mm39_v1_chr1_-_66984178_66984302	15.1079	Pknox2_Pknox1	ENSMUST00000027151.12|Myl1|ENSMUSG00000061816.16|myosin, light polypeptide 1
mm39_v1_chr1_-_66984521_66984577	13.9349	Pknox2_Pknox1	ENSMUST00000160100.2|Myl1|ENSMUSG00000061816.16|myosin, light polypeptide 1
mm39_v1_chr1_+_135980508_135980533	9.36035	Pknox2_Pknox1	ENSMUST00000112068.10|Cacna1s|ENSMUSG00000026407.18|calcium channel, voltage-dependent, L type, alpha 1S subunit
mm39_v1_chr1_+_135980488_135980499	9.29869	Pknox2_Pknox1	ENSMUST00000160641.8|Cacna1s|ENSMUSG00000026407.18|calcium channel, voltage-dependent, L type, alpha 1S subunit
mm39_v1_chr1_+_135980639_135980696	9.14911	Pknox2_Pknox1	ENSMUST00000112064.8|Cacna1s|ENSMUSG00000026407.18|calcium channel, voltage-dependent, L type, alpha 1S subunit
mm39_v1_chr2_-_76812799_76812897	8.77896	Pknox2_Pknox1	ENSMUST00000011934.13|Ttn|ENSMUSG00000051747.16|titin	ENSMUST00000099981.10|Ttn|ENSMUSG00000051747.16|titin	ENSMUST00000099980.10|Ttn|ENSMUSG00000051747.16|titin	ENSMUST00000111882.9|Ttn|ENSMUSG00000051747.16|titin	ENSMUST00000140091.8|Ttn|ENSMUSG00000051747.16|titin
mm39_v1_chr17_-_48739874_48739958	6.04614	Pknox2_Pknox1	ENSMUST00000046549.5|Apobec2|ENSMUSG00000040694.5|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm39_v1_chr10_-_123032821_123032868	5.84228	Pknox2_Pknox1	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr2_+_152753231_152753286	4.93382	Pknox2_Pknox1	ENSMUST00000028970.8|Mylk2|ENSMUSG00000027470.10|myosin, light polypeptide kinase 2, skeletal muscle
mm39_v1_chr17_-_71158703_71158734	4.29643	Pknox2_Pknox1	ENSMUST00000166395.9|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr9_-_31824758_31824779	3.92204	Pknox2_Pknox1	ENSMUST00000116615.5|Barx2|ENSMUSG00000032033.12|BarH-like homeobox 2
mm39_v1_chr2_-_113588983_113589000	3.50342	Pknox2_Pknox1	ENSMUST00000099575.4|Grem1|ENSMUSG00000074934.4|gremlin 1, DAN family BMP antagonist
mm39_v1_chr17_-_71158184_71158211	3.46731	Pknox2_Pknox1	ENSMUST00000059775.15|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr4_-_128154709_128154750	3.40049	Pknox2_Pknox1	ENSMUST00000053830.5|Hmgb4|ENSMUSG00000048686.5|high-mobility group box 4
mm39_v1_chr4_+_11758147_11758220	3.28596	Pknox2_Pknox1	ENSMUST00000029871.12|Cdh17|ENSMUSG00000028217.12|cadherin 17	ENSMUST00000108303.2|Cdh17|ENSMUSG00000028217.12|cadherin 17
mm39_v1_chr17_+_30845909_30845965	3.17175	Pknox2_Pknox1	ENSMUST00000236140.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8	ENSMUST00000236118.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8	ENSMUST00000235390.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8
mm39_v1_chr16_-_19079594_19079640	3.14765	Pknox2_Pknox1	ENSMUST00000103752.3|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2	ENSMUST00000197518.2|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2
mm39_v1_chr8_-_62355690_62355762	2.91759	Pknox2_Pknox1	ENSMUST00000121785.9|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein	ENSMUST00000034057.14|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein
mm39_v1_chr7_-_48530777_48530794	2.79301	Pknox2_Pknox1	ENSMUST00000058745.15|E2f8|ENSMUSG00000046179.18|E2F transcription factor 8
mm39_v1_chr19_-_9876815_9876915	2.75436	Pknox2_Pknox1	ENSMUST00000237147.2|Incenp|ENSMUSG00000024660.10|inner centromere protein	ENSMUST00000025562.9|Incenp|ENSMUSG00000024660.10|inner centromere protein
mm39_v1_chr11_-_97913420_97913496	2.73763	Pknox2_Pknox1	ENSMUST00000103144.10|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000017552.13|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000092736.11|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000107562.2|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit
mm39_v1_chr17_+_30843328_30843328	2.70635	Pknox2_Pknox1	ENSMUST00000170651.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8
mm39_v1_chr1_-_87029312_87029339	2.70056	Pknox2_Pknox1	ENSMUST00000113270.3|Alpi|ENSMUSG00000079440.3|alkaline phosphatase, intestinal
mm39_v1_chr7_-_48531344_48531367	2.41841	Pknox2_Pknox1	ENSMUST00000119223.2|E2f8|ENSMUSG00000046179.18|E2F transcription factor 8
mm39_v1_chr6_-_71239216_71239265	2.36837	Pknox2_Pknox1	ENSMUST00000129630.3|Smyd1|ENSMUSG00000055027.18|SET and MYND domain containing 1	ENSMUST00000114186.9|Smyd1|ENSMUSG00000055027.18|SET and MYND domain containing 1	ENSMUST00000074301.10|Smyd1|ENSMUSG00000055027.18|SET and MYND domain containing 1
mm39_v1_chr19_-_9876745_9876765	2.35992	Pknox2_Pknox1	ENSMUST00000237725.2|Incenp|ENSMUSG00000024660.10|inner centromere protein
mm39_v1_chr2_-_34803988_34804055	2.30977	Pknox2_Pknox1	ENSMUST00000028232.7|Phf19|ENSMUSG00000026873.10|PHD finger protein 19	ENSMUST00000202907.2|Phf19|ENSMUSG00000026873.10|PHD finger protein 19
mm39_v1_chr7_+_45084257_45084295	2.28227	Pknox2_Pknox1	ENSMUST00000003964.17|Gys1|ENSMUSG00000003865.17|glycogen synthase 1, muscle
mm39_v1_chr9_+_44045859_44045968	2.2359	Pknox2_Pknox1	ENSMUST00000034650.15|Mcam|ENSMUSG00000032135.16|melanoma cell adhesion molecule	ENSMUST00000098852.3|Mcam|ENSMUSG00000032135.16|melanoma cell adhesion molecule	ENSMUST00000216002.2|Mcam|ENSMUSG00000032135.16|melanoma cell adhesion molecule
mm39_v1_chr7_-_131012202_131012250	2.1576	Pknox2_Pknox1	ENSMUST00000207243.2|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000128432.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000121033.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000046306.15|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr3_-_51468236_51468300	2.14672	Pknox2_Pknox1	ENSMUST00000037141.9|Setd7|ENSMUSG00000037111.10|SET domain containing (lysine methyltransferase) 7
mm39_v1_chr4_+_3938881_3938901	1.98537	Pknox2_Pknox1	ENSMUST00000108386.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000121110.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000149544.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7
mm39_v1_chr7_+_45084300_45084314	1.95466	Pknox2_Pknox1	ENSMUST00000211150.2|Gys1|ENSMUSG00000003865.17|glycogen synthase 1, muscle
mm39_v1_chr16_-_10614679_10614750	1.885	Pknox2_Pknox1	ENSMUST00000023144.6|Prm1|ENSMUSG00000022501.7|protamine 1
mm39_v1_chr8_-_116434517_116434533	1.8525	Pknox2_Pknox1	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr1_-_37580084_37580128	1.80233	Pknox2_Pknox1	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr7_-_131012051_131012134	1.79751	Pknox2_Pknox1	ENSMUST00000154602.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000142349.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr2_-_60503998_60504075	1.78364	Pknox2_Pknox1	ENSMUST00000059888.15|Itgb6|ENSMUSG00000026971.16|integrin beta 6	ENSMUST00000154764.2|Itgb6|ENSMUSG00000026971.16|integrin beta 6
mm39_v1_chr5_+_110434172_110434256	1.75358	Pknox2_Pknox1	ENSMUST00000007296.12|Pole|ENSMUSG00000007080.15|polymerase (DNA directed), epsilon	ENSMUST00000112482.2|Pole|ENSMUSG00000007080.15|polymerase (DNA directed), epsilon
mm39_v1_chr5_+_93416091_93416173	1.68435	Pknox2_Pknox1	ENSMUST00000121127.2|Ccng2|ENSMUSG00000029385.15|cyclin G2
mm39_v1_chr14_-_70526726_70526861	1.672	Pknox2_Pknox1	ENSMUST00000228911.2|Ppp3cc|ENSMUSG00000022092.12|protein phosphatase 3, catalytic subunit, gamma isoform
mm39_v1_chr4_+_133207437_133207458	1.64032	Pknox2_Pknox1	ENSMUST00000051676.7|Tent5b|ENSMUSG00000046694.7|terminal nucleotidyltransferase 5B
mm39_v1_chr6_+_40868154_40868176	1.63037	Pknox2_Pknox1	ENSMUST00000103262.3|Trbv1|ENSMUSG00000076461.3|T cell receptor beta, variable 1
mm39_v1_chr11_+_23206001_23206105	1.61502	Pknox2_Pknox1	ENSMUST00000020538.13|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000109551.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102870.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102869.8|Xpo1|ENSMUSG00000020290.15|exportin 1
mm39_v1_chr4_+_3938903_3939043	1.61161	Pknox2_Pknox1	ENSMUST00000121210.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000121651.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000041122.11|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000120732.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000119307.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7	ENSMUST00000123769.8|Chchd7|ENSMUSG00000042198.13|coiled-coil-helix-coiled-coil-helix domain containing 7
mm39_v1_chr10_-_63174801_63174821	1.58601	Pknox2_Pknox1	ENSMUST00000020257.13|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000177694.8|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000105442.3|Sirt1|ENSMUSG00000020063.17|sirtuin 1
mm39_v1_chr9_-_62888156_62888184	1.5725	Pknox2_Pknox1	ENSMUST00000098651.6|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1	ENSMUST00000214830.2|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1
mm39_v1_chr1_+_156193607_156193619	1.513	Pknox2_Pknox1	ENSMUST00000102782.4|Gm2000|ENSMUSG00000078193.3|predicted gene 2000
mm39_v1_chr3_+_51323383_51323465	1.50443	Pknox2_Pknox1	ENSMUST00000029303.13|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr9_+_107805647_107805684	1.41163	Pknox2_Pknox1	ENSMUST00000085073.2|Actl11|ENSMUSG00000066368.2|actin-like 11
mm39_v1_chr6_+_135042649_135042680	1.33308	Pknox2_Pknox1	ENSMUST00000050104.8|Gprc5a|ENSMUSG00000046733.8|G protein-coupled receptor, family C, group 5, member A
mm39_v1_chr16_-_10613991_10614016	1.27741	Pknox2_Pknox1	ENSMUST00000189593.2|Prm2|ENSMUSG00000038015.7|protamine 2
mm39_v1_chr7_-_45084012_45084133	1.23137	Pknox2_Pknox1	ENSMUST00000107771.12|Ruvbl2|ENSMUSG00000003868.15|RuvB-like protein 2	ENSMUST00000211666.2|Ruvbl2|ENSMUSG00000003868.15|RuvB-like protein 2
mm39_v1_chr13_+_109822527_109822690	1.2185	Pknox2_Pknox1	ENSMUST00000074103.12|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr4_-_3938352_3938401	1.20554	Pknox2_Pknox1	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr2_+_129854256_129854270	1.18704	Pknox2_Pknox1	ENSMUST00000110299.3|Tgm3|ENSMUSG00000027401.10|transglutaminase 3, E polypeptide
mm39_v1_chr17_+_34423054_34423084	1.16947	Pknox2_Pknox1	ENSMUST00000138491.2|Tap2|ENSMUSG00000024339.13|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr14_+_55813074_55813117	1.16135	Pknox2_Pknox1	ENSMUST00000022826.7|Fitm1|ENSMUSG00000022215.7|fat storage-inducing transmembrane protein 1
mm39_v1_chr10_-_129738595_129738595	1.14427	Pknox2_Pknox1	ENSMUST00000071557.2|Olfr815|ENSMUSG00000061961.4|olfactory receptor 815
mm39_v1_chr11_+_98828495_98828559	1.13929	Pknox2_Pknox1	ENSMUST00000107475.9|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha	ENSMUST00000068133.10|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr17_+_35844091_35844105	1.12851	Pknox2_Pknox1	ENSMUST00000025273.9|Psors1c2|ENSMUSG00000024409.9|psoriasis susceptibility 1 candidate 2 (human)
mm39_v1_chr2_-_132420047_132420073	1.08777	Pknox2_Pknox1	ENSMUST00000028822.14|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr3_+_51324022_51324035	1.07959	Pknox2_Pknox1	ENSMUST00000192419.6|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr7_-_45083688_45083733	1.07751	Pknox2_Pknox1	ENSMUST00000210439.2|Ruvbl2|ENSMUSG00000003868.15|RuvB-like protein 2
mm39_v1_chr5_-_71705532_71705558	1.07592	Pknox2_Pknox1	ENSMUST00000050129.6|Cox7b2|ENSMUSG00000049387.11|cytochrome c oxidase subunit 7B2
mm39_v1_chr17_+_24099850_24099855	1.05978	Pknox2_Pknox1	ENSMUST00000068580.4|Dcpp1|ENSMUSG00000096445.2|demilune cell and parotid protein 1	ENSMUST00000168272.9|Dcpp2|ENSMUSG00000096278.9|demilune cell and parotid protein 2
mm39_v1_chr1_+_74275683_74275749	1.05524	Pknox2_Pknox1	ENSMUST00000113819.2|Arpc2|ENSMUSG00000006304.15|actin related protein 2/3 complex, subunit 2
mm39_v1_chr12_+_108145802_108145842	1.03786	Pknox2_Pknox1	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr3_+_137570248_137570286	1.02779	Pknox2_Pknox1	ENSMUST00000041045.14|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1
mm39_v1_chr2_-_132420074_132420153	1.02098	Pknox2_Pknox1	ENSMUST00000110136.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000124107.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1	ENSMUST00000060955.12|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr11_-_4544751_4544820	0.998732	Pknox2_Pknox1	ENSMUST00000109943.10|Mtmr3|ENSMUSG00000034354.18|myotubularin related protein 3
mm39_v1_chr8_-_122271024_122271071	0.992448	Pknox2_Pknox1	ENSMUST00000182460.2|1700018B08Rik|ENSMUSG00000031809.11|RIKEN cDNA 1700018B08 gene
mm39_v1_chr3_-_95139472_95139492	0.973862	Pknox2_Pknox1	ENSMUST00000196025.5|Mllt11|ENSMUSG00000053192.10|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	ENSMUST00000198948.5|Mllt11|ENSMUSG00000053192.10|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11
mm39_v1_chr12_-_112893382_112893398	0.968458	Pknox2_Pknox1	ENSMUST00000075827.5|Jag2|ENSMUSG00000002799.7|jagged 2
mm39_v1_chr8_+_88290469_88290497	0.952019	Pknox2_Pknox1	ENSMUST00000093342.6|4933402J07Rik|ENSMUSG00000069971.6|RIKEN cDNA 4933402J07 gene
mm39_v1_chr1_+_106866678_106866693	0.951162	Pknox2_Pknox1	ENSMUST00000112724.3|Serpinb12|ENSMUSG00000059956.15|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
mm39_v1_chr3_+_116388600_116388682	0.925493	Pknox2_Pknox1	ENSMUST00000198386.5|Sass6|ENSMUSG00000027959.15|SAS-6 centriolar assembly protein	ENSMUST00000198311.5|Sass6|ENSMUSG00000027959.15|SAS-6 centriolar assembly protein	ENSMUST00000197335.2|Sass6|ENSMUSG00000027959.15|SAS-6 centriolar assembly protein
mm39_v1_chr17_-_24360516_24360569	0.908821	Pknox2_Pknox1	ENSMUST00000115411.8|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115409.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115407.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000102927.10|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1
mm39_v1_chr7_+_98352298_98352348	0.890743	Pknox2_Pknox1	ENSMUST00000033009.16|Thap12|ENSMUSG00000030753.16|THAP domain containing 12
mm39_v1_chr17_-_29768586_29768645	0.871064	Pknox2_Pknox1	ENSMUST00000234305.2|Gm17657|ENSMUSG00000091614.3|predicted gene, 17657	ENSMUST00000234648.2|Tmem217|ENSMUSG00000079580.10|transmembrane protein 217	ENSMUST00000234979.2|Tmem217|ENSMUSG00000079580.10|transmembrane protein 217
mm39_v1_chr2_-_132420164_132420175	0.868812	Pknox2_Pknox1	ENSMUST00000110142.8|Gpcpd1|ENSMUSG00000027346.16|glycerophosphocholine phosphodiesterase 1
mm39_v1_chr11_-_78277384_78277433	0.860559	Pknox2_Pknox1	ENSMUST00000108294.2|Foxn1|ENSMUSG00000002057.5|forkhead box N1
mm39_v1_chr5_+_124585244_124585262	0.854456	Pknox2_Pknox1	ENSMUST00000198451.2|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr4_-_119075362_119075414	0.832792	Pknox2_Pknox1	ENSMUST00000212054.2|Tmem269|ENSMUSG00000028642.8|transmembrane protein 269	ENSMUST00000030394.3|Tmem269|ENSMUSG00000028642.8|transmembrane protein 269
mm39_v1_chr1_+_156386327_156386378	0.831161	Pknox2_Pknox1	ENSMUST00000173929.8|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr5_+_67765216_67765232	0.778624	Pknox2_Pknox1	ENSMUST00000087241.7|Shisa3|ENSMUSG00000050010.9|shisa family member 3
mm39_v1_chr1_+_74275648_74275681	0.772806	Pknox2_Pknox1	ENSMUST00000113820.9|Arpc2|ENSMUSG00000006304.15|actin related protein 2/3 complex, subunit 2	ENSMUST00000006467.14|Arpc2|ENSMUSG00000006304.15|actin related protein 2/3 complex, subunit 2
mm39_v1_chr11_+_3152874_3153021	0.761549	Pknox2_Pknox1	ENSMUST00000179770.8|Eif4enif1|ENSMUSG00000020454.18|eukaryotic translation initiation factor 4E nuclear import factor 1	ENSMUST00000110048.8|Eif4enif1|ENSMUSG00000020454.18|eukaryotic translation initiation factor 4E nuclear import factor 1
mm39_v1_chr10_-_123032881_123032900	0.736747	Pknox2_Pknox1	ENSMUST00000220377.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr11_+_78717398_78717444	0.728955	Pknox2_Pknox1	ENSMUST00000147875.9|Lyrm9|ENSMUSG00000072640.12|LYR motif containing 9	ENSMUST00000141321.2|Lyrm9|ENSMUSG00000072640.12|LYR motif containing 9
mm39_v1_chr11_-_20781009_20781056	0.727726	Pknox2_Pknox1	ENSMUST00000047028.9|Lgalsl|ENSMUSG00000042363.15|lectin, galactoside binding-like
mm39_v1_chr1_+_156386414_156386619	0.662236	Pknox2_Pknox1	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr2_+_153334710_153334710	0.658906	Pknox2_Pknox1	ENSMUST00000109783.2|4930404H24Rik|ENSMUSG00000079001.2|RIKEN cDNA 4930404H24 gene
mm39_v1_chr17_+_48080113_48080163	0.647692	Pknox2_Pknox1	ENSMUST00000160373.8|Tfeb|ENSMUSG00000023990.19|transcription factor EB	ENSMUST00000159641.8|Tfeb|ENSMUSG00000023990.19|transcription factor EB
mm39_v1_chrX_-_152795636_152795636	0.630478	Pknox2_Pknox1	ENSMUST00000178342.8|Samt1|ENSMUSG00000094802.8|spermatogenesis associated multipass transmembrane protein 1
mm39_v1_chr9_+_21336198_21336272	0.625983	Pknox2_Pknox1	ENSMUST00000165766.9|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000173397.8|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000072362.14|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000091087.13|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000115404.11|Dnm2|ENSMUSG00000033335.18|dynamin 2
mm39_v1_chr9_+_21336300_21336540	0.625299	Pknox2_Pknox1	ENSMUST00000172482.8|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000174050.8|Dnm2|ENSMUSG00000033335.18|dynamin 2
mm39_v1_chr12_+_104094253_104094261	0.624387	Pknox2_Pknox1	ENSMUST00000085052.3|Serpina3b|ENSMUSG00000066364.3|serine (or cysteine) peptidase inhibitor, clade A, member 3B
mm39_v1_chr11_-_79971750_79971828	0.602882	Pknox2_Pknox1	ENSMUST00000103233.10|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3	ENSMUST00000061283.15|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3
mm39_v1_chr3_-_27764571_27764616	0.590012	Pknox2_Pknox1	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr3_+_95139598_95139627	0.564316	Pknox2_Pknox1	ENSMUST00000107200.8|Cdc42se1|ENSMUSG00000046722.15|CDC42 small effector 1	ENSMUST00000107199.2|Cdc42se1|ENSMUSG00000046722.15|CDC42 small effector 1
mm39_v1_chr17_-_65920481_65920550	0.543979	Pknox2_Pknox1	ENSMUST00000024897.10|Vapa|ENSMUSG00000024091.10|vesicle-associated membrane protein, associated protein A
mm39_v1_chr5_+_138805835_138805835	0.540798	Pknox2_Pknox1	ENSMUST00000179205.2|Foxl3|ENSMUSG00000094504.4|forkhead box L3
mm39_v1_chr7_+_24920840_24920894	0.504648	Pknox2_Pknox1	ENSMUST00000055604.6|Zfp526|ENSMUSG00000046541.10|zinc finger protein 526
mm39_v1_chr4_+_126915104_126915133	0.503831	Pknox2_Pknox1	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr17_-_35340189_35340405	0.497639	Pknox2_Pknox1	ENSMUST00000025246.13|Csnk2b|ENSMUSG00000024387.14|casein kinase 2, beta polypeptide	ENSMUST00000173114.8|Csnk2b|ENSMUSG00000024387.14|casein kinase 2, beta polypeptide
mm39_v1_chr17_-_66384017_66384086	0.490874	Pknox2_Pknox1	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr17_+_24136429_24136452	0.489294	Pknox2_Pknox1	ENSMUST00000115428.2|Dcpp3|ENSMUSG00000057417.8|demilune cell and parotid protein 3	ENSMUST00000234395.2|Dcpp3|ENSMUSG00000057417.8|demilune cell and parotid protein 3
mm39_v1_chr8_+_56747613_56747627	0.484858	Pknox2_Pknox1	ENSMUST00000034026.10|Hpgd|ENSMUSG00000031613.10|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm39_v1_chr2_+_30306116_30306154	0.435169	Pknox2_Pknox1	ENSMUST00000113601.10|Ptpa|ENSMUSG00000039515.12|protein phosphatase 2 protein activator	ENSMUST00000113603.10|Ptpa|ENSMUSG00000039515.12|protein phosphatase 2 protein activator
mm39_v1_chr1_+_167445815_167445878	0.41949	Pknox2_Pknox1	ENSMUST00000111380.2|Rxrg|ENSMUSG00000015843.11|retinoid X receptor gamma
mm39_v1_chr4_+_128548479_128548531	0.417298	Pknox2_Pknox1	ENSMUST00000030588.13|Phc2|ENSMUSG00000028796.18|polyhomeotic 2	ENSMUST00000136377.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr7_+_13132040_13132057	0.392005	Pknox2_Pknox1	ENSMUST00000005791.14|Cabp5|ENSMUSG00000005649.18|calcium binding protein 5
mm39_v1_chrX_-_37131983_37132014	0.386611	Pknox2_Pknox1	ENSMUST00000089060.5|Btg1c|ENSMUSG00000098348.8|BTG anti-proliferation factor 1C
mm39_v1_chr17_+_57024759_57024819	0.375739	Pknox2_Pknox1	ENSMUST00000002452.8|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233832.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233233.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11
mm39_v1_chr17_+_24117691_24117708	0.364066	Pknox2_Pknox1	ENSMUST00000088598.7|Dcpp2|ENSMUSG00000096278.9|demilune cell and parotid protein 2	ENSMUST00000234110.2|Dcpp2|ENSMUSG00000096278.9|demilune cell and parotid protein 2
mm39_v1_chr10_+_82534841_82534983	0.359016	Pknox2_Pknox1	ENSMUST00000020478.14|Hcfc2|ENSMUSG00000020246.14|host cell factor C2
mm39_v1_chr14_+_55252911_55253032	0.346186	Pknox2_Pknox1	ENSMUST00000022815.10|Ngdn|ENSMUSG00000022204.10|neuroguidin, EIF4E binding protein
mm39_v1_chr11_+_32405367_32405438	0.339368	Pknox2_Pknox1	ENSMUST00000051053.5|Ubtd2|ENSMUSG00000044949.5|ubiquitin domain containing 2
mm39_v1_chr17_-_35340006_35340173	0.339149	Pknox2_Pknox1	ENSMUST00000174306.8|Csnk2b|ENSMUSG00000024387.14|casein kinase 2, beta polypeptide	ENSMUST00000174024.8|Csnk2b|ENSMUSG00000024387.14|casein kinase 2, beta polypeptide
mm39_v1_chr8_-_81741495_81741569	0.316522	Pknox2_Pknox1	ENSMUST00000042724.8|Usp38|ENSMUSG00000038250.10|ubiquitin specific peptidase 38
mm39_v1_chr7_-_141794815_141794877	0.302127	Pknox2_Pknox1	ENSMUST00000211591.2|Gm40460|ENSMUSG00000110324.2|predicted gene, 40460
mm39_v1_chr3_+_27425500_27425500	0.290274	Pknox2_Pknox1	ENSMUST00000057186.2|Ghsr|ENSMUSG00000051136.2|growth hormone secretagogue receptor
mm39_v1_chr2_+_30282414_30282452	0.285688	Pknox2_Pknox1	ENSMUST00000123202.8|Dolpp1|ENSMUSG00000026856.15|dolichyl pyrophosphate phosphatase 1	ENSMUST00000113612.10|Dolpp1|ENSMUSG00000026856.15|dolichyl pyrophosphate phosphatase 1
mm39_v1_chr10_-_117546660_117546671	0.279638	Pknox2_Pknox1	ENSMUST00000020408.16|Mdm2|ENSMUSG00000020184.16|transformed mouse 3T3 cell double minute 2	ENSMUST00000105263.9|Mdm2|ENSMUSG00000020184.16|transformed mouse 3T3 cell double minute 2
mm39_v1_chr2_+_30282266_30282317	0.255506	Pknox2_Pknox1	ENSMUST00000028209.15|Dolpp1|ENSMUSG00000026856.15|dolichyl pyrophosphate phosphatase 1
mm39_v1_chr3_-_67282496_67282496	0.252675	Pknox2_Pknox1	ENSMUST00000166353.2|Gm17402|ENSMUSG00000090408.2|predicted gene, 17402
mm39_v1_chr1_+_85721132_85721262	0.248337	Pknox2_Pknox1	ENSMUST00000113360.8|Cab39|ENSMUSG00000036707.17|calcium binding protein 39	ENSMUST00000126962.3|Cab39|ENSMUSG00000036707.17|calcium binding protein 39
mm39_v1_chr7_+_13132075_13132220	0.234207	Pknox2_Pknox1	ENSMUST00000117400.2|Cabp5|ENSMUSG00000005649.18|calcium binding protein 5
mm39_v1_chr7_-_104246386_104246386	0.22649	Pknox2_Pknox1	ENSMUST00000057385.5|Olfr655|ENSMUSG00000051182.6|olfactory receptor 655
mm39_v1_chr11_+_72686990_72687072	0.215567	Pknox2_Pknox1	ENSMUST00000069395.7|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1	ENSMUST00000172220.8|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chr4_+_133970973_133971089	0.206672	Pknox2_Pknox1	ENSMUST00000135228.8|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene	ENSMUST00000144222.8|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene	ENSMUST00000143448.8|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene	ENSMUST00000125921.8|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene	ENSMUST00000122952.8|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene	ENSMUST00000131447.2|E130218I03Rik|ENSMUSG00000086322.8|RIKEN cDNA E130218I03 gene
mm39_v1_chr19_+_11943265_11943305	0.193232	Pknox2_Pknox1	ENSMUST00000025590.11|Osbp|ENSMUSG00000024687.12|oxysterol binding protein
mm39_v1_chr8_-_91860576_91860651	0.182796	Pknox2_Pknox1	ENSMUST00000120213.9|Aktip|ENSMUSG00000031667.17|AKT interacting protein	ENSMUST00000109609.9|Aktip|ENSMUSG00000031667.17|AKT interacting protein
mm39_v1_chr17_+_29768757_29768773	0.172155	Pknox2_Pknox1	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr18_+_56565188_56565236	0.168492	Pknox2_Pknox1	ENSMUST00000070166.6|Gramd3|ENSMUSG00000001700.11|GRAM domain containing 3
mm39_v1_chr6_+_95094721_95094938	0.16204	Pknox2_Pknox1	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr11_+_72687080_72687093	0.1561	Pknox2_Pknox1	ENSMUST00000207107.2|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chr6_+_116490474_116490518	0.153019	Pknox2_Pknox1	ENSMUST00000218028.2|Olfr212|ENSMUSG00000053251.7|olfactory receptor 212	ENSMUST00000220134.2|Olfr212|ENSMUSG00000053251.7|olfactory receptor 212
mm39_v1_chrX_-_108056995_108057010	0.128414	Pknox2_Pknox1	ENSMUST00000033597.9|Hmgn5|ENSMUSG00000031245.9|high-mobility group nucleosome binding domain 5
mm39_v1_chr1_-_74627264_74627308	0.128268	Pknox2_Pknox1	ENSMUST00000066986.13|Zfp142|ENSMUSG00000026135.18|zinc finger protein 142
mm39_v1_chr18_-_36201664_36201678	0.116088	Pknox2_Pknox1	ENSMUST00000239409.2|Nrg2|ENSMUSG00000060275.15|neuregulin 2
mm39_v1_chr1_+_87052668_87052730	0.108125	Pknox2_Pknox1	ENSMUST00000044878.4|Akp3|ENSMUSG00000036500.5|alkaline phosphatase 3, intestine, not Mn requiring
mm39_v1_chr7_-_141649003_141649043	0.106401	Pknox2_Pknox1	ENSMUST00000039926.10|Dusp8|ENSMUSG00000037887.12|dual specificity phosphatase 8
mm39_v1_chr11_+_83742961_83743068	0.103233	Pknox2_Pknox1	ENSMUST00000146786.8|Hnf1b|ENSMUSG00000020679.12|HNF1 homeobox B
mm39_v1_chr13_+_76532470_76532654	0.10248	Pknox2_Pknox1	ENSMUST00000125209.8|Mctp1|ENSMUSG00000021596.17|multiple C2 domains, transmembrane 1
mm39_v1_chr9_+_113760002_113760055	0.0935045	Pknox2_Pknox1	ENSMUST00000084885.12|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1	ENSMUST00000009885.14|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1
mm39_v1_chr2_-_31031814_31032029	0.0858649	Pknox2_Pknox1	ENSMUST00000073879.12|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000100208.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000100207.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113555.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000075326.11|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113552.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000136181.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113564.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113562.9|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1	ENSMUST00000113560.8|Fnbp1|ENSMUSG00000075415.14|formin binding protein 1
mm39_v1_chr18_+_49965689_49965752	0.0847019	Pknox2_Pknox1	ENSMUST00000180611.8|Dmxl1|ENSMUSG00000037416.14|Dmx-like 1
mm39_v1_chr3_+_96577447_96577447	0.0830087	Pknox2_Pknox1	ENSMUST00000048427.9|Ankrd35|ENSMUSG00000038354.14|ankyrin repeat domain 35
mm39_v1_chr9_+_123195986_123196068	0.070354	Pknox2_Pknox1	ENSMUST00000038863.9|Lars2|ENSMUSG00000035202.9|leucyl-tRNA synthetase, mitochondrial	ENSMUST00000216843.2|Lars2|ENSMUSG00000035202.9|leucyl-tRNA synthetase, mitochondrial
mm39_v1_chr7_-_139941566_139941584	0.0639648	Pknox2_Pknox1	ENSMUST00000215023.2|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000216027.2|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000210932.3|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000211031.3|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60
mm39_v1_chr10_-_81436671_81436734	0.050204	Pknox2_Pknox1	ENSMUST00000151858.8|Tle6|ENSMUSG00000034758.13|transducin-like enhancer of split 6	ENSMUST00000142948.8|Tle6|ENSMUSG00000034758.13|transducin-like enhancer of split 6	ENSMUST00000072020.9|Tle6|ENSMUSG00000034758.13|transducin-like enhancer of split 6
mm39_v1_chr14_-_52704547_52704547	0.04573	Pknox2_Pknox1	ENSMUST00000205811.2|Olfr1508|ENSMUSG00000057564.7|olfactory receptor 1508
mm39_v1_chr3_+_107538638_107538638	0.0432888	Pknox2_Pknox1	ENSMUST00000106703.2|Gm10961|ENSMUSG00000078604.2|predicted gene 10961
mm39_v1_chr8_-_91860655_91860666	0.0306153	Pknox2_Pknox1	ENSMUST00000125257.3|Aktip|ENSMUSG00000031667.17|AKT interacting protein
mm39_v1_chr1_-_180023467_180023511	0.0179591	Pknox2_Pknox1	ENSMUST00000161746.2|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A	ENSMUST00000160879.7|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr7_+_65693350_65693350	0.0140612	Pknox2_Pknox1	ENSMUST00000206065.2|Gm45213|ENSMUSG00000108793.2|predicted gene 45213
mm39_v1_chr1_-_52856662_52856742	0.00954035	Pknox2_Pknox1	ENSMUST00000162576.8|Inpp1|ENSMUSG00000026102.10|inositol polyphosphate-1-phosphatase
mm39_v1_chr13_-_64300964_64301043	0.00787061	Pknox2_Pknox1	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
