mm39_v1_chr8_+_96429665_96429698	6.54157	Nkx2-1	ENSMUST00000073139.14|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4	ENSMUST00000080666.8|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4	ENSMUST00000212160.2|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4
mm39_v1_chr16_-_4340920_4340939	5.65911	Nkx2-1	ENSMUST00000090500.10|Srl|ENSMUSG00000022519.15|sarcalumenin	ENSMUST00000023161.8|Srl|ENSMUSG00000022519.15|sarcalumenin
mm39_v1_chr6_+_72281587_72281604	5.63001	Nkx2-1	ENSMUST00000183018.8|Sftpb|ENSMUSG00000056370.18|surfactant associated protein B	ENSMUST00000182014.10|Sftpb|ENSMUSG00000056370.18|surfactant associated protein B
mm39_v1_chr9_-_121621544_121621573	4.57114	Nkx2-1	ENSMUST00000035110.11|Hhatl|ENSMUSG00000032523.12|hedgehog acyltransferase-like
mm39_v1_chr7_+_34885782_34885833	3.78357	Nkx2-1	ENSMUST00000135452.8|Slc7a10|ENSMUSG00000030495.13|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	ENSMUST00000001854.12|Slc7a10|ENSMUSG00000030495.13|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm39_v1_chr8_+_55024446_55024504	3.49096	Nkx2-1	ENSMUST00000239166.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239106.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239152.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5
mm39_v1_chr9_-_37058590_37058703	3.38766	Nkx2-1	ENSMUST00000080754.12|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2	ENSMUST00000188057.7|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2	ENSMUST00000039674.13|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2
mm39_v1_chr9_+_110595224_110595310	3.22805	Nkx2-1	ENSMUST00000136695.3|Myl3|ENSMUSG00000059741.14|myosin, light polypeptide 3
mm39_v1_chr3_+_68491487_68491514	3.14128	Nkx2-1	ENSMUST00000182997.3|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr14_-_70761507_70761524	3.08682	Nkx2-1	ENSMUST00000022692.5|Sftpc|ENSMUSG00000022097.5|surfactant associated protein C
mm39_v1_chr1_+_12788720_12788753	2.8662	Nkx2-1	ENSMUST00000088585.10|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr2_+_158452651_158452693	2.86015	Nkx2-1	ENSMUST00000045738.5|Slc32a1|ENSMUSG00000037771.12|solute carrier family 32 (GABA vesicular transporter), member 1
mm39_v1_chr14_+_40853734_40853751	2.83364	Nkx2-1	ENSMUST00000022314.10|Sftpa1|ENSMUSG00000021789.15|surfactant associated protein A1	ENSMUST00000170719.2|Sftpa1|ENSMUSG00000021789.15|surfactant associated protein A1
mm39_v1_chr4_-_41517326_41517338	2.72009	Nkx2-1	ENSMUST00000030152.13|1110017D15Rik|ENSMUSG00000028441.13|RIKEN cDNA 1110017D15 gene	ENSMUST00000095126.5|1110017D15Rik|ENSMUSG00000028441.13|RIKEN cDNA 1110017D15 gene
mm39_v1_chr12_+_103281188_103281224	2.59433	Nkx2-1	ENSMUST00000189885.2|Fam181a|ENSMUSG00000096753.8|family with sequence similarity 181, member A	ENSMUST00000179363.2|Fam181a|ENSMUSG00000096753.8|family with sequence similarity 181, member A
mm39_v1_chr19_-_8816530_8816632	2.57073	Nkx2-1	ENSMUST00000096259.6|Gng3|ENSMUSG00000071658.6|guanine nucleotide binding protein (G protein), gamma 3
mm39_v1_chr19_-_58781709_58781730	2.55824	Nkx2-1	ENSMUST00000166692.2|1700019N19Rik|ENSMUSG00000026931.11|RIKEN cDNA 1700019N19 gene
mm39_v1_chr12_-_84745388_84745605	2.48149	Nkx2-1	ENSMUST00000221905.2|Syndig1l|ENSMUSG00000071234.4|synapse differentiation inducing 1 like	ENSMUST00000222422.2|Syndig1l|ENSMUSG00000071234.4|synapse differentiation inducing 1 like	ENSMUST00000095550.4|Syndig1l|ENSMUSG00000071234.4|synapse differentiation inducing 1 like
mm39_v1_chr7_-_28824440_28824585	2.35912	Nkx2-1	ENSMUST00000214374.2|Ryr1|ENSMUSG00000030592.19|ryanodine receptor 1, skeletal muscle	ENSMUST00000179893.9|Ryr1|ENSMUSG00000030592.19|ryanodine receptor 1, skeletal muscle	ENSMUST00000032813.10|Ryr1|ENSMUSG00000030592.19|ryanodine receptor 1, skeletal muscle
mm39_v1_chr9_+_110075133_110075304	2.31331	Nkx2-1	ENSMUST00000199736.2|Cspg5|ENSMUSG00000032482.10|chondroitin sulfate proteoglycan 5
mm39_v1_chr1_-_163552693_163552801	2.13636	Nkx2-1	ENSMUST00000159679.8|Mettl11b|ENSMUSG00000040113.15|methyltransferase like 11B
mm39_v1_chr2_-_73605684_73605723	2.04042	Nkx2-1	ENSMUST00000112024.10|Chn1|ENSMUSG00000056486.19|chimerin 1	ENSMUST00000180045.8|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr10_+_22520910_22521008	1.98127	Nkx2-1	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr5_-_24806960_24807010	1.95826	Nkx2-1	ENSMUST00000030791.12|Smarcd3|ENSMUSG00000028949.14|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm39_v1_chrX_-_101950075_101950164	1.9554	Nkx2-1	ENSMUST00000120808.8|Dmrtc1a|ENSMUSG00000031323.9|DMRT-like family C1a	ENSMUST00000121197.8|Dmrtc1a|ENSMUSG00000031323.9|DMRT-like family C1a
mm39_v1_chr7_-_30443106_30443156	1.9285	Nkx2-1	ENSMUST00000182634.8|Gapdhs|ENSMUSG00000061099.13|glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
mm39_v1_chr17_+_69071546_69071546	1.91111	Nkx2-1	ENSMUST00000233625.2|L3mbtl4|ENSMUSG00000041565.18|L3MBTL4 histone methyl-lysine binding protein
mm39_v1_chr11_+_7013422_7013489	1.90207	Nkx2-1	ENSMUST00000020706.5|Adcy1|ENSMUSG00000020431.6|adenylate cyclase 1
mm39_v1_chr16_+_17716480_17716523	1.89427	Nkx2-1	ENSMUST00000055374.8|Tssk2|ENSMUSG00000045521.8|testis-specific serine kinase 2
mm39_v1_chr3_+_135053762_135053857	1.87419	Nkx2-1	ENSMUST00000159658.8|Slc9b1|ENSMUSG00000050150.17|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1	ENSMUST00000078568.12|Slc9b1|ENSMUSG00000050150.17|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1
mm39_v1_chr19_-_5452521_5452556	1.8594	Nkx2-1	ENSMUST00000235569.2|Tsga10ip|ENSMUSG00000039330.6|testis specific 10 interacting protein
mm39_v1_chr2_+_67276338_67276353	1.82789	Nkx2-1	ENSMUST00000239060.2|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2	ENSMUST00000028410.4|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2	ENSMUST00000112347.8|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2	ENSMUST00000238878.2|Xirp2|ENSMUSG00000027022.15|xin actin-binding repeat containing 2
mm39_v1_chr9_-_4796217_4796267	1.7825	Nkx2-1	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr6_-_41613322_41613343	1.72757	Nkx2-1	ENSMUST00000031902.7|Trpv6|ENSMUSG00000029868.15|transient receptor potential cation channel, subfamily V, member 6
mm39_v1_chr15_+_66542598_66542603	1.71127	Nkx2-1	ENSMUST00000065916.14|Tg|ENSMUSG00000053469.15|thyroglobulin
mm39_v1_chr13_+_110039620_110039645	1.60647	Nkx2-1	ENSMUST00000120664.8|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr2_+_177760959_177760977	1.58	Nkx2-1	ENSMUST00000108916.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr2_-_73722874_73722900	1.52964	Nkx2-1	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr15_-_76419131_76419155	1.52366	Nkx2-1	ENSMUST00000230604.2|Tmem249|ENSMUSG00000116376.2|transmembrane protein 249
mm39_v1_chr18_+_37276556_37276556	1.51042	Nkx2-1	ENSMUST00000047479.3|Pcdhac2|ENSMUSG00000102697.2|protocadherin alpha subfamily C, 2
mm39_v1_chr11_+_101046708_101046748	1.48733	Nkx2-1	ENSMUST00000043654.10|Tubg2|ENSMUSG00000045007.10|tubulin, gamma 2
mm39_v1_chr19_-_11243530_11243605	1.45743	Nkx2-1	ENSMUST00000169159.3|Ms4a1|ENSMUSG00000024673.10|membrane-spanning 4-domains, subfamily A, member 1
mm39_v1_chr13_+_93441447_93441786	1.45272	Nkx2-1	ENSMUST00000109497.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109498.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000060490.11|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109492.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109496.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109495.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chrX_+_55391749_55391775	1.44569	Nkx2-1	ENSMUST00000101560.4|Zfp449|ENSMUSG00000073176.5|zinc finger protein 449
mm39_v1_chr15_-_64254754_64254784	1.42462	Nkx2-1	ENSMUST00000177374.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000110114.10|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000110115.9|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000023008.16|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr1_-_80191649_80191666	1.41574	Nkx2-1	ENSMUST00000058748.2|Fam124b|ENSMUSG00000043230.3|family with sequence similarity 124, member B
mm39_v1_chr7_+_28392456_28392569	1.41346	Nkx2-1	ENSMUST00000151227.2|Fbxo27|ENSMUSG00000037463.15|F-box protein 27	ENSMUST00000108281.8|Fbxo27|ENSMUSG00000037463.15|F-box protein 27
mm39_v1_chr7_-_34974953_34974994	1.39751	Nkx2-1	ENSMUST00000238407.2|Wdr88|ENSMUSG00000118454.2|WD repeat domain 88
mm39_v1_chr9_-_4796142_4796159	1.37948	Nkx2-1	ENSMUST00000063508.15|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr2_+_177760768_177760955	1.31313	Nkx2-1	ENSMUST00000108917.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr7_-_4755971_4756093	1.2331	Nkx2-1	ENSMUST00000183971.8|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000182173.2|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000182738.8|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000182111.8|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000184143.8|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000182048.2|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2	ENSMUST00000063324.14|Cox6b2|ENSMUSG00000051811.15|cytochrome c oxidase subunit 6B2
mm39_v1_chrX_+_110154017_110154030	1.22061	Nkx2-1	ENSMUST00000210720.3|Cylc1|ENSMUSG00000073001.5|cylicin, basic protein of sperm head cytoskeleton 1
mm39_v1_chr1_-_54233207_54233207	1.21695	Nkx2-1	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr17_+_34062059_34062104	1.21562	Nkx2-1	ENSMUST00000002379.15|Cd320|ENSMUSG00000002308.17|CD320 antigen
mm39_v1_chr18_+_24842493_24842512	1.19659	Nkx2-1	ENSMUST00000037097.9|Fhod3|ENSMUSG00000034295.11|formin homology 2 domain containing 3	ENSMUST00000234526.2|Fhod3|ENSMUSG00000034295.11|formin homology 2 domain containing 3	ENSMUST00000234834.2|Fhod3|ENSMUSG00000034295.11|formin homology 2 domain containing 3
mm39_v1_chr11_+_68989763_68989811	1.19297	Nkx2-1	ENSMUST00000021271.14|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr1_+_74193138_74193162	1.18128	Nkx2-1	ENSMUST00000027372.8|Cxcr2|ENSMUSG00000026180.9|chemokine (C-X-C motif) receptor 2	ENSMUST00000106899.4|Cxcr2|ENSMUSG00000026180.9|chemokine (C-X-C motif) receptor 2
mm39_v1_chr18_-_66993567_66993582	1.15408	Nkx2-1	ENSMUST00000057942.4|Mc4r|ENSMUSG00000047259.4|melanocortin 4 receptor
mm39_v1_chr16_-_38649107_38649116	1.15004	Nkx2-1	ENSMUST00000122078.3|Tex55|ENSMUSG00000022798.9|testis expressed 55
mm39_v1_chr15_-_7427759_7427804	1.15001	Nkx2-1	ENSMUST00000058593.10|Egflam|ENSMUSG00000042961.14|EGF-like, fibronectin type III and laminin G domains
mm39_v1_chr15_-_7427815_7427832	1.13101	Nkx2-1	ENSMUST00000096494.5|Egflam|ENSMUSG00000042961.14|EGF-like, fibronectin type III and laminin G domains
mm39_v1_chr2_-_73722932_73722983	1.1132	Nkx2-1	ENSMUST00000154456.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000090802.11|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000055833.12|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112007.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112016.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr12_+_85871404_85871484	1.10538	Nkx2-1	ENSMUST00000177188.8|Ttll5|ENSMUSG00000012609.20|tubulin tyrosine ligase-like family, member 5	ENSMUST00000095536.10|Ttll5|ENSMUSG00000012609.20|tubulin tyrosine ligase-like family, member 5	ENSMUST00000110220.9|Ttll5|ENSMUSG00000012609.20|tubulin tyrosine ligase-like family, member 5	ENSMUST00000040179.14|Ttll5|ENSMUSG00000012609.20|tubulin tyrosine ligase-like family, member 5
mm39_v1_chr11_+_69920849_69920924	1.05391	Nkx2-1	ENSMUST00000143920.4|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chr1_+_75427343_75427378	1.04156	Nkx2-1	ENSMUST00000037708.10|Asic4|ENSMUSG00000033007.16|acid-sensing (proton-gated) ion channel family member 4
mm39_v1_chr15_-_64254585_64254694	1.03067	Nkx2-1	ENSMUST00000176384.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000175799.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr11_+_69920956_69920981	0.985495	Nkx2-1	ENSMUST00000232115.2|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chrX_-_100463395_100463520	0.95121	Nkx2-1	ENSMUST00000117901.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000120201.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000117637.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000134005.2|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000121520.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3
mm39_v1_chr7_+_28466160_28466252	0.923134	Nkx2-1	ENSMUST00000122915.8|Sirt2|ENSMUSG00000015149.15|sirtuin 2	ENSMUST00000072965.5|Sirt2|ENSMUSG00000015149.15|sirtuin 2	ENSMUST00000170068.9|Sirt2|ENSMUSG00000015149.15|sirtuin 2
mm39_v1_chr4_+_45203914_45203931	0.919157	Nkx2-1	ENSMUST00000107804.2|Frmpd1|ENSMUSG00000035615.13|FERM and PDZ domain containing 1
mm39_v1_chr13_+_105218625_105218635	0.882415	Nkx2-1	ENSMUST00000022232.6|Nt5el|ENSMUSG00000021718.6|5' nucleotidase, ecto-like
mm39_v1_chr14_+_67470884_67471035	0.871158	Nkx2-1	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr11_+_70323452_70323533	0.868343	Nkx2-1	ENSMUST00000084954.13|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000108568.10|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000079056.9|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102564.11|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000124943.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000150076.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102563.2|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2
mm39_v1_chr15_+_80118269_80118372	0.861275	Nkx2-1	ENSMUST00000229138.2|Mief1|ENSMUSG00000022412.15|mitochondrial elongation factor 1	ENSMUST00000166030.2|Mief1|ENSMUSG00000022412.15|mitochondrial elongation factor 1
mm39_v1_chr2_+_89642395_89642395	0.854283	Nkx2-1	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr17_-_26080429_26080484	0.836563	Nkx2-1	ENSMUST00000079461.15|Wdr90|ENSMUSG00000073434.13|WD repeat domain 90	ENSMUST00000176923.9|Wdr90|ENSMUSG00000073434.13|WD repeat domain 90
mm39_v1_chr9_+_55997246_55997291	0.836134	Nkx2-1	ENSMUST00000059206.8|Pstpip1|ENSMUSG00000032322.15|proline-serine-threonine phosphatase-interacting protein 1
mm39_v1_chr1_+_43973167_43973234	0.827076	Nkx2-1	ENSMUST00000087933.10|Tpp2|ENSMUSG00000041763.15|tripeptidyl peptidase II	ENSMUST00000188313.7|Tpp2|ENSMUSG00000041763.15|tripeptidyl peptidase II
mm39_v1_chr9_+_56344700_56344741	0.826323	Nkx2-1	ENSMUST00000239472.2|ENSMUSG00000118653.2|ENSMUSG00000118653.2|ubiquitin-conjugating enzyme E2S (Ube2s) retrogene
mm39_v1_chr2_-_121304521_121304548	0.815419	Nkx2-1	ENSMUST00000056732.4|Mfap1b|ENSMUSG00000048222.4|microfibrillar-associated protein 1B
mm39_v1_chr6_-_98319684_98319715	0.811487	Nkx2-1	ENSMUST00000164491.3|Mdfic2|ENSMUSG00000090667.3|MyoD family inhibitor domain containing 2
mm39_v1_chr15_+_81686622_81686779	0.788702	Nkx2-1	ENSMUST00000109553.10|Tef|ENSMUSG00000022389.16|thyrotroph embryonic factor
mm39_v1_chr1_-_173363523_173363579	0.753161	Nkx2-1	ENSMUST00000139092.8|Ifi214|ENSMUSG00000070501.15|interferon activated gene 214
mm39_v1_chrX_-_100463810_100463970	0.752742	Nkx2-1	ENSMUST00000118092.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3	ENSMUST00000119699.8|Zmym3|ENSMUSG00000031310.17|zinc finger, MYM-type 3
mm39_v1_chr1_+_75427080_75427161	0.731267	Nkx2-1	ENSMUST00000113577.8|Asic4|ENSMUSG00000033007.16|acid-sensing (proton-gated) ion channel family member 4
mm39_v1_chr1_+_85945790_85945806	0.714336	Nkx2-1	ENSMUST00000149469.3|Spata3|ENSMUSG00000026226.17|spermatogenesis associated 3
mm39_v1_chr9_-_119812042_119812114	0.703778	Nkx2-1	ENSMUST00000214058.2|Csrnp1|ENSMUSG00000032515.9|cysteine-serine-rich nuclear protein 1
mm39_v1_chr1_-_136273811_136273884	0.651299	Nkx2-1	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr8_-_46747629_46747708	0.642875	Nkx2-1	ENSMUST00000058636.9|Helt|ENSMUSG00000047171.9|helt bHLH transcription factor
mm39_v1_chr9_-_45923908_45923993	0.64145	Nkx2-1	ENSMUST00000217514.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm39_v1_chr11_-_96868483_96868537	0.631632	Nkx2-1	ENSMUST00000107624.8|Sp2|ENSMUSG00000018678.14|Sp2 transcription factor
mm39_v1_chr3_+_37474422_37474484	0.630115	Nkx2-1	ENSMUST00000029277.13|Spata5|ENSMUSG00000027722.15|spermatogenesis associated 5	ENSMUST00000198968.2|Spata5|ENSMUSG00000027722.15|spermatogenesis associated 5
mm39_v1_chr1_+_178356678_178356699	0.569	Nkx2-1	ENSMUST00000161017.8|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr8_-_40739994_40739994	0.567841	Nkx2-1	ENSMUST00000034014.14|Fgf20|ENSMUSG00000031603.15|fibroblast growth factor 20
mm39_v1_chr4_+_9269285_9269335	0.561716	Nkx2-1	ENSMUST00000038841.14|Clvs1|ENSMUSG00000041216.16|clavesin 1
mm39_v1_chr4_-_124744943_124744997	0.530679	Nkx2-1	ENSMUST00000185036.2|1110065P20Rik|ENSMUSG00000078570.11|RIKEN cDNA 1110065P20 gene
mm39_v1_chr14_+_51351880_51351895	0.520964	Nkx2-1	ENSMUST00000100645.5|Eddm3b|ENSMUSG00000072575.5|epididymal protein 3B
mm39_v1_chr2_-_170248421_170248438	0.52025	Nkx2-1	ENSMUST00000154650.8|Bcas1|ENSMUSG00000013523.14|breast carcinoma amplified sequence 1
mm39_v1_chr17_+_6156738_6156759	0.500195	Nkx2-1	ENSMUST00000142030.8|Tulp4|ENSMUSG00000034377.11|tubby like protein 4
mm39_v1_chr11_+_68858942_68859001	0.495866	Nkx2-1	ENSMUST00000102606.10|Slc25a35|ENSMUSG00000018740.15|solute carrier family 25, member 35	ENSMUST00000018884.6|Slc25a35|ENSMUSG00000018740.15|solute carrier family 25, member 35
mm39_v1_chr2_-_57004933_57005050	0.475024	Nkx2-1	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr17_-_27060539_27060565	0.470089	Nkx2-1	ENSMUST00000015723.5|Nkx2-5|ENSMUSG00000015579.6|NK2 homeobox 5
mm39_v1_chr4_+_129948803_129948840	0.445708	Nkx2-1	ENSMUST00000123617.8|Col16a1|ENSMUSG00000040690.16|collagen, type XVI, alpha 1
mm39_v1_chr17_+_47983587_47983645	0.439796	Nkx2-1	ENSMUST00000152724.2|Usp49|ENSMUSG00000090115.8|ubiquitin specific peptidase 49
mm39_v1_chr11_-_83353787_83353897	0.403272	Nkx2-1	ENSMUST00000021020.13|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000119346.2|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000103209.10|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000108137.9|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)
mm39_v1_chr15_+_76594810_76594931	0.402215	Nkx2-1	ENSMUST00000136840.8|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14	ENSMUST00000127208.8|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14	ENSMUST00000036423.15|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14	ENSMUST00000137649.8|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14	ENSMUST00000155225.2|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14	ENSMUST00000155735.2|Lrrc14|ENSMUSG00000033728.15|leucine rich repeat containing 14
mm39_v1_chr8_-_37419567_37419627	0.390616	Nkx2-1	ENSMUST00000163663.3|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chrX_+_113384008_113384051	0.382454	Nkx2-1	ENSMUST00000113371.8|Klhl4|ENSMUSG00000025597.14|kelch-like 4	ENSMUST00000040504.12|Klhl4|ENSMUSG00000025597.14|kelch-like 4
mm39_v1_chr17_+_6157154_6157182	0.358282	Nkx2-1	ENSMUST00000149756.8|Tulp4|ENSMUSG00000034377.11|tubby like protein 4
mm39_v1_chrX_+_57075981_57076003	0.353526	Nkx2-1	ENSMUST00000088627.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr7_+_30262721_30262792	0.351524	Nkx2-1	ENSMUST00000166960.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000163330.3|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000043273.16|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000163654.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000166510.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000163482.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000167361.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000166257.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000163464.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000171850.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000168931.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4	ENSMUST00000167202.8|U2af1l4|ENSMUSG00000078765.12|U2 small nuclear RNA auxiliary factor 1-like 4
mm39_v1_chr9_+_40092216_40092217	0.328236	Nkx2-1	ENSMUST00000218134.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000216720.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000214763.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986
mm39_v1_chr2_-_156848923_156849074	0.30965	Nkx2-1	ENSMUST00000146413.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103129.9|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103130.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component
mm39_v1_chr2_-_121337120_121337151	0.305269	Nkx2-1	ENSMUST00000089926.6|Mfap1a|ENSMUSG00000068479.6|microfibrillar-associated protein 1A
mm39_v1_chr6_-_38276157_38276225	0.302729	Nkx2-1	ENSMUST00000058524.3|Zc3hav1l|ENSMUSG00000047749.3|zinc finger CCCH-type, antiviral 1-like
mm39_v1_chr4_+_12140263_12140317	0.284749	Nkx2-1	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chrX_+_57076359_57076378	0.278842	Nkx2-1	ENSMUST00000088631.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3	ENSMUST00000088629.4|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr3_-_108108113_108108175	0.248729	Nkx2-1	ENSMUST00000106655.2|Cyb561d1|ENSMUSG00000048796.8|cytochrome b-561 domain containing 1	ENSMUST00000065664.7|Cyb561d1|ENSMUSG00000048796.8|cytochrome b-561 domain containing 1
mm39_v1_chr5_-_97259447_97259491	0.227655	Nkx2-1	ENSMUST00000069453.9|Paqr3|ENSMUSG00000055725.12|progestin and adipoQ receptor family member III	ENSMUST00000112968.2|Paqr3|ENSMUSG00000055725.12|progestin and adipoQ receptor family member III
mm39_v1_chr15_-_10470575_10470613	0.222752	Nkx2-1	ENSMUST00000136591.8|Dnajc21|ENSMUSG00000044224.17|DnaJ heat shock protein family (Hsp40) member C21
mm39_v1_chr2_+_121337226_121337273	0.198492	Nkx2-1	ENSMUST00000099473.10|Wdr76|ENSMUSG00000027242.15|WD repeat domain 76	ENSMUST00000110602.9|Wdr76|ENSMUSG00000027242.15|WD repeat domain 76
mm39_v1_chr7_-_144761806_144761823	0.189735	Nkx2-1	ENSMUST00000208788.2|Smim38|ENSMUSG00000109305.2|small integral membrane protein 38
mm39_v1_chr14_+_26959975_26960003	0.187283	Nkx2-1	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr7_-_28465870_28466065	0.157844	Nkx2-1	ENSMUST00000085851.12|Nfkbib|ENSMUSG00000030595.16|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	ENSMUST00000032815.11|Nfkbib|ENSMUSG00000030595.16|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta
mm39_v1_chr7_+_138448061_138448101	0.152526	Nkx2-1	ENSMUST00000041097.13|Ppp2r2d|ENSMUSG00000041769.14|protein phosphatase 2, regulatory subunit B, delta
mm39_v1_chr4_-_44703413_44703413	0.14636	Nkx2-1	ENSMUST00000186542.2|Pax5|ENSMUSG00000014030.16|paired box 5
mm39_v1_chr7_-_79381911_79381925	0.143046	Nkx2-1	ENSMUST00000178257.3|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chr2_-_88937158_88937179	0.139407	Nkx2-1	ENSMUST00000099806.3|Olfr1220|ENSMUSG00000101480.4|olfactory receptor 1220	ENSMUST00000213288.2|Olfr1220|ENSMUSG00000101480.4|olfactory receptor 1220
mm39_v1_chr10_+_87926932_87926939	0.130398	Nkx2-1	ENSMUST00000048621.8|Pmch|ENSMUSG00000035383.8|pro-melanin-concentrating hormone
mm39_v1_chr3_-_37180093_37180110	0.120672	Nkx2-1	ENSMUST00000029275.6|Il2|ENSMUSG00000027720.8|interleukin 2
mm39_v1_chr5_+_145020640_145020725	0.11849	Nkx2-1	ENSMUST00000031625.15|Arpc1a|ENSMUSG00000029621.15|actin related protein 2/3 complex, subunit 1A
mm39_v1_chr7_+_138448308_138448390	0.116938	Nkx2-1	ENSMUST00000155672.8|Ppp2r2d|ENSMUSG00000041769.14|protein phosphatase 2, regulatory subunit B, delta
mm39_v1_chrX_+_113384297_113384311	0.0868386	Nkx2-1	ENSMUST00000133447.2|Klhl4|ENSMUSG00000025597.14|kelch-like 4
mm39_v1_chr11_-_99228756_99228793	0.0792631	Nkx2-1	ENSMUST00000100482.3|Krt26|ENSMUSG00000075570.3|keratin 26
mm39_v1_chr2_+_71811526_71811631	0.0720526	Nkx2-1	ENSMUST00000090826.12|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4	ENSMUST00000102698.10|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4
mm39_v1_chr11_-_118139312_118139330	0.0636422	Nkx2-1	ENSMUST00000100181.11|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr3_+_90201388_90201397	0.0554167	Nkx2-1	ENSMUST00000199607.5|Gatad2b|ENSMUSG00000042390.10|GATA zinc finger domain containing 2B
mm39_v1_chr4_-_109522502_109522569	0.0426447	Nkx2-1	ENSMUST00000063531.5|Cdkn2c|ENSMUSG00000028551.15|cyclin dependent kinase inhibitor 2C
mm39_v1_chr11_-_120344299_120344326	0.0358732	Nkx2-1	ENSMUST00000026452.3|Pde6g|ENSMUSG00000025386.3|phosphodiesterase 6G, cGMP-specific, rod, gamma
mm39_v1_chr7_+_101875019_101875030	0.0303617	Nkx2-1	ENSMUST00000142873.8|Pgap2|ENSMUSG00000030990.19|post-GPI attachment to proteins 2
mm39_v1_chr4_-_9643636_9643717	0.0259465	Nkx2-1	ENSMUST00000108333.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108334.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000108335.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000152526.8|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase	ENSMUST00000103004.10|Asph|ENSMUSG00000028207.19|aspartate-beta-hydroxylase
mm39_v1_chr11_+_80319424_80319484	0.0173815	Nkx2-1	ENSMUST00000173938.8|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	ENSMUST00000017572.14|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm39_v1_chr4_-_98271469_98271543	0.0150554	Nkx2-1	ENSMUST00000143116.2|Tm2d1|ENSMUSG00000028563.17|TM2 domain containing 1	ENSMUST00000030292.12|Tm2d1|ENSMUSG00000028563.17|TM2 domain containing 1	ENSMUST00000102793.11|Tm2d1|ENSMUSG00000028563.17|TM2 domain containing 1
mm39_v1_chr11_-_99979052_99979096	0.0120028	Nkx2-1	ENSMUST00000107419.2|Krt32|ENSMUSG00000046095.6|keratin 32
mm39_v1_chr6_+_113303929_113303974	0.00695315	Nkx2-1	ENSMUST00000032406.15|Ogg1|ENSMUSG00000030271.15|8-oxoguanine DNA-glycosylase 1
mm39_v1_chr13_+_55782814_55782864	0.00633554	Nkx2-1	ENSMUST00000172272.8|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000099479.4|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000223736.2|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46
