mm39_v1_chr6_+_41107047_41107081	6.81996	Nkx2-4	ENSMUST00000103271.2|Trbv13-3|ENSMUSG00000076470.2|T cell receptor beta, variable 13-3
mm39_v1_chr6_+_41098273_41098330	4.54652	Nkx2-4	ENSMUST00000103270.4|Trbv13-2|ENSMUSG00000076469.4|T cell receptor beta, variable 13-2
mm39_v1_chrX_+_106132840_106132943	3.73536	Nkx2-4	ENSMUST00000118666.8|P2ry10|ENSMUSG00000050921.13|purinergic receptor P2Y, G-protein coupled 10	ENSMUST00000053375.4|P2ry10|ENSMUSG00000050921.13|purinergic receptor P2Y, G-protein coupled 10
mm39_v1_chr15_-_100567377_100567411	3.58077	Nkx2-4	ENSMUST00000182814.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000238935.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182068.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182574.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182775.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2
mm39_v1_chr15_-_100567412_100567441	3.4503	Nkx2-4	ENSMUST00000183211.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2
mm39_v1_chr4_-_129467430_129467441	3.2763	Nkx2-4	ENSMUST00000102596.8|Lck|ENSMUSG00000000409.15|lymphocyte protein tyrosine kinase
mm39_v1_chr15_-_78449172_78449230	3.22561	Nkx2-4	ENSMUST00000230952.2|Rac2|ENSMUSG00000033220.8|Rac family small GTPase 2
mm39_v1_chr9_-_14815228_14815245	3.02662	Nkx2-4	ENSMUST00000034409.14|Izumo1r|ENSMUSG00000031933.18|IZUMO1 receptor, JUNO	ENSMUST00000117620.8|Izumo1r|ENSMUSG00000031933.18|IZUMO1 receptor, JUNO
mm39_v1_chr2_+_154390808_154390862	2.79144	Nkx2-4	ENSMUST00000045116.11|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene	ENSMUST00000109709.4|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene
mm39_v1_chr2_+_174485327_174485327	2.71863	Nkx2-4	ENSMUST00000059452.6|Zfp831|ENSMUSG00000050600.6|zinc finger protein 831
mm39_v1_chr1_+_59669482_59669482	2.71289	Nkx2-4	ENSMUST00000190490.2|Gm973|ENSMUSG00000047361.17|predicted gene 973
mm39_v1_chr17_-_57501170_57501191	2.66443	Nkx2-4	ENSMUST00000005976.8|Tnfsf14|ENSMUSG00000005824.8|tumor necrosis factor (ligand) superfamily, member 14
mm39_v1_chr8_-_110305672_110305804	2.5883	Nkx2-4	ENSMUST00000074898.8|Hp|ENSMUSG00000031722.11|haptoglobin
mm39_v1_chr5_+_35156389_35156430	2.34904	Nkx2-4	ENSMUST00000114281.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12	ENSMUST00000114280.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr1_+_100025486_100025486	2.34624	Nkx2-4	ENSMUST00000188735.2|Cntnap5b|ENSMUSG00000067028.12|contactin associated protein-like 5B
mm39_v1_chr2_+_61634797_61634890	2.2799	Nkx2-4	ENSMUST00000048934.15|Tbr1|ENSMUSG00000035033.16|T-box brain transcription factor 1
mm39_v1_chr6_+_29398919_29398930	2.17978	Nkx2-4	ENSMUST00000181464.8|Ccdc136|ENSMUSG00000029769.17|coiled-coil domain containing 136	ENSMUST00000180829.8|Ccdc136|ENSMUSG00000029769.17|coiled-coil domain containing 136
mm39_v1_chrX_-_35755483_35755483	2.13646	Nkx2-4	ENSMUST00000169499.2|Gm14569|ENSMUSG00000091556.9|predicted gene 14569
mm39_v1_chr13_+_83723255_83723329	2.07167	Nkx2-4	ENSMUST00000199167.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000195904.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr7_+_54485336_54485363	2.06476	Nkx2-4	ENSMUST00000082373.8|Luzp2|ENSMUSG00000063297.8|leucine zipper protein 2
mm39_v1_chr1_-_175319842_175320122	1.9955	Nkx2-4	ENSMUST00000195324.6|Rgs7|ENSMUSG00000026527.14|regulator of G protein signaling 7	ENSMUST00000192227.6|Rgs7|ENSMUSG00000026527.14|regulator of G protein signaling 7	ENSMUST00000194555.6|Rgs7|ENSMUSG00000026527.14|regulator of G protein signaling 7
mm39_v1_chr1_-_28819331_28819333	1.98157	Nkx2-4	ENSMUST00000059937.5|Gm597|ENSMUSG00000048411.5|predicted gene 597
mm39_v1_chr15_+_6552270_6552346	1.953	Nkx2-4	ENSMUST00000226412.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr2_-_84865831_84865850	1.90084	Nkx2-4	ENSMUST00000028465.14|P2rx3|ENSMUSG00000027071.15|purinergic receptor P2X, ligand-gated ion channel, 3
mm39_v1_chr10_+_87926932_87926939	1.90072	Nkx2-4	ENSMUST00000048621.8|Pmch|ENSMUSG00000035383.8|pro-melanin-concentrating hormone
mm39_v1_chr13_+_83723743_83723796	1.89365	Nkx2-4	ENSMUST00000198217.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000199210.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr17_+_70828649_70828697	1.81498	Nkx2-4	ENSMUST00000233283.2|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr17_+_70829050_70829139	1.803	Nkx2-4	ENSMUST00000133717.9|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1	ENSMUST00000148486.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr7_-_80554807_80554835	1.79814	Nkx2-4	ENSMUST00000119428.2|Nmb|ENSMUSG00000025723.13|neuromedin B	ENSMUST00000026817.11|Nmb|ENSMUSG00000025723.13|neuromedin B
mm39_v1_chr5_+_35156454_35156528	1.77074	Nkx2-4	ENSMUST00000114283.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr14_+_53853772_53853772	1.74791	Nkx2-4	ENSMUST00000180972.3|Trav12-2|ENSMUSG00000096656.7|T cell receptor alpha variable 12-2
mm39_v1_chr3_-_92496293_92496309	1.74019	Nkx2-4	ENSMUST00000098888.7|Smcp|ENSMUSG00000074435.11|sperm mitochondria-associated cysteine-rich protein
mm39_v1_chr19_-_39637489_39637506	1.69441	Nkx2-4	ENSMUST00000067328.7|Cyp2c67|ENSMUSG00000062624.6|cytochrome P450, family 2, subfamily c, polypeptide 67
mm39_v1_chr18_+_37085673_37085794	1.66457	Nkx2-4	ENSMUST00000192512.6|Pcdha4|ENSMUSG00000104252.6|protocadherin alpha 4	ENSMUST00000192295.2|Pcdha4|ENSMUSG00000104252.6|protocadherin alpha 4	ENSMUST00000115661.5|Gm42416|ENSMUSG00000103458.2|predicted gene, 42416
mm39_v1_chr11_+_110858842_110858868	1.66223	Nkx2-4	ENSMUST00000180023.8|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16	ENSMUST00000106636.8|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16
mm39_v1_chr1_-_88133472_88133504	1.61593	Nkx2-4	ENSMUST00000119972.4|Dnajb3|ENSMUSG00000081984.4|DnaJ heat shock protein family (Hsp40) member B3
mm39_v1_chr3_-_102843406_102843423	1.56095	Nkx2-4	ENSMUST00000199930.2|Sycp1|ENSMUSG00000027855.14|synaptonemal complex protein 1	ENSMUST00000029448.11|Sycp1|ENSMUSG00000027855.14|synaptonemal complex protein 1	ENSMUST00000196988.5|Sycp1|ENSMUSG00000027855.14|synaptonemal complex protein 1
mm39_v1_chr18_+_44096300_44096319	1.55415	Nkx2-4	ENSMUST00000069245.8|Spink5|ENSMUSG00000055561.10|serine peptidase inhibitor, Kazal type 5
mm39_v1_chr14_+_53878403_53878403	1.5323	Nkx2-4	ENSMUST00000184874.2|Trav14-2|ENSMUSG00000095711.6|T cell receptor alpha variable 14-2
mm39_v1_chr13_+_47347301_47347313	1.51923	Nkx2-4	ENSMUST00000110111.4|Rnf144b|ENSMUSG00000038068.16|ring finger protein 144B
mm39_v1_chr17_+_70829144_70829164	1.46959	Nkx2-4	ENSMUST00000140728.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr3_-_92926364_92926367	1.45672	Nkx2-4	ENSMUST00000193944.2|Lce1m|ENSMUSG00000027912.9|late cornified envelope 1M	ENSMUST00000029520.9|Lce1m|ENSMUSG00000027912.9|late cornified envelope 1M
mm39_v1_chr6_-_122587005_122587046	1.45339	Nkx2-4	ENSMUST00000032211.5|Gdf3|ENSMUSG00000030117.6|growth differentiation factor 3
mm39_v1_chr5_-_23821523_23821596	1.44868	Nkx2-4	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr1_+_85454323_85454323	1.43878	Nkx2-4	ENSMUST00000239236.2|Gm7592|ENSMUSG00000118607.2|predicted gene 7592
mm39_v1_chr3_+_153549846_153549864	1.4254	Nkx2-4	ENSMUST00000044089.4|Asb17|ENSMUSG00000038997.5|ankyrin repeat and SOCS box-containing 17
mm39_v1_chr6_-_97037366_97037381	1.41238	Nkx2-4	ENSMUST00000089295.6|Tafa4|ENSMUSG00000046500.9|TAFA chemokine like family member 4
mm39_v1_chr13_+_35843816_35843853	1.37288	Nkx2-4	ENSMUST00000075220.14|Cdyl|ENSMUSG00000059288.15|chromodomain protein, Y chromosome-like
mm39_v1_chr10_+_4561974_4562075	1.35106	Nkx2-4	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr8_-_79539838_79539904	1.33949	Nkx2-4	ENSMUST00000146824.2|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
mm39_v1_chr5_+_14564932_14565007	1.32307	Nkx2-4	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr6_-_98319684_98319715	1.3207	Nkx2-4	ENSMUST00000164491.3|Mdfic2|ENSMUSG00000090667.3|MyoD family inhibitor domain containing 2
mm39_v1_chr6_+_142359099_142359167	1.28008	Nkx2-4	ENSMUST00000126521.9|Spx|ENSMUSG00000071112.13|spexin hormone	ENSMUST00000211094.2|Spx|ENSMUSG00000071112.13|spexin hormone
mm39_v1_chr17_+_69071546_69071546	1.26009	Nkx2-4	ENSMUST00000233625.2|L3mbtl4|ENSMUSG00000041565.18|L3MBTL4 histone methyl-lysine binding protein
mm39_v1_chrX_+_102674181_102674204	1.23673	Nkx2-4	ENSMUST00000033692.9|Zcchc13|ENSMUSG00000031330.9|zinc finger, CCHC domain containing 13
mm39_v1_chr1_+_175526152_175526167	1.2092	Nkx2-4	ENSMUST00000094288.10|Wdr64|ENSMUSG00000026523.15|WD repeat domain 64	ENSMUST00000171939.8|Wdr64|ENSMUSG00000026523.15|WD repeat domain 64
mm39_v1_chr6_-_29164981_29165005	1.20868	Nkx2-4	ENSMUST00000007993.16|Rbm28|ENSMUSG00000029701.16|RNA binding motif protein 28
mm39_v1_chr8_+_46081213_46081258	1.17834	Nkx2-4	ENSMUST00000130850.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr13_+_83672965_83673010	1.16293	Nkx2-4	ENSMUST00000199432.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000198069.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000197681.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000197722.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000197938.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr3_-_108108113_108108175	1.15159	Nkx2-4	ENSMUST00000106655.2|Cyb561d1|ENSMUSG00000048796.8|cytochrome b-561 domain containing 1	ENSMUST00000065664.7|Cyb561d1|ENSMUSG00000048796.8|cytochrome b-561 domain containing 1
mm39_v1_chr15_-_76419131_76419155	1.14738	Nkx2-4	ENSMUST00000230604.2|Tmem249|ENSMUSG00000116376.2|transmembrane protein 249
mm39_v1_chr5_-_122188165_122188221	1.12412	Nkx2-4	ENSMUST00000154139.8|Cux2|ENSMUSG00000042589.19|cut-like homeobox 2
mm39_v1_chr2_+_29951859_29951880	1.09831	Nkx2-4	ENSMUST00000102866.10|Set|ENSMUSG00000054766.14|SET nuclear oncogene
mm39_v1_chrX_-_142716200_142716307	1.06677	Nkx2-4	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr2_-_34645241_34645268	1.05011	Nkx2-4	ENSMUST00000102800.9|Gapvd1|ENSMUSG00000026867.20|GTPase activating protein and VPS9 domains 1
mm39_v1_chr3_-_10366229_10366262	1.02294	Nkx2-4	ENSMUST00000119761.2|Fabp12|ENSMUSG00000027530.16|fatty acid binding protein 12	ENSMUST00000029043.13|Fabp12|ENSMUSG00000027530.16|fatty acid binding protein 12
mm39_v1_chr6_-_28133324_28133324	1.01929	Nkx2-4	ENSMUST00000131897.2|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr8_-_3904309_3904309	1.00265	Nkx2-4	ENSMUST00000033888.5|Cd209e|ENSMUSG00000040197.5|CD209e antigen
mm39_v1_chr19_+_5497575_5497740	0.998344	Nkx2-4	ENSMUST00000025850.7|Fosl1|ENSMUSG00000024912.7|fos-like antigen 1	ENSMUST00000236774.2|Fosl1|ENSMUSG00000024912.7|fos-like antigen 1
mm39_v1_chr6_+_30568366_30568381	0.981206	Nkx2-4	ENSMUST00000049251.6|Cpa4|ENSMUSG00000039070.6|carboxypeptidase A4
mm39_v1_chr10_+_128067964_128068003	0.957535	Nkx2-4	ENSMUST00000125289.8|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1	ENSMUST00000105242.8|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1
mm39_v1_chr11_+_101623776_101623791	0.948813	Nkx2-4	ENSMUST00000039152.14|Dhx8|ENSMUSG00000034931.16|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm39_v1_chr2_-_27397668_27397676	0.944078	Nkx2-4	ENSMUST00000154316.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr18_-_3281752_3281778	0.942028	Nkx2-4	ENSMUST00000140332.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator	ENSMUST00000147138.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr15_+_99568208_99568278	0.939973	Nkx2-4	ENSMUST00000023758.9|Asic1|ENSMUSG00000023017.11|acid-sensing (proton-gated) ion channel 1
mm39_v1_chr6_+_96090127_96090153	0.890094	Nkx2-4	ENSMUST00000122120.8|Tafa1|ENSMUSG00000059187.13|TAFA chemokine like family member 1
mm39_v1_chr15_+_21111428_21111538	0.889896	Nkx2-4	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr12_-_81468705_81468720	0.884445	Nkx2-4	ENSMUST00000085319.4|Adam4|ENSMUSG00000072972.4|a disintegrin and metallopeptidase domain 4
mm39_v1_chrY_+_17400761_17400761	0.877517	Nkx2-4	ENSMUST00000179408.3|Rbm31y|ENSMUSG00000095365.4|RNA binding motif 31, Y-linked
mm39_v1_chr2_+_131792774_131792787	0.869119	Nkx2-4	ENSMUST00000110170.8|Prnd|ENSMUSG00000027338.17|prion like protein doppel	ENSMUST00000110172.9|Prnd|ENSMUSG00000027338.17|prion like protein doppel	ENSMUST00000110171.9|Prnd|ENSMUSG00000027338.17|prion like protein doppel
mm39_v1_chr14_-_32110312_32110353	0.867478	Nkx2-4	ENSMUST00000100723.4|1700024G13Rik|ENSMUSG00000072473.5|RIKEN cDNA 1700024G13 gene
mm39_v1_chr1_+_85177316_85177429	0.857187	Nkx2-4	ENSMUST00000161424.5|Gm7609|ENSMUSG00000079457.12|predicted pseudogene 7609	ENSMUST00000113402.4|Gm7609|ENSMUSG00000079457.12|predicted pseudogene 7609
mm39_v1_chr19_-_39875192_39875243	0.850269	Nkx2-4	ENSMUST00000168838.3|Cyp2c69|ENSMUSG00000092008.3|cytochrome P450, family 2, subfamily c, polypeptide 69
mm39_v1_chr6_+_41331039_41331119	0.845125	Nkx2-4	ENSMUST00000072103.7|Try10|ENSMUSG00000071521.5|trypsin 10
mm39_v1_chr4_-_136620376_136620408	0.825308	Nkx2-4	ENSMUST00000046332.6|C1qc|ENSMUSG00000036896.6|complement component 1, q subcomponent, C chain
mm39_v1_chr8_+_46080840_46080866	0.783585	Nkx2-4	ENSMUST00000135336.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr14_+_53061814_53061814	0.765382	Nkx2-4	ENSMUST00000103648.4|Trav11d|ENSMUSG00000095088.4|T cell receptor alpha variable 11D
mm39_v1_chr11_+_87483723_87483832	0.74433	Nkx2-4	ENSMUST00000119628.8|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4
mm39_v1_chr12_+_105996961_105996984	0.722083	Nkx2-4	ENSMUST00000220629.2|Vrk1|ENSMUSG00000021115.16|vaccinia related kinase 1
mm39_v1_chr3_+_76500857_76500857	0.712191	Nkx2-4	ENSMUST00000162471.2|Fstl5|ENSMUSG00000034098.15|follistatin-like 5
mm39_v1_chr5_+_24890810_24890822	0.707262	Nkx2-4	ENSMUST00000068825.8|Nub1|ENSMUSG00000028954.12|negative regulator of ubiquitin-like proteins 1
mm39_v1_chr14_+_73376192_73376240	0.683209	Nkx2-4	ENSMUST00000171070.8|Rcbtb2|ENSMUSG00000022106.15|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm39_v1_chr10_+_128067934_128067963	0.673892	Nkx2-4	ENSMUST00000055539.11|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1	ENSMUST00000105244.8|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1	ENSMUST00000105243.9|Timeless|ENSMUSG00000039994.16|timeless circadian clock 1
mm39_v1_chr11_-_101490011_101490082	0.672095	Nkx2-4	ENSMUST00000209862.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634	ENSMUST00000154147.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634
mm39_v1_chr18_-_3281089_3281132	0.667356	Nkx2-4	ENSMUST00000139537.2|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator	ENSMUST00000124747.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr9_-_39618413_39618413	0.656564	Nkx2-4	ENSMUST00000215192.2|Olfr149|ENSMUSG00000062121.4|olfactory receptor 149
mm39_v1_chr2_-_85027041_85027051	0.628775	Nkx2-4	ENSMUST00000099930.9|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55	ENSMUST00000111601.2|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55
mm39_v1_chr14_+_53081922_53082011	0.617042	Nkx2-4	ENSMUST00000181360.3|Trav12d-1|ENSMUSG00000095689.6|T cell receptor alpha variable 12D-1	ENSMUST00000183652.2|Trav12d-1|ENSMUSG00000095689.6|T cell receptor alpha variable 12D-1
mm39_v1_chr15_-_98796373_98796430	0.604615	Nkx2-4	ENSMUST00000229775.2|Dhh|ENSMUSG00000023000.6|desert hedgehog	ENSMUST00000023737.6|Dhh|ENSMUSG00000023000.6|desert hedgehog
mm39_v1_chr1_-_63153675_63153826	0.600741	Nkx2-4	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr3_+_88536805_88536878	0.592286	Nkx2-4	ENSMUST00000175745.2|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr6_+_121320339_121320385	0.577939	Nkx2-4	ENSMUST00000168295.2|Slc6a12|ENSMUSG00000030109.16|solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
mm39_v1_chr2_-_63014622_63014681	0.577689	Nkx2-4	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr2_+_153716958_153716965	0.576412	Nkx2-4	ENSMUST00000028983.3|Bpifb2|ENSMUSG00000027481.3|BPI fold containing family B, member 2
mm39_v1_chr11_+_110858882_110858896	0.572134	Nkx2-4	ENSMUST00000125692.2|Kcnj16|ENSMUSG00000051497.16|potassium inwardly-rectifying channel, subfamily J, member 16
mm39_v1_chrX_-_142716085_142716149	0.569934	Nkx2-4	ENSMUST00000087313.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr11_+_101623836_101623869	0.564541	Nkx2-4	ENSMUST00000129741.2|Dhx8|ENSMUSG00000034931.16|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm39_v1_chr6_-_28133128_28133128	0.556568	Nkx2-4	ENSMUST00000132755.2|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr15_-_27788693_27788724	0.516839	Nkx2-4	ENSMUST00000226287.2|Trio|ENSMUSG00000022263.11|triple functional domain (PTPRF interacting)
mm39_v1_chr2_-_35995283_35995446	0.503337	Nkx2-4	ENSMUST00000112960.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112967.12|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112963.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr14_-_8798841_8798896	0.50199	Nkx2-4	ENSMUST00000061045.3|Sntn|ENSMUSG00000044772.3|sentan, cilia apical structure protein
mm39_v1_chr18_+_34675366_34675388	0.49858	Nkx2-4	ENSMUST00000012426.3|Wnt8a|ENSMUSG00000012282.3|wingless-type MMTV integration site family, member 8A
mm39_v1_chr2_-_112089627_112089656	0.496791	Nkx2-4	ENSMUST00000043970.2|Nutm1|ENSMUSG00000041358.2|NUT midline carcinoma, family member 1
mm39_v1_chr1_+_85577766_85577774	0.491306	Nkx2-4	ENSMUST00000066427.11|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100
mm39_v1_chrX_+_36528991_36528991	0.4894	Nkx2-4	ENSMUST00000115194.5|Rhox4a|ENSMUSG00000079639.5|reproductive homeobox 4A
mm39_v1_chr4_+_62443606_62443606	0.470806	Nkx2-4	ENSMUST00000062145.2|4933430I17Rik|ENSMUSG00000058046.2|RIKEN cDNA 4933430I17 gene
mm39_v1_chr5_-_120887864_120887945	0.468684	Nkx2-4	ENSMUST00000053909.13|Oas2|ENSMUSG00000032690.17|2'-5' oligoadenylate synthetase 2	ENSMUST00000081491.13|Oas2|ENSMUSG00000032690.17|2'-5' oligoadenylate synthetase 2
mm39_v1_chr18_-_3281727_3281747	0.46629	Nkx2-4	ENSMUST00000154705.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator	ENSMUST00000151084.8|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr19_-_39801188_39801258	0.459762	Nkx2-4	ENSMUST00000162507.2|Cyp2c40|ENSMUSG00000025004.17|cytochrome P450, family 2, subfamily c, polypeptide 40	ENSMUST00000160476.9|Cyp2c40|ENSMUSG00000025004.17|cytochrome P450, family 2, subfamily c, polypeptide 40	ENSMUST00000239028.2|Cyp2c40|ENSMUSG00000025004.17|cytochrome P450, family 2, subfamily c, polypeptide 40
mm39_v1_chrX_+_36572501_36572501	0.458907	Nkx2-4	ENSMUST00000179915.4|Rhox4a2|ENSMUSG00000094945.4|reproductive homeobox 4A2
mm39_v1_chr9_+_108437485_108437650	0.450509	Nkx2-4	ENSMUST00000081111.14|Impdh2|ENSMUSG00000062867.14|inosine monophosphate dehydrogenase 2	ENSMUST00000193421.2|Impdh2|ENSMUSG00000062867.14|inosine monophosphate dehydrogenase 2
mm39_v1_chr7_-_34512101_34512119	0.449743	Nkx2-4	ENSMUST00000078686.8|Chst8|ENSMUSG00000060402.9|carbohydrate sulfotransferase 8	ENSMUST00000205259.2|Chst8|ENSMUSG00000060402.9|carbohydrate sulfotransferase 8	ENSMUST00000154629.3|Chst8|ENSMUSG00000060402.9|carbohydrate sulfotransferase 8
mm39_v1_chr9_-_57347366_57347417	0.446687	Nkx2-4	ENSMUST00000214144.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000085709.6|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000214624.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000215883.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000214339.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000215299.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000214166.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase	ENSMUST00000214065.2|Ppcdc|ENSMUSG00000063849.7|phosphopantothenoylcysteine decarboxylase
mm39_v1_chr5_-_137531471_137531575	0.433704	Nkx2-4	ENSMUST00000143495.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2	ENSMUST00000111038.8|Epo|ENSMUSG00000029711.14|erythropoietin	ENSMUST00000111020.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2	ENSMUST00000111023.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr11_+_53611611_53611627	0.432933	Nkx2-4	ENSMUST00000048605.3|Il5|ENSMUSG00000036117.3|interleukin 5
mm39_v1_chr15_+_54274151_54274193	0.432612	Nkx2-4	ENSMUST00000036737.4|Colec10|ENSMUSG00000038591.4|collectin sub-family member 10
mm39_v1_chr10_-_33662700_33662733	0.409995	Nkx2-4	ENSMUST00000223295.2|Sult3a2|ENSMUSG00000090298.3|sulfotransferase family 3A, member 2
mm39_v1_chr6_+_123206880_123206977	0.404944	Nkx2-4	ENSMUST00000205129.2|Clec4n|ENSMUSG00000023349.15|C-type lectin domain family 4, member n
mm39_v1_chr12_-_91712783_91712863	0.397506	Nkx2-4	ENSMUST00000166967.2|Ston2|ENSMUSG00000020961.16|stonin 2
mm39_v1_chr8_+_67312847_67312940	0.390811	Nkx2-4	ENSMUST00000118009.2|Naf1|ENSMUSG00000014907.11|nuclear assembly factor 1 ribonucleoprotein
mm39_v1_chr6_-_91784299_91784398	0.359507	Nkx2-4	ENSMUST00000159684.8|Grip2|ENSMUSG00000030098.16|glutamate receptor interacting protein 2
mm39_v1_chr6_+_123206802_123206822	0.359142	Nkx2-4	ENSMUST00000112554.9|Clec4n|ENSMUSG00000023349.15|C-type lectin domain family 4, member n	ENSMUST00000024118.11|Clec4n|ENSMUSG00000023349.15|C-type lectin domain family 4, member n	ENSMUST00000117130.8|Clec4n|ENSMUSG00000023349.15|C-type lectin domain family 4, member n
mm39_v1_chr2_+_131792931_131792957	0.357376	Nkx2-4	ENSMUST00000110169.2|Prnd|ENSMUSG00000027338.17|prion like protein doppel
mm39_v1_chr14_-_52273600_52273600	0.355745	Nkx2-4	ENSMUST00000214342.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr6_+_43212512_43212512	0.331124	Nkx2-4	ENSMUST00000078057.4|Olfr47|ENSMUSG00000061210.5|olfactory receptor 47
mm39_v1_chr14_-_79461316_79461316	0.324525	Nkx2-4	ENSMUST00000040802.5|Zfp957|ENSMUSG00000071262.11|zinc finger protein 957
mm39_v1_chrX_+_111513971_111513971	0.306689	Nkx2-4	ENSMUST00000071814.13|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chrX_+_147446594_147446600	0.303824	Nkx2-4	ENSMUST00000101186.10|Gm15127|ENSMUSG00000096834.8|predicted gene 15127	ENSMUST00000101190.11|Gm15127|ENSMUSG00000096834.8|predicted gene 15127
mm39_v1_chr7_-_132414823_132414891	0.294999	Nkx2-4	ENSMUST00000106165.8|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr17_+_37253916_37253947	0.279448	Nkx2-4	ENSMUST00000173072.2|Rnf39|ENSMUSG00000036492.13|ring finger protein 39
mm39_v1_chrX_+_55493325_55493325	0.273138	Nkx2-4	ENSMUST00000079663.7|Gm2174|ENSMUSG00000058932.7|predicted gene 2174
mm39_v1_chrX_+_146963720_146963720	0.273111	Nkx2-4	ENSMUST00000112796.2|Gm15107|ENSMUSG00000072930.4|predicted gene 15107
mm39_v1_chr6_+_70332836_70332836	0.263641	Nkx2-4	ENSMUST00000103390.3|Igkv8-18|ENSMUSG00000076589.3|immunoglobulin kappa variable 8-18
mm39_v1_chrX_+_147665572_147665572	0.256362	Nkx2-4	ENSMUST00000163338.2|Luzp4|ENSMUSG00000079387.11|leucine zipper protein 4
mm39_v1_chrX_-_72158969_72158969	0.249903	Nkx2-4	ENSMUST00000114520.2|Xlr5a|ENSMUSG00000058328.14|X-linked lymphocyte-regulated 5A
mm39_v1_chr18_+_36431732_36431732	0.248217	Nkx2-4	ENSMUST00000210490.3|Igip|ENSMUSG00000110185.3|IgA inducing protein
mm39_v1_chrX_+_148567469_148567469	0.242208	Nkx2-4	ENSMUST00000101180.8|Gm15097|ENSMUSG00000094378.8|predicted gene 15097
mm39_v1_chrX_+_148377566_148377566	0.240704	Nkx2-4	ENSMUST00000101181.5|Gm10439|ENSMUSG00000072923.7|predicted gene 10439
mm39_v1_chrX_+_146572724_146572724	0.239362	Nkx2-4	ENSMUST00000178833.2|Gm15128|ENSMUSG00000095872.8|predicted gene 15128
mm39_v1_chr16_-_63684477_63684545	0.236381	Nkx2-4	ENSMUST00000232654.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3	ENSMUST00000064405.8|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chrX_+_72194740_72194740	0.229303	Nkx2-4	ENSMUST00000097221.4|Xlr5b|ENSMUSG00000072479.11|X-linked lymphocyte-regulated 5B
mm39_v1_chrX_+_148230613_148230613	0.227136	Nkx2-4	ENSMUST00000178169.2|Gm15085|ENSMUSG00000095621.2|predicted gene 15085
mm39_v1_chrX_+_147871311_147871311	0.225697	Nkx2-4	ENSMUST00000177606.8|Ott|ENSMUSG00000094885.8|ovary testis transcribed
mm39_v1_chr3_-_110158280_110158333	0.221937	Nkx2-4	ENSMUST00000190378.2|Prmt6|ENSMUSG00000049300.12|protein arginine N-methyltransferase 6	ENSMUST00000106567.2|Prmt6|ENSMUSG00000049300.12|protein arginine N-methyltransferase 6
mm39_v1_chr11_-_83320281_83320281	0.215442	Nkx2-4	ENSMUST00000052521.9|Gas2l2|ENSMUSG00000020686.13|growth arrest-specific 2 like 2
mm39_v1_chr8_+_46944000_46944032	0.197557	Nkx2-4	ENSMUST00000110372.9|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1	ENSMUST00000130563.2|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1
mm39_v1_chr5_-_143211632_143211646	0.1974	Nkx2-4	ENSMUST00000085733.9|Spdye4a|ENSMUSG00000039296.16|speedy/RINGO cell cycle regulator family, member E4A
mm39_v1_chrX_-_72334121_72334121	0.190878	Nkx2-4	ENSMUST00000088450.4|Xlr5c|ENSMUSG00000067764.12|X-linked lymphocyte-regulated 5C
mm39_v1_chr15_+_81350842_81350913	0.181922	Nkx2-4	ENSMUST00000230062.2|Rbx1|ENSMUSG00000022400.10|ring-box 1
mm39_v1_chr1_+_85577709_85577740	0.174641	Nkx2-4	ENSMUST00000155094.8|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100	ENSMUST00000054279.15|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100	ENSMUST00000147552.8|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100	ENSMUST00000153574.8|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100	ENSMUST00000150967.8|Sp100|ENSMUSG00000026222.17|nuclear antigen Sp100
mm39_v1_chr8_-_3798922_3798935	0.172435	Nkx2-4	ENSMUST00000208960.2|Cd209a|ENSMUSG00000031494.8|CD209a antigen	ENSMUST00000207979.2|Cd209a|ENSMUSG00000031494.8|CD209a antigen
mm39_v1_chr14_+_26414422_26414432	0.168723	Nkx2-4	ENSMUST00000022433.12|Dnah12|ENSMUSG00000021879.14|dynein, axonemal, heavy chain 12
mm39_v1_chr3_+_96604415_96604456	0.168315	Nkx2-4	ENSMUST00000107077.4|Pias3|ENSMUSG00000028101.19|protein inhibitor of activated STAT 3
mm39_v1_chr17_-_3746536_3746536	0.166731	Nkx2-4	ENSMUST00000115800.2|Nox3|ENSMUSG00000023802.5|NADPH oxidase 3
mm39_v1_chrX_+_146548987_146548987	0.164308	Nkx2-4	ENSMUST00000112814.8|Gm15128|ENSMUSG00000095872.8|predicted gene 15128
mm39_v1_chrX_+_147880948_147880948	0.162782	Nkx2-4	ENSMUST00000177554.2|Ott|ENSMUSG00000094885.8|ovary testis transcribed
mm39_v1_chr11_+_49213569_49213569	0.160625	Nkx2-4	ENSMUST00000215671.2|Olfr1391|ENSMUSG00000101874.3|olfactory receptor 1391
mm39_v1_chr19_-_45731312_45731373	0.156878	Nkx2-4	ENSMUST00000026241.12|Fgf8|ENSMUSG00000025219.14|fibroblast growth factor 8	ENSMUST00000026240.14|Fgf8|ENSMUSG00000025219.14|fibroblast growth factor 8	ENSMUST00000111928.8|Fgf8|ENSMUSG00000025219.14|fibroblast growth factor 8
mm39_v1_chr9_-_71803354_71803393	0.134671	Nkx2-4	ENSMUST00000184448.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr15_+_68800261_68800271	0.122223	Nkx2-4	ENSMUST00000022954.7|Khdrbs3|ENSMUSG00000022332.9|KH domain containing, RNA binding, signal transduction associated 3
mm39_v1_chr10_-_4338032_4338108	0.109542	Nkx2-4	ENSMUST00000100078.10|Zbtb2|ENSMUSG00000075327.11|zinc finger and BTB domain containing 2
mm39_v1_chr5_-_137531463_137531468	0.108323	Nkx2-4	ENSMUST00000170293.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr3_-_64317478_64317478	0.102659	Nkx2-4	ENSMUST00000170280.3|Vmn2r4|ENSMUSG00000092049.10|vomeronasal 2, receptor 4
mm39_v1_chrX_+_36739065_36739065	0.0998247	Nkx2-4	ENSMUST00000089075.6|Rhox4e|ENSMUSG00000071770.6|reproductive homeobox 4E
mm39_v1_chr6_-_91784405_91784437	0.0906796	Nkx2-4	ENSMUST00000162300.8|Grip2|ENSMUSG00000030098.16|glutamate receptor interacting protein 2
mm39_v1_chr1_-_138547403_138547497	0.0886908	Nkx2-4	ENSMUST00000027642.5|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7	ENSMUST00000186017.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
mm39_v1_chr2_+_88217406_88217406	0.0753341	Nkx2-4	ENSMUST00000214040.3|Olfr1178|ENSMUSG00000056995.4|olfactory receptor 1178
mm39_v1_chr1_+_173986288_173986288	0.0719905	Nkx2-4	ENSMUST00000068403.4|Olfr420|ENSMUSG00000055033.5|olfactory receptor 420
mm39_v1_chr16_-_92622659_92622737	0.0712389	Nkx2-4	ENSMUST00000186296.2|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr12_+_38830812_38830847	0.056862	Nkx2-4	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr12_+_38831093_38831128	0.0509158	Nkx2-4	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr7_-_81216687_81216702	0.0499402	Nkx2-4	ENSMUST00000042318.6|Fsd2|ENSMUSG00000038663.8|fibronectin type III and SPRY domain containing 2
mm39_v1_chr6_+_132739094_132739094	0.0422302	Nkx2-4	ENSMUST00000069268.3|Tas2r102|ENSMUSG00000056901.2|taste receptor, type 2, member 102
mm39_v1_chr12_+_17740831_17740859	0.0338319	Nkx2-4	ENSMUST00000071858.5|Hpcal1|ENSMUSG00000071379.3|hippocalcin-like 1
mm39_v1_chr11_+_98754434_98754472	0.026615	Nkx2-4	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr5_-_137531413_137531460	0.0219003	Nkx2-4	ENSMUST00000168746.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr11_+_49138278_49138342	0.0146541	Nkx2-4	ENSMUST00000109194.2|Mgat1|ENSMUSG00000020346.17|mannoside acetylglucosaminyltransferase 1
mm39_v1_chr12_+_87921198_87921318	0.00667466	Nkx2-4	ENSMUST00000110145.12|Gm2042|ENSMUSG00000096276.10|predicted gene 2042	ENSMUST00000181843.2|Gm2042|ENSMUSG00000096276.10|predicted gene 2042	ENSMUST00000180706.8|Gm2042|ENSMUSG00000096276.10|predicted gene 2042	ENSMUST00000181394.8|Gm2042|ENSMUSG00000096276.10|predicted gene 2042	ENSMUST00000181326.8|Gm2042|ENSMUSG00000096276.10|predicted gene 2042	ENSMUST00000181300.2|Gm2042|ENSMUSG00000096276.10|predicted gene 2042
