mm39_v1_chr2_+_177834868_177834890	6.90977	Pax1_Pax9	ENSMUST00000103065.2|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr6_-_144994534_144994551	6.53787	Pax1_Pax9	ENSMUST00000032402.12|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr5_+_112403678_112403740	5.77577	Pax1_Pax9	ENSMUST00000031286.13|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1	ENSMUST00000131673.8|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1	ENSMUST00000112375.2|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1
mm39_v1_chr6_-_144994327_144994369	5.59168	Pax1_Pax9	ENSMUST00000204138.3|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr15_-_83989801_83989955	5.2627	Pax1_Pax9	ENSMUST00000229826.2|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1	ENSMUST00000082365.6|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1
mm39_v1_chr18_+_69477541_69477601	2.19366	Pax1_Pax9	ENSMUST00000114985.10|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000128706.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201781.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202674.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr9_-_22300409_22300490	1.71772	Pax1_Pax9	ENSMUST00000040912.9|Anln|ENSMUSG00000036777.9|anillin, actin binding protein
mm39_v1_chr2_+_84564394_84564451	1.51438	Pax1_Pax9	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr5_-_129864202_129864237	1.5084	Pax1_Pax9	ENSMUST00000136507.4|Psph|ENSMUSG00000029446.15|phosphoserine phosphatase
mm39_v1_chr9_-_121668527_121668563	1.4329	Pax1_Pax9	ENSMUST00000135986.9|Ccdc13|ENSMUSG00000079235.11|coiled-coil domain containing 13
mm39_v1_chr17_-_24424456_24424536	1.4031	Pax1_Pax9	ENSMUST00000201583.2|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000202925.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000167791.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201960.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000040474.11|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201089.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201301.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201805.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000168410.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000097376.10|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24
mm39_v1_chr9_+_65268304_65268343	1.37651	Pax1_Pax9	ENSMUST00000147185.3|Ubap1l|ENSMUSG00000086228.4|ubiquitin-associated protein 1-like
mm39_v1_chr4_-_117232650_117232663	1.36862	Pax1_Pax9	ENSMUST00000094853.9|Rnf220|ENSMUSG00000028677.20|ring finger protein 220
mm39_v1_chr6_+_47021979_47021995	1.19518	Pax1_Pax9	ENSMUST00000150737.2|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr4_-_143026068_143026134	1.08866	Pax1_Pax9	ENSMUST00000030317.14|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr9_-_96993169_96993214	1.01391	Pax1_Pax9	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr10_+_77814358_77814507	1.002	Pax1_Pax9	ENSMUST00000105397.10|Cfap410|ENSMUSG00000020284.17|cilia and flagella associated protein 410	ENSMUST00000105398.2|Cfap410|ENSMUSG00000020284.17|cilia and flagella associated protein 410
mm39_v1_chr18_-_10706701_10706771	0.873703	Pax1_Pax9	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr5_-_31448370_31448488	0.849449	Pax1_Pax9	ENSMUST00000041565.11|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172	ENSMUST00000201809.2|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172
mm39_v1_chr5_+_129864044_129864123	0.771434	Pax1_Pax9	ENSMUST00000201414.5|Cct6a|ENSMUSG00000029447.14|chaperonin containing Tcp1, subunit 6a (zeta)
mm39_v1_chr2_-_35995283_35995446	0.767186	Pax1_Pax9	ENSMUST00000112960.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112967.12|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112963.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr7_-_23998735_23998793	0.760759	Pax1_Pax9	ENSMUST00000145131.8|Zfp61|ENSMUSG00000050605.18|zinc finger protein 61
mm39_v1_chr4_-_143026033_143026052	0.734032	Pax1_Pax9	ENSMUST00000119654.2|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr14_+_32938774_32938860	0.68222	Pax1_Pax9	ENSMUST00000111956.9|Arhgap22|ENSMUSG00000063506.15|Rho GTPase activating protein 22
mm39_v1_chr8_+_31640332_31640376	0.648053	Pax1_Pax9	ENSMUST00000209851.2|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2	ENSMUST00000098842.3|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2	ENSMUST00000210129.2|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2
mm39_v1_chr17_-_28128180_28128239	0.579299	Pax1_Pax9	ENSMUST00000114848.8|Taf11|ENSMUSG00000024218.14|TATA-box binding protein associated factor 11
mm39_v1_chr13_-_62924903_62924903	0.41728	Pax1_Pax9	ENSMUST00000167516.3|Gm5141|ENSMUSG00000091183.6|predicted gene 5141
mm39_v1_chr16_+_87350202_87350230	0.390374	Pax1_Pax9	ENSMUST00000026700.8|Map3k7cl|ENSMUSG00000025610.8|Map3k7 C-terminal like
mm39_v1_chr8_+_71176713_71176727	0.237199	Pax1_Pax9	ENSMUST00000034307.14|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000239435.2|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000239487.2|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific	ENSMUST00000110095.3|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific
mm39_v1_chr1_+_87683592_87683839	0.190944	Pax1_Pax9	ENSMUST00000144047.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000027512.13|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113186.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113190.3|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)
mm39_v1_chr18_-_78640066_78640157	0.185374	Pax1_Pax9	ENSMUST00000235389.2|Slc14a2|ENSMUSG00000024552.17|solute carrier family 14 (urea transporter), member 2	ENSMUST00000237674.2|Slc14a2|ENSMUSG00000024552.17|solute carrier family 14 (urea transporter), member 2
mm39_v1_chr8_-_95564881_95564986	0.163683	Pax1_Pax9	ENSMUST00000034233.15|Ciapin1|ENSMUSG00000031781.15|cytokine induced apoptosis inhibitor 1	ENSMUST00000162538.9|Ciapin1|ENSMUSG00000031781.15|cytokine induced apoptosis inhibitor 1
mm39_v1_chrX_+_85235370_85235388	0.12161	Pax1_Pax9	ENSMUST00000026036.5|Nr0b1|ENSMUSG00000025056.5|nuclear receptor subfamily 0, group B, member 1
mm39_v1_chr11_+_83644514_83644549	0.0109974	Pax1_Pax9	ENSMUST00000001002.8|Heatr6|ENSMUSG00000000976.14|HEAT repeat containing 6
mm39_v1_chr13_-_62668265_62668265	0.00425403	Pax1_Pax9	ENSMUST00000082203.7|Zfp934|ENSMUSG00000074865.12|zinc finger protein 934
