornulin	ENSMUST00000195515.2|Crnn|ENSMUSG00000078657.7|cornulin
mm39_v1_chr5_-_86521273_86521285	0.0997881	Hoxd9	ENSMUST00000031175.12|Tmprss11d|ENSMUSG00000061259.12|transmembrane protease, serine 11d
mm39_v1_chr7_-_10011933_10011933	0.0982277	Hoxd9	ENSMUST00000227719.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228622.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228086.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66
mm39_v1_chr2_-_89195205_89195209	0.0978545	Hoxd9	ENSMUST00000111543.2|Olfr1234|ENSMUSG00000075090.5|olfactory receptor 1234	ENSMUST00000137692.3|Olfr1234|ENSMUSG00000075090.5|olfactory receptor 1234
mm39_v1_chr19_-_13828056_13828056	0.0977956	Hoxd9	ENSMUST00000208493.3|Olfr1501|ENSMUSG00000057270.4|olfactory receptor 1501
mm39_v1_chr16_-_22847760_22847775	0.0966804	Hoxd9	ENSMUST00000039338.13|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr13_-_81859056_81859132	0.0962762	Hoxd9	ENSMUST00000161920.2|Polr3g|ENSMUSG00000035834.12|polymerase (RNA) III (DNA directed) polypeptide G	ENSMUST00000048993.12|Polr3g|ENSMUSG00000035834.12|polymerase (RNA) III (DNA directed) polypeptide G
mm39_v1_chr2_-_89487877_89487877	0.0941937	Hoxd9	ENSMUST00000099768.3|Olfr1250|ENSMUSG00000075078.6|olfactory receptor 1250
mm39_v1_chr3_+_5815863_5815866	0.091115	Hoxd9	ENSMUST00000192045.2|Gm8797|ENSMUSG00000103034.2|predicted pseudogene 8797
mm39_v1_chrX_+_94942639_94942639	0.090575	Hoxd9	ENSMUST00000082183.8|Zc3h12b|ENSMUSG00000035045.18|zinc finger CCCH-type containing 12B
mm39_v1_chr10_-_129107354_129107354	0.0865958	Hoxd9	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr7_-_104777612_104777612	0.0856881	Hoxd9	ENSMUST00000214399.4|Olfr682-ps1|ENSMUSG00000059768.8|olfactory receptor 682, pseudogene 1
mm39_v1_chr2_-_87570322_87570322	0.0834878	Hoxd9	ENSMUST00000214573.2|Olfr1138|ENSMUSG00000075149.3|olfactory receptor 1138
mm39_v1_chr2_-_88587017_88587017	0.0804325	Hoxd9	ENSMUST00000099813.2|Olfr1199|ENSMUSG00000089892.4|olfactory receptor 1199
mm39_v1_chr2_-_172296662_172296662	0.0703202	Hoxd9	ENSMUST00000161334.2|Gcnt7|ENSMUSG00000074569.5|glucosaminyl (N-acetyl) transferase family member 7
mm39_v1_chr11_-_58614840_58614840	0.0672096	Hoxd9	ENSMUST00000214728.2|Olfr318|ENSMUSG00000108265.3|olfactory receptor 318
mm39_v1_chr2_-_88534814_88534941	0.067191	Hoxd9	ENSMUST00000216928.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196	ENSMUST00000216977.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr2_+_83554770_83554858	0.0662618	Hoxd9	ENSMUST00000141725.3|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr14_-_54855446_54855479	0.06576	Hoxd9	ENSMUST00000227257.2|Psmb5|ENSMUSG00000022193.8|proteasome (prosome, macropain) subunit, beta type 5	ENSMUST00000022803.6|Psmb5|ENSMUSG00000022193.8|proteasome (prosome, macropain) subunit, beta type 5
mm39_v1_chr7_-_12829100_12829100	0.0634971	Hoxd9	ENSMUST00000209822.3|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85	ENSMUST00000235753.2|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85
mm39_v1_chr10_-_129463803_129463803	0.0582803	Hoxd9	ENSMUST00000204979.3|Olfr798|ENSMUSG00000095002.4|olfactory receptor 798
mm39_v1_chr3_+_103078971_103079041	0.0575089	Hoxd9	ENSMUST00000005830.15|Bcas2|ENSMUSG00000005687.15|breast carcinoma amplified sequence 2
mm39_v1_chr16_-_19241884_19241884	0.0568921	Hoxd9	ENSMUST00000206110.4|Olfr165|ENSMUSG00000050158.8|olfactory receptor 165
mm39_v1_chr17_+_38459392_38459392	0.0541408	Hoxd9	ENSMUST00000113636.2|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133
mm39_v1_chr12_-_30181898_30181898	0.0540455	Hoxd9	ENSMUST00000155263.2|Tpo|ENSMUSG00000020673.15|thyroid peroxidase
mm39_v1_chr2_+_87574098_87574098	0.0509283	Hoxd9	ENSMUST00000214723.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr3_-_49711765_49711772	0.0508135	Hoxd9	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr3_-_116505469_116505496	0.0487839	Hoxd9	ENSMUST00000153108.6|Slc35a3|ENSMUSG00000027957.14|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm39_v1_chr16_-_19385631_19385631	0.0473418	Hoxd9	ENSMUST00000090062.2|Olfr169|ENSMUSG00000068535.3|olfactory receptor 169
mm39_v1_chr17_+_78815493_78815601	0.0471776	Hoxd9	ENSMUST00000024880.11|Vit|ENSMUSG00000024076.11|vitrin	ENSMUST00000232859.2|Vit|ENSMUSG00000024076.11|vitrin
mm39_v1_chr4_+_5724305_5724357	0.0384553	Hoxd9	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr6_+_57009269_57009293	0.0363582	Hoxd9	ENSMUST00000227706.2|Vmn1r8|ENSMUSG00000061208.7|vomeronasal 1 receptor 8	ENSMUST00000228690.2|Vmn1r8|ENSMUSG00000061208.7|vomeronasal 1 receptor 8
mm39_v1_chr16_-_58850641_58850654	0.0355924	Hoxd9	ENSMUST00000216415.2|Olfr186|ENSMUSG00000047960.5|olfactory receptor 186	ENSMUST00000206463.3|Olfr186|ENSMUSG00000047960.5|olfactory receptor 186
mm39_v1_chr1_+_183170293_183170353	0.0350983	Hoxd9	ENSMUST00000192076.3|Taf1a|ENSMUSG00000072258.12|TATA-box binding protein associated factor, RNA polymerase I, A
mm39_v1_chr11_+_46345784_46345811	0.0350168	Hoxd9	ENSMUST00000109229.2|Havcr2|ENSMUSG00000020399.15|hepatitis A virus cellular receptor 2
mm39_v1_chr1_+_167426019_167426049	0.0303461	Hoxd9	ENSMUST00000111386.8|Rxrg|ENSMUSG00000015843.11|retinoid X receptor gamma	ENSMUST00000111384.8|Rxrg|ENSMUSG00000015843.11|retinoid X receptor gamma
mm39_v1_chr10_+_78711374_78711374	0.0282527	Hoxd9	ENSMUST00000078414.8|Olfr1355|ENSMUSG00000062873.8|olfactory receptor 1355
mm39_v1_chr3_-_49711706_49711758	0.0261006	Hoxd9	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr19_+_34078333_34078399	0.0231806	Hoxd9	ENSMUST00000025685.8|Lipm|ENSMUSG00000056078.7|lipase, family member M
mm39_v1_chr19_+_13595285_13595285	0.0195551	Hoxd9	ENSMUST00000216688.3|Olfr1487|ENSMUSG00000094846.5|olfactory receptor 1487
mm39_v1_chr15_+_11000802_11000823	0.0124085	Hoxd9	ENSMUST00000117100.4|Slc45a2|ENSMUSG00000022243.11|solute carrier family 45, member 2
mm39_v1_chr9_-_51240201_51240229	0.00655008	Hoxd9	ENSMUST00000039959.11|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene	ENSMUST00000238450.3|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene
mm39_v1_chr2_-_86722536_86722560	0.00651334	Hoxd9	ENSMUST00000111576.3|Olfr1097|ENSMUSG00000075170.5|olfactory receptor 1097	ENSMUST00000217403.2|Olfr1097|ENSMUSG00000075170.5|olfactory receptor 1097
mm39_v1_chr19_-_56536646_56536696	0.00464389	Hoxd9	ENSMUST00000182276.2|Dclre1a|ENSMUSG00000025077.14|DNA cross-link repair 1A
mm39_v1_chr9_+_38240788_38240788	0.00232659	Hoxd9	ENSMUST00000071449.3|Olfr25|ENSMUSG00000058270.4|olfactory receptor 25
mm39_v1_chr2_-_111908072_111908188	0.00195797	Hoxd9	ENSMUST00000213577.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313	ENSMUST00000216071.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313
mm39_v1_chr1_+_55276336_55276414	0.000254512	Hoxd9	ENSMUST00000061334.10|Mars2|ENSMUSG00000046994.10|methionine-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr8_+_66838927_66838980	0.000116769	Hoxd9	ENSMUST00000039540.12|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110253.3|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
