mm39_v1_chr9_-_45847344_45847404	21.3581	Smad4	ENSMUST00000034590.4|Tagln|ENSMUSG00000032085.6|transgelin
mm39_v1_chr6_+_146934082_146934095	6.53916	Smad4	ENSMUST00000036194.6|Rep15|ENSMUSG00000040121.6|RAB15 effector protein
mm39_v1_chr16_+_34605282_34605305	6.35784	Smad4	ENSMUST00000023538.9|Mylk|ENSMUSG00000022836.12|myosin, light polypeptide kinase
mm39_v1_chr17_+_34482183_34482230	6.08716	Smad4	ENSMUST00000040828.7|H2-Ab1|ENSMUSG00000073421.7|histocompatibility 2, class II antigen A, beta 1	ENSMUST00000237342.2|H2-Ab1|ENSMUSG00000073421.7|histocompatibility 2, class II antigen A, beta 1	ENSMUST00000237866.2|H2-Ab1|ENSMUSG00000073421.7|histocompatibility 2, class II antigen A, beta 1
mm39_v1_chrX_+_55824797_55824925	5.81399	Smad4	ENSMUST00000114773.10|Fhl1|ENSMUSG00000023092.17|four and a half LIM domains 1
mm39_v1_chr11_+_105866030_105866045	5.51702	Smad4	ENSMUST00000001964.8|Ace|ENSMUSG00000020681.15|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm39_v1_chrX_-_7537580_7537635	5.5123	Smad4	ENSMUST00000033486.6|Plp2|ENSMUSG00000031146.7|proteolipid protein 2
mm39_v1_chr1_-_74130488_74130510	5.39161	Smad4	ENSMUST00000187584.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr7_-_70010341_70010494	5.3736	Smad4	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr6_-_52217821_52217834	5.36718	Smad4	ENSMUST00000121043.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr10_+_18720760_18720771	5.34937	Smad4	ENSMUST00000019998.9|Perp|ENSMUSG00000019851.9|PERP, TP53 apoptosis effector
mm39_v1_chr12_-_103304573_103304668	4.87026	Smad4	ENSMUST00000149431.2|Asb2|ENSMUSG00000021200.15|ankyrin repeat and SOCS box-containing 2
mm39_v1_chr17_+_75485791_75485820	4.78666	Smad4	ENSMUST00000135447.8|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000112516.8|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr6_-_68681962_68681962	4.63674	Smad4	ENSMUST00000103330.2|Igkv10-94|ENSMUSG00000096490.2|immunoglobulin kappa variable 10-94
mm39_v1_chr19_-_40260060_40260142	4.55963	Smad4	ENSMUST00000068439.13|Pdlim1|ENSMUSG00000055044.13|PDZ and LIM domain 1 (elfin)
mm39_v1_chr18_-_52662917_52662989	4.38436	Smad4	ENSMUST00000171470.8|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chr18_-_52662728_52662746	4.37334	Smad4	ENSMUST00000025409.9|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chr7_+_130633776_130633806	4.21309	Smad4	ENSMUST00000084509.7|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000213064.3|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1	ENSMUST00000208311.4|Dmbt1|ENSMUSG00000047517.14|deleted in malignant brain tumors 1
mm39_v1_chr10_+_79986280_79986317	4.21126	Smad4	ENSMUST00000153477.8|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr4_+_138694422_138694439	4.16204	Smad4	ENSMUST00000116094.5|Rnf186|ENSMUSG00000070661.8|ring finger protein 186	ENSMUST00000239443.2|Rnf186|ENSMUSG00000070661.8|ring finger protein 186
mm39_v1_chr2_+_125876566_125876600	4.14882	Smad4	ENSMUST00000064794.14|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr17_+_75485906_75485956	4.14729	Smad4	ENSMUST00000112514.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr2_+_69500444_69500480	4.09153	Smad4	ENSMUST00000100050.4|Klhl41|ENSMUSG00000075307.4|kelch-like 41
mm39_v1_chr19_-_40260286_40260309	4.08634	Smad4	ENSMUST00000182432.2|Pdlim1|ENSMUSG00000055044.13|PDZ and LIM domain 1 (elfin)
mm39_v1_chr19_+_5790918_5790937	4.02693	Smad4	ENSMUST00000081496.6|Ltbp3|ENSMUSG00000024940.12|latent transforming growth factor beta binding protein 3
mm39_v1_chr11_+_67131403_67131432	3.90458	Smad4	ENSMUST00000170942.2|Myh4|ENSMUSG00000057003.13|myosin, heavy polypeptide 4, skeletal muscle
mm39_v1_chr12_-_112766266_112766285	3.83348	Smad4	ENSMUST00000239525.1|Ahnak2|ENSMUSG00000118667.1|AHNAK nucleoprotein 2
mm39_v1_chr5_+_92831468_92831507	3.82536	Smad4	ENSMUST00000168878.8|Shroom3|ENSMUSG00000029381.17|shroom family member 3
mm39_v1_chr14_-_25903524_25903524	3.80904	Smad4	ENSMUST00000052286.16|Plac9a|ENSMUSG00000095304.10|placenta specific 9a
mm39_v1_chr2_+_152578164_152578182	3.7278	Smad4	ENSMUST00000038368.9|Id1|ENSMUSG00000042745.10|inhibitor of DNA binding 1, HLH protein	ENSMUST00000109824.2|Id1|ENSMUSG00000042745.10|inhibitor of DNA binding 1, HLH protein
mm39_v1_chr5_+_64960705_64960731	3.69533	Smad4	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr5_+_31070739_31070750	3.68821	Smad4	ENSMUST00000031055.8|Emilin1|ENSMUSG00000029163.10|elastin microfibril interfacer 1
mm39_v1_chr6_+_113448388_113448436	3.446	Smad4	ENSMUST00000058300.14|Il17rc|ENSMUSG00000030281.17|interleukin 17 receptor C
mm39_v1_chr2_+_125876883_125876903	3.37898	Smad4	ENSMUST00000110442.2|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr19_-_23425757_23425768	3.36595	Smad4	ENSMUST00000036069.8|Mamdc2|ENSMUSG00000033207.8|MAM domain containing 2
mm39_v1_chr15_+_58381886_58381903	3.3499	Smad4	ENSMUST00000161028.2|Fer1l6|ENSMUSG00000037106.9|fer-1-like 6 (C. elegans)
mm39_v1_chr7_+_18817767_18817884	3.34413	Smad4	ENSMUST00000032568.14|Dmpk|ENSMUSG00000030409.17|dystrophia myotonica-protein kinase	ENSMUST00000122999.8|Dmpk|ENSMUSG00000030409.17|dystrophia myotonica-protein kinase	ENSMUST00000108473.10|Dmpk|ENSMUSG00000030409.17|dystrophia myotonica-protein kinase	ENSMUST00000108474.2|Dmpk|ENSMUSG00000030409.17|dystrophia myotonica-protein kinase	ENSMUST00000238982.2|Dmpk|ENSMUSG00000030409.17|dystrophia myotonica-protein kinase
mm39_v1_chr2_-_163592127_163592159	3.25652	Smad4	ENSMUST00000017841.4|Ada|ENSMUSG00000017697.4|adenosine deaminase
mm39_v1_chr6_+_113449237_113449252	3.22842	Smad4	ENSMUST00000204447.3|Il17rc|ENSMUSG00000030281.17|interleukin 17 receptor C
mm39_v1_chr7_+_45063079_45063145	3.19213	Smad4	ENSMUST00000058879.8|Ntf5|ENSMUSG00000074121.4|neurotrophin 5
mm39_v1_chr17_+_34372046_34372213	3.1794	Smad4	ENSMUST00000114232.4|H2-DMb1|ENSMUSG00000079547.5|histocompatibility 2, class II, locus Mb1
mm39_v1_chr4_-_148584906_148584923	3.14771	Smad4	ENSMUST00000030840.4|Angptl7|ENSMUSG00000028989.4|angiopoietin-like 7
mm39_v1_chr19_-_6947112_6947182	3.12997	Smad4	ENSMUST00000025912.10|Plcb3|ENSMUSG00000024960.10|phospholipase C, beta 3
mm39_v1_chr19_-_6947076_6947111	3.07315	Smad4	ENSMUST00000237074.2|Plcb3|ENSMUSG00000024960.10|phospholipase C, beta 3
mm39_v1_chr11_-_101062111_101062186	2.94581	Smad4	ENSMUST00000164474.8|Plekhh3|ENSMUSG00000035172.16|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	ENSMUST00000043397.14|Plekhh3|ENSMUSG00000035172.16|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm39_v1_chr4_+_150171822_150171999	2.93696	Smad4	ENSMUST00000094451.4|Gpr157|ENSMUSG00000047875.7|G protein-coupled receptor 157
mm39_v1_chr2_+_27567246_27567307	2.92606	Smad4	ENSMUST00000166775.8|Rxra|ENSMUSG00000015846.16|retinoid X receptor alpha
mm39_v1_chr1_+_171509565_171509666	2.85137	Smad4	ENSMUST00000015499.14|Cd48|ENSMUSG00000015355.14|CD48 antigen	ENSMUST00000068584.7|Cd48|ENSMUSG00000015355.14|CD48 antigen
mm39_v1_chr4_-_94940425_94940459	2.76719	Smad4	ENSMUST00000107094.2|Jun|ENSMUSG00000052684.5|jun proto-oncogene
mm39_v1_chr11_-_33097400_33097425	2.72791	Smad4	ENSMUST00000020507.8|Fgf18|ENSMUSG00000057967.13|fibroblast growth factor 18
mm39_v1_chr2_-_164231015_164231015	2.72509	Smad4	ENSMUST00000167427.2|Slpi|ENSMUSG00000017002.15|secretory leukocyte peptidase inhibitor
mm39_v1_chr7_+_44865177_44865276	2.69259	Smad4	ENSMUST00000033060.14|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000210447.2|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000211744.2|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000107801.10|Tead2|ENSMUSG00000030796.18|TEA domain family member 2
mm39_v1_chr12_-_114286421_114286480	2.67607	Smad4	ENSMUST00000103483.3|Ighv3-8|ENSMUSG00000076674.3|immunoglobulin heavy variable V3-8
mm39_v1_chr3_+_89344006_89344068	2.66629	Smad4	ENSMUST00000038942.10|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000130858.8|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000146630.8|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1	ENSMUST00000145753.2|Pbxip1|ENSMUSG00000042613.10|pre B cell leukemia transcription factor interacting protein 1
mm39_v1_chr6_-_69800923_69800955	2.66355	Smad4	ENSMUST00000103368.3|Igkv5-43|ENSMUSG00000094433.3|immunoglobulin kappa chain variable 5-43
mm39_v1_chr2_-_155676765_155676781	2.5728	Smad4	ENSMUST00000029143.7|Fam83c|ENSMUSG00000074647.5|family with sequence similarity 83, member C	ENSMUST00000239423.2|Fam83c|ENSMUSG00000074647.5|family with sequence similarity 83, member C
mm39_v1_chr10_+_39488930_39488930	2.4791	Smad4	ENSMUST00000019987.7|Traf3ip2|ENSMUSG00000019842.7|TRAF3 interacting protein 2
mm39_v1_chrX_+_21581135_21581290	2.46574	Smad4	ENSMUST00000033414.8|Slc6a14|ENSMUSG00000031089.8|solute carrier family 6 (neurotransmitter transporter), member 14
mm39_v1_chr4_-_133981387_133981417	2.44365	Smad4	ENSMUST00000060050.6|Grrp1|ENSMUSG00000050105.6|glycine/arginine rich protein 1
mm39_v1_chr15_-_103275190_103275225	2.43877	Smad4	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr13_-_22016364_22016369	2.37908	Smad4	ENSMUST00000102979.2|H4c18|ENSMUSG00000069305.4|H4 clustered histone 18
mm39_v1_chr12_-_36206780_36206824	2.32594	Smad4	ENSMUST00000223382.2|Bzw2|ENSMUSG00000020547.6|basic leucine zipper and W2 domains 2	ENSMUST00000020856.6|Bzw2|ENSMUSG00000020547.6|basic leucine zipper and W2 domains 2
mm39_v1_chr12_-_36206750_36206775	2.2986	Smad4	ENSMUST00000221388.2|Bzw2|ENSMUSG00000020547.6|basic leucine zipper and W2 domains 2
mm39_v1_chr15_+_102885467_102885467	2.29633	Smad4	ENSMUST00000001706.7|Hoxc9|ENSMUSG00000036139.7|homeobox C9
mm39_v1_chr14_-_54651442_54651542	2.24221	Smad4	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr17_-_46342739_46342789	2.23804	Smad4	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr2_+_27567213_27567241	2.20023	Smad4	ENSMUST00000077257.12|Rxra|ENSMUSG00000015846.16|retinoid X receptor alpha
mm39_v1_chr7_+_25386418_25386436	2.18937	Smad4	ENSMUST00000002678.10|Tgfb1|ENSMUSG00000002603.16|transforming growth factor, beta 1
mm39_v1_chr7_+_140796537_140796557	2.15138	Smad4	ENSMUST00000141804.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr6_-_112364974_112364995	2.13592	Smad4	ENSMUST00000238755.2|Ssu2|ENSMUSG00000034387.14|ssu-2 homolog (C. elegans)	ENSMUST00000060847.6|Ssu2|ENSMUSG00000034387.14|ssu-2 homolog (C. elegans)
mm39_v1_chr10_-_37014859_37014933	2.11456	Smad4	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chrX_-_71318353_71318409	2.10919	Smad4	ENSMUST00000064780.4|Gabre|ENSMUSG00000031340.9|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
mm39_v1_chr6_+_68414401_68414437	2.08085	Smad4	ENSMUST00000103324.3|Igkv15-103|ENSMUSG00000076523.3|immunoglobulin kappa chain variable 15-103
mm39_v1_chr4_+_8691303_8691381	2.07059	Smad4	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr5_-_138980690_138980792	2.04293	Smad4	ENSMUST00000046901.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha	ENSMUST00000076095.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha
mm39_v1_chr9_-_58065800_58065844	2.01159	Smad4	ENSMUST00000168864.4|Islr|ENSMUSG00000037206.16|immunoglobulin superfamily containing leucine-rich repeat
mm39_v1_chr17_+_34816826_34816868	2.00876	Smad4	ENSMUST00000015596.10|Ager|ENSMUSG00000015452.15|advanced glycosylation end product-specific receptor	ENSMUST00000174496.9|Ager|ENSMUSG00000015452.15|advanced glycosylation end product-specific receptor	ENSMUST00000173992.8|Ager|ENSMUSG00000015452.15|advanced glycosylation end product-specific receptor
mm39_v1_chr19_+_4282487_4282534	2.00273	Smad4	ENSMUST00000235306.2|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr17_-_71158703_71158734	1.97829	Smad4	ENSMUST00000166395.9|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr5_-_41921834_41921844	1.94977	Smad4	ENSMUST00000060820.8|Nkx3-2|ENSMUSG00000049691.9|NK3 homeobox 2
mm39_v1_chr8_+_96078886_96078957	1.94608	Smad4	ENSMUST00000034243.7|Mmp15|ENSMUSG00000031790.9|matrix metallopeptidase 15
mm39_v1_chr1_-_153061758_153061802	1.93215	Smad4	ENSMUST00000185356.7|Lamc2|ENSMUSG00000026479.14|laminin, gamma 2
mm39_v1_chr7_-_81642034_81642062	1.91691	Smad4	ENSMUST00000026096.10|Bnc1|ENSMUSG00000025105.11|basonuclin 1
mm39_v1_chr15_+_102884874_102884874	1.88322	Smad4	ENSMUST00000173306.2|Hoxc9|ENSMUSG00000036139.7|homeobox C9
mm39_v1_chr9_+_108782664_108782813	1.84182	Smad4	ENSMUST00000026740.6|Col7a1|ENSMUSG00000025650.14|collagen, type VII, alpha 1
mm39_v1_chr12_-_36206626_36206734	1.84118	Smad4	ENSMUST00000220828.2|Bzw2|ENSMUSG00000020547.6|basic leucine zipper and W2 domains 2
mm39_v1_chr15_-_96358612_96358724	1.83745	Smad4	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr1_+_171197660_171197679	1.80903	Smad4	ENSMUST00000111286.9|Nectin4|ENSMUSG00000006411.13|nectin cell adhesion molecule 4
mm39_v1_chr9_+_7344357_7344406	1.80879	Smad4	ENSMUST00000150167.2|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12	ENSMUST00000120655.8|Mmp12|ENSMUSG00000049723.15|matrix metallopeptidase 12
mm39_v1_chr7_+_101043568_101043643	1.80509	Smad4	ENSMUST00000098243.4|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr6_+_38410848_38410901	1.79973	Smad4	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr10_-_118705029_118705091	1.78303	Smad4	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr3_-_135397298_135397309	1.77105	Smad4	ENSMUST00000029812.14|Nfkb1|ENSMUSG00000028163.18|nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
mm39_v1_chr10_+_90918802_90918938	1.75405	Smad4	ENSMUST00000020150.10|Ikbip|ENSMUSG00000019975.13|IKBKB interacting protein	ENSMUST00000020149.6|Ikbip|ENSMUSG00000019975.13|IKBKB interacting protein
mm39_v1_chr7_+_45055077_45055077	1.74617	Smad4	ENSMUST00000107774.3|Kcna7|ENSMUSG00000038201.11|potassium voltage-gated channel, shaker-related subfamily, member 7
mm39_v1_chr19_+_4282040_4282054	1.74301	Smad4	ENSMUST00000237518.2|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr9_+_108782646_108782661	1.73866	Smad4	ENSMUST00000112070.8|Col7a1|ENSMUSG00000025650.14|collagen, type VII, alpha 1
mm39_v1_chr11_-_3881995_3882159	1.7197	Smad4	ENSMUST00000020710.11|Tcn2|ENSMUSG00000020432.13|transcobalamin 2	ENSMUST00000109989.10|Tcn2|ENSMUSG00000020432.13|transcobalamin 2	ENSMUST00000109991.8|Tcn2|ENSMUSG00000020432.13|transcobalamin 2	ENSMUST00000109993.9|Tcn2|ENSMUSG00000020432.13|transcobalamin 2
mm39_v1_chr17_-_25300112_25300175	1.71602	Smad4	ENSMUST00000024984.7|Tmem204|ENSMUSG00000024168.9|transmembrane protein 204
mm39_v1_chr3_+_60436570_60436678	1.70861	Smad4	ENSMUST00000192607.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chrX_+_98179725_98179744	1.70579	Smad4	ENSMUST00000052839.7|Efnb1|ENSMUSG00000031217.9|ephrin B1
mm39_v1_chr2_-_173117936_173117982	1.70022	Smad4	ENSMUST00000139306.2|Pmepa1|ENSMUSG00000038400.16|prostate transmembrane protein, androgen induced 1
mm39_v1_chr6_-_129428746_129428827	1.68697	Smad4	ENSMUST00000204012.2|Clec1a|ENSMUSG00000033082.11|C-type lectin domain family 1, member a	ENSMUST00000037481.10|Clec1a|ENSMUSG00000033082.11|C-type lectin domain family 1, member a
mm39_v1_chr19_-_31641770_31641835	1.68106	Smad4	ENSMUST00000073581.6|Prkg1|ENSMUSG00000052920.17|protein kinase, cGMP-dependent, type I
mm39_v1_chr13_+_21995906_21995922	1.67973	Smad4	ENSMUST00000104941.4|H4c17|ENSMUSG00000069306.6|H4 clustered histone 17
mm39_v1_chr12_-_113928438_113928494	1.66379	Smad4	ENSMUST00000103478.4|Ighv3-1|ENSMUSG00000093838.2|immunoglobulin heavy variable 3-1
mm39_v1_chr9_+_61280501_61280720	1.66378	Smad4	ENSMUST00000162583.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000161993.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000160882.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000160724.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000162973.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159050.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr14_-_55950545_55950567	1.65283	Smad4	ENSMUST00000002389.9|Tgm1|ENSMUSG00000022218.17|transglutaminase 1, K polypeptide	ENSMUST00000226907.2|Tgm1|ENSMUSG00000022218.17|transglutaminase 1, K polypeptide
mm39_v1_chr5_+_88523967_88523967	1.6525	Smad4	ENSMUST00000073363.2|Amtn|ENSMUSG00000029282.4|amelotin
mm39_v1_chr1_+_187730018_187730031	1.63969	Smad4	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr9_+_53678801_53678830	1.62643	Smad4	ENSMUST00000048670.10|Slc35f2|ENSMUSG00000042195.10|solute carrier family 35, member F2
mm39_v1_chr11_-_3881789_3881816	1.62328	Smad4	ENSMUST00000109992.8|Tcn2|ENSMUSG00000020432.13|transcobalamin 2	ENSMUST00000109988.2|Tcn2|ENSMUSG00000020432.13|transcobalamin 2
mm39_v1_chr11_-_69304501_69304501	1.53598	Smad4	ENSMUST00000094077.5|Kdm6b|ENSMUSG00000018476.8|KDM1 lysine (K)-specific demethylase 6B
mm39_v1_chr13_+_23715220_23715265	1.51956	Smad4	ENSMUST00000102972.6|H4c8|ENSMUSG00000060981.8|H4 clustered histone 8
mm39_v1_chr6_+_15720653_15720747	1.51406	Smad4	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr15_+_102012782_102012860	1.4962	Smad4	ENSMUST00000230474.2|Tns2|ENSMUSG00000037003.17|tensin 2
mm39_v1_chr12_-_11200306_11200374	1.45955	Smad4	ENSMUST00000055673.2|Kcns3|ENSMUSG00000043673.12|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm39_v1_chr11_-_3881960_3881982	1.45528	Smad4	ENSMUST00000109990.8|Tcn2|ENSMUSG00000020432.13|transcobalamin 2
mm39_v1_chr17_-_46343291_46343309	1.42372	Smad4	ENSMUST00000071648.12|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A	ENSMUST00000142351.9|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr15_-_98505508_98505519	1.42365	Smad4	ENSMUST00000096224.6|Adcy6|ENSMUSG00000022994.10|adenylate cyclase 6
mm39_v1_chr19_+_4281953_4281982	1.39187	Smad4	ENSMUST00000025773.5|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr19_+_4147391_4147417	1.38932	Smad4	ENSMUST00000174514.2|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2	ENSMUST00000174149.8|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2
mm39_v1_chr1_+_53100796_53100816	1.38438	Smad4	ENSMUST00000027269.7|Mstn|ENSMUSG00000026100.7|myostatin	ENSMUST00000191197.2|Mstn|ENSMUSG00000026100.7|myostatin
mm39_v1_chr9_+_61280764_61280817	1.35102	Smad4	ENSMUST00000160541.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000161207.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159630.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr3_+_63203516_63203615	1.35024	Smad4	ENSMUST00000029400.7|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr14_-_30890544_30890598	1.32467	Smad4	ENSMUST00000036618.14|Stab1|ENSMUSG00000042286.14|stabilin 1
mm39_v1_chrX_-_94070277_94070306	1.29691	Smad4	ENSMUST00000096367.5|Spin4|ENSMUSG00000071722.5|spindlin family, member 4
mm39_v1_chr8_-_41469786_41469806	1.2613	Smad4	ENSMUST00000117735.8|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr4_-_133972890_133972917	1.21833	Smad4	ENSMUST00000030644.8|Zfp593|ENSMUSG00000028840.11|zinc finger protein 593
mm39_v1_chr4_-_148215135_148215164	1.21066	Smad4	ENSMUST00000030862.5|Draxin|ENSMUSG00000029005.5|dorsal inhibitory axon guidance protein
mm39_v1_chr19_+_4015900_4015900	1.20117	Smad4	ENSMUST00000025794.7|Aldh3b3|ENSMUSG00000037263.14|aldehyde dehydrogenase 3 family, member B3
mm39_v1_chr6_-_129428869_129428963	1.19521	Smad4	ENSMUST00000203162.3|Clec1a|ENSMUSG00000033082.11|C-type lectin domain family 1, member a
mm39_v1_chr15_-_98676007_98676031	1.17528	Smad4	ENSMUST00000226655.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000228546.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000023732.12|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B	ENSMUST00000226610.2|Wnt10b|ENSMUSG00000022996.16|wingless-type MMTV integration site family, member 10B
mm39_v1_chr14_+_76652369_76652437	1.15928	Smad4	ENSMUST00000110888.8|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr7_+_19197192_19197256	1.11661	Smad4	ENSMUST00000137613.9|Exoc3l2|ENSMUSG00000011263.17|exocyst complex component 3-like 2
mm39_v1_chr15_+_102011415_102011423	1.11517	Smad4	ENSMUST00000046144.10|Tns2|ENSMUSG00000037003.17|tensin 2
mm39_v1_chr7_-_119494918_119494975	1.09379	Smad4	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr4_-_117035922_117035950	1.08522	Smad4	ENSMUST00000153953.2|Kif2c|ENSMUSG00000028678.14|kinesin family member 2C	ENSMUST00000106436.8|Kif2c|ENSMUSG00000028678.14|kinesin family member 2C
mm39_v1_chr15_+_102011352_102011410	1.08432	Smad4	ENSMUST00000169627.9|Tns2|ENSMUSG00000037003.17|tensin 2
mm39_v1_chr18_-_33597060_33597117	1.08367	Smad4	ENSMUST00000168890.2|Nrep|ENSMUSG00000042834.16|neuronal regeneration related protein
mm39_v1_chr11_+_69737437_69737476	1.07442	Smad4	ENSMUST00000152566.8|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3	ENSMUST00000108633.9|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr1_-_180524587_180524599	1.06731	Smad4	ENSMUST00000027778.8|Mixl1|ENSMUSG00000026497.8|Mix1 homeobox-like 1 (Xenopus laevis)
mm39_v1_chr15_-_103161237_103161256	1.03646	Smad4	ENSMUST00000154510.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr14_+_65187485_65187505	1.03365	Smad4	ENSMUST00000043914.8|Ints9|ENSMUSG00000021975.10|integrator complex subunit 9	ENSMUST00000239450.2|Ints9|ENSMUSG00000021975.10|integrator complex subunit 9
mm39_v1_chr2_+_29759495_29759556	1.03244	Smad4	ENSMUST00000047521.7|Cercam|ENSMUSG00000039787.14|cerebral endothelial cell adhesion molecule	ENSMUST00000134152.2|Cercam|ENSMUSG00000039787.14|cerebral endothelial cell adhesion molecule
mm39_v1_chr10_+_79986988_79987212	1.03014	Smad4	ENSMUST00000146516.8|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000144526.2|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr7_+_44866095_44866119	1.01506	Smad4	ENSMUST00000209437.2|Tead2|ENSMUSG00000030796.18|TEA domain family member 2
mm39_v1_chr1_+_59802543_59802559	1.00376	Smad4	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr5_+_76632178_76632178	0.999194	Smad4	ENSMUST00000172369.2|Gm7271|ENSMUSG00000091204.9|predicted gene 7271
mm39_v1_chr10_-_107321938_107321995	0.989546	Smad4	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr5_-_123822338_123822349	0.986568	Smad4	ENSMUST00000111561.8|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr8_+_79754980_79755066	0.984174	Smad4	ENSMUST00000087927.11|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827	ENSMUST00000098614.9|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827
mm39_v1_chr1_+_187730032_187730082	0.98275	Smad4	ENSMUST00000110938.2|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr9_-_14292453_14292538	0.949002	Smad4	ENSMUST00000167549.2|Endod1|ENSMUSG00000037419.10|endonuclease domain containing 1
mm39_v1_chr18_+_69478790_69478882	0.928018	Smad4	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr11_+_97554192_97554240	0.915545	Smad4	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr3_+_102641822_102641846	0.89507	Smad4	ENSMUST00000029451.12|Tspan2|ENSMUSG00000027858.14|tetraspanin 2
mm39_v1_chr3_+_116761916_116761916	0.856014	Smad4	ENSMUST00000117592.2|4930455H04Rik|ENSMUSG00000080907.2|RIKEN cDNA 4930455H04 gene
mm39_v1_chr1_-_87029312_87029339	0.821093	Smad4	ENSMUST00000113270.3|Alpi|ENSMUSG00000079440.3|alkaline phosphatase, intestinal
mm39_v1_chr3_+_63203235_63203293	0.80331	Smad4	ENSMUST00000194134.6|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr11_-_118233326_118233395	0.795809	Smad4	ENSMUST00000103024.4|Cep295nl|ENSMUSG00000076433.5|CEP295 N-terminal like
mm39_v1_chr5_+_76631887_76631887	0.793599	Smad4	ENSMUST00000191515.8|Gm7271|ENSMUSG00000091204.9|predicted gene 7271
mm39_v1_chr9_+_21336300_21336540	0.79154	Smad4	ENSMUST00000172482.8|Dnm2|ENSMUSG00000033335.18|dynamin 2	ENSMUST00000174050.8|Dnm2|ENSMUSG00000033335.18|dynamin 2
mm39_v1_chr4_-_137309415_137309415	0.780762	Smad4	ENSMUST00000238941.2|Ldlrad2|ENSMUSG00000094035.4|low density lipoprotein receptor class A domain containing 2
mm39_v1_chr14_+_54409257_54409268	0.768869	Smad4	ENSMUST00000197949.2|Traj47|ENSMUSG00000105216.2|T cell receptor alpha joining 47
mm39_v1_chr14_+_32321824_32321915	0.76519	Smad4	ENSMUST00000068938.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000228878.2|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr18_+_67338437_67338497	0.746228	Smad4	ENSMUST00000210564.3|Chmp1b|ENSMUSG00000109901.3|charged multivesicular body protein 1B
mm39_v1_chr10_-_90918515_90918525	0.735543	Smad4	ENSMUST00000159110.8|Apaf1|ENSMUSG00000019979.13|apoptotic peptidase activating factor 1
mm39_v1_chrX_+_158491589_158491638	0.730104	Smad4	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr7_+_140796559_140796613	0.723768	Smad4	ENSMUST00000148975.3|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr11_-_55498559_55498650	0.696038	Smad4	ENSMUST00000108853.8|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit	ENSMUST00000075603.5|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit
mm39_v1_chr13_-_98773862_98773918	0.691843	Smad4	ENSMUST00000050389.5|Tmem174|ENSMUSG00000046082.5|transmembrane protein 174
mm39_v1_chr9_+_61280890_61280954	0.682074	Smad4	ENSMUST00000161689.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr11_-_115310743_115310796	0.679616	Smad4	ENSMUST00000106537.8|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	ENSMUST00000043931.9|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	ENSMUST00000073791.10|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
mm39_v1_chr14_-_54791816_54791827	0.673212	Smad4	ENSMUST00000022784.9|Haus4|ENSMUSG00000022177.10|HAUS augmin-like complex, subunit 4
mm39_v1_chr14_-_58063585_58063637	0.616034	Smad4	ENSMUST00000022536.3|Ska3|ENSMUSG00000021965.4|spindle and kinetochore associated complex subunit 3
mm39_v1_chr7_+_99412714_99412715	0.608036	Smad4	ENSMUST00000220001.2|Olfr521|ENSMUSG00000073997.4|olfactory receptor 521	ENSMUST00000219663.2|Olfr521|ENSMUSG00000073997.4|olfactory receptor 521
mm39_v1_chr13_+_111391544_111391552	0.603728	Smad4	ENSMUST00000054716.4|Actbl2|ENSMUSG00000055194.4|actin, beta-like 2
mm39_v1_chr11_-_52104814_52104814	0.590118	Smad4	ENSMUST00000075844.4|Olfr1371|ENSMUSG00000060170.4|olfactory receptor 1371
mm39_v1_chr4_-_119047146_119047161	0.588654	Smad4	ENSMUST00000124626.9|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein
mm39_v1_chr5_-_124490296_124490364	0.586379	Smad4	ENSMUST00000111472.6|Cdk2ap1|ENSMUSG00000029394.12|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm39_v1_chr1_+_152275575_152275643	0.585567	Smad4	ENSMUST00000044311.9|Colgalt2|ENSMUSG00000032649.15|collagen beta(1-O)galactosyltransferase 2
mm39_v1_chr11_+_69737491_69737502	0.575736	Smad4	ENSMUST00000019605.4|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr7_+_100970435_100970696	0.568644	Smad4	ENSMUST00000210192.2|Stard10|ENSMUSG00000030688.16|START domain containing 10	ENSMUST00000172630.8|Stard10|ENSMUSG00000030688.16|START domain containing 10
mm39_v1_chr5_-_123822351_123822442	0.566088	Smad4	ENSMUST00000111564.8|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1	ENSMUST00000063905.12|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr19_-_10716335_10716366	0.556984	Smad4	ENSMUST00000025571.9|Cd5|ENSMUSG00000024669.9|CD5 antigen	ENSMUST00000238167.2|Cd5|ENSMUSG00000024669.9|CD5 antigen
mm39_v1_chr4_-_119047180_119047200	0.550086	Smad4	ENSMUST00000150864.3|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein	ENSMUST00000141227.9|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein
mm39_v1_chr9_+_40098375_40098375	0.544113	Smad4	ENSMUST00000062229.6|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986
mm39_v1_chr13_-_23735822_23735849	0.515952	Smad4	ENSMUST00000102971.2|H4c6|ENSMUSG00000069274.4|H4 clustered histone 6
mm39_v1_chr1_-_133728779_133728805	0.507717	Smad4	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr18_-_84104507_84104529	0.50607	Smad4	ENSMUST00000060303.10|Tshz1|ENSMUSG00000046982.12|teashirt zinc finger family member 1
mm39_v1_chr3_+_127426783_127426789	0.495096	Smad4	ENSMUST00000029587.9|Neurog2|ENSMUSG00000027967.9|neurogenin 2
mm39_v1_chr12_+_36207113_36207131	0.48869	Smad4	ENSMUST00000041640.5|Ankmy2|ENSMUSG00000036188.5|ankyrin repeat and MYND domain containing 2
mm39_v1_chr17_+_28259749_28259806	0.487502	Smad4	ENSMUST00000233869.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr3_-_96833336_96833383	0.486523	Smad4	ENSMUST00000062944.7|Gja8|ENSMUSG00000049908.7|gap junction protein, alpha 8
mm39_v1_chr9_-_110576192_110576213	0.474504	Smad4	ENSMUST00000199791.2|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr15_+_82230155_82230304	0.469203	Smad4	ENSMUST00000023086.15|Smdt1|ENSMUSG00000022452.17|single-pass membrane protein with aspartate rich tail 1
mm39_v1_chr18_+_69479211_69479270	0.459225	Smad4	ENSMUST00000201235.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr18_-_84104574_84104615	0.458108	Smad4	ENSMUST00000175783.3|Tshz1|ENSMUSG00000046982.12|teashirt zinc finger family member 1
mm39_v1_chr9_-_110576124_110576190	0.456069	Smad4	ENSMUST00000199862.5|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor	ENSMUST00000198865.5|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr18_+_36414122_36414204	0.443943	Smad4	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr2_+_26969384_26969397	0.431078	Smad4	ENSMUST00000091233.7|Adamtsl2|ENSMUSG00000036040.15|ADAMTS-like 2
mm39_v1_chr1_-_64160557_64160650	0.430911	Smad4	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr2_+_31530049_31530049	0.429469	Smad4	ENSMUST00000113470.3|Prdm12|ENSMUSG00000079466.3|PR domain containing 12
mm39_v1_chr7_+_101010447_101010495	0.405561	Smad4	ENSMUST00000137384.8|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr4_-_119047202_119047213	0.396991	Smad4	ENSMUST00000239029.2|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein	ENSMUST00000138395.9|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein	ENSMUST00000156746.3|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein
mm39_v1_chr14_+_55813074_55813117	0.39148	Smad4	ENSMUST00000022826.7|Fitm1|ENSMUSG00000022215.7|fat storage-inducing transmembrane protein 1
mm39_v1_chr6_-_42524521_42524521	0.376436	Smad4	ENSMUST00000217978.2|Olfr455|ENSMUSG00000071494.6|olfactory receptor 455
mm39_v1_chr11_-_5394838_5394874	0.375842	Smad4	ENSMUST00000109867.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3	ENSMUST00000143746.3|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr4_-_119047167_119047178	0.368845	Smad4	ENSMUST00000030396.15|Ermap|ENSMUSG00000028644.18|erythroblast membrane-associated protein
mm39_v1_chr18_+_52958382_52958382	0.361252	Smad4	ENSMUST00000238707.2|Gm50457|ENSMUSG00000118407.2|predicted gene, 50457
mm39_v1_chr11_+_53324126_53324184	0.356604	Smad4	ENSMUST00000018382.7|Gdf9|ENSMUSG00000018238.7|growth differentiation factor 9
mm39_v1_chr11_+_59433554_59433603	0.355349	Smad4	ENSMUST00000149126.2|Nlrp3|ENSMUSG00000032691.15|NLR family, pyrin domain containing 3
mm39_v1_chr4_-_25242858_25242876	0.349453	Smad4	ENSMUST00000029922.14|Fhl5|ENSMUSG00000028259.14|four and a half LIM domains 5	ENSMUST00000108204.2|Fhl5|ENSMUSG00000028259.14|four and a half LIM domains 5
mm39_v1_chr11_-_102209767_102209922	0.327727	Smad4	ENSMUST00000174302.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000178839.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000006754.14|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I
mm39_v1_chr16_+_43067641_43067673	0.305297	Smad4	ENSMUST00000079441.13|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114691.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr9_-_14292269_14292329	0.300202	Smad4	ENSMUST00000214236.2|Endod1|ENSMUSG00000037419.10|endonuclease domain containing 1
mm39_v1_chr11_-_3454766_3454834	0.297505	Smad4	ENSMUST00000044507.12|Inpp5j|ENSMUSG00000034570.13|inositol polyphosphate 5-phosphatase J
mm39_v1_chr11_+_95715295_95715376	0.290551	Smad4	ENSMUST00000150134.2|Phospho1|ENSMUSG00000050860.7|phosphatase, orphan 1	ENSMUST00000054173.4|Phospho1|ENSMUSG00000050860.7|phosphatase, orphan 1
mm39_v1_chr5_+_120569764_120569764	0.270735	Smad4	ENSMUST00000031591.10|Lhx5|ENSMUSG00000029595.10|LIM homeobox protein 5
mm39_v1_chr10_+_36850532_36850575	0.257069	Smad4	ENSMUST00000019911.14|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2	ENSMUST00000105510.2|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2
mm39_v1_chr17_+_46957151_46957198	0.244749	Smad4	ENSMUST00000002844.14|Mrpl2|ENSMUSG00000002767.14|mitochondrial ribosomal protein L2	ENSMUST00000113429.8|Mrpl2|ENSMUSG00000002767.14|mitochondrial ribosomal protein L2	ENSMUST00000113430.2|Mrpl2|ENSMUSG00000002767.14|mitochondrial ribosomal protein L2
mm39_v1_chr5_+_75735576_75735663	0.238408	Smad4	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr7_+_101010672_101010715	0.229783	Smad4	ENSMUST00000138628.8|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr15_-_101471324_101471385	0.217704	Smad4	ENSMUST00000023714.5|Krt90|ENSMUSG00000048699.5|keratin 90
mm39_v1_chr13_-_42001102_42001160	0.213365	Smad4	ENSMUST00000121404.8|Adtrp|ENSMUSG00000058022.15|androgen dependent TFPI regulating protein
mm39_v1_chr14_+_54405047_54405047	0.196545	Smad4	ENSMUST00000103693.2|Traj50|ENSMUSG00000076881.2|T cell receptor alpha joining 50
mm39_v1_chr2_+_120307390_120307457	0.188855	Smad4	ENSMUST00000110716.9|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000028748.14|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000090028.13|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000110719.4|Capn3|ENSMUSG00000079110.13|calpain 3
mm39_v1_chr1_+_153767478_153767488	0.176747	Smad4	ENSMUST00000050660.6|Teddm1a|ENSMUSG00000047053.6|transmembrane epididymal protein 1A
mm39_v1_chr14_+_53015904_53015904	0.162348	Smad4	ENSMUST00000103580.4|Trav8d-1|ENSMUSG00000076770.4|T cell receptor alpha variable 8D-1
mm39_v1_chr14_-_65187287_65187335	0.158358	Smad4	ENSMUST00000067843.10|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176489.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175905.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000022544.14|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175744.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176128.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1
mm39_v1_chr15_-_38300937_38300959	0.152882	Smad4	ENSMUST00000227920.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000074043.7|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000228416.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10
mm39_v1_chr16_+_43056218_43056243	0.152498	Smad4	ENSMUST00000146708.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr9_+_122717536_122717536	0.150362	Smad4	ENSMUST00000063980.8|Zkscan7|ENSMUSG00000063488.7|zinc finger with KRAB and SCAN domains 7
mm39_v1_chr2_+_3115250_3115267	0.138472	Smad4	ENSMUST00000072955.12|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr13_-_42001075_42001099	0.129678	Smad4	ENSMUST00000179758.8|Adtrp|ENSMUSG00000058022.15|androgen dependent TFPI regulating protein
mm39_v1_chr9_-_36678868_36678975	0.12466	Smad4	ENSMUST00000217599.2|Stt3a|ENSMUSG00000032116.19|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	ENSMUST00000120381.9|Stt3a|ENSMUSG00000032116.19|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm39_v1_chr2_+_155782648_155782648	0.122524	Smad4	ENSMUST00000109629.2|Gm15557|ENSMUSG00000078972.2|predicted gene 15557
mm39_v1_chr15_+_78312764_78312836	0.113802	Smad4	ENSMUST00000162517.8|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000166142.10|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000089414.11|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17
mm39_v1_chr6_+_120070307_120070320	0.112668	Smad4	ENSMUST00000112711.9|Ninj2|ENSMUSG00000041377.13|ninjurin 2
mm39_v1_chr7_+_127715453_127715608	0.10094	Smad4	ENSMUST00000134694.2|Gm49368|ENSMUSG00000108596.2|predicted gene, 49368
mm39_v1_chr7_-_119494669_119494766	0.0966599	Smad4	ENSMUST00000098080.9|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chrX_-_7765096_7765152	0.094645	Smad4	ENSMUST00000154552.2|Pqbp1|ENSMUSG00000031157.11|polyglutamine binding protein 1
mm39_v1_chr6_-_129252396_129252402	0.0935923	Smad4	ENSMUST00000032259.6|Cd69|ENSMUSG00000030156.6|CD69 antigen
mm39_v1_chr17_-_37611375_37611375	0.0819834	Smad4	ENSMUST00000058046.6|Olfr101|ENSMUSG00000092077.3|olfactory receptor 101
mm39_v1_chr14_-_20546848_20546969	0.0803531	Smad4	ENSMUST00000022353.5|Mss51|ENSMUSG00000021815.5|MSS51 mitochondrial translational activator
mm39_v1_chr2_+_111158766_111158766	0.0782792	Smad4	ENSMUST00000090326.2|Olfr1281|ENSMUSG00000095156.3|olfactory receptor 1281
mm39_v1_chr1_+_87397980_87398003	0.076685	Smad4	ENSMUST00000027476.6|Snorc|ENSMUSG00000026258.6|secondary ossification center associated regulator of chondrocyte maturation
mm39_v1_chr2_+_163334238_163334238	0.0733362	Smad4	ENSMUST00000109416.3|R3hdml|ENSMUSG00000078949.3|R3H domain containing-like
mm39_v1_chr14_-_65187076_65187122	0.0654687	Smad4	ENSMUST00000176832.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1
mm39_v1_chr13_+_23765546_23765581	0.0647941	Smad4	ENSMUST00000102968.3|H4c4|ENSMUSG00000061482.8|H4 clustered histone 4
mm39_v1_chr14_-_104705420_104705479	0.0582176	Smad4	ENSMUST00000053016.10|Pou4f1|ENSMUSG00000048349.10|POU domain, class 4, transcription factor 1
mm39_v1_chr9_-_20809888_20809927	0.0557612	Smad4	ENSMUST00000004206.10|Eif3g|ENSMUSG00000070319.7|eukaryotic translation initiation factor 3, subunit G
mm39_v1_chr10_-_78448514_78448514	0.0439311	Smad4	ENSMUST00000205085.2|Olfr1357|ENSMUSG00000071185.6|olfactory receptor 1357
mm39_v1_chr12_-_114217671_114217724	0.0432942	Smad4	ENSMUST00000193408.2|Ighv3-4|ENSMUSG00000103939.2|immunoglobulin heavy variable V3-4
mm39_v1_chr3_+_68479578_68479723	0.0408419	Smad4	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr4_+_140428777_140428820	0.0345862	Smad4	ENSMUST00000138808.8|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2	ENSMUST00000038893.6|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2
mm39_v1_chr17_-_46956920_46956962	0.0323556	Smad4	ENSMUST00000233974.2|Klc4|ENSMUSG00000003546.11|kinesin light chain 4
mm39_v1_chr13_-_115226666_115226752	0.0274158	Smad4	ENSMUST00000109226.5|Pelo|ENSMUSG00000042275.10|pelota mRNA surveillance and ribosome rescue factor
mm39_v1_chr7_+_116980173_116980249	0.0267709	Smad4	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr14_-_55762395_55762415	0.023892	Smad4	ENSMUST00000228287.2|Nrl|ENSMUSG00000040632.17|neural retina leucine zipper gene
mm39_v1_chr7_-_26880574_26880587	0.0201205	Smad4	ENSMUST00000071986.13|Mia|ENSMUSG00000089661.10|melanoma inhibitory activity	ENSMUST00000121848.2|Mia|ENSMUSG00000089661.10|melanoma inhibitory activity
mm39_v1_chrX_-_149371067_149371150	0.0121019	Smad4	ENSMUST00000140207.8|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000112719.2|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000112727.10|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000112721.10|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000026303.16|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2
mm39_v1_chr17_+_24571011_24571124	0.00447167	Smad4	ENSMUST00000079594.12|Abca3|ENSMUSG00000024130.17|ATP-binding cassette, sub-family A (ABC1), member 3
