mm39_v1_chr2_-_32977182_32977265	6.04557	Msx3	ENSMUST00000102810.10|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr2_-_32976378_32976452	5.93739	Msx3	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr2_+_96148418_96148561	5.39547	Msx3	ENSMUST00000135431.8|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C	ENSMUST00000162807.9|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C
mm39_v1_chr11_+_69909245_69909310	4.89211	Msx3	ENSMUST00000231415.2|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4	ENSMUST00000108588.9|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chr1_-_52230062_52230090	4.73802	Msx3	ENSMUST00000156887.8|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000129107.2|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr15_+_82136598_82136676	4.70474	Msx3	ENSMUST00000136948.3|1500009C09Rik|ENSMUSG00000068099.6|RIKEN cDNA 1500009C09 gene
mm39_v1_chr10_+_81093110_81093144	4.55841	Msx3	ENSMUST00000117488.8|Matk|ENSMUSG00000004933.18|megakaryocyte-associated tyrosine kinase	ENSMUST00000105328.10|Matk|ENSMUSG00000004933.18|megakaryocyte-associated tyrosine kinase	ENSMUST00000121205.8|Matk|ENSMUSG00000004933.18|megakaryocyte-associated tyrosine kinase
mm39_v1_chr14_+_60615128_60615153	4.36375	Msx3	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr18_+_37952556_37952571	4.11739	Msx3	ENSMUST00000055935.11|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr3_+_66893280_66893326	3.88919	Msx3	ENSMUST00000161726.2|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000160504.2|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr3_+_66892979_66893026	3.58966	Msx3	ENSMUST00000162362.8|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065074.14|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065047.13|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr8_-_25215778_25215834	3.57794	Msx3	ENSMUST00000171438.8|Adam3|ENSMUSG00000031553.17|a disintegrin and metallopeptidase domain 3 (cyritestin)	ENSMUST00000171611.9|Adam3|ENSMUSG00000031553.17|a disintegrin and metallopeptidase domain 3 (cyritestin)
mm39_v1_chr12_+_102094977_102094997	3.52897	Msx3	ENSMUST00000159329.8|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr10_-_75946790_75946796	3.3492	Msx3	ENSMUST00000120757.2|Slc5a4b|ENSMUSG00000020226.10|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm39_v1_chr19_+_13208692_13208692	3.22978	Msx3	ENSMUST00000207246.4|Olfr1463|ENSMUSG00000096365.5|olfactory receptor 1463
mm39_v1_chr16_+_49519561_49519667	3.21416	Msx3	ENSMUST00000046777.11|Ift57|ENSMUSG00000032965.12|intraflagellar transport 57	ENSMUST00000142682.9|Ift57|ENSMUSG00000032965.12|intraflagellar transport 57
mm39_v1_chrX_-_74621828_74621854	3.13869	Msx3	ENSMUST00000033545.6|Rab39b|ENSMUSG00000031202.6|RAB39B, member RAS oncogene family
mm39_v1_chr5_+_14564932_14565007	3.11562	Msx3	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr3_+_66893031_66893073	3.10096	Msx3	ENSMUST00000046542.13|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000162693.8|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr7_+_45271229_45271249	2.96546	Msx3	ENSMUST00000033100.5|Izumo1|ENSMUSG00000064158.7|izumo sperm-egg fusion 1
mm39_v1_chr11_-_99134885_99134964	2.89726	Msx3	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr4_+_102112189_102112200	2.88867	Msx3	ENSMUST00000106908.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr12_+_72488625_72488640	2.87973	Msx3	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr6_+_8948608_8948619	2.75548	Msx3	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr2_+_83642910_83642987	2.70316	Msx3	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr18_+_37952596_37952623	2.53821	Msx3	ENSMUST00000193890.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5	ENSMUST00000193941.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr2_+_87696836_87696836	2.51718	Msx3	ENSMUST00000213308.3|Olfr1152|ENSMUSG00000045225.5|olfactory receptor 1152
mm39_v1_chr18_+_37827413_37827444	2.45527	Msx3	ENSMUST00000193414.2|Pcdhga5|ENSMUSG00000103567.2|protocadherin gamma subfamily A, 5
mm39_v1_chr1_-_171854818_171854880	2.3746	Msx3	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr2_+_124978518_124978553	2.33765	Msx3	ENSMUST00000238754.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr7_+_101545547_101545638	2.30699	Msx3	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr5_+_88731386_88731449	2.23946	Msx3	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr1_+_104696235_104696254	2.16212	Msx3	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr8_+_107757847_107757862	2.05515	Msx3	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr15_+_38662158_38662240	2.01687	Msx3	ENSMUST00000022904.8|Atp6v1c1|ENSMUSG00000022295.9|ATPase, H+ transporting, lysosomal V1 subunit C1	ENSMUST00000228820.2|Atp6v1c1|ENSMUSG00000022295.9|ATPase, H+ transporting, lysosomal V1 subunit C1
mm39_v1_chr16_-_29363671_29363687	2.01595	Msx3	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr5_+_88731366_88731382	1.9884	Msx3	ENSMUST00000199312.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr2_+_124978612_124978689	1.94227	Msx3	ENSMUST00000099452.3|Ctxn2|ENSMUSG00000074872.4|cortexin 2	ENSMUST00000238377.2|Ctxn2|ENSMUSG00000074872.4|cortexin 2
mm39_v1_chr17_+_34457868_34457938	1.88082	Msx3	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chrX_-_111315519_111315519	1.86035	Msx3	ENSMUST00000124335.8|Satl1|ENSMUSG00000025527.10|spermidine/spermine N1-acetyl transferase-like 1
mm39_v1_chr6_-_135231324_135231354	1.85944	Msx3	ENSMUST00000111911.9|Gsg1|ENSMUSG00000030206.14|germ cell associated 1	ENSMUST00000111910.4|Gsg1|ENSMUSG00000030206.14|germ cell associated 1
mm39_v1_chr7_+_140181182_140181253	1.84744	Msx3	ENSMUST00000214180.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46	ENSMUST00000211771.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46
mm39_v1_chr7_+_143838191_143838282	1.80089	Msx3	ENSMUST00000097929.4|Shank2|ENSMUSG00000037541.23|SH3 and multiple ankyrin repeat domains 2
mm39_v1_chr10_+_29074950_29074950	1.77979	Msx3	ENSMUST00000217011.2|Gm49353|ENSMUSG00000110723.2|predicted gene, 49353
mm39_v1_chrX_-_142716200_142716307	1.73598	Msx3	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr3_+_18002574_18002614	1.73587	Msx3	ENSMUST00000029080.5|Cypt12|ENSMUSG00000027564.5|cysteine-rich perinuclear theca 12
mm39_v1_chr1_-_97055931_97055982	1.68924	Msx3	ENSMUST00000027569.14|Slco6c1|ENSMUSG00000026331.14|solute carrier organic anion transporter family, member 6c1
mm39_v1_chr13_-_78344492_78344561	1.68694	Msx3	ENSMUST00000125176.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr3_-_41696906_41696984	1.66045	Msx3	ENSMUST00000026866.15|Sclt1|ENSMUSG00000059834.13|sodium channel and clathrin linker 1
mm39_v1_chr19_-_11261177_11261249	1.61177	Msx3	ENSMUST00000186937.7|Ms4a5|ENSMUSG00000054523.14|membrane-spanning 4-domains, subfamily A, member 5	ENSMUST00000067673.13|Ms4a5|ENSMUSG00000054523.14|membrane-spanning 4-domains, subfamily A, member 5
mm39_v1_chr1_-_158183894_158183914	1.60361	Msx3	ENSMUST00000004133.11|Brinp2|ENSMUSG00000004031.14|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm39_v1_chr5_+_104350475_104350490	1.51536	Msx3	ENSMUST00000066708.7|Dmp1|ENSMUSG00000029307.8|dentin matrix protein 1
mm39_v1_chr9_-_53882530_53882632	1.50648	Msx3	ENSMUST00000048409.14|Elmod1|ENSMUSG00000041986.17|ELMO/CED-12 domain containing 1
mm39_v1_chr6_+_134617903_134617977	1.4186	Msx3	ENSMUST00000062755.10|Borcs5|ENSMUSG00000042992.16|BLOC-1 related complex subunit 5
mm39_v1_chrX_+_106299484_106299671	1.39334	Msx3	ENSMUST00000101294.9|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174	ENSMUST00000118820.8|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174	ENSMUST00000120971.8|Gpr174|ENSMUSG00000073008.12|G protein-coupled receptor 174
mm39_v1_chr12_-_114443071_114443116	1.37063	Msx3	ENSMUST00000103492.2|Ighv10-1|ENSMUSG00000095981.2|immunoglobulin heavy variable 10-1
mm39_v1_chr13_+_68011442_68011447	1.35908	Msx3	ENSMUST00000078471.7|BC048507|ENSMUSG00000064063.7|cDNA sequence BC048507
mm39_v1_chr4_+_134658209_134658221	1.3349	Msx3	ENSMUST00000030622.3|Syf2|ENSMUSG00000028821.9|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm39_v1_chr6_-_135231168_135231288	1.32147	Msx3	ENSMUST00000111909.8|Gsg1|ENSMUSG00000030206.14|germ cell associated 1
mm39_v1_chr10_-_84963841_84963900	1.27992	Msx3	ENSMUST00000214193.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000050813.4|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000217027.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2
mm39_v1_chr4_+_102111936_102111959	1.27587	Msx3	ENSMUST00000106907.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr2_-_45007407_45007421	1.23507	Msx3	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr8_+_66964401_66964417	1.21347	Msx3	ENSMUST00000002025.5|Tktl2|ENSMUSG00000025519.6|transketolase-like 2	ENSMUST00000183187.2|Tktl2|ENSMUSG00000025519.6|transketolase-like 2
mm39_v1_chr7_+_101546059_101546168	1.17227	Msx3	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chrX_+_152506577_152506642	1.14293	Msx3	ENSMUST00000140575.8|Nbdy|ENSMUSG00000086316.9|negative regulator of P-body association	ENSMUST00000208373.2|Nbdy|ENSMUSG00000086316.9|negative regulator of P-body association	ENSMUST00000185492.7|Nbdy|ENSMUSG00000086316.9|negative regulator of P-body association	ENSMUST00000149514.8|Nbdy|ENSMUSG00000086316.9|negative regulator of P-body association
mm39_v1_chr2_+_163500290_163500430	1.07628	Msx3	ENSMUST00000164399.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000064703.13|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000099105.9|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000152418.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000126182.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000131228.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma
mm39_v1_chr14_+_122272069_122272086	1.0662	Msx3	ENSMUST00000045976.7|Timm8a2|ENSMUSG00000071229.4|translocase of inner mitochondrial membrane 8A2
mm39_v1_chr4_-_43710231_43710255	1.02657	Msx3	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr17_+_30940015_30940015	0.998658	Msx3	ENSMUST00000236948.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8
mm39_v1_chrX_-_88976458_88976458	0.959932	Msx3	ENSMUST00000088146.3|4930415L06Rik|ENSMUSG00000035387.6|RIKEN cDNA 4930415L06 gene
mm39_v1_chr14_+_65612788_65612842	0.94531	Msx3	ENSMUST00000224687.2|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr2_+_121786892_121786970	0.872592	Msx3	ENSMUST00000110578.8|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr2_-_174188505_174188505	0.86044	Msx3	ENSMUST00000168292.2|Gm20721|ENSMUSG00000090625.2|predicted gene, 20721
mm39_v1_chr2_+_121787131_121787145	0.841535	Msx3	ENSMUST00000110574.8|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chrX_+_9751861_9751861	0.831892	Msx3	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr17_-_24746911_24746924	0.811411	Msx3	ENSMUST00000176652.8|Traf7|ENSMUSG00000052752.16|TNF receptor-associated factor 7
mm39_v1_chr8_+_57964921_57964947	0.80654	Msx3	ENSMUST00000067925.8|Hmgb2|ENSMUSG00000054717.8|high mobility group box 2
mm39_v1_chr11_+_109434519_109434580	0.805077	Msx3	ENSMUST00000106696.2|Arsg|ENSMUSG00000020604.14|arylsulfatase G
mm39_v1_chr3_-_129834788_129834855	0.801559	Msx3	ENSMUST00000168644.3|Sec24b|ENSMUSG00000001052.16|Sec24 related gene family, member B (S. cerevisiae)
mm39_v1_chr10_+_88215079_88215164	0.796383	Msx3	ENSMUST00000130301.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	ENSMUST00000020251.10|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr9_-_40895756_40895769	0.795205	Msx3	ENSMUST00000180872.9|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule
mm39_v1_chr5_-_140986312_140986406	0.780842	Msx3	ENSMUST00000085786.7|Card11|ENSMUSG00000036526.9|caspase recruitment domain family, member 11
mm39_v1_chr7_+_89814713_89814756	0.75813	Msx3	ENSMUST00000207084.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr5_-_105198913_105198913	0.72802	Msx3	ENSMUST00000112718.5|Gbp8|ENSMUSG00000034438.17|guanylate-binding protein 8
mm39_v1_chr3_+_94745009_94745034	0.678324	Msx3	ENSMUST00000107266.8|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain	ENSMUST00000042402.12|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain	ENSMUST00000107269.2|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr16_+_11224481_11224539	0.661959	Msx3	ENSMUST00000122168.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr2_+_87686206_87686206	0.654133	Msx3	ENSMUST00000217376.2|Olfr1151|ENSMUSG00000047039.5|olfactory receptor 1151
mm39_v1_chr17_+_49922129_49922200	0.647056	Msx3	ENSMUST00000162854.2|Kif6|ENSMUSG00000023999.15|kinesin family member 6
mm39_v1_chr17_+_21603985_21604029	0.606489	Msx3	ENSMUST00000056107.11|Zfp677|ENSMUSG00000062743.10|zinc finger protein 677	ENSMUST00000162659.2|Zfp677|ENSMUSG00000062743.10|zinc finger protein 677
mm39_v1_chr11_+_6366259_6366319	0.572921	Msx3	ENSMUST00000213200.2|Ppia|ENSMUSG00000071866.13|peptidylprolyl isomerase A
mm39_v1_chr2_-_111843053_111843053	0.566031	Msx3	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr11_+_53324126_53324184	0.5615	Msx3	ENSMUST00000018382.7|Gdf9|ENSMUSG00000018238.7|growth differentiation factor 9
mm39_v1_chr2_+_89642395_89642395	0.497723	Msx3	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr2_-_150097511_150097511	0.396452	Msx3	ENSMUST00000063463.6|Gm21994|ENSMUSG00000074735.3|predicted gene 21994
mm39_v1_chrX_-_142716085_142716149	0.379001	Msx3	ENSMUST00000087313.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr13_+_22508759_22508759	0.364819	Msx3	ENSMUST00000226225.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197	ENSMUST00000227017.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197
mm39_v1_chr7_+_3648264_3648351	0.348827	Msx3	ENSMUST00000206287.2|Cnot3|ENSMUSG00000035632.17|CCR4-NOT transcription complex, subunit 3	ENSMUST00000038913.16|Cnot3|ENSMUSG00000035632.17|CCR4-NOT transcription complex, subunit 3
mm39_v1_chr10_+_88214989_88215031	0.340828	Msx3	ENSMUST00000127615.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr1_-_144427302_144427302	0.302857	Msx3	ENSMUST00000184189.3|Rgs21|ENSMUSG00000098509.3|regulator of G-protein signalling 21
mm39_v1_chr3_+_94744844_94744884	0.302386	Msx3	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr11_-_73382303_73382429	0.29668	Msx3	ENSMUST00000119863.2|Olfr381|ENSMUSG00000072708.4|olfactory receptor 381	ENSMUST00000215358.2|Olfr381|ENSMUSG00000072708.4|olfactory receptor 381	ENSMUST00000214623.2|Olfr381|ENSMUSG00000072708.4|olfactory receptor 381
mm39_v1_chr17_-_24746804_24746858	0.21476	Msx3	ENSMUST00000176353.8|Traf7|ENSMUSG00000052752.16|TNF receptor-associated factor 7	ENSMUST00000176237.8|Traf7|ENSMUSG00000052752.16|TNF receptor-associated factor 7
mm39_v1_chr3_+_41697046_41697160	0.203306	Msx3	ENSMUST00000120167.8|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000108065.9|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000146165.8|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000192193.6|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000119572.8|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000026867.14|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed	ENSMUST00000026868.13|D3Ertd751e|ENSMUSG00000025766.15|DNA segment, Chr 3, ERATO Doi 751, expressed
mm39_v1_chr2_-_87504008_87504008	0.199891	Msx3	ENSMUST00000213835.2|Olfr1135|ENSMUSG00000075153.3|olfactory receptor 1135
mm39_v1_chr13_+_19394484_19394513	0.19318	Msx3	ENSMUST00000200495.2|Trgj1|ENSMUSG00000104962.2|T cell receptor gamma joining 1
mm39_v1_chr4_-_14621497_14621506	0.191746	Msx3	ENSMUST00000149633.2|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr9_+_38516398_38516398	0.179799	Msx3	ENSMUST00000217057.2|Olfr914|ENSMUSG00000047050.3|olfactory receptor 914
mm39_v1_chr11_+_94218810_94218858	0.176086	Msx3	ENSMUST00000107818.9|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40	ENSMUST00000051221.13|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40
mm39_v1_chr8_+_57964956_57965008	0.163618	Msx3	ENSMUST00000210871.2|Hmgb2|ENSMUSG00000054717.8|high mobility group box 2
mm39_v1_chr10_-_88214913_88214954	0.154726	Msx3	ENSMUST00000138159.2|Dram1|ENSMUSG00000020057.3|DNA-damage regulated autophagy modulator 1
mm39_v1_chr8_+_46080746_46080791	0.120603	Msx3	ENSMUST00000145458.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000134321.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr13_+_22268610_22268610	0.0854916	Msx3	ENSMUST00000228243.2|Vmn1r188|ENSMUSG00000069299.3|vomeronasal 1 receptor 188	ENSMUST00000226680.2|Vmn1r188|ENSMUSG00000069299.3|vomeronasal 1 receptor 188
mm39_v1_chr1_-_34478753_34478753	0.0700055	Msx3	ENSMUST00000042493.10|Ccdc115|ENSMUSG00000042111.10|coiled-coil domain containing 115
mm39_v1_chr13_+_23191826_23191826	0.0609205	Msx3	ENSMUST00000228758.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213	ENSMUST00000228031.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213	ENSMUST00000227573.2|Vmn1r213|ENSMUSG00000060024.3|vomeronasal 1 receptor 213
mm39_v1_chr13_-_23420117_23420117	0.0537949	Msx3	ENSMUST00000235574.2|Vmn1r222|ENSMUSG00000061022.6|vomeronasal 1 receptor 222	ENSMUST00000226672.3|Vmn1r222|ENSMUSG00000061022.6|vomeronasal 1 receptor 222
mm39_v1_chr1_+_177557380_177557405	0.0259335	Msx3	ENSMUST00000016106.6|1700016C15Rik|ENSMUSG00000015962.6|RIKEN cDNA 1700016C15 gene
mm39_v1_chr19_+_12257218_12257303	0.0215381	Msx3	ENSMUST00000207186.4|Olfr1434|ENSMUSG00000095640.5|olfactory receptor 1434	ENSMUST00000207915.2|Olfr1434|ENSMUSG00000095640.5|olfactory receptor 1434
mm39_v1_chr3_+_82962823_82962893	0.0123919	Msx3	ENSMUST00000150268.8|Plrg1|ENSMUSG00000027998.12|pleiotropic regulator 1	ENSMUST00000122128.2|Plrg1|ENSMUSG00000027998.12|pleiotropic regulator 1
mm39_v1_chr9_+_72714156_72714156	0.00239304	Msx3	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
