mm39_v1_chr15_+_6673167_6673187	6.32976	Msx2_Hoxd4	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr11_+_67061908_67062046	4.94115	Msx2_Hoxd4	ENSMUST00000018641.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr11_+_67061837_67061866	4.7746	Msx2_Hoxd4	ENSMUST00000170159.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr1_-_144427302_144427302	2.89618	Msx2_Hoxd4	ENSMUST00000184189.3|Rgs21|ENSMUSG00000098509.3|regulator of G-protein signalling 21
mm39_v1_chr3_-_14843512_14843526	2.84037	Msx2_Hoxd4	ENSMUST00000094365.11|Car1|ENSMUSG00000027556.16|carbonic anhydrase 1
mm39_v1_chr3_-_75177378_75177392	2.70709	Msx2_Hoxd4	ENSMUST00000039047.5|Serpini2|ENSMUSG00000034139.5|serine (or cysteine) peptidase inhibitor, clade I, member 2
mm39_v1_chr5_-_62923463_62923615	2.6354	Msx2_Hoxd4	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr6_+_68233361_68233373	2.21693	Msx2_Hoxd4	ENSMUST00000103320.3|Igkv14-111|ENSMUSG00000095771.3|immunoglobulin kappa variable 14-111
mm39_v1_chr4_-_96673423_96673423	2.16932	Msx2_Hoxd4	ENSMUST00000107071.2|Gm12695|ENSMUSG00000078639.2|predicted gene 12695
mm39_v1_chr2_+_4022537_4022557	2.15284	Msx2_Hoxd4	ENSMUST00000177457.8|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chrX_+_158491589_158491638	2.0591	Msx2_Hoxd4	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr18_+_4920513_4920584	2.04744	Msx2_Hoxd4	ENSMUST00000126977.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr3_+_40755211_40755224	1.87718	Msx2_Hoxd4	ENSMUST00000204473.2|Plk4|ENSMUSG00000025758.11|polo like kinase 4
mm39_v1_chr13_+_49761506_49761539	1.86173	Msx2_Hoxd4	ENSMUST00000021822.7|Ogn|ENSMUSG00000021390.7|osteoglycin
mm39_v1_chr13_+_49697919_49698009	1.79764	Msx2_Hoxd4	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chr14_+_79753055_79753148	1.76405	Msx2_Hoxd4	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr1_-_149836974_149837058	1.7625	Msx2_Hoxd4	ENSMUST00000190507.2|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)	ENSMUST00000070200.15|Pla2g4a|ENSMUSG00000056220.15|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm39_v1_chr19_-_46033353_46033724	1.72294	Msx2_Hoxd4	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr1_-_165535654_165535668	1.59468	Msx2_Hoxd4	ENSMUST00000097474.9|Rcsd1|ENSMUSG00000040723.15|RCSD domain containing 1
mm39_v1_chr7_-_45570828_45570868	1.59151	Msx2_Hoxd4	ENSMUST00000038876.13|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chrX_+_55500170_55500264	1.5532	Msx2_Hoxd4	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr1_+_45834645_45834692	1.54199	Msx2_Hoxd4	ENSMUST00000147308.2|Wdr75|ENSMUSG00000025995.17|WD repeat domain 75
mm39_v1_chr2_-_84255602_84255755	1.51051	Msx2_Hoxd4	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr6_-_136918885_136918909	1.49263	Msx2_Hoxd4	ENSMUST00000111891.4|Arhgdib|ENSMUSG00000030220.14|Rho, GDP dissociation inhibitor (GDI) beta
mm39_v1_chr7_-_45570254_45570307	1.46199	Msx2_Hoxd4	ENSMUST00000164119.3|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr6_-_69584812_69584840	1.38499	Msx2_Hoxd4	ENSMUST00000103359.3|Igkv4-55|ENSMUSG00000096833.3|immunoglobulin kappa variable 4-55
mm39_v1_chr7_-_45570538_45570586	1.36873	Msx2_Hoxd4	ENSMUST00000210297.2|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr6_+_149226891_149226956	1.36354	Msx2_Hoxd4	ENSMUST00000189837.2|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chrX_+_158086253_158086277	1.35089	Msx2_Hoxd4	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr18_-_43610829_43610868	1.34778	Msx2_Hoxd4	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr10_-_107321938_107321995	1.3292	Msx2_Hoxd4	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr6_-_124756645_124756698	1.32523	Msx2_Hoxd4	ENSMUST00000147669.2|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000128697.8|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000032218.10|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000112475.9|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23
mm39_v1_chr7_-_45570674_45570764	1.32186	Msx2_Hoxd4	ENSMUST00000210939.2|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr3_-_49711706_49711758	1.28809	Msx2_Hoxd4	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr2_-_72817060_72817060	1.2824	Msx2_Hoxd4	ENSMUST00000112062.2|Gm11084|ENSMUSG00000079286.2|predicted gene 11084
mm39_v1_chr15_-_101422054_101422054	1.25921	Msx2_Hoxd4	ENSMUST00000230067.3|Gm49425|ENSMUSG00000116336.3|predicted gene, 49425
mm39_v1_chr2_-_45002902_45003021	1.20608	Msx2_Hoxd4	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr3_-_49711765_49711772	1.20313	Msx2_Hoxd4	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr6_-_129449739_129449755	1.19738	Msx2_Hoxd4	ENSMUST00000112076.9|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a	ENSMUST00000184581.3|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a
mm39_v1_chr5_-_23821523_23821596	1.18193	Msx2_Hoxd4	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr7_-_73191484_73191503	1.1489	Msx2_Hoxd4	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr13_+_19398273_19398273	1.11197	Msx2_Hoxd4	ENSMUST00000103558.3|Trgc1|ENSMUSG00000076749.3|T cell receptor gamma, constant 1
mm39_v1_chr5_+_17779273_17779291	1.06399	Msx2_Hoxd4	ENSMUST00000030568.14|Sema3c|ENSMUSG00000028780.14|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm39_v1_chr18_+_44237577_44237613	1.05733	Msx2_Hoxd4	ENSMUST00000239465.2|Spink12|ENSMUSG00000061144.7|serine peptidase inhibitor, Kazal type 12
mm39_v1_chr6_-_87510200_87510246	1.05684	Msx2_Hoxd4	ENSMUST00000113637.9|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25	ENSMUST00000071024.7|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25
mm39_v1_chr9_-_114219685_114219755	1.04902	Msx2_Hoxd4	ENSMUST00000084881.5|Crtap|ENSMUSG00000032431.7|cartilage associated protein
mm39_v1_chr3_+_32490300_32490300	1.04398	Msx2_Hoxd4	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr10_-_63039709_63039735	0.988127	Msx2_Hoxd4	ENSMUST00000095580.3|Mypn|ENSMUSG00000020067.9|myopalladin
mm39_v1_chrX_+_132751729_132751878	0.953154	Msx2_Hoxd4	ENSMUST00000033602.9|Tnmd|ENSMUSG00000031250.9|tenomodulin
mm39_v1_chr6_-_129600798_129600809	0.93791	Msx2_Hoxd4	ENSMUST00000095412.10|Klrk1|ENSMUSG00000030149.16|killer cell lectin-like receptor subfamily K, member 1
mm39_v1_chr6_-_129600812_129600833	0.937262	Msx2_Hoxd4	ENSMUST00000168919.8|Klrk1|ENSMUSG00000030149.16|killer cell lectin-like receptor subfamily K, member 1
mm39_v1_chrX_+_135145813_135145836	0.933566	Msx2_Hoxd4	ENSMUST00000048687.11|Tceal9|ENSMUSG00000042712.11|transcription elongation factor A like 9
mm39_v1_chr7_-_120673761_120673795	0.925412	Msx2_Hoxd4	ENSMUST00000047194.4|Igsf6|ENSMUSG00000035004.4|immunoglobulin superfamily, member 6
mm39_v1_chr2_-_163259012_163259017	0.910229	Msx2_Hoxd4	ENSMUST00000127038.2|Oser1|ENSMUSG00000035399.13|oxidative stress responsive serine rich 1
mm39_v1_chr4_-_3872105_3872105	0.905162	Msx2_Hoxd4	ENSMUST00000105158.2|Mos|ENSMUSG00000078365.6|Moloney sarcoma oncogene
mm39_v1_chr12_-_76224025_76224039	0.86383	Msx2_Hoxd4	ENSMUST00000101291.11|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000218621.2|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000076634.5|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)
mm39_v1_chr9_-_107482494_107482601	0.828921	Msx2_Hoxd4	ENSMUST00000102529.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr7_-_115459082_115459098	0.827694	Msx2_Hoxd4	ENSMUST00000206123.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr3_-_68911835_68911879	0.820032	Msx2_Hoxd4	ENSMUST00000107812.8|Ift80|ENSMUSG00000027778.16|intraflagellar transport 80
mm39_v1_chr13_+_51562675_51562834	0.806967	Msx2_Hoxd4	ENSMUST00000087978.5|S1pr3|ENSMUSG00000067586.5|sphingosine-1-phosphate receptor 3
mm39_v1_chr2_+_74522258_74522284	0.804881	Msx2_Hoxd4	ENSMUST00000061745.5|Hoxd10|ENSMUSG00000050368.5|homeobox D10
mm39_v1_chr8_+_82582953_82583006	0.788455	Msx2_Hoxd4	ENSMUST00000109851.3|Inpp4b|ENSMUSG00000037940.18|inositol polyphosphate-4-phosphatase, type II
mm39_v1_chr3_-_146200870_146200894	0.77882	Msx2_Hoxd4	ENSMUST00000093951.3|Spata1|ENSMUSG00000028188.14|spermatogenesis associated 1
mm39_v1_chr1_-_156766351_156766379	0.77796	Msx2_Hoxd4	ENSMUST00000189648.2|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr3_-_68911807_68911832	0.776021	Msx2_Hoxd4	ENSMUST00000154741.8|Ift80|ENSMUSG00000027778.16|intraflagellar transport 80	ENSMUST00000148031.2|Ift80|ENSMUSG00000027778.16|intraflagellar transport 80
mm39_v1_chr2_-_73284262_73284323	0.774136	Msx2_Hoxd4	ENSMUST00000102679.8|Wipf1|ENSMUSG00000075284.11|WAS/WASL interacting protein family, member 1
mm39_v1_chr16_+_14523696_14523722	0.766978	Msx2_Hoxd4	ENSMUST00000023356.8|Snai2|ENSMUSG00000022676.8|snail family zinc finger 2
mm39_v1_chr19_+_45433899_45433982	0.747688	Msx2_Hoxd4	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr4_-_82768958_82769051	0.737524	Msx2_Hoxd4	ENSMUST00000139401.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr11_+_98689479_98689490	0.726641	Msx2_Hoxd4	ENSMUST00000037930.13|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr7_+_140181182_140181253	0.714655	Msx2_Hoxd4	ENSMUST00000214180.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46	ENSMUST00000211771.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46
mm39_v1_chrX_+_100683662_100683714	0.714032	Msx2_Hoxd4	ENSMUST00000119299.8|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	ENSMUST00000044475.5|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm39_v1_chr9_-_107482462_107482482	0.684969	Msx2_Hoxd4	ENSMUST00000194433.6|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr2_-_45000389_45000766	0.682812	Msx2_Hoxd4	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr18_+_34973605_34973646	0.670352	Msx2_Hoxd4	ENSMUST00000043484.8|Reep2|ENSMUSG00000038555.8|receptor accessory protein 2
mm39_v1_chr2_-_59955995_59956119	0.668448	Msx2_Hoxd4	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr8_+_31601837_31601919	0.657014	Msx2_Hoxd4	ENSMUST00000046941.8|Rnf122|ENSMUSG00000039328.12|ring finger protein 122	ENSMUST00000217278.2|Rnf122|ENSMUSG00000039328.12|ring finger protein 122
mm39_v1_chr7_-_113716996_113717023	0.655631	Msx2_Hoxd4	ENSMUST00000069449.7|Rras2|ENSMUSG00000055723.7|related RAS viral (r-ras) oncogene 2
mm39_v1_chr12_-_113896002_113896052	0.649924	Msx2_Hoxd4	ENSMUST00000103463.3|Ighv14-1|ENSMUSG00000094509.2|immunoglobulin heavy variable 14-1
mm39_v1_chr9_-_107648144_107648206	0.64628	Msx2_Hoxd4	ENSMUST00000183248.3|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182022.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000035199.13|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182659.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5
mm39_v1_chr10_+_101994841_101994940	0.642275	Msx2_Hoxd4	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr6_-_23650297_23650308	0.606291	Msx2_Hoxd4	ENSMUST00000063548.4|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr7_+_89814713_89814756	0.603731	Msx2_Hoxd4	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr1_-_156766381_156766423	0.595775	Msx2_Hoxd4	ENSMUST00000188656.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr6_+_29361408_29361460	0.572421	Msx2_Hoxd4	ENSMUST00000156163.2|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr6_+_124281607_124281659	0.569165	Msx2_Hoxd4	ENSMUST00000032234.5|Cd163|ENSMUSG00000008845.10|CD163 antigen	ENSMUST00000112541.8|Cd163|ENSMUSG00000008845.10|CD163 antigen
mm39_v1_chrX_+_149330371_149330455	0.568726	Msx2_Hoxd4	ENSMUST00000066337.13|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid	ENSMUST00000112715.2|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid
mm39_v1_chr3_+_7494108_7494122	0.568594	Msx2_Hoxd4	ENSMUST00000193330.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr3_+_84859453_84859493	0.567386	Msx2_Hoxd4	ENSMUST00000029727.8|Fbxw7|ENSMUSG00000028086.16|F-box and WD-40 domain protein 7
mm39_v1_chr17_+_46471950_46471997	0.55904	Msx2_Hoxd4	ENSMUST00000024748.14|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2	ENSMUST00000172170.8|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2
mm39_v1_chr11_-_79421397_79421435	0.557516	Msx2_Hoxd4	ENSMUST00000103236.4|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a	ENSMUST00000170422.4|Evi2|ENSMUSG00000070354.14|ecotropic viral integration site 2	ENSMUST00000170799.8|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a
mm39_v1_chr13_-_103042554_103042619	0.548764	Msx2_Hoxd4	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr18_+_44237474_44237548	0.544889	Msx2_Hoxd4	ENSMUST00000081271.7|Spink12|ENSMUSG00000061144.7|serine peptidase inhibitor, Kazal type 12
mm39_v1_chr12_-_113733922_113733922	0.522933	Msx2_Hoxd4	ENSMUST00000180013.3|Ighv2-9-1|ENSMUSG00000095565.3|immunoglobulin heavy variable 2-9-1
mm39_v1_chr2_-_152422220_152422235	0.500286	Msx2_Hoxd4	ENSMUST00000053180.4|Defb19|ENSMUSG00000050645.4|defensin beta 19
mm39_v1_chr10_+_5543769_5543809	0.499293	Msx2_Hoxd4	ENSMUST00000051809.10|Myct1|ENSMUSG00000046916.10|myc target 1
mm39_v1_chr13_+_21546990_21547054	0.497549	Msx2_Hoxd4	ENSMUST00000225545.2|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12	ENSMUST00000053293.14|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12
mm39_v1_chr1_-_80255156_80255168	0.492057	Msx2_Hoxd4	ENSMUST00000168372.2|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr8_-_26609153_26609260	0.484937	Msx2_Hoxd4	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr3_-_144275897_144275989	0.483243	Msx2_Hoxd4	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr4_+_122730027_122730053	0.480952	Msx2_Hoxd4	ENSMUST00000030412.11|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1	ENSMUST00000121870.8|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1	ENSMUST00000097902.5|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1
mm39_v1_chr5_-_121641461_121641503	0.479366	Msx2_Hoxd4	ENSMUST00000079368.5|Adam1b|ENSMUSG00000062438.5|a disintegrin and metallopeptidase domain 1b
mm39_v1_chr13_-_21330037_21330037	0.478533	Msx2_Hoxd4	ENSMUST00000216039.3|Olfr1368|ENSMUSG00000045474.8|olfactory receptor 1368
mm39_v1_chr18_+_9707595_9707637	0.473044	Msx2_Hoxd4	ENSMUST00000234965.2|Colec12|ENSMUSG00000036103.10|collectin sub-family member 12
mm39_v1_chr3_-_75072319_75072362	0.465042	Msx2_Hoxd4	ENSMUST00000124618.2|Zbbx|ENSMUSG00000034151.14|zinc finger, B-box domain containing
mm39_v1_chr3_+_137770813_137770839	0.459479	Msx2_Hoxd4	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr1_+_165616315_165616338	0.454304	Msx2_Hoxd4	ENSMUST00000161559.3|Cd247|ENSMUSG00000005763.16|CD247 antigen
mm39_v1_chr2_+_20742115_20742152	0.449339	Msx2_Hoxd4	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr13_-_103042294_103042318	0.435131	Msx2_Hoxd4	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr10_-_89270554_89270640	0.43502	Msx2_Hoxd4	ENSMUST00000220071.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3
mm39_v1_chr6_-_13871475_13871517	0.43103	Msx2_Hoxd4	ENSMUST00000139231.2|2610001J05Rik|ENSMUSG00000052419.8|RIKEN cDNA 2610001J05 gene
mm39_v1_chr2_+_89642395_89642395	0.430309	Msx2_Hoxd4	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr14_-_36641270_36641311	0.425205	Msx2_Hoxd4	ENSMUST00000182797.8|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr1_+_53100796_53100816	0.424939	Msx2_Hoxd4	ENSMUST00000027269.7|Mstn|ENSMUSG00000026100.7|myostatin	ENSMUST00000191197.2|Mstn|ENSMUSG00000026100.7|myostatin
mm39_v1_chr4_+_109092610_109092610	0.419559	Msx2_Hoxd4	ENSMUST00000106628.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr1_-_155293141_155293179	0.414352	Msx2_Hoxd4	ENSMUST00000111775.8|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1	ENSMUST00000111774.2|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr9_-_56151334_56151382	0.413252	Msx2_Hoxd4	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr17_-_37523969_37524009	0.410421	Msx2_Hoxd4	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr16_+_27126239_27126400	0.407786	Msx2_Hoxd4	ENSMUST00000066852.9|Ostn|ENSMUSG00000052276.9|osteocrin
mm39_v1_chr19_+_26727111_26727277	0.407014	Msx2_Hoxd4	ENSMUST00000175842.4|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr11_+_59197746_59197761	0.399229	Msx2_Hoxd4	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr11_-_73742280_73742280	0.397888	Msx2_Hoxd4	ENSMUST00000213365.2|Olfr393|ENSMUSG00000094488.3|olfactory receptor 393
mm39_v1_chr10_+_128139191_128139221	0.397723	Msx2_Hoxd4	ENSMUST00000005825.8|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit
mm39_v1_chr18_+_7905440_7905475	0.396087	Msx2_Hoxd4	ENSMUST00000170854.2|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil
mm39_v1_chr19_-_24178000_24178016	0.385265	Msx2_Hoxd4	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr14_-_30973164_30973305	0.373344	Msx2_Hoxd4	ENSMUST00000226565.2|Phf7|ENSMUSG00000021902.8|PHD finger protein 7	ENSMUST00000022459.5|Phf7|ENSMUSG00000021902.8|PHD finger protein 7
mm39_v1_chr7_-_84328553_84328609	0.368676	Msx2_Hoxd4	ENSMUST00000069537.3|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207865.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000178385.9|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000208782.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr13_+_76115824_76115907	0.36818	Msx2_Hoxd4	ENSMUST00000022081.3|Spata9|ENSMUSG00000021590.8|spermatogenesis associated 9
mm39_v1_chr14_+_54183465_54183530	0.365772	Msx2_Hoxd4	ENSMUST00000197130.5|Trdv2-1|ENSMUSG00000076865.7|T cell receptor delta variable 2-1	ENSMUST00000103677.3|Trdv2-1|ENSMUSG00000076865.7|T cell receptor delta variable 2-1
mm39_v1_chr6_-_23650205_23650271	0.365513	Msx2_Hoxd4	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr6_-_57877975_57877975	0.364407	Msx2_Hoxd4	ENSMUST00000228322.2|Vmn1r22|ENSMUSG00000115091.2|vomeronasal 1 receptor 22
mm39_v1_chr2_+_83554770_83554858	0.361687	Msx2_Hoxd4	ENSMUST00000141725.3|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr14_+_53562089_53562089	0.346548	Msx2_Hoxd4	ENSMUST00000178100.3|Trav7n-6|ENSMUSG00000105080.2|T cell receptor alpha variable 7N-6
mm39_v1_chr1_-_132318039_132318105	0.344221	Msx2_Hoxd4	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr14_-_86986541_86986569	0.343263	Msx2_Hoxd4	ENSMUST00000226254.2|Diaph3|ENSMUSG00000022021.15|diaphanous related formin 3
mm39_v1_chr18_-_38102799_38102836	0.341958	Msx2_Hoxd4	ENSMUST00000166148.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000163131.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000043437.14|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1
mm39_v1_chr17_-_29226700_29226804	0.339635	Msx2_Hoxd4	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr1_+_171668122_171668137	0.338666	Msx2_Hoxd4	ENSMUST00000135386.2|Cd84|ENSMUSG00000038147.15|CD84 antigen
mm39_v1_chr4_-_43710231_43710255	0.338134	Msx2_Hoxd4	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr2_+_85809620_85809620	0.336508	Msx2_Hoxd4	ENSMUST00000056849.3|Olfr1030|ENSMUSG00000044923.5|olfactory receptor 1030
mm39_v1_chr13_-_43634695_43634823	0.33547	Msx2_Hoxd4	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr14_-_50586329_50586329	0.333817	Msx2_Hoxd4	ENSMUST00000216634.2|Olfr735|ENSMUSG00000046210.8|olfactory receptor 735
mm39_v1_chr5_-_53864874_53865047	0.331173	Msx2_Hoxd4	ENSMUST00000031093.5|Cckar|ENSMUSG00000029193.8|cholecystokinin A receptor
mm39_v1_chr5_-_151351628_151351675	0.330154	Msx2_Hoxd4	ENSMUST00000202365.2|Gm42906|ENSMUSG00000107011.2|predicted gene 42906	ENSMUST00000186838.2|D730045B01Rik|ENSMUSG00000054622.5|RIKEN cDNA D730045B01 gene
mm39_v1_chr9_+_30853837_30853858	0.328749	Msx2_Hoxd4	ENSMUST00000068135.13|Adamts8|ENSMUSG00000031994.14|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8
mm39_v1_chr9_+_37400317_37400357	0.328254	Msx2_Hoxd4	ENSMUST00000239459.2|Msantd2|ENSMUSG00000042138.10|Myb/SANT-like DNA-binding domain containing 2
mm39_v1_chr2_-_104324035_104324098	0.327961	Msx2_Hoxd4	ENSMUST00000111124.8|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr15_+_41694317_41694397	0.32329	Msx2_Hoxd4	ENSMUST00000166917.3|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230127.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230131.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr1_+_33947250_33947306	0.31887	Msx2_Hoxd4	ENSMUST00000183034.5|Dst|ENSMUSG00000026131.21|dystonin
mm39_v1_chr15_-_3333003_3333044	0.309198	Msx2_Hoxd4	ENSMUST00000165386.2|Ccdc152|ENSMUSG00000091119.3|coiled-coil domain containing 152
mm39_v1_chr2_+_57887896_57887896	0.3078	Msx2_Hoxd4	ENSMUST00000112616.8|Galnt5|ENSMUSG00000026828.12|polypeptide N-acetylgalactosaminyltransferase 5	ENSMUST00000166729.2|Galnt5|ENSMUSG00000026828.12|polypeptide N-acetylgalactosaminyltransferase 5
mm39_v1_chr11_-_87716849_87716939	0.287741	Msx2_Hoxd4	ENSMUST00000103177.10|Lpo|ENSMUSG00000009356.13|lactoperoxidase
mm39_v1_chr10_-_14421368_14421426	0.287004	Msx2_Hoxd4	ENSMUST00000208429.3|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6
mm39_v1_chr10_+_127256736_127256786	0.286591	Msx2_Hoxd4	ENSMUST00000064793.13|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr6_+_83142902_83142986	0.285166	Msx2_Hoxd4	ENSMUST00000077407.12|Dctn1|ENSMUSG00000031865.17|dynactin 1	ENSMUST00000113913.8|Dctn1|ENSMUSG00000031865.17|dynactin 1	ENSMUST00000130212.8|Dctn1|ENSMUSG00000031865.17|dynactin 1
mm39_v1_chr14_+_53599724_53599724	0.282624	Msx2_Hoxd4	ENSMUST00000196105.2|Trav13n-4|ENSMUSG00000076823.4|T cell receptor alpha variable 13N-4
mm39_v1_chr13_+_118851214_118851238	0.276487	Msx2_Hoxd4	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr18_+_37453427_37453470	0.276376	Msx2_Hoxd4	ENSMUST00000078271.4|Pcdhb5|ENSMUSG00000063687.4|protocadherin beta 5
mm39_v1_chr10_+_127257077_127257104	0.267079	Msx2_Hoxd4	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr18_-_3309858_3309915	0.264377	Msx2_Hoxd4	ENSMUST00000144496.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator	ENSMUST00000154715.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr6_-_40906665_40906676	0.255471	Msx2_Hoxd4	ENSMUST00000136499.2|1700074P13Rik|ENSMUSG00000029883.13|RIKEN cDNA 1700074P13 gene
mm39_v1_chr11_-_99482165_99482207	0.252771	Msx2_Hoxd4	ENSMUST00000104930.2|Krtap1-3|ENSMUSG00000078131.2|keratin associated protein 1-3
mm39_v1_chr11_-_66059330_66059359	0.246515	Msx2_Hoxd4	ENSMUST00000080665.10|Dnah9|ENSMUSG00000056752.17|dynein, axonemal, heavy chain 9
mm39_v1_chr5_-_123127346_123127401	0.243311	Msx2_Hoxd4	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr11_-_99265721_99265735	0.243279	Msx2_Hoxd4	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr15_-_36165017_36165030	0.242271	Msx2_Hoxd4	ENSMUST00000058643.4|Fbxo43|ENSMUSG00000048230.7|F-box protein 43
mm39_v1_chr14_-_56137697_56137717	0.237464	Msx2_Hoxd4	ENSMUST00000111325.5|Sdr39u1|ENSMUSG00000022223.10|short chain dehydrogenase/reductase family 39U, member 1
mm39_v1_chr1_-_14380418_14380463	0.23314	Msx2_Hoxd4	ENSMUST00000027066.13|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000168081.9|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chrX_+_21350783_21350875	0.231381	Msx2_Hoxd4	ENSMUST00000089188.9|Agtr2|ENSMUSG00000068122.11|angiotensin II receptor, type 2
mm39_v1_chr10_+_127256993_127257073	0.231374	Msx2_Hoxd4	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr2_-_32976378_32976452	0.230584	Msx2_Hoxd4	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr19_-_55229668_55229668	0.219235	Msx2_Hoxd4	ENSMUST00000069183.8|Gucy2g|ENSMUSG00000055523.8|guanylate cyclase 2g
mm39_v1_chr7_+_122723365_122723446	0.209156	Msx2_Hoxd4	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr6_-_39702381_39702413	0.208749	Msx2_Hoxd4	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr10_-_129107354_129107354	0.204851	Msx2_Hoxd4	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr5_-_72325482_72325542	0.204042	Msx2_Hoxd4	ENSMUST00000196241.2|Commd8|ENSMUSG00000029213.12|COMM domain containing 8	ENSMUST00000013693.11|Commd8|ENSMUSG00000029213.12|COMM domain containing 8
mm39_v1_chr15_+_38869415_38869443	0.199953	Msx2_Hoxd4	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr6_+_15196950_15197041	0.193078	Msx2_Hoxd4	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr3_+_144283355_144283413	0.19285	Msx2_Hoxd4	ENSMUST00000151086.3|Selenof|ENSMUSG00000037072.17|selenoprotein F
mm39_v1_chr6_+_29853745_29853789	0.19211	Msx2_Hoxd4	ENSMUST00000064872.13|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000152581.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000176265.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000154079.8|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chrX_+_105626790_105626793	0.189989	Msx2_Hoxd4	ENSMUST00000101296.9|Gm5127|ENSMUSG00000073010.10|predicted gene 5127	ENSMUST00000101297.4|Gm5127|ENSMUSG00000073010.10|predicted gene 5127
mm39_v1_chr12_+_108145802_108145842	0.189964	Msx2_Hoxd4	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr9_-_96513529_96513670	0.187614	Msx2_Hoxd4	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr6_+_24733239_24733248	0.185953	Msx2_Hoxd4	ENSMUST00000031690.6|Hyal6|ENSMUSG00000029679.8|hyaluronoglucosaminidase 6
mm39_v1_chr15_+_58004793_58004813	0.18117	Msx2_Hoxd4	ENSMUST00000227142.2|Wdyhv1|ENSMUSG00000022359.11|WDYHV motif containing 1	ENSMUST00000226955.2|Wdyhv1|ENSMUSG00000022359.11|WDYHV motif containing 1
mm39_v1_chr6_+_83985684_83985749	0.177956	Msx2_Hoxd4	ENSMUST00000203803.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000204591.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000113823.8|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000153860.4|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr1_+_179788037_179788150	0.175703	Msx2_Hoxd4	ENSMUST00000097453.9|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000111117.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr5_+_107655487_107655487	0.173449	Msx2_Hoxd4	ENSMUST00000143074.2|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr1_+_60948149_60948193	0.171525	Msx2_Hoxd4	ENSMUST00000027164.9|Ctla4|ENSMUSG00000026011.14|cytotoxic T-lymphocyte-associated protein 4
mm39_v1_chr14_+_8283087_8283087	0.170871	Msx2_Hoxd4	ENSMUST00000206298.3|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720	ENSMUST00000216079.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr11_-_99494134_99494134	0.170771	Msx2_Hoxd4	ENSMUST00000072306.4|Gm11938|ENSMUSG00000057674.4|predicted gene 11938
mm39_v1_chr1_+_179788675_179788675	0.170767	Msx2_Hoxd4	ENSMUST00000076687.12|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000097450.10|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000212756.2|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr19_-_47680528_47680535	0.165949	Msx2_Hoxd4	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr5_-_82271183_82271194	0.154073	Msx2_Hoxd4	ENSMUST00000186079.2|1700031L13Rik|ENSMUSG00000099863.2|RIKEN cDNA 1700031L13 gene	ENSMUST00000185607.2|1700031L13Rik|ENSMUSG00000099863.2|RIKEN cDNA 1700031L13 gene
mm39_v1_chr7_-_101494472_101494549	0.147115	Msx2_Hoxd4	ENSMUST00000211566.2|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)	ENSMUST00000094141.7|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)	ENSMUST00000209329.2|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)
mm39_v1_chr9_+_38788422_38788422	0.144989	Msx2_Hoxd4	ENSMUST00000078289.3|Olfr926|ENSMUSG00000064333.3|olfactory receptor 926
mm39_v1_chr15_-_36164963_36165015	0.137779	Msx2_Hoxd4	ENSMUST00000227793.2|Fbxo43|ENSMUSG00000048230.7|F-box protein 43
mm39_v1_chr11_-_99457456_99457471	0.13763	Msx2_Hoxd4	ENSMUST00000055502.5|Krtap3-1|ENSMUSG00000047564.5|keratin associated protein 3-1
mm39_v1_chr1_+_128079543_128079572	0.130772	Msx2_Hoxd4	ENSMUST00000189317.3|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1
mm39_v1_chrX_+_106836189_106836215	0.126738	Msx2_Hoxd4	ENSMUST00000101292.9|Tent5d|ENSMUSG00000073007.11|terminal nucleotidyltransferase 5D
mm39_v1_chr2_+_83554741_83554763	0.12619	Msx2_Hoxd4	ENSMUST00000028499.11|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr4_+_109092459_109092459	0.125792	Msx2_Hoxd4	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr10_-_23977810_23977810	0.124705	Msx2_Hoxd4	ENSMUST00000170267.3|Taar8c|ENSMUSG00000100004.2|trace amine-associated receptor 8C
mm39_v1_chr8_+_107757847_107757862	0.123752	Msx2_Hoxd4	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr14_+_54413727_54413742	0.116673	Msx2_Hoxd4	ENSMUST00000103701.2|Traj41|ENSMUSG00000076889.2|T cell receptor alpha joining 41
mm39_v1_chr2_+_83554868_83554899	0.113949	Msx2_Hoxd4	ENSMUST00000111740.9|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr9_+_55448432_55448493	0.10846	Msx2_Hoxd4	ENSMUST00000034869.11|Isl2|ENSMUSG00000032318.13|insulin related protein 2 (islet 2)
mm39_v1_chr14_-_52273600_52273600	0.107638	Msx2_Hoxd4	ENSMUST00000214342.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr4_-_52859227_52859227	0.105682	Msx2_Hoxd4	ENSMUST00000107670.3|Olfr273|ENSMUSG00000049648.5|olfactory receptor 273
mm39_v1_chr3_-_85648696_85648696	0.0966245	Msx2_Hoxd4	ENSMUST00000094148.6|Fam160a1|ENSMUSG00000051000.18|family with sequence similarity 160, member A1
mm39_v1_chr8_-_3675274_3675288	0.0939053	Msx2_Hoxd4	ENSMUST00000004749.7|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr13_+_22508759_22508759	0.0900001	Msx2_Hoxd4	ENSMUST00000226225.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197	ENSMUST00000227017.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197
mm39_v1_chr14_+_54436247_54436247	0.0854417	Msx2_Hoxd4	ENSMUST00000103720.2|Traj21|ENSMUSG00000076908.2|T cell receptor alpha joining 21
mm39_v1_chr18_+_36414122_36414204	0.0729082	Msx2_Hoxd4	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr6_-_67468831_67468850	0.0639562	Msx2_Hoxd4	ENSMUST00000118364.2|Il23r|ENSMUSG00000049093.10|interleukin 23 receptor
mm39_v1_chr2_-_88519531_88519531	0.0591712	Msx2_Hoxd4	ENSMUST00000213545.2|Olfr1195|ENSMUSG00000075121.3|olfactory receptor 1195
mm39_v1_chr2_-_45001141_45001186	0.0585187	Msx2_Hoxd4	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr9_-_106666329_106666408	0.0563766	Msx2_Hoxd4	ENSMUST00000046502.7|Rad54l2|ENSMUSG00000040661.7|RAD54 like 2 (S. cerevisiae)
mm39_v1_chr12_+_117652526_117652587	0.052967	Msx2_Hoxd4	ENSMUST00000222185.2|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr6_-_84565613_84565629	0.0520745	Msx2_Hoxd4	ENSMUST00000204146.3|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr11_-_99441687_99441693	0.0511656	Msx2_Hoxd4	ENSMUST00000092700.5|Krtap3-3|ENSMUSG00000069722.5|keratin associated protein 3-3
mm39_v1_chr6_+_34722926_34722942	0.0503671	Msx2_Hoxd4	ENSMUST00000126181.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr14_-_50558325_50558325	0.0487323	Msx2_Hoxd4	ENSMUST00000050928.3|Olfr734|ENSMUSG00000045306.4|olfactory receptor 734
mm39_v1_chr17_+_71923210_71923254	0.0484452	Msx2_Hoxd4	ENSMUST00000047086.10|Wdr43|ENSMUSG00000041057.11|WD repeat domain 43
mm39_v1_chr2_+_132689640_132689661	0.0446298	Msx2_Hoxd4	ENSMUST00000124836.8|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1	ENSMUST00000154160.2|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1
mm39_v1_chr4_+_19605451_19605451	0.0440962	Msx2_Hoxd4	ENSMUST00000108250.3|Gm12353|ENSMUSG00000078772.3|predicted gene 12353
mm39_v1_chr10_+_115405891_115405927	0.0374988	Msx2_Hoxd4	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr6_+_37847721_37847892	0.0341405	Msx2_Hoxd4	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr6_+_34722887_34722916	0.0322012	Msx2_Hoxd4	ENSMUST00000123823.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000136907.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr7_+_140261864_140261864	0.0320178	Msx2_Hoxd4	ENSMUST00000214637.3|Olfr45|ENSMUSG00000066122.7|olfactory receptor 45
mm39_v1_chr5_+_117378510_117378529	0.0316546	Msx2_Hoxd4	ENSMUST00000111975.3|Taok3|ENSMUSG00000061288.14|TAO kinase 3
mm39_v1_chr9_+_38240356_38240494	0.0231051	Msx2_Hoxd4	ENSMUST00000214155.2|Olfr25|ENSMUSG00000058270.4|olfactory receptor 25	ENSMUST00000212354.3|Olfr25|ENSMUSG00000058270.4|olfactory receptor 25
mm39_v1_chr6_-_131293361_131293361	0.0200775	Msx2_Hoxd4	ENSMUST00000121078.2|Styk1|ENSMUSG00000032899.15|serine/threonine/tyrosine kinase 1
mm39_v1_chr2_+_76480606_76480627	0.0165247	Msx2_Hoxd4	ENSMUST00000099986.3|Pjvk|ENSMUSG00000075267.10|pejvakin
mm39_v1_chr13_+_23879775_23879797	0.0146855	Msx2_Hoxd4	ENSMUST00000041052.5|H1f6|ENSMUSG00000036211.5|H1.6 linker histone, cluster member
mm39_v1_chr7_+_107497109_107497109	0.0145483	Msx2_Hoxd4	ENSMUST00000209670.4|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472	ENSMUST00000216937.3|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472
mm39_v1_chr7_+_107679062_107679062	0.0130204	Msx2_Hoxd4	ENSMUST00000213601.2|Olfr481|ENSMUSG00000054236.7|olfactory receptor 481
mm39_v1_chr6_-_131664458_131664458	0.0107313	Msx2_Hoxd4	ENSMUST00000053652.6|Tas2r105|ENSMUSG00000051153.6|taste receptor, type 2, member 105
mm39_v1_chr9_-_112016834_112016930	0.00928796	Msx2_Hoxd4	ENSMUST00000111872.9|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21	ENSMUST00000164754.9|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21
mm39_v1_chr11_+_96183294_96183334	0.00663703	Msx2_Hoxd4	ENSMUST00000173432.3|Hoxb6|ENSMUSG00000000690.6|homeobox B6
mm39_v1_chr2_-_88559941_88559941	0.00349914	Msx2_Hoxd4	ENSMUST00000099815.2|Olfr1197|ENSMUSG00000075119.3|olfactory receptor 1197
