mm39_v1_chr13_-_25454058_25454077	9.50111	Pax8	ENSMUST00000057866.13|Nrsn1|ENSMUSG00000048978.15|neurensin 1
mm39_v1_chr2_-_25471703_25471770	5.43524	Pax8	ENSMUST00000114217.3|Ajm1|ENSMUSG00000029419.9|apical junction component 1	ENSMUST00000191602.2|Ajm1|ENSMUSG00000029419.9|apical junction component 1
mm39_v1_chr9_-_108474757_108474866	4.81867	Pax8	ENSMUST00000193621.2|P4htm|ENSMUSG00000006675.11|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	ENSMUST00000006853.11|P4htm|ENSMUSG00000006675.11|prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)
mm39_v1_chr10_+_112151245_112151245	4.22463	Pax8	ENSMUST00000218445.2|Kcnc2|ENSMUSG00000035681.8|potassium voltage gated channel, Shaw-related subfamily, member 2
mm39_v1_chr1_+_149975782_149975857	3.20709	Pax8	ENSMUST00000035065.9|Ptgs2|ENSMUSG00000032487.9|prostaglandin-endoperoxide synthase 2
mm39_v1_chr14_+_60615128_60615153	3.14071	Pax8	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr11_+_78389913_78389958	2.97055	Pax8	ENSMUST00000017488.5|Vtn|ENSMUSG00000017344.5|vitronectin
mm39_v1_chr9_+_32027335_32027432	2.63717	Pax8	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr18_-_66993567_66993582	2.58002	Pax8	ENSMUST00000057942.4|Mc4r|ENSMUSG00000047259.4|melanocortin 4 receptor
mm39_v1_chr2_-_73605387_73605456	2.54824	Pax8	ENSMUST00000166199.9|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chrX_-_7439082_7439100	2.53803	Pax8	ENSMUST00000132788.2|Ppp1r3f|ENSMUSG00000039556.17|protein phosphatase 1, regulatory subunit 3F
mm39_v1_chr11_+_24030663_24030706	2.51575	Pax8	ENSMUST00000118955.2|Bcl11a|ENSMUSG00000000861.16|B cell CLL/lymphoma 11A (zinc finger protein)
mm39_v1_chr11_-_69692542_69692683	2.12188	Pax8	ENSMUST00000011285.11|Fgf11|ENSMUSG00000042826.14|fibroblast growth factor 11	ENSMUST00000102585.2|Fgf11|ENSMUSG00000042826.14|fibroblast growth factor 11
mm39_v1_chr18_-_60743169_60743184	2.05478	Pax8	ENSMUST00000115318.4|Synpo|ENSMUSG00000043079.18|synaptopodin
mm39_v1_chr19_+_46064302_46064387	1.96459	Pax8	ENSMUST00000165017.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1	ENSMUST00000223741.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1	ENSMUST00000225780.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1
mm39_v1_chr8_+_61108574_61108596	1.82552	Pax8	ENSMUST00000034066.4|Mfap3l|ENSMUSG00000031647.11|microfibrillar-associated protein 3-like
mm39_v1_chr9_-_103107460_103107478	1.74798	Pax8	ENSMUST00000165296.8|Trf|ENSMUSG00000032554.16|transferrin	ENSMUST00000112645.8|Trf|ENSMUSG00000032554.16|transferrin
mm39_v1_chr11_+_100900278_100900365	1.73425	Pax8	ENSMUST00000103110.10|Atp6v0a1|ENSMUSG00000019302.17|ATPase, H+ transporting, lysosomal V0 subunit A1	ENSMUST00000044721.13|Atp6v0a1|ENSMUSG00000019302.17|ATPase, H+ transporting, lysosomal V0 subunit A1	ENSMUST00000168757.9|Atp6v0a1|ENSMUSG00000019302.17|ATPase, H+ transporting, lysosomal V0 subunit A1
mm39_v1_chr18_+_69654900_69654941	1.64362	Pax8	ENSMUST00000202057.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr9_-_103107495_103107643	1.61279	Pax8	ENSMUST00000035158.16|Trf|ENSMUSG00000032554.16|transferrin
mm39_v1_chr15_+_99600475_99600537	1.60061	Pax8	ENSMUST00000228984.2|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	ENSMUST00000229845.2|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr17_+_21910767_21910767	1.58298	Pax8	ENSMUST00000072133.5|Gm10226|ENSMUSG00000067929.4|predicted gene 10226
mm39_v1_chr1_+_6557455_6557563	1.50175	Pax8	ENSMUST00000140079.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131494.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr7_+_114367971_114368033	1.49151	Pax8	ENSMUST00000117543.3|Insc|ENSMUSG00000048782.16|INSC spindle orientation adaptor protein	ENSMUST00000151464.2|Insc|ENSMUSG00000048782.16|INSC spindle orientation adaptor protein
mm39_v1_chr4_+_6191084_6191122	1.44858	Pax8	ENSMUST00000029907.6|Ubxn2b|ENSMUSG00000028243.6|UBX domain protein 2B
mm39_v1_chr18_+_69654992_69655072	1.41573	Pax8	ENSMUST00000201627.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr19_+_46064409_46064430	1.34417	Pax8	ENSMUST00000223728.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1	ENSMUST00000235620.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1
mm39_v1_chr1_+_74582044_74582083	1.21052	Pax8	ENSMUST00000113749.8|Plcd4|ENSMUSG00000026173.16|phospholipase C, delta 4	ENSMUST00000067916.13|Plcd4|ENSMUSG00000026173.16|phospholipase C, delta 4	ENSMUST00000113747.8|Plcd4|ENSMUSG00000026173.16|phospholipase C, delta 4	ENSMUST00000113750.8|Plcd4|ENSMUSG00000026173.16|phospholipase C, delta 4
mm39_v1_chr5_+_107655487_107655487	1.19172	Pax8	ENSMUST00000143074.2|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr19_+_46064437_46064471	1.12543	Pax8	ENSMUST00000223683.2|Nolc1|ENSMUSG00000015176.12|nucleolar and coiled-body phosphoprotein 1
mm39_v1_chr13_-_63712140_63712140	1.08391	Pax8	ENSMUST00000195756.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr7_-_29605504_29605562	1.01971	Pax8	ENSMUST00000053521.15|Zfp27|ENSMUSG00000062040.15|zinc finger protein 27
mm39_v1_chrX_+_81992467_81992521	0.802214	Pax8	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr7_+_12631727_12631812	0.724668	Pax8	ENSMUST00000055528.11|Zscan22|ENSMUSG00000054715.12|zinc finger and SCAN domain containing 22	ENSMUST00000117189.2|Zscan22|ENSMUSG00000054715.12|zinc finger and SCAN domain containing 22	ENSMUST00000120809.2|Zscan22|ENSMUSG00000054715.12|zinc finger and SCAN domain containing 22	ENSMUST00000119989.3|Zscan22|ENSMUSG00000054715.12|zinc finger and SCAN domain containing 22
mm39_v1_chr15_+_54274151_54274193	0.651836	Pax8	ENSMUST00000036737.4|Colec10|ENSMUSG00000038591.4|collectin sub-family member 10
mm39_v1_chr8_-_46577183_46577183	0.641575	Pax8	ENSMUST00000170416.8|Snx25|ENSMUSG00000038291.17|sorting nexin 25
mm39_v1_chr6_-_68784692_68784743	0.484878	Pax8	ENSMUST00000103334.4|Igkv4-90|ENSMUSG00000076533.4|immunoglobulin kappa chain variable 4-90
mm39_v1_chr13_-_62924903_62924903	0.479087	Pax8	ENSMUST00000167516.3|Gm5141|ENSMUSG00000091183.6|predicted gene 5141
mm39_v1_chr1_+_65225886_65225921	0.464271	Pax8	ENSMUST00000097707.5|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr12_+_71095112_71095131	0.441372	Pax8	ENSMUST00000135709.2|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr18_-_12254562_12254592	0.428363	Pax8	ENSMUST00000055447.14|Tmem241|ENSMUSG00000049411.16|transmembrane protein 241	ENSMUST00000209859.2|Tmem241|ENSMUSG00000049411.16|transmembrane protein 241
mm39_v1_chr14_+_53220658_53220658	0.362585	Pax8	ENSMUST00000200548.2|Trav9d-4|ENSMUSG00000090868.3|T cell receptor alpha variable 9D-4
mm39_v1_chr4_+_119397710_119397732	0.360125	Pax8	ENSMUST00000160219.2|Foxj3|ENSMUSG00000032998.17|forkhead box J3
mm39_v1_chr2_+_128809268_128809363	0.346463	Pax8	ENSMUST00000110320.9|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6	ENSMUST00000110319.3|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6
mm39_v1_chr4_-_57301475_57301510	0.346283	Pax8	ENSMUST00000130900.2|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr5_-_137305895_137305990	0.326629	Pax8	ENSMUST00000199243.5|Srrt|ENSMUSG00000037364.13|serrate RNA effector molecule homolog (Arabidopsis)	ENSMUST00000197466.5|Srrt|ENSMUSG00000037364.13|serrate RNA effector molecule homolog (Arabidopsis)	ENSMUST00000040873.12|Srrt|ENSMUSG00000037364.13|serrate RNA effector molecule homolog (Arabidopsis)
mm39_v1_chr4_+_156300325_156300360	0.270645	Pax8	ENSMUST00000105572.3|Perm1|ENSMUSG00000078486.4|PPARGC1 and ESRR induced regulator, muscle 1
mm39_v1_chr6_+_127049865_127049872	0.157064	Pax8	ENSMUST00000000186.9|Fgf23|ENSMUSG00000000182.10|fibroblast growth factor 23
mm39_v1_chr14_+_53100756_53100822	0.146244	Pax8	ENSMUST00000103616.5|Trav15d-1-dv6d-1|ENSMUSG00000096653.5|T cell receptor alpha variable 15D-1-DV6D-1	ENSMUST00000186370.2|Trav15d-1-dv6d-1|ENSMUSG00000096653.5|T cell receptor alpha variable 15D-1-DV6D-1
mm39_v1_chr14_+_50683002_50683002	0.145735	Pax8	ENSMUST00000214792.2|Olfr740|ENSMUSG00000095917.3|olfactory receptor 740
mm39_v1_chr17_+_38106337_38106337	0.1241	Pax8	ENSMUST00000054748.6|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr14_+_50741057_50741083	0.113567	Pax8	ENSMUST00000217437.2|Olfr742|ENSMUSG00000068431.4|olfactory receptor 742	ENSMUST00000213935.2|Olfr742|ENSMUSG00000068431.4|olfactory receptor 742
mm39_v1_chr5_-_151051000_151051009	0.0794046	Pax8	ENSMUST00000202111.4|Stard13|ENSMUSG00000016128.15|StAR-related lipid transfer (START) domain containing 13
mm39_v1_chr11_-_87788066_87788213	0.0591148	Pax8	ENSMUST00000217095.2|Olfr463|ENSMUSG00000093920.3|olfactory receptor 463	ENSMUST00000215150.2|Olfr463|ENSMUSG00000093920.3|olfactory receptor 463
mm39_v1_chr12_-_28632514_28632532	0.0508172	Pax8	ENSMUST00000110917.2|Allc|ENSMUSG00000020636.15|allantoicase	ENSMUST00000020965.14|Allc|ENSMUSG00000020636.15|allantoicase
mm39_v1_chr5_+_117495337_117495421	0.0283942	Pax8	ENSMUST00000031309.16|Wsb2|ENSMUSG00000029364.16|WD repeat and SOCS box-containing 2
