mm39_v1_chr1_-_79417732_79417837	10.0118	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr3_+_93301003_93301006	7.95165	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045912.3|Rptn|ENSMUSG00000041984.3|repetin
mm39_v1_chr15_+_39522905_39522982	5.92034	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000226410.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr14_-_110992533_110992584	5.31474	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078386.4|Slitrk6|ENSMUSG00000045871.6|SLIT and NTRK-like family, member 6
mm39_v1_chr2_+_129854256_129854270	4.96588	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110299.3|Tgm3|ENSMUSG00000027401.10|transglutaminase 3, E polypeptide
mm39_v1_chr10_-_25076008_25076076	4.84548	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr19_-_24178000_24178016	4.60428	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr5_+_14075281_14075305	4.53904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.8|Sema3e|ENSMUSG00000063531.8|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm39_v1_chr8_+_55407872_55407889	4.19386	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr16_-_45544960_45544982	4.16423	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chr2_+_27055245_27055245	4.15652	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000910.7|Dbh|ENSMUSG00000000889.9|dopamine beta hydroxylase
mm39_v1_chr2_-_103114105_103114147	4.02981	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111174.8|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chr18_+_23548534_23548567	3.88083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000221880.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000220904.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000047954.15|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr9_+_32027335_32027432	3.75438	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr18_+_23548455_23548511	3.66696	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115832.4|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr16_-_42160957_42161014	3.59554	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102817.5|Gap43|ENSMUSG00000047261.10|growth associated protein 43
mm39_v1_chr13_+_118851214_118851238	3.07764	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr17_+_12338161_12338235	3.06194	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024594.9|Agpat4|ENSMUSG00000023827.9|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm39_v1_chr13_-_78344492_78344561	3.04789	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125176.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr6_+_15196950_15197041	2.99037	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr3_+_159545309_159545390	2.95164	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.10|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator	ENSMUST00000198878.2|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator
mm39_v1_chr6_-_136758716_136758804	2.81727	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr7_+_126549692_126549756	2.65932	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr2_+_20742115_20742152	2.65763	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr13_-_103042554_103042619	2.65672	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr5_-_134776101_134776177	2.60533	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015138.13|Eln|ENSMUSG00000029675.13|elastin
mm39_v1_chr10_+_101994841_101994940	2.59888	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr6_+_29859372_29859380	2.54147	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115238.10|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr2_+_3115250_3115267	2.48328	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072955.12|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr17_-_90395771_90395828	2.46921	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197268.5|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000173917.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr17_-_49871291_49871371	2.43933	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000224595.2|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2	ENSMUST00000057610.8|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2
mm39_v1_chr5_-_77262968_77263003	2.39859	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081964.7|Hopx|ENSMUSG00000059325.15|HOP homeobox
mm39_v1_chr10_+_53213763_53213820	2.3124	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000219491.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000163319.9|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000220197.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000046221.8|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000218468.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000219921.2|Pln|ENSMUSG00000038583.14|phospholamban
mm39_v1_chr6_+_29859660_29859684	2.20179	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128927.9|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr7_-_115797722_115797796	2.16146	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181981.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr6_+_29859685_29859709	2.08437	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134438.2|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr5_+_35156389_35156430	2.07679	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12	ENSMUST00000114280.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr18_-_43925932_43925949	2.05692	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000237926.2|Gm94|ENSMUSG00000071858.5|predicted gene 94	ENSMUST00000096570.4|Gm94|ENSMUSG00000071858.5|predicted gene 94
mm39_v1_chr3_-_49711706_49711758	2.03373	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr12_+_38830283_38830348	2.01187	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162563.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000161164.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160996.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr13_-_103042294_103042318	1.98202	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr12_+_38830812_38830847	1.84623	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr7_+_126550009_126550138	1.77893	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr3_-_49711765_49711772	1.76653	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr10_+_101994719_101994750	1.76424	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138522.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000163753.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000138016.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr16_-_63684477_63684545	1.74438	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232654.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3	ENSMUST00000064405.8|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr18_-_38102799_38102836	1.74275	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166148.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000163131.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000043437.14|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1
mm39_v1_chr11_-_87249837_87249901	1.69049	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr7_+_126549859_126549901	1.64943	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr10_+_73657689_73657715	1.58022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064562.14|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193174.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105426.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000129404.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131321.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000126920.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000147189.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105424.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000092420.13|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105429.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193361.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131724.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152655.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000151116.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000155701.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152819.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125517.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000124046.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000146682.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177107.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000149977.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000191854.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr15_+_21111428_21111538	1.57617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr10_+_39488930_39488930	1.55592	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019987.7|Traf3ip2|ENSMUSG00000019842.7|TRAF3 interacting protein 2
mm39_v1_chr18_+_57601541_57601614	1.54763	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.4|Ctxn3|ENSMUSG00000069372.4|cortexin 3	ENSMUST00000209782.2|Ctxn3|ENSMUSG00000069372.4|cortexin 3
mm39_v1_chr6_+_7555053_7555096	1.54033	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090679.9|Tac1|ENSMUSG00000061762.13|tachykinin 1	ENSMUST00000184986.2|Tac1|ENSMUSG00000061762.13|tachykinin 1
mm39_v1_chr1_-_158183894_158183914	1.5279	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004133.11|Brinp2|ENSMUSG00000004031.14|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm39_v1_chr8_+_10299288_10299367	1.51154	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214643.2|Myo16|ENSMUSG00000039057.12|myosin XVI
mm39_v1_chr2_+_59442378_59442453	1.48779	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr5_-_62923463_62923615	1.48407	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr7_-_66077215_66077265	1.47623	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015278.15|Aldh1a3|ENSMUSG00000015134.16|aldehyde dehydrogenase family 1, subfamily A3
mm39_v1_chr16_-_74208180_74208314	1.43976	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr9_-_40257586_40257634	1.40871	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.8|Gramd1b|ENSMUSG00000040111.18|GRAM domain containing 1B
mm39_v1_chr3_-_72875187_72875202	1.40554	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr9_+_43222104_43222145	1.40535	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr10_-_85847697_85847761	1.38454	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105304.2|Bpifc|ENSMUSG00000050108.13|BPI fold containing family C	ENSMUST00000061699.12|Bpifc|ENSMUSG00000050108.13|BPI fold containing family C
mm39_v1_chr12_+_52746158_52746186	1.37456	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr11_-_97944239_97944293	1.36021	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr16_-_74208395_74208431	1.35819	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227347.2|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr5_+_35156454_35156528	1.34767	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr17_+_17622934_17622970	1.33742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115576.3|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr1_-_93088562_93088592	1.33649	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143419.2|Mab21l4|ENSMUSG00000034159.13|mab-21-like 4
mm39_v1_chr5_-_53864874_53865047	1.3363	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031093.5|Cckar|ENSMUSG00000029193.8|cholecystokinin A receptor
mm39_v1_chr17_-_36008863_36008894	1.33002	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146472.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr14_-_36820304_36820321	1.32903	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr10_-_8632519_8632533	1.32505	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000212869.2|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr12_+_38833454_38833482	1.29022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161980.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160701.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr6_+_125529911_125529943	1.28729	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr4_-_14621805_14621819	1.27227	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr4_-_43710231_43710255	1.2574	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr11_+_115225557_115225675	1.24213	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106543.8|Otop3|ENSMUSG00000018862.12|otopetrin 3	ENSMUST00000019006.5|Otop3|ENSMUSG00000018862.12|otopetrin 3
mm39_v1_chr17_+_49922129_49922200	1.21775	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162854.2|Kif6|ENSMUSG00000023999.15|kinesin family member 6
mm39_v1_chr12_+_38833501_38833526	1.21756	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159334.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr15_-_13173736_13173791	1.2022	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr12_+_31488208_31488226	1.20016	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001254.6|Slc26a3|ENSMUSG00000001225.13|solute carrier family 26, member 3
mm39_v1_chr12_+_38831093_38831128	1.16868	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr8_-_3675525_3675548	1.14847	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144977.2|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000136105.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000128566.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr7_+_30463175_30463224	1.12	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165887.8|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000085691.11|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000054427.13|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000085688.11|Dmkn|ENSMUSG00000060962.13|dermokine
mm39_v1_chr19_-_55229668_55229668	1.11579	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069183.8|Gucy2g|ENSMUSG00000055523.8|guanylate cyclase 2g
mm39_v1_chr19_+_24651362_24651381	1.1155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057243.6|Tmem252|ENSMUSG00000048572.6|transmembrane protein 252
mm39_v1_chr16_-_56688024_56688078	1.05758	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232373.2|Tmem45a|ENSMUSG00000022754.7|transmembrane protein 45a
mm39_v1_chrX_+_158086253_158086277	1.0412	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr10_-_44024843_44024866	1.03874	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000200401.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr19_-_14575395_14575451	1.03644	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr3_+_68479578_68479723	1.03619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr16_-_63684425_63684443	1.00036	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232049.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr18_+_23548192_23548270	0.985088	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222515.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr5_-_90788323_90788397	0.936305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000202784.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000031317.10|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000201370.2|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chr8_-_62576140_62576157	0.919896	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr1_+_104696235_104696254	0.907247	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr3_-_141687987_141688025	0.899556	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029948.15|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr6_-_147165623_147165681	0.867595	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052296.9|Pthlh|ENSMUSG00000048776.9|parathyroid hormone-like peptide	ENSMUST00000204197.2|Pthlh|ENSMUSG00000048776.9|parathyroid hormone-like peptide
mm39_v1_chr16_+_13176238_13176334	0.861071	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr1_-_52230062_52230090	0.853994	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156887.8|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000129107.2|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr10_+_88721854_88721872	0.837738	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr8_+_46111703_46111764	0.798689	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134675.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000139869.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000126067.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr2_+_22512195_22512217	0.794425	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028123.4|Gad2|ENSMUSG00000026787.4|glutamic acid decarboxylase 2
mm39_v1_chr3_-_154760978_154761044	0.782896	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064076.6|Tnni3k|ENSMUSG00000040086.14|TNNI3 interacting kinase
mm39_v1_chr5_-_23821523_23821596	0.767297	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr11_+_102495189_102495262	0.762383	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057893.7|Fzd2|ENSMUSG00000050288.7|frizzled class receptor 2
mm39_v1_chr19_-_5610628_5610674	0.762147	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr2_-_32976378_32976452	0.745051	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr6_+_145879839_145879862	0.740296	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032383.14|Sspn|ENSMUSG00000030255.14|sarcospan
mm39_v1_chr6_-_138398376_138398450	0.72188	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163065.8|Lmo3|ENSMUSG00000030226.13|LIM domain only 3
mm39_v1_chr11_+_66802807_66802829	0.716033	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000123434.3|Pirt|ENSMUSG00000048070.5|phosphoinositide-interacting regulator of transient receptor potential channels
mm39_v1_chr10_+_20024203_20024224	0.714949	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020173.16|Map7|ENSMUSG00000019996.18|microtubule-associated protein 7
mm39_v1_chr1_-_87322443_87322456	0.681918	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000113212.4|Kcnj13|ENSMUSG00000079436.4|potassium inwardly-rectifying channel, subfamily J, member 13
mm39_v1_chr4_-_58499398_58499409	0.667061	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107570.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr2_-_111843053_111843053	0.658572	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr7_+_43430459_43430502	0.653966	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000014058.11|Klk10|ENSMUSG00000030693.11|kallikrein related-peptidase 10
mm39_v1_chr5_-_5315968_5316292	0.653382	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr2_+_9887427_9887455	0.637056	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114919.2|4930412O13Rik|ENSMUSG00000025783.3|RIKEN cDNA 4930412O13 gene
mm39_v1_chr5_-_116162415_116162567	0.615216	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031486.14|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit	ENSMUST00000111999.8|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm39_v1_chr3_+_62327089_62327089	0.613667	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161057.2|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr11_-_20282684_20282770	0.612283	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004634.7|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	ENSMUST00000109594.8|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm39_v1_chr15_+_28203872_28203898	0.602198	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067048.8|Dnah5|ENSMUSG00000022262.9|dynein, axonemal, heavy chain 5
mm39_v1_chr4_+_108576846_108576846	0.591013	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178992.2|3110021N24Rik|ENSMUSG00000094958.2|RIKEN cDNA 3110021N24 gene
mm39_v1_chr11_-_77079794_77079794	0.585385	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108400.8|Efcab5|ENSMUSG00000050944.15|EF-hand calcium binding domain 5
mm39_v1_chr1_+_172383499_172383509	0.584533	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061835.10|Vsig8|ENSMUSG00000049598.10|V-set and immunoglobulin domain containing 8
mm39_v1_chrX_+_55500170_55500264	0.575364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr2_-_79287095_79287102	0.559192	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr12_-_25147139_25147282	0.549793	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000221761.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr16_-_57575070_57575100	0.549595	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000089332.5|Col8a1|ENSMUSG00000068196.6|collagen, type VIII, alpha 1
mm39_v1_chr6_+_136528155_136528189	0.545439	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000186742.2|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr15_+_65682066_65682083	0.525744	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000211878.2|Efr3a|ENSMUSG00000015002.19|EFR3 homolog A
mm39_v1_chr13_+_42834039_42834099	0.524617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr11_-_97591150_97591323	0.516781	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.14|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr18_+_37952556_37952571	0.515656	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.11|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr11_+_95915366_95915384	0.501613	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103157.10|Gip|ENSMUSG00000014351.13|gastric inhibitory polypeptide
mm39_v1_chr10_+_73782857_73782903	0.495174	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr16_-_37205277_37205293	0.494018	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr9_-_79885063_79885091	0.493343	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093811.11|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr9_-_96513529_96513670	0.491382	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr3_+_55369149_55369284	0.489882	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199585.5|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1	ENSMUST00000070418.9|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1
mm39_v1_chr9_+_61279640_61279665	0.485597	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178113.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159386.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr1_+_177557380_177557405	0.483308	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000016106.6|1700016C15Rik|ENSMUSG00000015962.6|RIKEN cDNA 1700016C15 gene
mm39_v1_chr13_-_78345932_78346049	0.483026	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000127137.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr15_-_64794139_64794164	0.481909	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000023007.7|Adcy8|ENSMUSG00000022376.9|adenylate cyclase 8	ENSMUST00000228014.2|Adcy8|ENSMUSG00000022376.9|adenylate cyclase 8
mm39_v1_chr2_+_152596075_152596106	0.478728	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000010020.12|Cox4i2|ENSMUSG00000009876.14|cytochrome c oxidase subunit 4I2
mm39_v1_chr5_+_13448833_13448964	0.478487	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137798.10|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr11_+_16207705_16207808	0.475134	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109645.9|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A	ENSMUST00000109647.3|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A
mm39_v1_chr5_-_137530214_137530251	0.471813	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.2|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr10_+_18345706_18345729	0.470816	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162891.8|Nhsl1|ENSMUSG00000039835.17|NHS-like 1	ENSMUST00000100054.4|Nhsl1|ENSMUSG00000039835.17|NHS-like 1
mm39_v1_chr5_+_27466914_27467004	0.468825	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101471.4|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr15_-_8740218_8740248	0.464161	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005493.14|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr18_+_37952596_37952623	0.462853	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000193890.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5	ENSMUST00000193941.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr4_-_58206596_58206616	0.45895	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042850.9|Svep1|ENSMUSG00000028369.16|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm39_v1_chr5_+_115573055_115573088	0.458396	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136586.6|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr5_-_131645437_131645450	0.449394	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr5_+_138185747_138185829	0.441976	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr9_-_79884920_79884944	0.440083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239133.2|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr8_-_3674993_3675015	0.431529	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000142431.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr11_-_33942981_33942998	0.430991	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000238903.2|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1
mm39_v1_chr18_-_24736848_24736900	0.4277	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.10|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr1_+_11063678_11063702	0.427416	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr5_-_90788460_90788559	0.423629	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000202704.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chr10_-_43934774_43934879	0.410383	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr17_+_93506435_93506459	0.409518	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234646.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1	ENSMUST00000234081.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr6_-_128252540_128252540	0.404314	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130454.8|Tead4|ENSMUSG00000030353.16|TEA domain family member 4
mm39_v1_chr3_-_92031247_92031260	0.401908	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070284.4|Prr9|ENSMUSG00000056270.4|proline rich 9
mm39_v1_chr8_+_24159669_24159690	0.399367	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr6_-_102441628_102441628	0.39356	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032159.7|Cntn3|ENSMUSG00000030075.11|contactin 3
mm39_v1_chr18_-_24736521_24736609	0.392605	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.2|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chrM_+_7006_7021	0.389892	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr4_+_19818718_19818733	0.383777	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035890.8|Slc7a13|ENSMUSG00000041052.9|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm39_v1_chr10_+_29074950_29074950	0.38352	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217011.2|Gm49353|ENSMUSG00000110723.2|predicted gene, 49353
mm39_v1_chr2_+_124978518_124978553	0.382574	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000238754.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr1_+_100025486_100025486	0.381693	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000188735.2|Cntnap5b|ENSMUSG00000067028.12|contactin associated protein-like 5B
mm39_v1_chr8_+_57774010_57774027	0.381521	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr18_+_37898633_37898633	0.35795	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044851.8|Pcdhga12|ENSMUSG00000102428.2|protocadherin gamma subfamily A, 12
mm39_v1_chr2_+_124978612_124978689	0.357943	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099452.3|Ctxn2|ENSMUSG00000074872.4|cortexin 2	ENSMUST00000238377.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr2_+_51928017_51928032	0.351995	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000065927.6|Tnfaip6|ENSMUSG00000053475.6|tumor necrosis factor alpha induced protein 6
mm39_v1_chr7_+_143792455_143792467	0.348184	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239495.2|Shank2|ENSMUSG00000037541.23|SH3 and multiple ankyrin repeat domains 2
mm39_v1_chr15_-_8739893_8739983	0.346196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000157065.2|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr6_-_23650205_23650271	0.340924	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr13_+_75855695_75855830	0.334858	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222194.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2	ENSMUST00000223535.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2	ENSMUST00000222853.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2
mm39_v1_chr6_-_23650297_23650308	0.331892	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063548.4|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr6_+_8948608_8948619	0.328212	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr3_+_10153163_10153190	0.327521	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061419.9|Gm9833|ENSMUSG00000049230.9|predicted gene 9833
mm39_v1_chr14_-_109151590_109151615	0.325832	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr17_+_93506590_93506601	0.315251	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064775.8|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr19_+_44980565_44980575	0.314368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179305.2|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr2_+_177969456_177969585	0.313243	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133267.3|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr11_-_99134885_99134964	0.300654	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr2_-_17465410_17465446	0.286993	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000145492.2|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr14_+_32043944_32043999	0.285363	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr13_+_55547498_55547513	0.274801	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057167.9|Slc34a1|ENSMUSG00000021490.12|solute carrier family 34 (sodium phosphate), member 1
mm39_v1_chr13_-_53627110_53627110	0.273932	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021922.10|Msx2|ENSMUSG00000021469.10|msh homeobox 2
mm39_v1_chr17_+_3447465_3447482	0.273301	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr8_+_46111778_46111841	0.263627	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143820.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr2_-_77533596_77533616	0.259299	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171063.8|Zfp385b|ENSMUSG00000027016.18|zinc finger protein 385B
mm39_v1_chr17_+_35150229_35150360	0.258586	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000007253.6|Neu1|ENSMUSG00000007038.6|neuraminidase 1
mm39_v1_chr3_-_88194517_88194517	0.257428	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165196.8|Gm38392|ENSMUSG00000103766.6|predicted gene, 38392
mm39_v1_chr4_+_5724305_5724357	0.256818	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr2_+_71359000_71359027	0.248198	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000126400.2|Dlx1|ENSMUSG00000041911.4|distal-less homeobox 1
mm39_v1_chr3_+_67799510_67799565	0.241146	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr10_-_129107354_129107354	0.238816	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr10_+_26648473_26648512	0.237384	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039557.9|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr16_-_37205302_37205341	0.23231	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114781.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114780.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr16_-_29363671_29363687	0.231887	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr18_+_24737009_24737051	0.22808	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234266.2|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2	ENSMUST00000025120.8|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2
mm39_v1_chr6_+_136509922_136509937	0.224463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000187429.4|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr2_+_89642395_89642395	0.222722	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr2_-_45001141_45001186	0.221428	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chrX_-_94701983_94702115	0.221203	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119640.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000120620.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000044382.7|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing
mm39_v1_chr7_+_28580847_28580847	0.213959	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066880.6|Capn12|ENSMUSG00000054083.9|calpain 12
mm39_v1_chr3_+_125197722_125197780	0.209904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173932.8|Ndst4|ENSMUSG00000027971.17|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm39_v1_chr10_+_99099084_99099106	0.207807	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.5|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6	ENSMUST00000220291.2|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6
mm39_v1_chrX_-_142716200_142716307	0.202299	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr3_+_63988968_63988968	0.199945	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029406.6|Vmn2r1|ENSMUSG00000027824.6|vomeronasal 2, receptor 1
mm39_v1_chr12_-_111947487_111947498	0.198951	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190536.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr8_-_3675024_3675049	0.198089	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133459.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr2_+_38231080_38231104	0.194779	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133661.8|Lhx2|ENSMUSG00000000247.12|LIM homeobox protein 2
mm39_v1_chr18_-_57108405_57108452	0.190513	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139243.9|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene	ENSMUST00000025488.15|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene
mm39_v1_chr19_-_46033353_46033724	0.179023	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr5_+_104350475_104350490	0.178001	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066708.7|Dmp1|ENSMUSG00000029307.8|dentin matrix protein 1
mm39_v1_chr8_-_3675274_3675288	0.177362	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004749.7|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr5_+_13448647_13448663	0.175565	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125629.8|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr4_+_116578117_116578201	0.175264	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr13_-_73826124_73826145	0.165417	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022105.15|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000109680.10|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000221026.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000109679.4|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18
mm39_v1_chr7_+_44830606_44830606	0.154488	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000210086.2|Pth2|ENSMUSG00000038300.7|parathyroid hormone 2
mm39_v1_chr9_+_96140781_96140838	0.154011	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr12_-_101784727_101784800	0.151638	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222587.2|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr19_+_26728339_26728367	0.148738	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175953.3|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr14_-_54651442_54651542	0.14873	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr6_-_115569504_115569560	0.146566	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112957.2|Mkrn2os|ENSMUSG00000068011.5|makorin, ring finger protein 2, opposite strand
mm39_v1_chr13_-_73826108_73826120	0.145415	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222029.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000223074.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000220650.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000221987.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18
mm39_v1_chr8_-_45835234_45835328	0.143969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093526.13|Fam149a|ENSMUSG00000070044.16|family with sequence similarity 149, member A
mm39_v1_chr10_-_12689345_12689359	0.143502	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217899.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr9_+_47441471_47441671	0.141393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr16_-_96971905_96971952	0.138269	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr5_+_107656810_107656810	0.137293	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160160.6|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr11_+_98689479_98689490	0.133773	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037930.13|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr12_+_55286111_55286111	0.132852	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164243.2|Srp54c|ENSMUSG00000079108.7|signal recognition particle 54C
mm39_v1_chr8_+_21382681_21382685	0.132791	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098908.4|Defb33|ENSMUSG00000074454.4|defensin beta 33
mm39_v1_chr12_-_111947536_111947547	0.132694	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185354.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr8_+_107757847_107757862	0.126466	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr6_-_136148820_136148887	0.126183	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000188999.3|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr1_-_144427302_144427302	0.125234	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000184189.3|Rgs21|ENSMUSG00000098509.3|regulator of G-protein signalling 21
mm39_v1_chr2_-_88531671_88531671	0.122181	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000104892.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr11_+_102175985_102176089	0.12197	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156326.2|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr8_-_62355690_62355762	0.12055	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121785.9|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein	ENSMUST00000034057.14|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein
mm39_v1_chr3_+_103739877_103739917	0.111675	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062945.12|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr14_+_79753055_79753148	0.111282	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr4_+_21848039_21848077	0.109089	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098238.9|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich	ENSMUST00000108229.2|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich
mm39_v1_chr2_+_106523532_106523624	0.107319	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr1_-_173018204_173018207	0.106421	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215878.2|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406	ENSMUST00000201132.3|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406
mm39_v1_chr5_-_150441629_150441629	0.10517	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118769.2|Zar1l|ENSMUSG00000056586.9|zygote arrest 1-like
mm39_v1_chr2_-_88559941_88559941	0.103498	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099815.2|Olfr1197|ENSMUSG00000075119.3|olfactory receptor 1197
mm39_v1_chr2_-_45000250_45000309	0.0967965	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201211.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000177302.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr12_+_72488625_72488640	0.0966229	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr17_+_75312520_75312563	0.0904233	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr9_+_96140750_96140764	0.0891791	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000186609.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr14_-_68771138_68771205	0.0873419	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022640.8|Adam7|ENSMUSG00000022056.10|a disintegrin and metallopeptidase domain 7
mm39_v1_chr18_+_56565188_56565236	0.0818762	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070166.6|Gramd3|ENSMUSG00000001700.11|GRAM domain containing 3
mm39_v1_chr5_-_142515792_142515841	0.0797401	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099400.3|Papolb|ENSMUSG00000074817.3|poly (A) polymerase beta (testis specific)
mm39_v1_chr8_-_85389470_85389488	0.0759422	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060427.6|Ier2|ENSMUSG00000053560.6|immediate early response 2
mm39_v1_chr13_+_23758555_23758623	0.0740368	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090776.7|H2ac7|ENSMUSG00000071478.7|H2A clustered histone 7
mm39_v1_chr2_+_85838122_85838122	0.0733478	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062166.2|Olfr1032|ENSMUSG00000042796.3|olfactory receptor 1032
mm39_v1_chr16_+_35861554_35861605	0.0729196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr3_-_144514386_144514386	0.0728463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197013.2|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr3_-_54962458_54962476	0.0717461	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr2_-_45007407_45007421	0.071434	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_+_73102269_73102283	0.068939	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr8_+_121842902_121842916	0.0653916	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr3_+_96537235_96537273	0.0628086	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000048915.11|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000196456.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000198027.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr10_+_127256192_127256218	0.0601141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171434.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr7_-_44635740_44635780	0.0595665	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000209056.3|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000209124.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000208312.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207659.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000045325.14|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr9_+_38788422_38788422	0.0589582	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078289.3|Olfr926|ENSMUSG00000064333.3|olfactory receptor 926
mm39_v1_chr19_+_58500411_58500458	0.0589086	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000235305.2|Ccdc172|ENSMUSG00000025090.10|coiled-coil domain containing 172	ENSMUST00000069419.8|Ccdc172|ENSMUSG00000025090.10|coiled-coil domain containing 172
mm39_v1_chr12_-_56581823_56581891	0.0566686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chrM_+_8603_8615	0.055191	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr17_-_37523969_37524009	0.0544548	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr19_+_12364643_12364664	0.0508767	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chr7_-_44635813_44635992	0.0501419	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000208829.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207370.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000107843.11|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr3_+_96175970_96176004	0.047791	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098843.3|H3c13|ENSMUSG00000074403.3|H3 clustered histone 13
mm39_v1_chr6_-_116693849_116693885	0.0477479	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056623.13|Tmem72|ENSMUSG00000048108.14|transmembrane protein 72
mm39_v1_chr2_-_88157559_88157559	0.046474	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214207.2|Olfr1175|ENSMUSG00000083855.7|olfactory receptor 1175
mm39_v1_chr5_-_86521273_86521285	0.0464027	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031175.12|Tmprss11d|ENSMUSG00000061259.12|transmembrane protease, serine 11d
mm39_v1_chr2_-_5838489_5838489	0.0322558	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128467.4|Cdc123|ENSMUSG00000039128.14|cell division cycle 123
mm39_v1_chr2_-_45000389_45000766	0.0302656	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chrX_-_156198282_156198309	0.0279717	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079945.11|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked	ENSMUST00000138396.3|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked
mm39_v1_chr5_-_66672158_66672180	0.027962	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161879.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159357.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr3_+_96537484_96537516	0.02476	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000200647.2|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr12_-_46863726_46863743	0.0245013	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000219330.2|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr1_-_4430481_4430537	0.0240826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027032.6|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr15_-_101710781_101710802	0.0239469	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063292.8|Krt73|ENSMUSG00000063661.7|keratin 73
mm39_v1_chr14_+_8283087_8283087	0.0182819	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000206298.3|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720	ENSMUST00000216079.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr12_-_91815855_91815931	0.0148572	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr2_+_127750978_127750978	0.0111011	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.2|Acoxl|ENSMUSG00000027380.11|acyl-Coenzyme A oxidase-like
mm39_v1_chr16_-_95387444_95387454	0.0110386	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233269.2|Erg|ENSMUSG00000040732.21|ETS transcription factor
mm39_v1_chr4_+_80752360_80752467	0.0103298	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133655.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1	ENSMUST00000006151.13|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr2_-_87504008_87504008	0.00794589	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000213835.2|Olfr1135|ENSMUSG00000075153.3|olfactory receptor 1135
mm39_v1_chr13_-_23302027_23302027	0.00755274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000228656.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr12_+_55211069_55211069	0.00717065	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000218889.2|Srp54b|ENSMUSG00000112449.2|signal recognition particle 54B
mm39_v1_chr11_-_99501015_99501079	0.00693826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076478.2|Gm11937|ENSMUSG00000058725.2|predicted gene 11937
mm39_v1_chr7_+_140181182_140181253	0.00581312	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214180.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46	ENSMUST00000211771.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46
mm39_v1_chr13_-_23302396_23302396	0.00284395	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr4_-_97472844_97472880	0.00199669	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107067.8|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene	ENSMUST00000107068.9|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene
mm39_v1_chr1_+_92499044_92499044	6.58748e-05	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214239.2|Olfr1413|ENSMUSG00000058904.4|olfactory receptor 1413
