mm39_v1_chr7_-_126831803_126831826	22.7113	Sox2	ENSMUST00000133913.8|Septin1|ENSMUSG00000000486.14|septin 1
mm39_v1_chr3_-_83947416_83947482	17.8119	Sox2	ENSMUST00000192095.6|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like	ENSMUST00000191758.6|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like	ENSMUST00000052342.9|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like
mm39_v1_chr16_+_10884156_10884247	16.0141	Sox2	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr13_+_117356808_117356848	15.1795	Sox2	ENSMUST00000022242.9|Emb|ENSMUSG00000021728.9|embigin
mm39_v1_chr1_+_136059101_136059142	15.1635	Sox2	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr10_-_37014859_37014933	14.2134	Sox2	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr11_-_106050927_106050994	13.6079	Sox2	ENSMUST00000045923.10|Limd2|ENSMUSG00000040699.14|LIM domain containing 2
mm39_v1_chr12_-_36092475_36092516	12.7054	Sox2	ENSMUST00000020896.17|Tspan13|ENSMUSG00000020577.18|tetraspanin 13
mm39_v1_chr11_-_106050724_106050753	12.6026	Sox2	ENSMUST00000064545.11|Limd2|ENSMUSG00000040699.14|LIM domain containing 2
mm39_v1_chr2_+_158508609_158508660	11.9992	Sox2	ENSMUST00000103116.10|Ppp1r16b|ENSMUSG00000037754.14|protein phosphatase 1, regulatory subunit 16B
mm39_v1_chr12_+_108572015_108572072	11.8121	Sox2	ENSMUST00000109854.9|Evl|ENSMUSG00000021262.16|Ena-vasodilator stimulated phosphoprotein
mm39_v1_chr4_+_129407374_129407437	11.511	Sox2	ENSMUST00000062356.7|Marcksl1|ENSMUSG00000047945.7|MARCKS-like 1
mm39_v1_chr17_+_36176485_36176735	11.2465	Sox2	ENSMUST00000127442.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18	ENSMUST00000144382.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18
mm39_v1_chr14_+_70314727_70314817	11.208	Sox2	ENSMUST00000225200.2|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr7_+_82516491_82516604	11.1741	Sox2	ENSMUST00000082237.7|Mex3b|ENSMUSG00000057706.8|mex3 RNA binding family member B
mm39_v1_chr11_-_106051533_106051686	11.1483	Sox2	ENSMUST00000106875.2|Limd2|ENSMUSG00000040699.14|LIM domain containing 2
mm39_v1_chr8_-_69636825_69636890	11.1395	Sox2	ENSMUST00000185176.8|Lzts1|ENSMUSG00000036306.14|leucine zipper, putative tumor suppressor 1
mm39_v1_chr17_+_34457868_34457938	10.8591	Sox2	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chr6_+_41155309_41155336	10.8497	Sox2	ENSMUST00000103276.3|Trbv19|ENSMUSG00000076475.3|T cell receptor beta, variable 19
mm39_v1_chr11_-_52165682_52165724	10.8265	Sox2	ENSMUST00000238914.2|Tcf7|ENSMUSG00000000782.17|transcription factor 7, T cell specific
mm39_v1_chr10_+_61007733_61007765	10.8043	Sox2	ENSMUST00000122261.8|Tbata|ENSMUSG00000020096.22|thymus, brain and testes associated	ENSMUST00000121297.8|Tbata|ENSMUSG00000020096.22|thymus, brain and testes associated	ENSMUST00000035894.12|Tbata|ENSMUSG00000020096.22|thymus, brain and testes associated
mm39_v1_chr4_-_34730157_34730232	10.7782	Sox2	ENSMUST00000108136.8|Cfap206|ENSMUSG00000028294.16|cilia and flagella associated protein 206	ENSMUST00000137514.3|Cfap206|ENSMUSG00000028294.16|cilia and flagella associated protein 206	ENSMUST00000029971.12|Cfap206|ENSMUSG00000028294.16|cilia and flagella associated protein 206
mm39_v1_chr17_-_79662514_79662525	10.4496	Sox2	ENSMUST00000068958.9|Cdc42ep3|ENSMUSG00000036533.10|CDC42 effector protein (Rho GTPase binding) 3
mm39_v1_chr9_+_123596276_123596306	10.3888	Sox2	ENSMUST00000166236.9|Ccr9|ENSMUSG00000029530.17|chemokine (C-C motif) receptor 9	ENSMUST00000111454.4|Ccr9|ENSMUSG00000029530.17|chemokine (C-C motif) receptor 9	ENSMUST00000168910.2|Ccr9|ENSMUSG00000029530.17|chemokine (C-C motif) receptor 9
mm39_v1_chr1_+_39940189_39940390	10.1857	Sox2	ENSMUST00000191761.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000193682.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195860.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195259.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195636.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000192509.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr17_+_36176948_36176977	10.0568	Sox2	ENSMUST00000122899.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18
mm39_v1_chr4_-_32923505_32923531	10.0103	Sox2	ENSMUST00000084749.8|Ankrd6|ENSMUSG00000040183.14|ankyrin repeat domain 6
mm39_v1_chr19_-_47907705_47907744	9.93557	Sox2	ENSMUST00000095998.7|Itprip|ENSMUSG00000117975.2|inositol 1,4,5-triphosphate receptor interacting protein
mm39_v1_chr2_+_13579092_13579127	9.90188	Sox2	ENSMUST00000193675.2|Vim|ENSMUSG00000026728.10|vimentin
mm39_v1_chr1_+_165616250_165616297	9.87997	Sox2	ENSMUST00000161971.8|Cd247|ENSMUSG00000005763.16|CD247 antigen	ENSMUST00000187313.7|Cd247|ENSMUSG00000005763.16|CD247 antigen	ENSMUST00000178336.8|Cd247|ENSMUSG00000005763.16|CD247 antigen	ENSMUST00000005907.12|Cd247|ENSMUSG00000005763.16|CD247 antigen	ENSMUST00000027849.11|Cd247|ENSMUSG00000005763.16|CD247 antigen
mm39_v1_chr11_+_11636213_11636284	9.65792	Sox2	ENSMUST00000076700.11|Ikzf1|ENSMUSG00000018654.18|IKAROS family zinc finger 1	ENSMUST00000048122.13|Ikzf1|ENSMUSG00000018654.18|IKAROS family zinc finger 1
mm39_v1_chr5_+_142946598_142946746	9.58525	Sox2	ENSMUST00000129306.4|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr11_+_3280771_3280812	9.48923	Sox2	ENSMUST00000136536.8|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1	ENSMUST00000093399.11|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1
mm39_v1_chr7_-_112946481_112946501	9.41599	Sox2	ENSMUST00000117577.8|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10
mm39_v1_chrX_+_133195974_133195974	9.39781	Sox2	ENSMUST00000037687.8|Tmem35a|ENSMUSG00000033578.8|transmembrane protein 35A
mm39_v1_chr5_+_142946098_142946131	9.26663	Sox2	ENSMUST00000031565.15|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1	ENSMUST00000198017.5|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr18_-_6516089_6516108	9.24231	Sox2	ENSMUST00000115870.9|Epc1|ENSMUSG00000024240.14|enhancer of polycomb homolog 1
mm39_v1_chr1_-_79838897_79839020	9.23582	Sox2	ENSMUST00000190724.2|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr4_-_32923389_32923455	9.23464	Sox2	ENSMUST00000035719.11|Ankrd6|ENSMUSG00000040183.14|ankyrin repeat domain 6
mm39_v1_chr1_-_189075903_189076029	8.99062	Sox2	ENSMUST00000192723.2|Kcnk2|ENSMUSG00000037624.16|potassium channel, subfamily K, member 2	ENSMUST00000110920.7|Kcnk2|ENSMUSG00000037624.16|potassium channel, subfamily K, member 2
mm39_v1_chr16_-_45940602_45940617	8.89808	Sox2	ENSMUST00000023336.10|Cd96|ENSMUSG00000022657.10|CD96 antigen
mm39_v1_chr2_-_6889783_6889807	8.87627	Sox2	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr17_-_36220924_36220971	8.64509	Sox2	ENSMUST00000141662.8|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000056034.13|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000077494.13|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000149277.8|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000061052.12|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1
mm39_v1_chr3_+_130904000_130904120	8.56862	Sox2	ENSMUST00000029611.14|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000106341.9|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000066849.13|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1
mm39_v1_chr12_+_117652526_117652587	8.5008	Sox2	ENSMUST00000222185.2|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr6_-_72935382_72935421	8.48492	Sox2	ENSMUST00000144337.2|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chrX_+_158491589_158491638	8.46865	Sox2	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr17_-_56783462_56783483	8.43499	Sox2	ENSMUST00000067538.6|Ptprs|ENSMUSG00000013236.18|protein tyrosine phosphatase, receptor type, S
mm39_v1_chr11_+_46295547_46295562	8.38112	Sox2	ENSMUST00000063166.6|Fam71b|ENSMUSG00000020401.7|family with sequence similarity 71, member B
mm39_v1_chr11_+_78192355_78192432	8.36413	Sox2	ENSMUST00000045026.4|Spag5|ENSMUSG00000002055.10|sperm associated antigen 5
mm39_v1_chr8_+_124138163_124138329	8.33854	Sox2	ENSMUST00000071134.4|Tubb3|ENSMUSG00000062380.5|tubulin, beta 3 class III	ENSMUST00000212743.2|Tubb3|ENSMUSG00000062380.5|tubulin, beta 3 class III
mm39_v1_chr5_+_105563605_105563651	8.31733	Sox2	ENSMUST00000112707.3|Lrrc8b|ENSMUSG00000070639.6|leucine rich repeat containing 8 family, member B
mm39_v1_chrX_+_158623460_158623477	8.17474	Sox2	ENSMUST00000112451.8|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1	ENSMUST00000112453.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr12_-_15866763_15866923	8.13681	Sox2	ENSMUST00000020922.8|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221215.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221518.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2
mm39_v1_chr11_+_83599841_83599926	8.09206	Sox2	ENSMUST00000001009.14|Wfdc18|ENSMUSG00000000983.14|WAP four-disulfide core domain 18
mm39_v1_chr11_-_97913420_97913496	8.0905	Sox2	ENSMUST00000103144.10|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000017552.13|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000092736.11|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000107562.2|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit
mm39_v1_chr5_-_134944366_134944399	8.08545	Sox2	ENSMUST00000008987.5|Cldn13|ENSMUSG00000008843.5|claudin 13
mm39_v1_chr5_+_67125759_67125790	8.06781	Sox2	ENSMUST00000238993.2|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1	ENSMUST00000038188.14|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr19_+_44282113_44282113	8.03944	Sox2	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr6_-_72935171_72935285	7.99191	Sox2	ENSMUST00000114049.2|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chr15_-_79326200_79326267	7.97317	Sox2	ENSMUST00000117786.9|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon	ENSMUST00000120859.9|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon
mm39_v1_chr2_-_6889685_6889782	7.76433	Sox2	ENSMUST00000183091.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000182851.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr10_-_116309764_116309835	7.65875	Sox2	ENSMUST00000068233.11|Kcnmb4|ENSMUSG00000054934.11|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm39_v1_chr1_-_176641607_176641633	7.64634	Sox2	ENSMUST00000195717.6|Cep170|ENSMUSG00000057335.12|centrosomal protein 170	ENSMUST00000192961.6|Cep170|ENSMUSG00000057335.12|centrosomal protein 170
mm39_v1_chr5_+_35106778_35106848	7.63151	Sox2	ENSMUST00000030984.14|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr11_-_46203047_46203185	7.62787	Sox2	ENSMUST00000129474.2|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2	ENSMUST00000093166.11|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2	ENSMUST00000165599.9|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2
mm39_v1_chr9_+_119978773_119978815	7.56247	Sox2	ENSMUST00000068698.15|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000215512.2|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000111627.3|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000093773.8|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein
mm39_v1_chr4_+_107659474_107659637	7.51189	Sox2	ENSMUST00000106733.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238651.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000030356.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238421.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000126573.8|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238569.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000106732.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chr9_-_103357564_103357619	7.43142	Sox2	ENSMUST00000124310.5|Bfsp2|ENSMUSG00000032556.12|beaded filament structural protein 2, phakinin
mm39_v1_chrX_-_165992145_165992168	7.40935	Sox2	ENSMUST00000112176.8|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr5_-_105258142_105258142	7.28543	Sox2	ENSMUST00000031238.13|Gbp9|ENSMUSG00000029298.16|guanylate-binding protein 9
mm39_v1_chrX_-_56438380_56438400	7.2258	Sox2	ENSMUST00000143310.2|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome	ENSMUST00000098470.9|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome	ENSMUST00000114726.8|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome
mm39_v1_chr17_-_56783376_56783456	7.19635	Sox2	ENSMUST00000223859.2|Ptprs|ENSMUSG00000013236.18|protein tyrosine phosphatase, receptor type, S
mm39_v1_chr15_-_78449172_78449230	7.16542	Sox2	ENSMUST00000230952.2|Rac2|ENSMUSG00000033220.8|Rac family small GTPase 2
mm39_v1_chr14_+_26414422_26414432	7.11452	Sox2	ENSMUST00000022433.12|Dnah12|ENSMUSG00000021879.14|dynein, axonemal, heavy chain 12
mm39_v1_chr12_-_55033130_55033314	7.09229	Sox2	ENSMUST00000173433.8|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A	ENSMUST00000173803.2|Gm20403|ENSMUSG00000092233.2|predicted gene 20403
mm39_v1_chr16_-_16939548_16939624	7.06959	Sox2	ENSMUST00000231297.2|2610318N02Rik|ENSMUSG00000049916.13|RIKEN cDNA 2610318N02 gene	ENSMUST00000231558.2|2610318N02Rik|ENSMUSG00000049916.13|RIKEN cDNA 2610318N02 gene
mm39_v1_chr14_+_70314652_70314671	7.05515	Sox2	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr18_+_82572595_82572705	6.9961	Sox2	ENSMUST00000152071.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000142850.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000080658.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000133193.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000123251.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000153478.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000075372.13|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000102812.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000062446.15|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000114674.11|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000132369.3|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr7_-_100164007_100164167	6.98145	Sox2	ENSMUST00000207405.2|Dnajb13|ENSMUSG00000030708.15|DnaJ heat shock protein family (Hsp40) member B13
mm39_v1_chr4_-_63321591_63321613	6.97619	Sox2	ENSMUST00000035724.5|Akna|ENSMUSG00000039158.12|AT-hook transcription factor
mm39_v1_chr6_-_72935468_72935479	6.95657	Sox2	ENSMUST00000114050.8|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chr5_+_36050663_36050817	6.83698	Sox2	ENSMUST00000064571.11|Afap1|ENSMUSG00000029094.13|actin filament associated protein 1
mm39_v1_chr11_+_11635908_11635949	6.81452	Sox2	ENSMUST00000065433.12|Ikzf1|ENSMUSG00000018654.18|IKAROS family zinc finger 1
mm39_v1_chrX_-_58613428_58613454	6.80386	Sox2	ENSMUST00000119833.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13	ENSMUST00000131319.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr11_+_69737491_69737502	6.7827	Sox2	ENSMUST00000019605.4|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr9_+_61280764_61280817	6.76476	Sox2	ENSMUST00000160541.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000161207.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159630.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr10_+_119655294_119655430	6.76399	Sox2	ENSMUST00000105262.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000147454.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000138410.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144825.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000148954.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1	ENSMUST00000144959.8|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr4_-_123507494_123507544	6.75347	Sox2	ENSMUST00000238866.2|Macf1|ENSMUSG00000028649.22|microtubule-actin crosslinking factor 1
mm39_v1_chr5_-_147337162_147337299	6.71103	Sox2	ENSMUST00000049324.13|Flt3|ENSMUSG00000042817.16|FMS-like tyrosine kinase 3
mm39_v1_chr6_+_128352419_128352466	6.68576	Sox2	ENSMUST00000130785.4|Tex52|ENSMUSG00000079304.6|testis expressed 52	ENSMUST00000100926.4|Tex52|ENSMUSG00000079304.6|testis expressed 52	ENSMUST00000204223.2|Gm44596|ENSMUSG00000108011.2|predicted gene 44596
mm39_v1_chr7_+_65759198_65759263	6.67014	Sox2	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr4_-_58499398_58499409	6.58422	Sox2	ENSMUST00000107570.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr15_+_73620213_73620235	6.56845	Sox2	ENSMUST00000053232.8|Ptp4a3|ENSMUSG00000059895.14|protein tyrosine phosphatase 4a3
mm39_v1_chr17_+_73225292_73225311	6.48672	Sox2	ENSMUST00000024857.14|Lbh|ENSMUSG00000024063.14|limb-bud and heart
mm39_v1_chr3_+_88528743_88528862	6.41691	Sox2	ENSMUST00000170653.9|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2	ENSMUST00000177303.8|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr1_+_132119169_132119195	6.37778	Sox2	ENSMUST00000188169.7|Lemd1|ENSMUSG00000079330.10|LEM domain containing 1	ENSMUST00000112357.9|Lemd1|ENSMUSG00000079330.10|LEM domain containing 1	ENSMUST00000188175.2|Gm29695|ENSMUSG00000118219.2|predicted gene, 29695
mm39_v1_chr10_-_130230201_130230201	6.34438	Sox2	ENSMUST00000094502.6|Vmn2r84|ENSMUSG00000070601.6|vomeronasal 2, receptor 84	ENSMUST00000233146.2|Vmn2r84|ENSMUSG00000070601.6|vomeronasal 2, receptor 84
mm39_v1_chr3_+_14598877_14598926	6.34199	Sox2	ENSMUST00000169079.8|Lrrcc1|ENSMUSG00000027550.15|leucine rich repeat and coiled-coil domain containing 1	ENSMUST00000091325.10|Lrrcc1|ENSMUSG00000027550.15|leucine rich repeat and coiled-coil domain containing 1
mm39_v1_chr9_+_61280501_61280720	6.33104	Sox2	ENSMUST00000162583.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000161993.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000160882.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000160724.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000162973.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159050.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr12_+_3415143_3415207	6.31621	Sox2	ENSMUST00000020999.7|Kif3c|ENSMUSG00000020668.11|kinesin family member 3C
mm39_v1_chr11_+_58839716_58839746	6.23741	Sox2	ENSMUST00000078267.5|H2bu2|ENSMUSG00000056895.5|H2B.U histone 2
mm39_v1_chr15_-_8740218_8740248	6.2244	Sox2	ENSMUST00000005493.14|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr11_-_46280298_46280332	6.21804	Sox2	ENSMUST00000109237.9|Itk|ENSMUSG00000020395.14|IL2 inducible T cell kinase
mm39_v1_chr15_-_103159892_103160081	6.21295	Sox2	ENSMUST00000133600.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000134554.2|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000156927.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr1_+_39940043_39940123	6.20457	Sox2	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr3_+_14598848_14598875	6.18714	Sox2	ENSMUST00000108370.9|Lrrcc1|ENSMUSG00000027550.15|leucine rich repeat and coiled-coil domain containing 1
mm39_v1_chr7_+_16678568_16678646	6.17749	Sox2	ENSMUST00000094807.6|Pnmal2|ENSMUSG00000070802.6|PNMA-like 2
mm39_v1_chr2_+_19204076_19204143	6.17124	Sox2	ENSMUST00000114640.9|Armc3|ENSMUSG00000037683.15|armadillo repeat containing 3	ENSMUST00000049255.7|Armc3|ENSMUSG00000037683.15|armadillo repeat containing 3
mm39_v1_chr10_-_94780695_94780724	6.16368	Sox2	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr1_-_13061333_13061401	6.12394	Sox2	ENSMUST00000115403.9|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1	ENSMUST00000136197.8|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1	ENSMUST00000115402.8|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr12_-_55033113_55033128	6.09289	Sox2	ENSMUST00000038926.13|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr11_-_46280336_46280351	6.06578	Sox2	ENSMUST00000020664.13|Itk|ENSMUSG00000020395.14|IL2 inducible T cell kinase
mm39_v1_chr10_+_43455919_43455941	6.05635	Sox2	ENSMUST00000214476.2|Cd24a|ENSMUSG00000047139.10|CD24a antigen
mm39_v1_chr2_-_6726417_6726440	6.05196	Sox2	ENSMUST00000142941.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000150624.9|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000100429.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000182879.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr11_-_69451012_69451039	6.04588	Sox2	ENSMUST00000004036.6|Efnb3|ENSMUSG00000003934.6|ephrin B3
mm39_v1_chr5_+_122781941_122782072	5.99787	Sox2	ENSMUST00000100737.10|P2rx7|ENSMUSG00000029468.18|purinergic receptor P2X, ligand-gated ion channel, 7	ENSMUST00000121489.8|P2rx7|ENSMUSG00000029468.18|purinergic receptor P2X, ligand-gated ion channel, 7	ENSMUST00000031425.15|P2rx7|ENSMUSG00000029468.18|purinergic receptor P2X, ligand-gated ion channel, 7	ENSMUST00000086247.6|P2rx7|ENSMUSG00000029468.18|purinergic receptor P2X, ligand-gated ion channel, 7
mm39_v1_chr9_+_55949141_55949164	5.9854	Sox2	ENSMUST00000114276.3|Rcn2|ENSMUSG00000032320.8|reticulocalbin 2
mm39_v1_chr2_+_4564553_4564621	5.94262	Sox2	ENSMUST00000176828.8|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr1_-_171854818_171854880	5.94022	Sox2	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr15_-_84441977_84442075	5.93293	Sox2	ENSMUST00000069476.5|Rtl6|ENSMUSG00000055745.5|retrotransposon Gag like 6
mm39_v1_chr10_+_4216353_4216380	5.90797	Sox2	ENSMUST00000045730.7|Akap12|ENSMUSG00000038587.11|A kinase (PRKA) anchor protein (gravin) 12
mm39_v1_chr10_+_28544356_28544400	5.84071	Sox2	ENSMUST00000060409.13|Themis|ENSMUSG00000049109.16|thymocyte selection associated	ENSMUST00000056097.11|Themis|ENSMUSG00000049109.16|thymocyte selection associated	ENSMUST00000105516.9|Themis|ENSMUSG00000049109.16|thymocyte selection associated
mm39_v1_chr5_-_140634773_140634807	5.83958	Sox2	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr8_+_112264095_112264210	5.81654	Sox2	ENSMUST00000173726.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1	ENSMUST00000174454.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr15_-_103242697_103242775	5.80344	Sox2	ENSMUST00000229373.2|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr6_-_148846247_148846324	5.79598	Sox2	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr4_+_48585135_48585187	5.78856	Sox2	ENSMUST00000030032.13|Tmeff1|ENSMUSG00000028347.15|transmembrane protein with EGF-like and two follistatin-like domains 1
mm39_v1_chr4_+_108317197_108317227	5.71968	Sox2	ENSMUST00000097925.9|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chrX_-_133062677_133062677	5.70977	Sox2	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr4_+_152270510_152270591	5.69712	Sox2	ENSMUST00000167926.8|Acot7|ENSMUSG00000028937.15|acyl-CoA thioesterase 7
mm39_v1_chr15_+_91722458_91722468	5.69384	Sox2	ENSMUST00000109277.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C
mm39_v1_chrX_-_47123719_47123736	5.69233	Sox2	ENSMUST00000039026.8|Apln|ENSMUSG00000037010.8|apelin
mm39_v1_chr4_+_107659361_107659470	5.67794	Sox2	ENSMUST00000106731.4|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chr15_+_91722524_91722539	5.66528	Sox2	ENSMUST00000109276.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000088555.10|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000100293.9|Smgc|ENSMUSG00000047295.17|submandibular gland protein C	ENSMUST00000239545.1|ENSMUSG00000118670.1|ENSMUSG00000118670.1|mucin 19	ENSMUST00000126508.8|Smgc|ENSMUSG00000047295.17|submandibular gland protein C
mm39_v1_chr2_-_6726701_6726739	5.64775	Sox2	ENSMUST00000114927.9|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr16_+_19916292_19916346	5.64069	Sox2	ENSMUST00000023509.5|Klhl24|ENSMUSG00000062901.4|kelch-like 24	ENSMUST00000232088.2|Klhl24|ENSMUSG00000062901.4|kelch-like 24	ENSMUST00000231842.2|Klhl24|ENSMUSG00000062901.4|kelch-like 24
mm39_v1_chr3_+_109481223_109481306	5.62589	Sox2	ENSMUST00000106576.3|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chrX_+_99773523_99773567	5.61905	Sox2	ENSMUST00000019503.14|Gdpd2|ENSMUSG00000019359.15|glycerophosphodiester phosphodiesterase domain containing 2
mm39_v1_chr4_+_152270636_152270664	5.60934	Sox2	ENSMUST00000030779.10|Acot7|ENSMUSG00000028937.15|acyl-CoA thioesterase 7
mm39_v1_chr1_+_180158035_180158058	5.59413	Sox2	ENSMUST00000070181.7|Itpkb|ENSMUSG00000038855.11|inositol 1,4,5-trisphosphate 3-kinase B
mm39_v1_chr12_-_100995305_100995346	5.58972	Sox2	ENSMUST00000068411.5|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr9_+_53678801_53678830	5.58483	Sox2	ENSMUST00000048670.10|Slc35f2|ENSMUSG00000042195.10|solute carrier family 35, member F2
mm39_v1_chr10_+_41352310_41352390	5.58261	Sox2	ENSMUST00000019967.16|Mical1|ENSMUSG00000019823.18|microtubule associated monooxygenase, calponin and LIM domain containing 1	ENSMUST00000119962.8|Mical1|ENSMUSG00000019823.18|microtubule associated monooxygenase, calponin and LIM domain containing 1	ENSMUST00000099934.11|Mical1|ENSMUSG00000019823.18|microtubule associated monooxygenase, calponin and LIM domain containing 1
mm39_v1_chr2_+_26205525_26205614	5.56407	Sox2	ENSMUST00000066936.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000078616.12|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr3_-_50398027_50398063	5.5491	Sox2	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr16_-_19801781_19801788	5.52349	Sox2	ENSMUST00000058839.10|Klhl6|ENSMUSG00000043008.10|kelch-like 6
mm39_v1_chr2_-_131001916_131002001	5.50266	Sox2	ENSMUST00000103188.10|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene	ENSMUST00000133602.8|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene	ENSMUST00000028800.12|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene
mm39_v1_chr16_-_20245071_20245136	5.4951	Sox2	ENSMUST00000115547.9|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	ENSMUST00000096199.5|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr16_-_16942970_16943010	5.47601	Sox2	ENSMUST00000093336.8|2610318N02Rik|ENSMUSG00000049916.13|RIKEN cDNA 2610318N02 gene	ENSMUST00000231681.2|2610318N02Rik|ENSMUSG00000049916.13|RIKEN cDNA 2610318N02 gene
mm39_v1_chr3_+_154416745_154416758	5.45007	Sox2	ENSMUST00000051862.8|Erich3|ENSMUSG00000078161.9|glutamate rich 3
mm39_v1_chr4_-_34882917_34882964	5.43698	Sox2	ENSMUST00000098163.9|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292	ENSMUST00000047950.6|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292
mm39_v1_chr10_-_62363217_62363241	5.42652	Sox2	ENSMUST00000160987.8|Srgn|ENSMUSG00000020077.15|serglycin
mm39_v1_chr15_-_98851566_98851584	5.38175	Sox2	ENSMUST00000097014.7|Tuba1a|ENSMUSG00000072235.7|tubulin, alpha 1A
mm39_v1_chr9_+_21279802_21279828	5.36942	Sox2	ENSMUST00000214474.2|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3
mm39_v1_chr16_-_20245138_20245149	5.3463	Sox2	ENSMUST00000079158.13|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr11_+_87651359_87651413	5.34596	Sox2	ENSMUST00000039627.12|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1	ENSMUST00000100644.10|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1
mm39_v1_chr10_-_30647836_30647847	5.32727	Sox2	ENSMUST00000215926.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000213836.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr3_+_88522674_88522741	5.32087	Sox2	ENSMUST00000176539.8|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr18_-_43526411_43526447	5.31838	Sox2	ENSMUST00000025379.14|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr11_+_6339442_6339471	5.31603	Sox2	ENSMUST00000109786.8|Zmiz2|ENSMUSG00000041164.16|zinc finger, MIZ-type containing 2
mm39_v1_chr17_-_36220518_36220590	5.30887	Sox2	ENSMUST00000141132.2|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1
mm39_v1_chr6_-_122463422_122463515	5.29525	Sox2	ENSMUST00000068242.9|Rimklb|ENSMUSG00000040649.16|ribosomal modification protein rimK-like family member B
mm39_v1_chr1_-_173703424_173703430	5.29334	Sox2	ENSMUST00000186442.7|Mndal|ENSMUSG00000090272.10|myeloid nuclear differentiation antigen like
mm39_v1_chrX_+_47608122_47608162	5.26563	Sox2	ENSMUST00000033430.3|Rab33a|ENSMUSG00000031104.3|RAB33A, member RAS oncogene family
mm39_v1_chr11_-_46280281_46280295	5.26152	Sox2	ENSMUST00000101306.4|Itk|ENSMUSG00000020395.14|IL2 inducible T cell kinase
mm39_v1_chr7_+_81824544_81824602	5.25279	Sox2	ENSMUST00000032874.14|Sh3gl3|ENSMUSG00000030638.14|SH3-domain GRB2-like 3
mm39_v1_chrX_-_56438322_56438348	5.24396	Sox2	ENSMUST00000114730.8|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome
mm39_v1_chr5_+_34140777_34140873	5.23879	Sox2	ENSMUST00000094869.12|Gm1673|ENSMUSG00000070858.13|predicted gene 1673	ENSMUST00000114383.8|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr5_-_105198913_105198913	5.23825	Sox2	ENSMUST00000112718.5|Gbp8|ENSMUSG00000034438.17|guanylate-binding protein 8
mm39_v1_chr19_-_4384029_4384059	5.2339	Sox2	ENSMUST00000176653.2|Kdm2a|ENSMUSG00000054611.18|lysine (K)-specific demethylase 2A
mm39_v1_chr17_+_35278011_35278113	5.23256	Sox2	ENSMUST00000007255.13|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2	ENSMUST00000174493.8|Ddah2|ENSMUSG00000007039.13|dimethylarginine dimethylaminohydrolase 2
mm39_v1_chr3_-_98767090_98767116	5.23127	Sox2	ENSMUST00000107016.10|Hsd3b1|ENSMUSG00000027871.17|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	ENSMUST00000029465.10|Hsd3b1|ENSMUSG00000027871.17|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm39_v1_chr14_+_79753055_79753148	5.22421	Sox2	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr15_+_99936516_99936552	5.22294	Sox2	ENSMUST00000100203.10|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr11_+_61544085_61544181	5.21714	Sox2	ENSMUST00000004959.3|Grap|ENSMUSG00000004837.3|GRB2-related adaptor protein
mm39_v1_chr9_+_99125420_99125535	5.21316	Sox2	ENSMUST00000185799.7|Cep70|ENSMUSG00000056267.15|centrosomal protein 70	ENSMUST00000093795.10|Cep70|ENSMUSG00000056267.15|centrosomal protein 70	ENSMUST00000190715.7|Cep70|ENSMUSG00000056267.15|centrosomal protein 70	ENSMUST00000191335.7|Cep70|ENSMUSG00000056267.15|centrosomal protein 70	ENSMUST00000190078.7|Cep70|ENSMUSG00000056267.15|centrosomal protein 70
mm39_v1_chr5_-_110534828_110535020	5.20545	Sox2	ENSMUST00000198834.2|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1	ENSMUST00000056124.11|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1
mm39_v1_chr1_-_79836344_79836413	5.19966	Sox2	ENSMUST00000027467.11|Serpine2|ENSMUSG00000026249.11|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm39_v1_chr3_+_7568481_7568564	5.19472	Sox2	ENSMUST00000051064.9|Zc2hc1a|ENSMUSG00000043542.13|zinc finger, C2HC-type containing 1A	ENSMUST00000193010.2|Zc2hc1a|ENSMUSG00000043542.13|zinc finger, C2HC-type containing 1A
mm39_v1_chr10_+_39245746_39245808	5.17312	Sox2	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr3_+_14598927_14598950	5.17094	Sox2	ENSMUST00000163660.8|Lrrcc1|ENSMUSG00000027550.15|leucine rich repeat and coiled-coil domain containing 1
mm39_v1_chr11_+_45946800_45946895	5.14661	Sox2	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr2_-_6726998_6727060	5.11142	Sox2	ENSMUST00000182657.2|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr11_-_62680228_62680269	5.10101	Sox2	ENSMUST00000207597.2|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286	ENSMUST00000108705.8|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr1_-_181847492_181847555	5.09592	Sox2	ENSMUST00000177811.8|Enah|ENSMUSG00000022995.17|ENAH actin regulator	ENSMUST00000111025.8|Enah|ENSMUSG00000022995.17|ENAH actin regulator	ENSMUST00000111024.10|Enah|ENSMUSG00000022995.17|ENAH actin regulator
mm39_v1_chr2_-_7400780_7400842	5.08864	Sox2	ENSMUST00000002176.13|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr1_-_55265925_55265971	5.07519	Sox2	ENSMUST00000027121.15|Rftn2|ENSMUSG00000025978.15|raftlin family member 2	ENSMUST00000114428.3|Rftn2|ENSMUSG00000025978.15|raftlin family member 2
mm39_v1_chr18_+_34757687_34757788	5.07163	Sox2	ENSMUST00000237407.2|Kif20a|ENSMUSG00000003779.17|kinesin family member 20A
mm39_v1_chr15_-_79326001_79326062	5.06748	Sox2	ENSMUST00000122044.8|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon	ENSMUST00000135519.2|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon
mm39_v1_chr11_-_116303791_116303830	5.06056	Sox2	ENSMUST00000100202.10|Rnf157|ENSMUSG00000052949.15|ring finger protein 157	ENSMUST00000106398.9|Rnf157|ENSMUSG00000052949.15|ring finger protein 157
mm39_v1_chr9_-_112016834_112016930	5.05221	Sox2	ENSMUST00000111872.9|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21	ENSMUST00000164754.9|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21
mm39_v1_chr4_+_134195631_134195720	5.04615	Sox2	ENSMUST00000030636.11|Stmn1|ENSMUSG00000028832.12|stathmin 1	ENSMUST00000127279.8|Stmn1|ENSMUSG00000028832.12|stathmin 1	ENSMUST00000105867.8|Stmn1|ENSMUSG00000028832.12|stathmin 1
mm39_v1_chr16_+_16888145_16888186	5.03406	Sox2	ENSMUST00000232574.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr1_-_54965470_54965561	5.032	Sox2	ENSMUST00000179030.8|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44	ENSMUST00000044359.16|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44
mm39_v1_chr10_-_38998272_38998310	5.02688	Sox2	ENSMUST00000136546.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr4_-_149760488_149760521	5.02033	Sox2	ENSMUST00000118704.8|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
mm39_v1_chr7_+_24596806_24596941	5.00891	Sox2	ENSMUST00000003469.8|Cd79a|ENSMUSG00000003379.8|CD79A antigen (immunoglobulin-associated alpha)
mm39_v1_chr11_+_69737437_69737476	5.00814	Sox2	ENSMUST00000152566.8|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3	ENSMUST00000108633.9|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr9_+_110867807_110867873	4.9919	Sox2	ENSMUST00000197575.2|Ltf|ENSMUSG00000032496.8|lactotransferrin
mm39_v1_chr5_-_138169253_138169296	4.9788	Sox2	ENSMUST00000139983.8|Mcm7|ENSMUSG00000029730.17|minichromosome maintenance complex component 7
mm39_v1_chr8_+_112262729_112262815	4.96472	Sox2	ENSMUST00000172856.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chr1_-_132318039_132318105	4.95343	Sox2	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr15_-_42540363_42540376	4.95203	Sox2	ENSMUST00000022921.7|Angpt1|ENSMUSG00000022309.10|angiopoietin 1
mm39_v1_chr15_-_96540760_96540865	4.93241	Sox2	ENSMUST00000088452.11|Slc38a1|ENSMUSG00000023169.16|solute carrier family 38, member 1
mm39_v1_chr8_+_11778039_11778105	4.90833	Sox2	ENSMUST00000110909.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr11_+_3239165_3239281	4.90042	Sox2	ENSMUST00000134089.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr17_+_47815968_47815991	4.88837	Sox2	ENSMUST00000182129.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3	ENSMUST00000171031.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr5_-_122917341_122917496	4.88719	Sox2	ENSMUST00000198257.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000199599.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000196742.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000200109.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000111668.8|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm39_v1_chr4_+_108316568_108316647	4.87611	Sox2	ENSMUST00000106673.8|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4	ENSMUST00000043368.12|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr10_-_21036824_21036883	4.87391	Sox2	ENSMUST00000020158.9|Myb|ENSMUSG00000019982.16|myeloblastosis oncogene
mm39_v1_chr5_-_38316296_38316375	4.86985	Sox2	ENSMUST00000201415.4|Nsg1|ENSMUSG00000029126.8|neuron specific gene family member 1
mm39_v1_chr18_+_43897354_43897398	4.84348	Sox2	ENSMUST00000187157.7|Scgb3a2|ENSMUSG00000038791.15|secretoglobin, family 3A, member 2	ENSMUST00000043803.13|Scgb3a2|ENSMUSG00000038791.15|secretoglobin, family 3A, member 2	ENSMUST00000189750.2|Scgb3a2|ENSMUSG00000038791.15|secretoglobin, family 3A, member 2
mm39_v1_chr12_-_26465130_26465215	4.8254	Sox2	ENSMUST00000222082.2|Rnf144a|ENSMUSG00000020642.14|ring finger protein 144A	ENSMUST00000062149.6|Rnf144a|ENSMUSG00000020642.14|ring finger protein 144A
mm39_v1_chr11_-_94376158_94376182	4.81481	Sox2	ENSMUST00000041705.8|Spata20|ENSMUSG00000020867.14|spermatogenesis associated 20
mm39_v1_chr4_+_48585275_48585365	4.80409	Sox2	ENSMUST00000123476.8|Tmeff1|ENSMUSG00000028347.15|transmembrane protein with EGF-like and two follistatin-like domains 1
mm39_v1_chr6_-_87312743_87312748	4.78554	Sox2	ENSMUST00000042025.12|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1	ENSMUST00000205033.2|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1
mm39_v1_chr12_-_100995242_100995302	4.77493	Sox2	ENSMUST00000085096.10|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr17_-_36149142_36149198	4.77204	Sox2	ENSMUST00000001566.10|Tubb5|ENSMUSG00000001525.11|tubulin, beta 5 class I
mm39_v1_chr5_+_107479023_107479063	4.77125	Sox2	ENSMUST00000031215.15|Brdt|ENSMUSG00000029279.16|bromodomain, testis-specific	ENSMUST00000112677.10|Brdt|ENSMUSG00000029279.16|bromodomain, testis-specific
mm39_v1_chr5_-_138169509_138169536	4.76668	Sox2	ENSMUST00000153867.8|Mcm7|ENSMUSG00000029730.17|minichromosome maintenance complex component 7
mm39_v1_chrX_+_151922936_151923006	4.76464	Sox2	ENSMUST00000039720.11|Rragb|ENSMUSG00000041658.13|Ras-related GTP binding B	ENSMUST00000144175.3|Rragb|ENSMUSG00000041658.13|Ras-related GTP binding B
mm39_v1_chr6_+_71684846_71684862	4.7587	Sox2	ENSMUST00000212792.2|Reep1|ENSMUSG00000052852.9|receptor accessory protein 1
mm39_v1_chr9_+_27308497_27308530	4.73593	Sox2	ENSMUST00000214287.2|Spata19|ENSMUSG00000031991.11|spermatogenesis associated 19
mm39_v1_chr1_-_33853598_33853655	4.72401	Sox2	ENSMUST00000019861.13|Zfp451|ENSMUSG00000042197.14|zinc finger protein 451	ENSMUST00000044455.8|Zfp451|ENSMUSG00000042197.14|zinc finger protein 451
mm39_v1_chr12_-_26465253_26465303	4.7009	Sox2	ENSMUST00000020971.14|Rnf144a|ENSMUSG00000020642.14|ring finger protein 144A
mm39_v1_chr8_+_84627332_84627364	4.69373	Sox2	ENSMUST00000045393.15|Adgrl1|ENSMUSG00000013033.17|adhesion G protein-coupled receptor L1	ENSMUST00000132500.8|Adgrl1|ENSMUSG00000013033.17|adhesion G protein-coupled receptor L1	ENSMUST00000152978.8|Adgrl1|ENSMUSG00000013033.17|adhesion G protein-coupled receptor L1
mm39_v1_chr17_+_47816042_47816057	4.69289	Sox2	ENSMUST00000183044.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3	ENSMUST00000037333.17|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr4_+_102427247_102427306	4.68383	Sox2	ENSMUST00000097950.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr1_-_189075515_189075555	4.64533	Sox2	ENSMUST00000193319.6|Kcnk2|ENSMUSG00000037624.16|potassium channel, subfamily K, member 2
mm39_v1_chr17_+_47816074_47816091	4.63996	Sox2	ENSMUST00000183177.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3	ENSMUST00000182848.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr18_+_34758062_34758090	4.63587	Sox2	ENSMUST00000166044.3|Kif20a|ENSMUSG00000003779.17|kinesin family member 20A
mm39_v1_chr7_+_89780785_89780853	4.62773	Sox2	ENSMUST00000208684.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr6_+_86381201_86381222	4.60865	Sox2	ENSMUST00000095754.10|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1	ENSMUST00000095753.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr9_-_110453427_110453520	4.5969	Sox2	ENSMUST00000196876.2|Nradd|ENSMUSG00000032491.15|neurotrophin receptor associated death domain	ENSMUST00000035069.14|Nradd|ENSMUSG00000032491.15|neurotrophin receptor associated death domain
mm39_v1_chr11_+_117223161_117223174	4.56077	Sox2	ENSMUST00000106349.2|Septin9|ENSMUSG00000059248.14|septin 9
mm39_v1_chr2_+_32511762_32511786	4.5551	Sox2	ENSMUST00000113278.9|Ak1|ENSMUSG00000026817.15|adenylate kinase 1
mm39_v1_chr1_+_160970276_160970337	4.55361	Sox2	ENSMUST00000111608.8|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45	ENSMUST00000052245.9|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45
mm39_v1_chr18_+_37622518_37622518	4.54865	Sox2	ENSMUST00000055949.4|Pcdhb18|ENSMUSG00000048347.6|protocadherin beta 18
mm39_v1_chr5_+_120787253_120787325	4.54323	Sox2	ENSMUST00000156722.2|Rasal1|ENSMUSG00000029602.12|RAS protein activator like 1 (GAP1 like)
mm39_v1_chr11_+_6339330_6339397	4.54231	Sox2	ENSMUST00000012612.11|Zmiz2|ENSMUSG00000041164.16|zinc finger, MIZ-type containing 2
mm39_v1_chr2_+_156154219_156154347	4.53722	Sox2	ENSMUST00000037096.9|Cnbd2|ENSMUSG00000038085.14|cyclic nucleotide binding domain containing 2
mm39_v1_chr5_+_137759934_137759978	4.53251	Sox2	ENSMUST00000110983.3|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4	ENSMUST00000031738.5|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4
mm39_v1_chr13_-_43632368_43632395	4.528	Sox2	ENSMUST00000222651.2|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr10_-_21036792_21036810	4.51299	Sox2	ENSMUST00000188495.8|Myb|ENSMUSG00000019982.16|myeloblastosis oncogene
mm39_v1_chr14_+_61836944_61836997	4.50662	Sox2	ENSMUST00000039562.8|Trim13|ENSMUSG00000035235.14|tripartite motif-containing 13
mm39_v1_chr6_-_99643723_99643784	4.50142	Sox2	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr7_+_24602337_24602510	4.498	Sox2	ENSMUST00000117796.8|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000047873.16|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000098683.11|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206508.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206028.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr6_-_40906665_40906676	4.48888	Sox2	ENSMUST00000136499.2|1700074P13Rik|ENSMUSG00000029883.13|RIKEN cDNA 1700074P13 gene
mm39_v1_chr7_-_10229249_10229328	4.48853	Sox2	ENSMUST00000032551.8|Zik1|ENSMUSG00000030393.9|zinc finger protein interacting with K protein 1
mm39_v1_chr5_-_38316706_38316798	4.48477	Sox2	ENSMUST00000201341.2|Nsg1|ENSMUSG00000029126.8|neuron specific gene family member 1	ENSMUST00000201363.4|Nsg1|ENSMUSG00000029126.8|neuron specific gene family member 1	ENSMUST00000201134.2|Nsg1|ENSMUSG00000029126.8|neuron specific gene family member 1
mm39_v1_chr10_+_96453408_96453419	4.47658	Sox2	ENSMUST00000218953.2|Btg1|ENSMUSG00000036478.9|BTG anti-proliferation factor 1
mm39_v1_chr3_-_57755500_57755519	4.45478	Sox2	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr6_+_71684872_71684891	4.42733	Sox2	ENSMUST00000212631.2|Reep1|ENSMUSG00000052852.9|receptor accessory protein 1
mm39_v1_chr17_-_36149100_36149135	4.41068	Sox2	ENSMUST00000134978.3|Tubb5|ENSMUSG00000001525.11|tubulin, beta 5 class I
mm39_v1_chr2_+_18059982_18060048	4.40423	Sox2	ENSMUST00000028076.15|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr12_+_95658987_95659011	4.39241	Sox2	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr16_-_34334314_34334427	4.39086	Sox2	ENSMUST00000151491.8|Kalrn|ENSMUSG00000061751.17|kalirin, RhoGEF kinase	ENSMUST00000114960.9|Kalrn|ENSMUSG00000061751.17|kalirin, RhoGEF kinase
mm39_v1_chr6_+_29281134_29281147	4.38971	Sox2	ENSMUST00000115286.4|Fam71f2|ENSMUSG00000079652.9|family with sequence similarity 71, member F2
mm39_v1_chr2_-_38604503_38604554	4.38843	Sox2	ENSMUST00000028084.5|Nr5a1|ENSMUSG00000026751.15|nuclear receptor subfamily 5, group A, member 1
mm39_v1_chr15_-_79542950_79543001	4.37282	Sox2	ENSMUST00000109646.9|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A	ENSMUST00000187519.7|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A	ENSMUST00000229064.2|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A
mm39_v1_chr11_+_115272732_115272759	4.37061	Sox2	ENSMUST00000053288.6|Cdr2l|ENSMUSG00000050910.6|cerebellar degeneration-related protein 2-like
mm39_v1_chr3_+_40699862_40699891	4.34652	Sox2	ENSMUST00000204702.3|Hspa4l|ENSMUSG00000025757.14|heat shock protein 4 like
mm39_v1_chr11_-_106606076_106606220	4.34223	Sox2	ENSMUST00000080853.11|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1	ENSMUST00000183610.8|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1	ENSMUST00000103069.10|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1	ENSMUST00000106796.9|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1
mm39_v1_chr9_-_58277734_58277741	4.34126	Sox2	ENSMUST00000040217.6|Tbc1d21|ENSMUSG00000036244.6|TBC1 domain family, member 21
mm39_v1_chr4_-_128699838_128699966	4.33934	Sox2	ENSMUST00000106072.9|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362	ENSMUST00000170934.3|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362
mm39_v1_chr3_+_40699763_40699814	4.32714	Sox2	ENSMUST00000203353.3|Hspa4l|ENSMUSG00000025757.14|heat shock protein 4 like
mm39_v1_chrX_+_99773784_99773795	4.3236	Sox2	ENSMUST00000113744.2|Gdpd2|ENSMUSG00000019359.15|glycerophosphodiester phosphodiesterase domain containing 2
mm39_v1_chr19_-_46027881_46027920	4.32275	Sox2	ENSMUST00000137771.2|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr5_-_34326753_34326809	4.3162	Sox2	ENSMUST00000202409.2|Poln|ENSMUSG00000045102.13|DNA polymerase N	ENSMUST00000202541.2|Haus3|ENSMUSG00000079555.3|HAUS augmin-like complex, subunit 3	ENSMUST00000202638.4|Poln|ENSMUSG00000045102.13|DNA polymerase N	ENSMUST00000042954.11|Poln|ENSMUSG00000045102.13|DNA polymerase N
mm39_v1_chr4_+_5724305_5724357	4.30439	Sox2	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr5_+_34153328_34153375	4.30388	Sox2	ENSMUST00000056355.9|Nat8l|ENSMUSG00000048142.10|N-acetyltransferase 8-like
mm39_v1_chr4_-_132073048_132073058	4.29378	Sox2	ENSMUST00000084250.11|Rcc1|ENSMUSG00000028896.14|regulator of chromosome condensation 1
mm39_v1_chr13_-_61084358_61084439	4.26773	Sox2	ENSMUST00000225859.2|Gm49391|ENSMUSG00000114432.2|predicted gene, 49391	ENSMUST00000225167.2|Gm49391|ENSMUSG00000114432.2|predicted gene, 49391	ENSMUST00000021880.10|Ctla2a|ENSMUSG00000044258.11|cytotoxic T lymphocyte-associated protein 2 alpha
mm39_v1_chr3_-_119576911_119577037	4.25784	Sox2	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr2_+_180222985_180223097	4.25687	Sox2	ENSMUST00000169630.8|Mrgbp|ENSMUSG00000027569.16|MRG/MORF4L binding protein
mm39_v1_chr13_-_19491721_19491721	4.22446	Sox2	ENSMUST00000103561.3|Trgc2|ENSMUSG00000076752.3|T cell receptor gamma, constant 2
mm39_v1_chr11_+_49554430_49554448	4.21793	Sox2	ENSMUST00000043873.10|Scgb3a1|ENSMUSG00000064057.13|secretoglobin, family 3A, member 1	ENSMUST00000076006.5|Scgb3a1|ENSMUSG00000064057.13|secretoglobin, family 3A, member 1
mm39_v1_chr18_-_34757653_34757655	4.21066	Sox2	ENSMUST00000003876.10|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000115766.8|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000097626.10|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000115765.2|Brd8|ENSMUSG00000003778.15|bromodomain containing 8
mm39_v1_chr8_-_4309257_4309284	4.1976	Sox2	ENSMUST00000053252.9|Ctxn1|ENSMUSG00000048644.9|cortexin 1
mm39_v1_chr10_-_80223475_80223501	4.19366	Sox2	ENSMUST00000105350.3|Mex3d|ENSMUSG00000048696.12|mex3 RNA binding family member D
mm39_v1_chr19_-_5779648_5779717	4.19166	Sox2	ENSMUST00000116558.3|Fam89b|ENSMUSG00000024939.7|family with sequence similarity 89, member B	ENSMUST00000099955.4|Fam89b|ENSMUSG00000024939.7|family with sequence similarity 89, member B	ENSMUST00000161368.2|Fam89b|ENSMUSG00000024939.7|family with sequence similarity 89, member B
mm39_v1_chr15_+_98065039_98065039	4.19049	Sox2	ENSMUST00000031914.6|Ccdc184|ENSMUSG00000029875.6|coiled-coil domain containing 184
mm39_v1_chr15_-_103123711_103123793	4.1882	Sox2	ENSMUST00000122182.2|Cbx5|ENSMUSG00000009575.15|chromobox 5	ENSMUST00000108813.10|Cbx5|ENSMUSG00000009575.15|chromobox 5	ENSMUST00000127191.2|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr2_-_7400690_7400735	4.18517	Sox2	ENSMUST00000182404.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr3_-_108117754_108117818	4.18489	Sox2	ENSMUST00000117784.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2	ENSMUST00000119650.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2	ENSMUST00000117409.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2
mm39_v1_chr18_-_34730521_34730521	4.18375	Sox2	ENSMUST00000056932.9|Brd8dc|ENSMUSG00000049357.12|BRD8 domain containing
mm39_v1_chr11_-_86999481_86999545	4.18166	Sox2	ENSMUST00000051395.9|Prr11|ENSMUSG00000020493.9|proline rich 11
mm39_v1_chr11_+_80367839_80367910	4.1775	Sox2	ENSMUST00000053413.12|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	ENSMUST00000147694.2|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm39_v1_chr11_-_3724706_3724740	4.17014	Sox2	ENSMUST00000155197.2|Osbp2|ENSMUSG00000020435.18|oxysterol binding protein 2
mm39_v1_chr12_+_3415107_3415142	4.17014	Sox2	ENSMUST00000220210.2|Kif3c|ENSMUSG00000020668.11|kinesin family member 3C
mm39_v1_chr17_+_47816137_47816166	4.16418	Sox2	ENSMUST00000182935.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3	ENSMUST00000182506.8|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr4_+_133829891_133829896	4.1609	Sox2	ENSMUST00000074690.11|Ubxn11|ENSMUSG00000012126.17|UBX domain protein 11
mm39_v1_chr3_+_90383425_90383531	4.15011	Sox2	ENSMUST00000001042.10|Ilf2|ENSMUSG00000001016.13|interleukin enhancer binding factor 2
mm39_v1_chr9_-_108455899_108455938	4.12572	Sox2	ENSMUST00000068700.7|Wdr6|ENSMUSG00000066357.7|WD repeat domain 6
mm39_v1_chr15_-_102630496_102630572	4.12333	Sox2	ENSMUST00000171838.2|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr14_+_7030760_7030788	4.11772	Sox2	ENSMUST00000055211.6|Lrrc3b|ENSMUSG00000045201.7|leucine rich repeat containing 3B
mm39_v1_chr15_-_103160082_103160127	4.11086	Sox2	ENSMUST00000149111.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000132836.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr3_-_88669551_88669691	4.10918	Sox2	ENSMUST00000183267.2|Syt11|ENSMUSG00000068923.15|synaptotagmin XI
mm39_v1_chr11_+_50248586_50248600	4.1084	Sox2	ENSMUST00000052596.3|Cby3|ENSMUSG00000050087.4|chibby family member 3
mm39_v1_chr12_+_104067346_104067372	4.10799	Sox2	ENSMUST00000021495.4|Serpina5|ENSMUSG00000041550.5|serine (or cysteine) peptidase inhibitor, clade A, member 5
mm39_v1_chr16_-_18884431_18884431	4.10512	Sox2	ENSMUST00000200235.2|Iglc3|ENSMUSG00000105547.2|immunoglobulin lambda constant 3
mm39_v1_chr2_-_151815307_151815319	4.10302	Sox2	ENSMUST00000109863.2|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr17_+_34544632_34544654	4.09879	Sox2	ENSMUST00000050325.10|H2-Eb2|ENSMUSG00000067341.7|histocompatibility 2, class II antigen E beta2
mm39_v1_chr9_-_112016966_112017005	4.09622	Sox2	ENSMUST00000178410.2|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21	ENSMUST00000172380.10|Arpp21|ENSMUSG00000032503.19|cyclic AMP-regulated phosphoprotein, 21
mm39_v1_chr6_+_125529911_125529943	4.09429	Sox2	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr11_+_32405367_32405438	4.08956	Sox2	ENSMUST00000051053.5|Ubtd2|ENSMUSG00000044949.5|ubiquitin domain containing 2
mm39_v1_chr4_+_133829898_133829929	4.07759	Sox2	ENSMUST00000070246.9|Ubxn11|ENSMUSG00000012126.17|UBX domain protein 11	ENSMUST00000156750.2|Ubxn11|ENSMUSG00000012126.17|UBX domain protein 11
mm39_v1_chr11_-_3813895_3813909	4.06821	Sox2	ENSMUST00000070552.14|Osbp2|ENSMUSG00000020435.18|oxysterol binding protein 2
mm39_v1_chr2_-_181240921_181241028	4.05023	Sox2	ENSMUST00000060173.9|Samd10|ENSMUSG00000038605.12|sterile alpha motif domain containing 10
mm39_v1_chr8_-_106363982_106364025	4.04557	Sox2	ENSMUST00000182863.2|Gm5914|ENSMUSG00000098120.2|predicted gene 5914	ENSMUST00000194091.6|Agrp|ENSMUSG00000005705.11|agouti related neuropeptide
mm39_v1_chr5_+_81169430_81169440	4.04149	Sox2	ENSMUST00000121707.8|Adgrl3|ENSMUSG00000037605.17|adhesion G protein-coupled receptor L3
mm39_v1_chr9_+_27308087_27308119	4.03985	Sox2	ENSMUST00000214158.2|Spata19|ENSMUSG00000031991.11|spermatogenesis associated 19	ENSMUST00000034473.7|Spata19|ENSMUSG00000031991.11|spermatogenesis associated 19
mm39_v1_chr4_+_43957677_43957736	4.03569	Sox2	ENSMUST00000107855.2|Glipr2|ENSMUSG00000028480.15|GLI pathogenesis-related 2
mm39_v1_chr19_-_46028060_46028102	4.03057	Sox2	ENSMUST00000056931.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr2_+_13578738_13578840	4.0203	Sox2	ENSMUST00000141365.3|Vim|ENSMUSG00000026728.10|vimentin	ENSMUST00000028062.8|Vim|ENSMUSG00000026728.10|vimentin
mm39_v1_chr7_-_78798790_78798810	3.99087	Sox2	ENSMUST00000107409.5|Mfge8|ENSMUSG00000030605.16|milk fat globule EGF and factor V/VIII domain containing	ENSMUST00000032825.14|Mfge8|ENSMUSG00000030605.16|milk fat globule EGF and factor V/VIII domain containing
mm39_v1_chr15_-_102630589_102630613	3.98894	Sox2	ENSMUST00000023818.11|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr17_+_72076678_72076721	3.98358	Sox2	ENSMUST00000230427.2|Clip4|ENSMUSG00000024059.11|CAP-GLY domain containing linker protein family, member 4	ENSMUST00000229952.2|Clip4|ENSMUSG00000024059.11|CAP-GLY domain containing linker protein family, member 4	ENSMUST00000230333.2|Clip4|ENSMUSG00000024059.11|CAP-GLY domain containing linker protein family, member 4
mm39_v1_chr10_-_30531832_30531863	3.97927	Sox2	ENSMUST00000217138.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000217644.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000216172.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr7_+_80510658_80510722	3.97735	Sox2	ENSMUST00000132163.8|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2	ENSMUST00000205361.2|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2	ENSMUST00000147125.2|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2
mm39_v1_chr19_-_7360350_7360366	3.97576	Sox2	ENSMUST00000025924.4|Spindoc|ENSMUSG00000024970.6|spindlin interactor and repressor of chromatin binding
mm39_v1_chr5_-_105287405_105287452	3.96953	Sox2	ENSMUST00000100961.5|Gbp9|ENSMUSG00000029298.16|guanylate-binding protein 9	ENSMUST00000031235.13|Gbp8|ENSMUSG00000034438.17|guanylate-binding protein 8	ENSMUST00000197799.2|Gbp4|ENSMUSG00000079363.8|guanylate binding protein 4	ENSMUST00000199629.2|Gbp4|ENSMUSG00000079363.8|guanylate binding protein 4	ENSMUST00000196677.5|Gbp4|ENSMUSG00000079363.8|guanylate binding protein 4	ENSMUST00000100962.8|Gbp4|ENSMUSG00000079363.8|guanylate binding protein 4
mm39_v1_chr11_+_51152546_51152558	3.96704	Sox2	ENSMUST00000130641.8|Clk4|ENSMUSG00000020385.17|CDC like kinase 4
mm39_v1_chr8_+_23247760_23247777	3.94405	Sox2	ENSMUST00000033941.7|Plat|ENSMUSG00000031538.7|plasminogen activator, tissue
mm39_v1_chr11_+_69737200_69737212	3.92247	Sox2	ENSMUST00000108632.8|Plscr3|ENSMUSG00000019461.13|phospholipid scramblase 3
mm39_v1_chr13_+_19528728_19528728	3.91489	Sox2	ENSMUST00000179181.3|Trgc4|ENSMUSG00000076757.10|T cell receptor gamma, constant 4
mm39_v1_chr3_-_95135946_95136043	3.91106	Sox2	ENSMUST00000065482.6|Mllt11|ENSMUSG00000053192.10|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11
mm39_v1_chr5_+_27109679_27109709	3.90812	Sox2	ENSMUST00000120555.8|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr1_-_28819331_28819333	3.88958	Sox2	ENSMUST00000059937.5|Gm597|ENSMUSG00000048411.5|predicted gene 597
mm39_v1_chr13_+_21365308_21365338	3.8842	Sox2	ENSMUST00000221464.2|Trim27|ENSMUSG00000021326.14|tripartite motif-containing 27
mm39_v1_chr5_+_143534455_143534516	3.88374	Sox2	ENSMUST00000169329.8|Fam220a|ENSMUSG00000118332.2|family with sequence similarity 220, member A	ENSMUST00000067145.12|Fam220a|ENSMUSG00000118332.2|family with sequence similarity 220, member A	ENSMUST00000119488.2|Fam220a|ENSMUSG00000118332.2|family with sequence similarity 220, member A	ENSMUST00000200267.2|Fam220a|ENSMUSG00000083012.10|family with sequence similarity 220, member A	ENSMUST00000118121.2|Fam220a|ENSMUSG00000118332.2|family with sequence similarity 220, member A	ENSMUST00000196487.2|Fam220a|ENSMUSG00000083012.10|family with sequence similarity 220, member A
mm39_v1_chr14_-_52553764_52553781	3.87739	Sox2	ENSMUST00000135523.5|Sall2|ENSMUSG00000049532.12|spalt like transcription factor 2
mm39_v1_chr7_+_126832215_126832248	3.87506	Sox2	ENSMUST00000106312.4|Zfp553|ENSMUSG00000045598.11|zinc finger protein 553
mm39_v1_chr11_+_67477347_67477366	3.872	Sox2	ENSMUST00000108682.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr11_+_70323452_70323533	3.87122	Sox2	ENSMUST00000084954.13|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000108568.10|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000079056.9|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102564.11|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000124943.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000150076.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102563.2|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2
mm39_v1_chr19_+_4264292_4264417	3.87064	Sox2	ENSMUST00000046506.7|Clcf1|ENSMUSG00000040663.10|cardiotrophin-like cytokine factor 1
mm39_v1_chr19_+_7394951_7395015	3.86609	Sox2	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr13_-_8908798_8908865	3.86479	Sox2	ENSMUST00000176329.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chrX_-_165992311_165992475	3.86449	Sox2	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr15_-_98851423_98851441	3.86287	Sox2	ENSMUST00000134214.3|Gm49450|ENSMUSG00000116358.2|predicted gene, 49450
mm39_v1_chr16_-_10614679_10614750	3.86132	Sox2	ENSMUST00000023144.6|Prm1|ENSMUSG00000022501.7|protamine 1
mm39_v1_chr5_-_100186728_100186744	3.86113	Sox2	ENSMUST00000153442.8|Hnrnpdl|ENSMUSG00000029328.16|heterogeneous nuclear ribonucleoprotein D-like
mm39_v1_chr8_+_106785434_106785472	3.86069	Sox2	ENSMUST00000212742.2|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	ENSMUST00000211991.2|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr10_+_79986988_79987212	3.86026	Sox2	ENSMUST00000146516.8|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000144526.2|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr1_+_135768595_135768617	3.8498	Sox2	ENSMUST00000112087.9|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000178854.8|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000027671.12|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000179863.8|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000112085.9|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000112086.3|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac
mm39_v1_chr17_-_25492129_25492235	3.84851	Sox2	ENSMUST00000173231.2|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr10_-_84276454_84276468	3.84841	Sox2	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr8_+_110432132_110432181	3.8451	Sox2	ENSMUST00000212964.2|Zfp821|ENSMUSG00000031728.11|zinc finger protein 821	ENSMUST00000034163.9|Zfp821|ENSMUSG00000031728.11|zinc finger protein 821
mm39_v1_chr9_-_75504926_75504938	3.84451	Sox2	ENSMUST00000164100.2|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr7_-_84059321_84059384	3.83326	Sox2	ENSMUST00000085077.5|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2	ENSMUST00000207769.2|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2
mm39_v1_chr11_-_62680273_62680303	3.83301	Sox2	ENSMUST00000054654.13|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr9_+_61280890_61280954	3.82687	Sox2	ENSMUST00000161689.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr4_+_135899678_135899738	3.81894	Sox2	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr2_-_59955995_59956119	3.80791	Sox2	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr2_+_3714492_3714507	3.80285	Sox2	ENSMUST00000027965.11|Fam107b|ENSMUSG00000026655.16|family with sequence similarity 107, member B
mm39_v1_chr18_+_34757666_34757683	3.80173	Sox2	ENSMUST00000167161.9|Kif20a|ENSMUSG00000003779.17|kinesin family member 20A
mm39_v1_chr17_-_50401305_50401360	3.80065	Sox2	ENSMUST00000113195.8|Rftn1|ENSMUSG00000039316.15|raftlin lipid raft linker 1
mm39_v1_chr1_+_6285082_6285232	3.79462	Sox2	ENSMUST00000160062.8|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr15_+_79543397_79543468	3.78605	Sox2	ENSMUST00000023064.9|Cby1|ENSMUSG00000022428.9|chibby family member 1, beta catenin antagonist
mm39_v1_chr9_-_57673128_57673191	3.78393	Sox2	ENSMUST00000065330.8|Clk3|ENSMUSG00000032316.9|CDC-like kinase 3
mm39_v1_chr17_-_56769193_56769243	3.77429	Sox2	ENSMUST00000086828.10|Ptprs|ENSMUSG00000013236.18|protein tyrosine phosphatase, receptor type, S
mm39_v1_chr2_-_60793536_60793595	3.76914	Sox2	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr15_-_9529898_9529932	3.76644	Sox2	ENSMUST00000228782.2|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor	ENSMUST00000003981.6|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor
mm39_v1_chr3_+_7431717_7431730	3.76198	Sox2	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr16_+_4653271_4653286	3.74235	Sox2	ENSMUST00000100211.11|4930562C15Rik|ENSMUSG00000022518.17|RIKEN cDNA 4930562C15 gene
mm39_v1_chr15_-_97729341_97729393	3.73951	Sox2	ENSMUST00000079838.14|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7	ENSMUST00000118294.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr10_-_80269436_80269488	3.73765	Sox2	ENSMUST00000105346.10|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000020377.13|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000105340.8|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000020379.13|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000105344.8|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000105342.8|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000105345.10|Tcf3|ENSMUSG00000020167.15|transcription factor 3	ENSMUST00000105343.8|Tcf3|ENSMUSG00000020167.15|transcription factor 3
mm39_v1_chr19_-_10847121_10847304	3.72277	Sox2	ENSMUST00000120524.2|Tmem132a|ENSMUSG00000024736.16|transmembrane protein 132A	ENSMUST00000025645.14|Tmem132a|ENSMUSG00000024736.16|transmembrane protein 132A
mm39_v1_chr10_-_62363192_62363214	3.72228	Sox2	ENSMUST00000160643.8|Srgn|ENSMUSG00000020077.15|serglycin
mm39_v1_chr12_-_72283465_72283498	3.71717	Sox2	ENSMUST00000021497.16|Rtn1|ENSMUSG00000021087.19|reticulon 1	ENSMUST00000137990.2|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr2_-_156154667_156154667	3.71635	Sox2	ENSMUST00000079125.8|Scand1|ENSMUSG00000046229.11|SCAN domain-containing 1
mm39_v1_chr1_+_135764092_135764151	3.71213	Sox2	ENSMUST00000188028.7|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000178204.8|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000190451.7|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000189732.7|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac	ENSMUST00000189355.7|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac
mm39_v1_chr12_+_110567873_110567886	3.70622	Sox2	ENSMUST00000018851.14|Dync1h1|ENSMUSG00000018707.14|dynein cytoplasmic 1 heavy chain 1
mm39_v1_chr13_+_42862957_42863057	3.70119	Sox2	ENSMUST00000066928.12|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1	ENSMUST00000148891.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr10_+_67021509_67021547	3.69291	Sox2	ENSMUST00000173689.8|Jmjd1c|ENSMUSG00000037876.18|jumonji domain containing 1C
mm39_v1_chr4_-_148244028_148244106	3.68693	Sox2	ENSMUST00000167160.8|Fbxo44|ENSMUSG00000029001.16|F-box protein 44	ENSMUST00000151246.8|Fbxo44|ENSMUSG00000029001.16|F-box protein 44
mm39_v1_chr1_+_171723231_171723231	3.67808	Sox2	ENSMUST00000097466.3|Gm10521|ENSMUSG00000073492.3|predicted gene 10521
mm39_v1_chr16_-_20244631_20244736	3.6698	Sox2	ENSMUST00000077867.10|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr15_-_100497863_100497920	3.66979	Sox2	ENSMUST00000073837.13|Pou6f1|ENSMUSG00000009739.18|POU domain, class 6, transcription factor 1
mm39_v1_chr9_+_109881083_109881181	3.66653	Sox2	ENSMUST00000164930.8|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4	ENSMUST00000199498.5|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4
mm39_v1_chrX_+_91533555_91533555	3.66345	Sox2	ENSMUST00000096371.3|Gm5941|ENSMUSG00000071726.3|predicted gene 5941
mm39_v1_chr8_-_8740471_8740539	3.66277	Sox2	ENSMUST00000048545.10|Arglu1|ENSMUSG00000040459.12|arginine and glutamate rich 1
mm39_v1_chr3_+_40699900_40699930	3.6587	Sox2	ENSMUST00000203496.3|Hspa4l|ENSMUSG00000025757.14|heat shock protein 4 like
mm39_v1_chr13_-_55635851_55635924	3.64679	Sox2	ENSMUST00000109921.9|Dbn1|ENSMUSG00000034675.18|drebrin 1	ENSMUST00000109923.9|Dbn1|ENSMUSG00000034675.18|drebrin 1	ENSMUST00000021950.15|Dbn1|ENSMUSG00000034675.18|drebrin 1
mm39_v1_chr7_-_30577511_30577561	3.633	Sox2	ENSMUST00000214289.2|Cd22|ENSMUSG00000030577.15|CD22 antigen
mm39_v1_chr6_+_116263513_116263544	3.63203	Sox2	ENSMUST00000221069.2|Zfand4|ENSMUSG00000042213.18|zinc finger, AN1-type domain 4
mm39_v1_chrX_-_72868544_72868592	3.62816	Sox2	ENSMUST00000002080.12|Pdzd4|ENSMUSG00000002006.13|PDZ domain containing 4	ENSMUST00000114438.3|Pdzd4|ENSMUSG00000002006.13|PDZ domain containing 4
mm39_v1_chr5_+_67125902_67125920	3.62285	Sox2	ENSMUST00000127184.8|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr5_-_8417982_8418106	3.6178	Sox2	ENSMUST00000088761.11|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115386.8|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000050166.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000046838.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115388.9|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000088744.12|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115385.2|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22
mm39_v1_chr4_-_129517662_129517740	3.61378	Sox2	ENSMUST00000106035.8|Ccdc28b|ENSMUSG00000028795.16|coiled coil domain containing 28B	ENSMUST00000150357.2|Ccdc28b|ENSMUSG00000028795.16|coiled coil domain containing 28B	ENSMUST00000030586.15|Ccdc28b|ENSMUSG00000028795.16|coiled coil domain containing 28B
mm39_v1_chr17_+_29251602_29251655	3.60192	Sox2	ENSMUST00000130216.3|Srsf3|ENSMUSG00000071172.14|serine and arginine-rich splicing factor 3
mm39_v1_chr4_-_42874178_42874195	3.59117	Sox2	ENSMUST00000107978.2|Fam205c|ENSMUSG00000050141.14|family with sequence similarity 205, member C
mm39_v1_chr6_+_65019574_65019651	3.58268	Sox2	ENSMUST00000031984.9|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	ENSMUST00000205118.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chr19_+_4806544_4806654	3.5757	Sox2	ENSMUST00000182821.8|Rbm4b|ENSMUSG00000033760.18|RNA binding motif protein 4B	ENSMUST00000036744.8|Rbm4b|ENSMUSG00000033760.18|RNA binding motif protein 4B
mm39_v1_chr6_-_88852017_88852036	3.56266	Sox2	ENSMUST00000145944.3|Podxl2|ENSMUSG00000033152.14|podocalyxin-like 2
mm39_v1_chr10_-_30647881_30647937	3.562	Sox2	ENSMUST00000215740.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr14_+_70768257_70768287	3.56049	Sox2	ENSMUST00000047331.8|Lgi3|ENSMUSG00000033595.8|leucine-rich repeat LGI family, member 3
mm39_v1_chr18_-_43192483_43192536	3.55488	Sox2	ENSMUST00000025377.14|Ppp2r2b|ENSMUSG00000024500.21|protein phosphatase 2, regulatory subunit B, beta
mm39_v1_chr14_+_73379930_73380005	3.55322	Sox2	ENSMUST00000170370.8|Rcbtb2|ENSMUSG00000022106.15|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	ENSMUST00000164822.8|Rcbtb2|ENSMUSG00000022106.15|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	ENSMUST00000165429.8|Rcbtb2|ENSMUSG00000022106.15|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm39_v1_chr6_+_86381236_86381302	3.55055	Sox2	ENSMUST00000095752.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1	ENSMUST00000130967.8|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr8_+_31601837_31601919	3.5386	Sox2	ENSMUST00000046941.8|Rnf122|ENSMUSG00000039328.12|ring finger protein 122	ENSMUST00000217278.2|Rnf122|ENSMUSG00000039328.12|ring finger protein 122
mm39_v1_chr7_-_134100659_134100713	3.53533	Sox2	ENSMUST00000238294.2|D7Ertd443e|ENSMUSG00000030994.17|DNA segment, Chr 7, ERATO Doi 443, expressed
mm39_v1_chr9_-_83028654_83028738	3.53122	Sox2	ENSMUST00000161796.9|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3	ENSMUST00000162246.9|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3
mm39_v1_chr7_-_111379170_111379200	3.52983	Sox2	ENSMUST00000049430.15|Galnt18|ENSMUSG00000038296.15|polypeptide N-acetylgalactosaminyltransferase 18	ENSMUST00000106663.2|Galnt18|ENSMUSG00000038296.15|polypeptide N-acetylgalactosaminyltransferase 18
mm39_v1_chr4_-_136329953_136330071	3.5233	Sox2	ENSMUST00000105847.8|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A	ENSMUST00000116273.9|Kdm1a|ENSMUSG00000036940.16|lysine (K)-specific demethylase 1A
mm39_v1_chr11_+_60590498_60590575	3.51577	Sox2	ENSMUST00000052346.10|Llgl1|ENSMUSG00000020536.13|LLGL1 scribble cell polarity complex component
mm39_v1_chr3_+_65435825_65435876	3.48796	Sox2	ENSMUST00000047906.10|Tiparp|ENSMUSG00000034640.10|TCDD-inducible poly(ADP-ribose) polymerase
mm39_v1_chr2_+_84564394_84564451	3.47157	Sox2	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr18_+_37884653_37884705	3.47101	Sox2	ENSMUST00000194928.2|Pcdhgb7|ENSMUSG00000104063.2|protocadherin gamma subfamily B, 7
mm39_v1_chr4_+_148215339_148215372	3.46644	Sox2	ENSMUST00000084129.9|Mad2l2|ENSMUSG00000029003.12|MAD2 mitotic arrest deficient-like 2
mm39_v1_chr15_-_8739893_8739983	3.46375	Sox2	ENSMUST00000157065.2|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr12_+_85043083_85043193	3.46324	Sox2	ENSMUST00000168977.8|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1	ENSMUST00000021670.15|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr18_+_11766333_11766414	3.45441	Sox2	ENSMUST00000115861.9|Rbbp8|ENSMUSG00000041238.17|retinoblastoma binding protein 8, endonuclease
mm39_v1_chr10_+_28544556_28544633	3.45062	Sox2	ENSMUST00000161345.2|Themis|ENSMUSG00000049109.16|thymocyte selection associated
mm39_v1_chr8_-_11685726_11685769	3.4275	Sox2	ENSMUST00000033905.13|Ankrd10|ENSMUSG00000031508.15|ankyrin repeat domain 10	ENSMUST00000169782.3|Ankrd10|ENSMUSG00000031508.15|ankyrin repeat domain 10
mm39_v1_chr13_-_117161921_117161980	3.42573	Sox2	ENSMUST00000223949.2|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr7_-_73663422_73663446	3.4227	Sox2	ENSMUST00000026896.10|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	ENSMUST00000191970.2|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm39_v1_chr1_-_36596598_36596642	3.41682	Sox2	ENSMUST00000191642.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	ENSMUST00000193382.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	ENSMUST00000195620.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm39_v1_chr9_-_57672375_57672432	3.41507	Sox2	ENSMUST00000215233.2|Clk3|ENSMUSG00000032316.9|CDC-like kinase 3
mm39_v1_chr13_-_34314328_34314344	3.41115	Sox2	ENSMUST00000075774.5|Tubb2b|ENSMUSG00000045136.7|tubulin, beta 2B class IIB
mm39_v1_chr4_-_42874197_42874223	3.40853	Sox2	ENSMUST00000055944.11|Fam205c|ENSMUSG00000050141.14|family with sequence similarity 205, member C
mm39_v1_chr7_-_24705320_24705383	3.40711	Sox2	ENSMUST00000102858.10|Atp1a3|ENSMUSG00000040907.16|ATPase, Na+/K+ transporting, alpha 3 polypeptide	ENSMUST00000196684.2|Atp1a3|ENSMUSG00000040907.16|ATPase, Na+/K+ transporting, alpha 3 polypeptide	ENSMUST00000080882.11|Atp1a3|ENSMUSG00000040907.16|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm39_v1_chr19_+_12438125_12438147	3.40393	Sox2	ENSMUST00000081035.9|Mpeg1|ENSMUSG00000046805.11|macrophage expressed gene 1
mm39_v1_chr7_-_133943703_133943726	3.4035	Sox2	ENSMUST00000106129.9|D7Ertd443e|ENSMUSG00000030994.17|DNA segment, Chr 7, ERATO Doi 443, expressed
mm39_v1_chr9_-_72019053_72019103	3.40077	Sox2	ENSMUST00000183492.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184523.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000034755.13|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr17_+_35219941_35219963	3.40027	Sox2	ENSMUST00000087315.14|Vars|ENSMUSG00000007029.17|valyl-tRNA synthetase
mm39_v1_chr11_+_32483290_32483338	3.39973	Sox2	ENSMUST00000102821.4|Stk10|ENSMUSG00000020272.9|serine/threonine kinase 10
mm39_v1_chr19_+_47926086_47926151	3.39852	Sox2	ENSMUST00000238163.2|Cfap58|ENSMUSG00000046585.10|cilia and flagella associated protein 58	ENSMUST00000066308.9|Cfap58|ENSMUSG00000046585.10|cilia and flagella associated protein 58
mm39_v1_chr2_+_49341498_49341571	3.3979	Sox2	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr1_+_130793406_130793505	3.37719	Sox2	ENSMUST00000038829.7|Fcmr|ENSMUSG00000042474.7|Fc fragment of IgM receptor
mm39_v1_chr1_-_33853476_33853522	3.37663	Sox2	ENSMUST00000194656.6|Zfp451|ENSMUSG00000042197.14|zinc finger protein 451
mm39_v1_chr11_+_97554192_97554240	3.36784	Sox2	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr1_+_165616315_165616338	3.36573	Sox2	ENSMUST00000161559.3|Cd247|ENSMUSG00000005763.16|CD247 antigen
mm39_v1_chr2_+_148592272_148592316	3.36204	Sox2	ENSMUST00000109955.10|Cstl1|ENSMUSG00000055177.16|cystatin-like 1	ENSMUST00000109954.8|Cstl1|ENSMUSG00000055177.16|cystatin-like 1	ENSMUST00000109952.2|Cstl1|ENSMUSG00000055177.16|cystatin-like 1
mm39_v1_chr7_+_126832399_126832491	3.35551	Sox2	ENSMUST00000056232.7|Zfp553|ENSMUSG00000045598.11|zinc finger protein 553
mm39_v1_chr11_-_100986192_100986266	3.34278	Sox2	ENSMUST00000019447.15|Psmc3ip|ENSMUSG00000019303.15|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm39_v1_chr15_+_99600475_99600537	3.3397	Sox2	ENSMUST00000228984.2|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	ENSMUST00000229845.2|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr14_-_75829389_75829433	3.33435	Sox2	ENSMUST00000165569.3|Cby2|ENSMUSG00000034913.11|chibby family member 2	ENSMUST00000035243.5|Cby2|ENSMUSG00000034913.11|chibby family member 2
mm39_v1_chr2_-_7400997_7401052	3.32988	Sox2	ENSMUST00000137733.9|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr2_+_3714515_3714537	3.32233	Sox2	ENSMUST00000115053.9|Fam107b|ENSMUSG00000026655.16|family with sequence similarity 107, member B
mm39_v1_chr9_-_66032134_66032168	3.3149	Sox2	ENSMUST00000034946.15|Snx1|ENSMUSG00000032382.15|sorting nexin 1
mm39_v1_chr3_-_94343874_94343944	3.31344	Sox2	ENSMUST00000204913.3|Oaz3|ENSMUSG00000028141.13|ornithine decarboxylase antizyme 3	ENSMUST00000191506.8|Oaz3|ENSMUSG00000028141.13|ornithine decarboxylase antizyme 3	ENSMUST00000199678.4|Oaz3|ENSMUSG00000028141.13|ornithine decarboxylase antizyme 3
mm39_v1_chr1_-_135032972_135033014	3.31073	Sox2	ENSMUST00000044828.14|Lgr6|ENSMUSG00000042793.14|leucine-rich repeat-containing G protein-coupled receptor 6
mm39_v1_chr2_+_90575714_90575813	3.30995	Sox2	ENSMUST00000238890.2|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4	ENSMUST00000013759.6|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4
mm39_v1_chr6_-_23650205_23650271	3.30712	Sox2	ENSMUST00000115354.2|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr6_+_54658609_54658770	3.30542	Sox2	ENSMUST00000190641.7|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)	ENSMUST00000187701.2|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)
mm39_v1_chr1_+_159871943_159872024	3.30304	Sox2	ENSMUST00000163892.8|4930523C07Rik|ENSMUSG00000090394.9|RIKEN cDNA 4930523C07 gene
mm39_v1_chr15_+_99599978_99600010	3.29961	Sox2	ENSMUST00000023759.6|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr4_-_82939330_82939372	3.28871	Sox2	ENSMUST00000071708.12|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chr17_+_47815998_47816009	3.28799	Sox2	ENSMUST00000183210.2|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr13_-_117162041_117162077	3.27973	Sox2	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr5_-_137869969_137869999	3.27857	Sox2	ENSMUST00000196162.5|Pilrb2|ENSMUSG00000066682.12|paired immunoglobin-like type 2 receptor beta 2
mm39_v1_chr2_+_31135813_31135913	3.27309	Sox2	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr5_+_147366953_147367027	3.26944	Sox2	ENSMUST00000031651.15|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chrX_+_92718695_92718767	3.26704	Sox2	ENSMUST00000045898.4|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr2_-_35322581_35322645	3.26692	Sox2	ENSMUST00000079424.11|Ggta1|ENSMUSG00000035778.18|glycoprotein galactosyltransferase alpha 1, 3
mm39_v1_chrX_-_104972938_104972988	3.25456	Sox2	ENSMUST00000198448.5|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000199233.5|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000134507.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000154866.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000128968.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000134381.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000150914.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr15_+_100052260_100052292	3.25009	Sox2	ENSMUST00000023768.14|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr16_-_89615225_89615244	3.24564	Sox2	ENSMUST00000164263.9|Tiam1|ENSMUSG00000002489.17|T cell lymphoma invasion and metastasis 1
mm39_v1_chr1_+_59555423_59555423	3.24282	Sox2	ENSMUST00000114243.8|Gm973|ENSMUSG00000047361.17|predicted gene 973
mm39_v1_chr8_-_106015682_106015725	3.24122	Sox2	ENSMUST00000212922.2|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene	ENSMUST00000212219.2|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene
mm39_v1_chr17_-_25492340_25492358	3.23684	Sox2	ENSMUST00000173084.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr2_+_160573178_160573230	3.23644	Sox2	ENSMUST00000103115.8|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1
mm39_v1_chr4_+_116078830_116078872	3.23411	Sox2	ENSMUST00000030464.14|Pik3r3|ENSMUSG00000028698.14|phosphoinositide-3-kinase regulatory subunit 3
mm39_v1_chr16_-_34334454_34334498	3.23316	Sox2	ENSMUST00000089655.12|Kalrn|ENSMUSG00000061751.17|kalirin, RhoGEF kinase
mm39_v1_chr9_-_75518387_75518464	3.22764	Sox2	ENSMUST00000215462.2|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000217233.2|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000215614.2|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chrX_+_92698469_92698587	3.22302	Sox2	ENSMUST00000113933.9|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr17_-_43978023_43978055	3.22034	Sox2	ENSMUST00000233442.2|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr5_-_72893941_72893953	3.21059	Sox2	ENSMUST00000169534.6|Txk|ENSMUSG00000054892.15|TXK tyrosine kinase
mm39_v1_chr2_-_152672535_152672600	3.20922	Sox2	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr7_+_45199297_45199323	3.20811	Sox2	ENSMUST00000211348.2|Plekha4|ENSMUSG00000040428.20|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4
mm39_v1_chr1_+_82817388_82817455	3.20487	Sox2	ENSMUST00000190052.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000063380.11|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000187899.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000186302.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000190046.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr10_+_94386714_94386765	3.20408	Sox2	ENSMUST00000148910.3|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3	ENSMUST00000117460.8|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr12_+_24881582_24881657	3.20185	Sox2	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr3_+_89122499_89122550	3.20103	Sox2	ENSMUST00000142051.8|Thbs3|ENSMUSG00000028047.12|thrombospondin 3	ENSMUST00000119084.2|Thbs3|ENSMUSG00000028047.12|thrombospondin 3
mm39_v1_chr6_-_99703344_99703375	3.19702	Sox2	ENSMUST00000008273.8|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000101120.11|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000203738.2|Prok2|ENSMUSG00000030069.16|prokineticin 2
mm39_v1_chr11_+_67477501_67477546	3.19605	Sox2	ENSMUST00000108680.2|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr16_+_16887991_16888079	3.19466	Sox2	ENSMUST00000232258.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr1_+_180468895_180468939	3.19345	Sox2	ENSMUST00000192725.6|Lin9|ENSMUSG00000058729.14|lin-9 homolog (C. elegans)
mm39_v1_chr4_-_63518986_63519006	3.19172	Sox2	ENSMUST00000210529.2|Gm11213|ENSMUSG00000084782.3|predicted gene 11213
mm39_v1_chr2_-_155953783_155953863	3.19098	Sox2	ENSMUST00000154889.8|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000079312.10|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000153634.8|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000133921.8|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000131377.8|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000183518.2|Gm28036|ENSMUSG00000098950.8|predicted gene, 28036	ENSMUST00000184265.8|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000109607.10|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000109608.9|Cpne1|ENSMUSG00000074643.13|copine I
mm39_v1_chr6_-_28397997_28398026	3.18505	Sox2	ENSMUST00000035930.11|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr8_+_40807344_40807344	3.18447	Sox2	ENSMUST00000136835.2|Micu3|ENSMUSG00000039478.16|mitochondrial calcium uptake family, member 3
mm39_v1_chr10_-_60055082_60055117	3.17891	Sox2	ENSMUST00000135158.9|Chst3|ENSMUSG00000057337.14|carbohydrate sulfotransferase 3
mm39_v1_chr11_-_8614497_8614594	3.17891	Sox2	ENSMUST00000020695.13|Tns3|ENSMUSG00000020422.15|tensin 3
mm39_v1_chr2_+_52747855_52747880	3.1785	Sox2	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr1_+_82817794_82817893	3.17514	Sox2	ENSMUST00000186043.2|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr6_-_23650297_23650308	3.17502	Sox2	ENSMUST00000063548.4|Rnf133|ENSMUSG00000051956.5|ring finger protein 133
mm39_v1_chr3_-_38538980_38539016	3.17115	Sox2	ENSMUST00000120875.8|Ankrd50|ENSMUSG00000044864.17|ankyrin repeat domain 50
mm39_v1_chr2_+_32515442_32515507	3.16447	Sox2	ENSMUST00000113277.8|Ak1|ENSMUSG00000026817.15|adenylate kinase 1	ENSMUST00000195721.6|Ak1|ENSMUSG00000026817.15|adenylate kinase 1
mm39_v1_chr5_+_65288418_65288501	3.16279	Sox2	ENSMUST00000101191.10|Klhl5|ENSMUSG00000054920.13|kelch-like 5	ENSMUST00000204348.3|Klhl5|ENSMUSG00000054920.13|kelch-like 5
mm39_v1_chr18_+_24087725_24087762	3.15795	Sox2	ENSMUST00000225682.2|Zfp397|ENSMUSG00000024276.8|zinc finger protein 397	ENSMUST00000060762.6|Zfp397|ENSMUSG00000024276.8|zinc finger protein 397
mm39_v1_chr5_+_66833434_66833600	3.15544	Sox2	ENSMUST00000031131.11|Uchl1|ENSMUSG00000029223.13|ubiquitin carboxy-terminal hydrolase L1
mm39_v1_chr13_-_13568106_13568209	3.14657	Sox2	ENSMUST00000021738.10|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B	ENSMUST00000220628.2|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B
mm39_v1_chr3_+_89122477_89122489	3.14605	Sox2	ENSMUST00000029682.11|Thbs3|ENSMUSG00000028047.12|thrombospondin 3
mm39_v1_chr17_+_72076728_72076738	3.14327	Sox2	ENSMUST00000230305.2|Clip4|ENSMUSG00000024059.11|CAP-GLY domain containing linker protein family, member 4
mm39_v1_chr2_-_121637469_121637499	3.14071	Sox2	ENSMUST00000110592.2|Frmd5|ENSMUSG00000027238.18|FERM domain containing 5
mm39_v1_chr7_-_29204812_29204898	3.14032	Sox2	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr16_+_16964801_16964849	3.13703	Sox2	ENSMUST00000232479.2|Ydjc|ENSMUSG00000041774.17|YdjC homolog (bacterial)	ENSMUST00000232344.2|Ydjc|ENSMUSG00000041774.17|YdjC homolog (bacterial)	ENSMUST00000069064.7|Ydjc|ENSMUSG00000041774.17|YdjC homolog (bacterial)
mm39_v1_chr17_-_25492832_25492888	3.13563	Sox2	ENSMUST00000172868.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000172618.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr7_+_99184858_99184981	3.13303	Sox2	ENSMUST00000032995.15|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000162404.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr16_+_16888084_16888102	3.13222	Sox2	ENSMUST00000231514.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr9_-_109946447_109946513	3.13181	Sox2	ENSMUST00000111991.9|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000197182.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000198425.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000199529.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000196171.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm39_v1_chr2_-_126517458_126517512	3.12438	Sox2	ENSMUST00000103227.8|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1	ENSMUST00000110425.9|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1	ENSMUST00000089745.11|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1
mm39_v1_chr6_-_56339341_56339504	3.12337	Sox2	ENSMUST00000164037.3|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C	ENSMUST00000044505.14|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C	ENSMUST00000114327.9|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C
mm39_v1_chr1_-_64161415_64161455	3.11131	Sox2	ENSMUST00000135075.2|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr6_+_86381318_86381362	3.10876	Sox2	ENSMUST00000113713.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr12_-_16850674_16850711	3.10827	Sox2	ENSMUST00000162112.8|Greb1|ENSMUSG00000036523.17|gene regulated by estrogen in breast cancer protein
mm39_v1_chr15_+_79578141_79578186	3.10041	Sox2	ENSMUST00000230898.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1	ENSMUST00000229046.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1
mm39_v1_chr17_-_35984409_35984591	3.09982	Sox2	ENSMUST00000162266.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000160734.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000159852.2|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4	ENSMUST00000160039.8|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4
mm39_v1_chr15_-_98816012_98816112	3.09623	Sox2	ENSMUST00000023736.10|Lmbr1l|ENSMUSG00000022999.16|limb region 1 like
mm39_v1_chr18_+_80090069_80090120	3.08878	Sox2	ENSMUST00000070219.9|Pard6g|ENSMUSG00000056214.10|par-6 family cell polarity regulator gamma
mm39_v1_chr7_+_24181416_24181501	3.08773	Sox2	ENSMUST00000068023.8|Cadm4|ENSMUSG00000054793.9|cell adhesion molecule 4
mm39_v1_chr10_+_57527073_57527081	3.087	Sox2	ENSMUST00000066028.13|Pkib|ENSMUSG00000019876.16|protein kinase inhibitor beta, cAMP dependent, testis specific
mm39_v1_chr2_-_162929732_162929775	3.07858	Sox2	ENSMUST00000094653.6|Gtsf1l|ENSMUSG00000070708.6|gametocyte specific factor 1-like
mm39_v1_chr11_+_60590584_60590671	3.07484	Sox2	ENSMUST00000108719.4|Llgl1|ENSMUSG00000020536.13|LLGL1 scribble cell polarity complex component
mm39_v1_chr7_+_30450896_30450987	3.07212	Sox2	ENSMUST00000182229.8|Sbsn|ENSMUSG00000046056.16|suprabasin	ENSMUST00000080518.14|Sbsn|ENSMUSG00000046056.16|suprabasin	ENSMUST00000182227.8|Sbsn|ENSMUSG00000046056.16|suprabasin	ENSMUST00000182721.8|Sbsn|ENSMUSG00000046056.16|suprabasin
mm39_v1_chr12_+_24880878_24880913	3.07074	Sox2	ENSMUST00000222198.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr17_-_56019571_56019631	3.06891	Sox2	ENSMUST00000086876.7|Pot1b|ENSMUSG00000024174.10|protection of telomeres 1B	ENSMUST00000233557.2|Pot1b|ENSMUSG00000024174.10|protection of telomeres 1B	ENSMUST00000233972.2|Pot1b|ENSMUSG00000024174.10|protection of telomeres 1B
mm39_v1_chr15_+_41694317_41694397	3.06489	Sox2	ENSMUST00000166917.3|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230127.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000230131.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr1_-_55066629_55066645	3.06397	Sox2	ENSMUST00000027127.14|Sf3b1|ENSMUSG00000025982.14|splicing factor 3b, subunit 1
mm39_v1_chr11_-_69712970_69713006	3.05971	Sox2	ENSMUST00000045771.7|Spem1|ENSMUSG00000041165.7|sperm maturation 1
mm39_v1_chr5_+_93416091_93416173	3.05748	Sox2	ENSMUST00000121127.2|Ccng2|ENSMUSG00000029385.15|cyclin G2
mm39_v1_chr3_-_20329823_20329897	3.05026	Sox2	ENSMUST00000011607.6|Cpb1|ENSMUSG00000011463.6|carboxypeptidase B1 (tissue)
mm39_v1_chr1_+_87332638_87332686	3.04124	Sox2	ENSMUST00000173152.2|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2	ENSMUST00000173663.2|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr8_+_95703728_95703751	3.04077	Sox2	ENSMUST00000179619.9|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr17_-_35246886_35246992	3.03907	Sox2	ENSMUST00000040151.9|Sapcd1|ENSMUSG00000036185.10|suppressor APC domain containing 1
mm39_v1_chr14_-_70945434_70945486	3.03862	Sox2	ENSMUST00000228346.2|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr7_-_6334239_6334290	3.03727	Sox2	ENSMUST00000127658.2|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583	ENSMUST00000062765.14|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583
mm39_v1_chr13_-_48746836_48746881	3.02807	Sox2	ENSMUST00000238995.2|Ptpdc1|ENSMUSG00000038042.12|protein tyrosine phosphatase domain containing 1
mm39_v1_chr1_+_191058109_191058181	3.02462	Sox2	ENSMUST00000027940.6|Pacc1|ENSMUSG00000026627.8|proton activated chloride channel 1
mm39_v1_chr2_-_155953874_155953898	3.02078	Sox2	ENSMUST00000059647.12|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000109604.9|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000142960.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000138068.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000136296.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000128499.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12
mm39_v1_chr5_-_148865429_148865480	3.01817	Sox2	ENSMUST00000149169.3|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1	ENSMUST00000047257.15|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1
mm39_v1_chr2_-_39080701_39080762	3.0166	Sox2	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr13_+_49495025_49495099	3.01251	Sox2	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr9_-_83028523_83028642	3.00427	Sox2	ENSMUST00000187193.7|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3	ENSMUST00000185315.7|Hmgn3|ENSMUSG00000066456.15|high mobility group nucleosomal binding domain 3
mm39_v1_chr4_+_116078787_116078815	3.00406	Sox2	ENSMUST00000147292.8|Pik3r3|ENSMUSG00000028698.14|phosphoinositide-3-kinase regulatory subunit 3
mm39_v1_chr9_+_108867633_108867714	2.99395	Sox2	ENSMUST00000112059.10|Shisa5|ENSMUSG00000025647.17|shisa family member 5	ENSMUST00000026737.12|Shisa5|ENSMUSG00000025647.17|shisa family member 5
mm39_v1_chr18_+_12874390_12874413	2.98971	Sox2	ENSMUST00000121018.8|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	ENSMUST00000119108.8|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	ENSMUST00000186263.2|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	ENSMUST00000191078.7|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm39_v1_chr19_+_40819682_40819757	2.98926	Sox2	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chrX_-_104973003_104973014	2.98884	Sox2	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr7_-_28071658_28071796	2.98841	Sox2	ENSMUST00000094644.11|Plekhg2|ENSMUSG00000037552.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm39_v1_chr8_-_87472562_87472682	2.98668	Sox2	ENSMUST00000045296.6|Siah1a|ENSMUSG00000036840.6|siah E3 ubiquitin protein ligase 1A
mm39_v1_chr2_+_155907100_155907204	2.98579	Sox2	ENSMUST00000038860.12|Spag4|ENSMUSG00000038180.12|sperm associated antigen 4
mm39_v1_chr11_-_113600838_113600849	2.98517	Sox2	ENSMUST00000018871.8|Cpsf4l|ENSMUSG00000018727.20|cleavage and polyadenylation specific factor 4-like
mm39_v1_chr5_+_34140877_34140892	2.98231	Sox2	ENSMUST00000114382.2|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr10_+_26105605_26105661	2.98163	Sox2	ENSMUST00000218301.2|Samd3|ENSMUSG00000051354.15|sterile alpha motif domain containing 3	ENSMUST00000164660.8|Samd3|ENSMUSG00000051354.15|sterile alpha motif domain containing 3	ENSMUST00000060716.6|Samd3|ENSMUSG00000051354.15|sterile alpha motif domain containing 3
mm39_v1_chr6_-_86710250_86710377	2.98156	Sox2	ENSMUST00000001185.14|Gmcl1|ENSMUSG00000001157.14|germ cell-less, spermatogenesis associated 1
mm39_v1_chr2_-_34848148_34848186	2.97678	Sox2	ENSMUST00000201690.2|Traf1|ENSMUSG00000026875.15|TNF receptor-associated factor 1	ENSMUST00000172159.8|Traf1|ENSMUSG00000026875.15|TNF receptor-associated factor 1
mm39_v1_chr6_+_97968737_97968882	2.97559	Sox2	ENSMUST00000043628.13|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000203938.2|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr2_+_32041083_32041274	2.97459	Sox2	ENSMUST00000036691.14|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B	ENSMUST00000069817.15|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B
mm39_v1_chr12_-_112792971_112793047	2.96295	Sox2	ENSMUST00000062092.7|Cdca4|ENSMUSG00000047832.10|cell division cycle associated 4	ENSMUST00000220899.2|Cdca4|ENSMUSG00000047832.10|cell division cycle associated 4
mm39_v1_chr16_-_89940652_89940662	2.96132	Sox2	ENSMUST00000114124.9|Tiam1|ENSMUSG00000002489.17|T cell lymphoma invasion and metastasis 1
mm39_v1_chr10_+_74802996_74803035	2.95946	Sox2	ENSMUST00000037813.5|Gnaz|ENSMUSG00000040009.7|guanine nucleotide binding protein, alpha z subunit
mm39_v1_chr2_-_153079828_153079854	2.95906	Sox2	ENSMUST00000109795.2|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr11_+_93776965_93777045	2.95529	Sox2	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr12_+_24758968_24759028	2.95086	Sox2	ENSMUST00000154588.2|Rrm2|ENSMUSG00000020649.12|ribonucleotide reductase M2
mm39_v1_chr9_-_37058590_37058703	2.94809	Sox2	ENSMUST00000080754.12|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2	ENSMUST00000188057.7|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2	ENSMUST00000039674.13|Pknox2|ENSMUSG00000035934.17|Pbx/knotted 1 homeobox 2
mm39_v1_chr5_-_138169476_138169508	2.9476	Sox2	ENSMUST00000147920.2|Mcm7|ENSMUSG00000029730.17|minichromosome maintenance complex component 7
mm39_v1_chr1_+_66403774_66403822	2.94695	Sox2	ENSMUST00000077355.12|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2	ENSMUST00000114012.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr9_-_72019109_72019191	2.94092	Sox2	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr18_-_46444941_46444995	2.93652	Sox2	ENSMUST00000072835.7|Ccdc112|ENSMUSG00000071855.6|coiled-coil domain containing 112
mm39_v1_chr11_-_60804601_60804642	2.93217	Sox2	ENSMUST00000019075.4|Natd1|ENSMUSG00000018931.4|N-acetyltransferase domain containing 1
mm39_v1_chr1_-_156936197_156936250	2.92434	Sox2	ENSMUST00000187546.7|Tex35|ENSMUSG00000026592.14|testis expressed 35	ENSMUST00000118207.8|Tex35|ENSMUSG00000026592.14|testis expressed 35	ENSMUST00000027884.13|Tex35|ENSMUSG00000026592.14|testis expressed 35	ENSMUST00000121911.8|Tex35|ENSMUSG00000026592.14|testis expressed 35
mm39_v1_chr11_+_69471219_69471248	2.92307	Sox2	ENSMUST00000108657.4|Trp53|ENSMUSG00000059552.14|transformation related protein 53
mm39_v1_chr9_-_14956704_14956798	2.91726	Sox2	ENSMUST00000164273.9|Panx1|ENSMUSG00000031934.15|pannexin 1
mm39_v1_chr11_-_116058961_116059030	2.91683	Sox2	ENSMUST00000139020.2|Fbf1|ENSMUSG00000020776.19|Fas (TNFRSF6) binding factor 1	ENSMUST00000103031.8|Fbf1|ENSMUSG00000020776.19|Fas (TNFRSF6) binding factor 1	ENSMUST00000124828.8|Fbf1|ENSMUSG00000020776.19|Fas (TNFRSF6) binding factor 1
mm39_v1_chr17_+_35219998_35220073	2.90972	Sox2	ENSMUST00000173584.8|Vars|ENSMUSG00000007029.17|valyl-tRNA synthetase
mm39_v1_chr10_+_111919250_111919276	2.90007	Sox2	ENSMUST00000148897.8|Glipr1l2|ENSMUSG00000020214.11|GLI pathogenesis-related 1 like 2	ENSMUST00000020434.4|Glipr1l2|ENSMUSG00000020214.11|GLI pathogenesis-related 1 like 2
mm39_v1_chr18_+_37617848_37617848	2.89944	Sox2	ENSMUST00000053856.6|Pcdhb17|ENSMUSG00000046387.6|protocadherin beta 17
mm39_v1_chr17_-_43978056_43978105	2.89698	Sox2	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr7_-_119744509_119744515	2.89526	Sox2	ENSMUST00000208874.2|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2	ENSMUST00000033207.6|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2
mm39_v1_chr5_-_137834470_137834543	2.88529	Sox2	ENSMUST00000110980.2|Pilra|ENSMUSG00000046245.14|paired immunoglobin-like type 2 receptor alpha	ENSMUST00000058897.11|Pilra|ENSMUSG00000046245.14|paired immunoglobin-like type 2 receptor alpha	ENSMUST00000199028.2|Pilra|ENSMUSG00000046245.14|paired immunoglobin-like type 2 receptor alpha
mm39_v1_chr3_+_102965910_102966059	2.88247	Sox2	ENSMUST00000199367.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000199049.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000197678.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr18_+_82493237_82493281	2.87867	Sox2	ENSMUST00000091789.11|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000114676.8|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr2_-_148717543_148717612	2.87512	Sox2	ENSMUST00000144845.2|Cst3|ENSMUSG00000027447.7|cystatin C
mm39_v1_chr11_-_54678433_54678531	2.87451	Sox2	ENSMUST00000153209.8|Cdc42se2|ENSMUSG00000052298.13|CDC42 small effector 2	ENSMUST00000064104.13|Cdc42se2|ENSMUSG00000052298.13|CDC42 small effector 2
mm39_v1_chr11_+_87473027_87473041	2.86992	Sox2	ENSMUST00000133202.3|Septin4|ENSMUSG00000020486.20|septin 4
mm39_v1_chr4_+_34550918_34550945	2.86861	Sox2	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
mm39_v1_chr16_+_34470290_34470314	2.86557	Sox2	ENSMUST00000148562.8|Ropn1|ENSMUSG00000022832.12|ropporin, rhophilin associated protein 1
mm39_v1_chr15_-_98769056_98769085	2.86042	Sox2	ENSMUST00000178486.9|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D	ENSMUST00000023741.16|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D
mm39_v1_chr16_-_31133622_31133626	2.84165	Sox2	ENSMUST00000115230.2|Apod|ENSMUSG00000022548.15|apolipoprotein D	ENSMUST00000130560.8|Apod|ENSMUSG00000022548.15|apolipoprotein D
mm39_v1_chr12_-_111679618_111679691	2.83701	Sox2	ENSMUST00000054636.7|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5
mm39_v1_chr4_+_32238712_32238804	2.83654	Sox2	ENSMUST00000108180.9|Bach2|ENSMUSG00000040270.17|BTB and CNC homology, basic leucine zipper transcription factor 2
mm39_v1_chr11_-_70213348_70213454	2.82872	Sox2	ENSMUST00000019051.3|Alox12e|ENSMUSG00000018907.11|arachidonate lipoxygenase, epidermal
mm39_v1_chr10_-_8394546_8394616	2.82541	Sox2	ENSMUST00000061601.9|Ust|ENSMUSG00000047712.9|uronyl-2-sulfotransferase
mm39_v1_chr6_-_115815373_115815373	2.81077	Sox2	ENSMUST00000032468.12|Efcab12|ENSMUSG00000030321.16|EF-hand calcium binding domain 12	ENSMUST00000184428.6|Efcab12|ENSMUSG00000030321.16|EF-hand calcium binding domain 12
mm39_v1_chr14_+_53921052_53921104	2.80663	Sox2	ENSMUST00000103663.6|Trav4-4-dv10|ENSMUSG00000096096.4|T cell receptor alpha variable 4-4-DV10
mm39_v1_chr13_-_49024583_49024642	2.80379	Sox2	ENSMUST00000035540.9|Phf2|ENSMUSG00000038025.9|PHD finger protein 2
mm39_v1_chr17_-_25492508_25492531	2.7996	Sox2	ENSMUST00000174031.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr3_+_102965601_102965684	2.79829	Sox2	ENSMUST00000029445.13|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000200069.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr4_+_102278715_102278770	2.79698	Sox2	ENSMUST00000106904.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr1_-_4479445_4479513	2.79349	Sox2	ENSMUST00000208660.2|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr13_+_52737473_52737485	2.79137	Sox2	ENSMUST00000118756.8|Syk|ENSMUSG00000021457.15|spleen tyrosine kinase
mm39_v1_chr9_+_108270020_108270042	2.79084	Sox2	ENSMUST00000035234.6|1700102P08Rik|ENSMUSG00000032611.10|RIKEN cDNA 1700102P08 gene
mm39_v1_chr6_-_88851579_88851778	2.79063	Sox2	ENSMUST00000061262.11|Podxl2|ENSMUSG00000033152.14|podocalyxin-like 2	ENSMUST00000140455.8|Podxl2|ENSMUSG00000033152.14|podocalyxin-like 2	ENSMUST00000145780.2|Podxl2|ENSMUSG00000033152.14|podocalyxin-like 2
mm39_v1_chr14_-_67106037_67106137	2.79056	Sox2	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr1_-_181841969_181842044	2.7902	Sox2	ENSMUST00000193074.6|Enah|ENSMUSG00000022995.17|ENAH actin regulator
mm39_v1_chr14_-_32110312_32110353	2.78525	Sox2	ENSMUST00000100723.4|1700024G13Rik|ENSMUSG00000072473.5|RIKEN cDNA 1700024G13 gene
mm39_v1_chr4_+_120389415_120389462	2.78314	Sox2	ENSMUST00000062990.4|Slfnl1|ENSMUSG00000047518.4|schlafen like 1
mm39_v1_chr14_+_61375893_61375944	2.78179	Sox2	ENSMUST00000089394.10|Sacs|ENSMUSG00000048279.20|sacsin
mm39_v1_chr15_-_79326311_79326337	2.78102	Sox2	ENSMUST00000230942.2|Csnk1e|ENSMUSG00000022433.22|casein kinase 1, epsilon
mm39_v1_chr1_+_9868332_9868451	2.78005	Sox2	ENSMUST00000166384.8|Sgk3|ENSMUSG00000025915.15|serum/glucocorticoid regulated kinase 3	ENSMUST00000168907.8|Sgk3|ENSMUSG00000025915.15|serum/glucocorticoid regulated kinase 3
mm39_v1_chr15_+_99600149_99600196	2.77523	Sox2	ENSMUST00000229236.2|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr10_-_84369831_84369926	2.75644	Sox2	ENSMUST00000167671.2|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4	ENSMUST00000053871.5|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4
mm39_v1_chr17_-_57394718_57394782	2.75565	Sox2	ENSMUST00000071135.6|Tubb4a|ENSMUSG00000062591.6|tubulin, beta 4A class IVA
mm39_v1_chr2_+_31840151_31840293	2.754	Sox2	ENSMUST00000001920.13|Aif1l|ENSMUSG00000001864.14|allograft inflammatory factor 1-like	ENSMUST00000151276.3|Aif1l|ENSMUSG00000001864.14|allograft inflammatory factor 1-like
mm39_v1_chr16_-_10608766_10608783	2.75175	Sox2	ENSMUST00000050864.7|Prm3|ENSMUSG00000050058.7|protamine 3
mm39_v1_chr3_+_88528581_88528599	2.75127	Sox2	ENSMUST00000107510.10|Arhgef2|ENSMUSG00000028059.17|rho/rac guanine nucleotide exchange factor (GEF) 2
mm39_v1_chr5_-_124490296_124490364	2.7495	Sox2	ENSMUST00000111472.6|Cdk2ap1|ENSMUSG00000029394.12|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm39_v1_chr6_-_39396691_39396735	2.74906	Sox2	ENSMUST00000146785.8|Mkrn1|ENSMUSG00000029922.16|makorin, ring finger protein, 1	ENSMUST00000114823.8|Mkrn1|ENSMUSG00000029922.16|makorin, ring finger protein, 1
mm39_v1_chr18_+_37888770_37888819	2.73929	Sox2	ENSMUST00000061279.10|Pcdhga11|ENSMUSG00000102742.2|protocadherin gamma subfamily A, 11
mm39_v1_chr5_+_108213608_108213634	2.733	Sox2	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr1_+_135768409_135768439	2.72933	Sox2	ENSMUST00000189826.7|Tnnt2|ENSMUSG00000026414.14|troponin T2, cardiac
mm39_v1_chr10_+_43455157_43455174	2.7244	Sox2	ENSMUST00000058714.10|Cd24a|ENSMUSG00000047139.10|CD24a antigen
mm39_v1_chr6_+_51409643_51409654	2.72387	Sox2	ENSMUST00000005103.12|Nfe2l3|ENSMUSG00000029832.17|nuclear factor, erythroid derived 2, like 3
mm39_v1_chr12_-_34578842_34578903	2.72077	Sox2	ENSMUST00000110819.4|Hdac9|ENSMUSG00000004698.12|histone deacetylase 9
mm39_v1_chr12_+_33197776_33197819	2.71951	Sox2	ENSMUST00000125192.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1	ENSMUST00000136644.8|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr2_+_128809268_128809363	2.71844	Sox2	ENSMUST00000110320.9|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6	ENSMUST00000110319.3|Zc3h6|ENSMUSG00000042851.18|zinc finger CCCH type containing 6
mm39_v1_chr12_+_24758724_24758769	2.71796	Sox2	ENSMUST00000153058.8|Rrm2|ENSMUSG00000020649.12|ribonucleotide reductase M2
mm39_v1_chr4_+_109092459_109092459	2.7174	Sox2	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr4_+_132366298_132366430	2.70802	Sox2	ENSMUST00000135299.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000020197.14|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000180250.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000081726.13|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000079157.11|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3
mm39_v1_chr14_-_56809287_56809317	2.70545	Sox2	ENSMUST00000065302.8|Cenpj|ENSMUSG00000064128.9|centromere protein J
mm39_v1_chr10_+_17672004_17672088	2.70452	Sox2	ENSMUST00000037964.7|Txlnb|ENSMUSG00000039891.7|taxilin beta
mm39_v1_chr3_-_146357059_146357081	2.7028	Sox2	ENSMUST00000149825.2|4930503B20Rik|ENSMUSG00000090202.2|RIKEN cDNA 4930503B20 gene	ENSMUST00000049703.6|4930503B20Rik|ENSMUSG00000090202.2|RIKEN cDNA 4930503B20 gene
mm39_v1_chr3_+_5815863_5815866	2.69523	Sox2	ENSMUST00000192045.2|Gm8797|ENSMUSG00000103034.2|predicted pseudogene 8797
mm39_v1_chr19_+_5790918_5790937	2.69519	Sox2	ENSMUST00000081496.6|Ltbp3|ENSMUSG00000024940.12|latent transforming growth factor beta binding protein 3
mm39_v1_chr2_-_152793376_152793460	2.695	Sox2	ENSMUST00000123121.9|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr11_+_61967821_61967927	2.6915	Sox2	ENSMUST00000092415.9|Specc1|ENSMUSG00000042331.14|sperm antigen with calponin homology and coiled-coil domains 1	ENSMUST00000201015.4|Specc1|ENSMUSG00000042331.14|sperm antigen with calponin homology and coiled-coil domains 1	ENSMUST00000202744.4|Specc1|ENSMUSG00000042331.14|sperm antigen with calponin homology and coiled-coil domains 1	ENSMUST00000201723.4|Specc1|ENSMUSG00000042331.14|sperm antigen with calponin homology and coiled-coil domains 1	ENSMUST00000202179.2|Specc1|ENSMUSG00000042331.14|sperm antigen with calponin homology and coiled-coil domains 1
mm39_v1_chr7_+_73025243_73025299	2.68673	Sox2	ENSMUST00000119206.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000094312.12|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr7_-_143102792_143102862	2.68072	Sox2	ENSMUST00000072727.7|Nap1l4|ENSMUSG00000059119.10|nucleosome assembly protein 1-like 4	ENSMUST00000207948.2|Nap1l4|ENSMUSG00000059119.10|nucleosome assembly protein 1-like 4	ENSMUST00000208190.2|Nap1l4|ENSMUSG00000059119.10|nucleosome assembly protein 1-like 4
mm39_v1_chr17_-_34340918_34340962	2.67962	Sox2	ENSMUST00000151986.2|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr10_-_22607136_22607346	2.67739	Sox2	ENSMUST00000238910.2|ENSMUSG00000118528.2|ENSMUSG00000118528.2|novel protein	ENSMUST00000127698.8|Tbpl1|ENSMUSG00000071359.14|TATA box binding protein-like 1
mm39_v1_chr7_-_109559593_109559644	2.6664	Sox2	ENSMUST00000106722.2|Dennd5a|ENSMUSG00000035901.15|DENN/MADD domain containing 5A
mm39_v1_chr2_-_148717496_148717536	2.66207	Sox2	ENSMUST00000028938.7|Cst3|ENSMUSG00000027447.7|cystatin C
mm39_v1_chr3_+_65435878_65435892	2.65806	Sox2	ENSMUST00000130705.2|Tiparp|ENSMUSG00000034640.10|TCDD-inducible poly(ADP-ribose) polymerase
mm39_v1_chr4_+_109272828_109272846	2.65693	Sox2	ENSMUST00000106618.8|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A
mm39_v1_chr13_+_65065220_65065279	2.65095	Sox2	ENSMUST00000070216.9|Spata31|ENSMUSG00000056223.9|spermatogenesis associated 31	ENSMUST00000221202.2|Spata31|ENSMUSG00000056223.9|spermatogenesis associated 31
mm39_v1_chr17_+_28749808_28749853	2.65058	Sox2	ENSMUST00000233837.2|Armc12|ENSMUSG00000024223.4|armadillo repeat containing 12	ENSMUST00000025060.4|Armc12|ENSMUSG00000024223.4|armadillo repeat containing 12
mm39_v1_chr7_-_120581535_120581556	2.64774	Sox2	ENSMUST00000033169.9|Cdr2|ENSMUSG00000030878.12|cerebellar degeneration-related 2
mm39_v1_chr13_+_51254852_51254971	2.64715	Sox2	ENSMUST00000095797.6|Spin1|ENSMUSG00000021395.12|spindlin 1
mm39_v1_chr14_+_69266566_69266687	2.64686	Sox2	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr16_+_11223512_11223577	2.64651	Sox2	ENSMUST00000096273.9|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr10_+_66932235_66932313	2.64292	Sox2	ENSMUST00000174317.8|Jmjd1c|ENSMUSG00000037876.18|jumonji domain containing 1C
mm39_v1_chr7_-_109559671_109559702	2.64014	Sox2	ENSMUST00000080437.13|Dennd5a|ENSMUSG00000035901.15|DENN/MADD domain containing 5A
mm39_v1_chr2_-_77110933_77110991	2.63308	Sox2	ENSMUST00000102659.2|Sestd1|ENSMUSG00000042272.18|SEC14 and spectrin domains 1
mm39_v1_chr8_-_70573465_70573523	2.62919	Sox2	ENSMUST00000002412.9|Ncan|ENSMUSG00000002341.9|neurocan
mm39_v1_chr9_-_103638985_103639015	2.62423	Sox2	ENSMUST00000189066.2|Tmem108|ENSMUSG00000042757.17|transmembrane protein 108
mm39_v1_chr8_+_107141948_107142028	2.61833	Sox2	ENSMUST00000034382.8|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90	ENSMUST00000212606.2|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90
mm39_v1_chr1_-_36597430_36597446	2.61739	Sox2	ENSMUST00000191677.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	ENSMUST00000114991.8|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm39_v1_chr19_-_7218363_7218437	2.61707	Sox2	ENSMUST00000236769.2|Naa40|ENSMUSG00000024764.11|N(alpha)-acetyltransferase 40, NatD catalytic subunit
mm39_v1_chr2_+_14393127_14393218	2.61243	Sox2	ENSMUST00000114731.8|Slc39a12|ENSMUSG00000036949.17|solute carrier family 39 (zinc transporter), member 12	ENSMUST00000082290.8|Slc39a12|ENSMUSG00000036949.17|solute carrier family 39 (zinc transporter), member 12
mm39_v1_chr17_-_25973288_25973356	2.60165	Sox2	ENSMUST00000075884.8|Msln|ENSMUSG00000063011.8|mesothelin	ENSMUST00000238120.2|Msln|ENSMUSG00000063011.8|mesothelin	ENSMUST00000236137.2|Msln|ENSMUSG00000063011.8|mesothelin	ENSMUST00000237359.2|Msln|ENSMUSG00000063011.8|mesothelin
mm39_v1_chr8_-_106016097_106016173	2.59965	Sox2	ENSMUST00000171788.8|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene
mm39_v1_chr18_+_82932747_82932788	2.59908	Sox2	ENSMUST00000071233.7|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr8_+_70354828_70354844	2.59725	Sox2	ENSMUST00000050373.7|Tssk6|ENSMUSG00000047654.7|testis-specific serine kinase 6
mm39_v1_chr10_-_39039790_39039790	2.59714	Sox2	ENSMUST00000076713.6|Ccn6|ENSMUSG00000062074.8|cellular communication network factor 6
mm39_v1_chr8_+_95537074_95537091	2.59465	Sox2	ENSMUST00000034232.3|Ccl17|ENSMUSG00000031780.3|chemokine (C-C motif) ligand 17
mm39_v1_chr18_+_69633741_69634029	2.5946	Sox2	ENSMUST00000207214.2|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201094.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000200703.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202765.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr8_+_34222266_34222367	2.58851	Sox2	ENSMUST00000190675.2|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)	ENSMUST00000171010.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr10_-_89093441_89093484	2.58134	Sox2	ENSMUST00000182341.8|Ano4|ENSMUSG00000035189.18|anoctamin 4	ENSMUST00000182613.8|Ano4|ENSMUSG00000035189.18|anoctamin 4
mm39_v1_chr8_-_86091946_86091963	2.57961	Sox2	ENSMUST00000034133.14|Mylk3|ENSMUSG00000031698.15|myosin light chain kinase 3
mm39_v1_chr9_-_109946398_109946414	2.57775	Sox2	ENSMUST00000200066.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm39_v1_chr9_+_110592709_110592789	2.5745	Sox2	ENSMUST00000079784.12|Myl3|ENSMUSG00000059741.14|myosin, light polypeptide 3
mm39_v1_chr1_-_190897012_190897015	2.5718	Sox2	ENSMUST00000171798.2|Fam71a|ENSMUSG00000091017.2|family with sequence similarity 71, member A
mm39_v1_chr2_+_11647610_11647623	2.56203	Sox2	ENSMUST00000028111.6|Il2ra|ENSMUSG00000026770.6|interleukin 2 receptor, alpha chain
mm39_v1_chr7_-_80475722_80475770	2.56067	Sox2	ENSMUST00000205304.2|Iqgap1|ENSMUSG00000030536.11|IQ motif containing GTPase activating protein 1
mm39_v1_chr11_+_16901370_16901418	2.55851	Sox2	ENSMUST00000109635.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48	ENSMUST00000061327.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48
mm39_v1_chr2_-_151815759_151815886	2.5579	Sox2	ENSMUST00000109865.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A	ENSMUST00000109864.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr10_+_80003612_80003680	2.55495	Sox2	ENSMUST00000105365.9|Cirbp|ENSMUSG00000045193.14|cold inducible RNA binding protein
mm39_v1_chr7_-_133203838_133203894	2.55194	Sox2	ENSMUST00000033275.4|Tex36|ENSMUSG00000030976.4|testis expressed 36
mm39_v1_chr15_-_98155173_98155193	2.551	Sox2	ENSMUST00000060855.7|H1f7|ENSMUSG00000048077.7|H1.7 linker histone
mm39_v1_chr5_+_138115165_138115303	2.54787	Sox2	ENSMUST00000062350.15|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110961.9|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000080732.10|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110960.9|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000142185.8|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000136425.2|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21	ENSMUST00000110959.2|Zscan21|ENSMUSG00000037017.16|zinc finger and SCAN domain containing 21
mm39_v1_chr2_-_126517383_126517429	2.54209	Sox2	ENSMUST00000103226.10|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1	ENSMUST00000110424.9|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1
mm39_v1_chr12_-_33142858_33142902	2.54187	Sox2	ENSMUST00000095774.3|Cdhr3|ENSMUSG00000035860.10|cadherin-related family member 3
mm39_v1_chr6_-_49240944_49240992	2.54162	Sox2	ENSMUST00000204189.3|Tra2a|ENSMUSG00000029817.12|transformer 2 alpha	ENSMUST00000031841.9|Tra2a|ENSMUSG00000029817.12|transformer 2 alpha
mm39_v1_chr17_+_31810693_31810729	2.53871	Sox2	ENSMUST00000236493.2|Pknox1|ENSMUSG00000006705.14|Pbx/knotted 1 homeobox	ENSMUST00000237038.2|Pknox1|ENSMUSG00000006705.14|Pbx/knotted 1 homeobox	ENSMUST00000237748.2|Pknox1|ENSMUSG00000006705.14|Pbx/knotted 1 homeobox	ENSMUST00000235255.2|Pknox1|ENSMUSG00000006705.14|Pbx/knotted 1 homeobox
mm39_v1_chrX_+_135723420_135723518	2.53461	Sox2	ENSMUST00000033800.13|Plp1|ENSMUSG00000031425.16|proteolipid protein (myelin) 1
mm39_v1_chr9_+_45341589_45341677	2.5331	Sox2	ENSMUST00000239471.2|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1	ENSMUST00000034592.11|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1	ENSMUST00000239429.2|Dscaml1|ENSMUSG00000032087.12|DS cell adhesion molecule like 1
mm39_v1_chr14_+_53859114_53859201	2.53035	Sox2	ENSMUST00000103657.6|Trav12-3|ENSMUSG00000095958.4|T cell receptor alpha variable 12-3
mm39_v1_chrX_-_134985958_134986004	2.52684	Sox2	ENSMUST00000138878.2|Nxf3|ENSMUSG00000057000.13|nuclear RNA export factor 3	ENSMUST00000080929.13|Nxf3|ENSMUSG00000057000.13|nuclear RNA export factor 3
mm39_v1_chr12_+_81678002_81678087	2.52576	Sox2	ENSMUST00000218362.2|Ttc9|ENSMUSG00000042734.7|tetratricopeptide repeat domain 9
mm39_v1_chr7_+_101619019_101619047	2.52553	Sox2	ENSMUST00000084852.13|Numa1|ENSMUSG00000066306.14|nuclear mitotic apparatus protein 1
mm39_v1_chr4_-_137157824_137157851	2.50831	Sox2	ENSMUST00000102522.5|Cela3b|ENSMUSG00000023433.9|chymotrypsin-like elastase family, member 3B
mm39_v1_chr11_-_98620200_98620261	2.4995	Sox2	ENSMUST00000126565.2|Med24|ENSMUSG00000017210.15|mediator complex subunit 24	ENSMUST00000100500.9|Med24|ENSMUSG00000017210.15|mediator complex subunit 24	ENSMUST00000017354.13|Med24|ENSMUSG00000017210.15|mediator complex subunit 24
mm39_v1_chr4_+_140737955_140738007	2.49455	Sox2	ENSMUST00000071977.9|Mfap2|ENSMUSG00000060572.18|microfibrillar-associated protein 2
mm39_v1_chr4_-_129015682_129015856	2.49281	Sox2	ENSMUST00000139450.8|Hpca|ENSMUSG00000028785.14|hippocalcin	ENSMUST00000125931.9|Hpca|ENSMUSG00000028785.14|hippocalcin	ENSMUST00000116444.10|Hpca|ENSMUSG00000028785.14|hippocalcin
mm39_v1_chrX_-_58211440_58211524	2.48932	Sox2	ENSMUST00000119306.2|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr2_-_121637505_121637568	2.48862	Sox2	ENSMUST00000138157.8|Frmd5|ENSMUSG00000027238.18|FERM domain containing 5
mm39_v1_chr5_-_137870001_137870030	2.48306	Sox2	ENSMUST00000164886.2|Pilrb2|ENSMUSG00000066682.12|paired immunoglobin-like type 2 receptor beta 2
mm39_v1_chr14_+_30741115_30741135	2.48113	Sox2	ENSMUST00000112094.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000144009.2|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr12_-_87283780_87283793	2.47614	Sox2	ENSMUST00000221768.2|Noxred1|ENSMUSG00000072919.5|NADP+ dependent oxidoreductase domain containing 1
mm39_v1_chr6_+_47221372_47221387	2.47434	Sox2	ENSMUST00000060839.8|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr9_+_18389653_18389675	2.47186	Sox2	ENSMUST00000213625.2|Mbd3l1|ENSMUSG00000038691.6|methyl-CpG binding domain protein 3-like 1	ENSMUST00000069218.5|Mbd3l1|ENSMUSG00000038691.6|methyl-CpG binding domain protein 3-like 1
mm39_v1_chr1_+_75522902_75522957	2.46243	Sox2	ENSMUST00000124341.8|Slc4a3|ENSMUSG00000006576.17|solute carrier family 4 (anion exchanger), member 3
mm39_v1_chr1_+_9671388_9671481	2.46239	Sox2	ENSMUST00000088666.4|Vxn|ENSMUSG00000067879.4|vexin
mm39_v1_chr16_+_16714333_16714462	2.45915	Sox2	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr17_-_33879224_33879268	2.45633	Sox2	ENSMUST00000130946.8|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M
mm39_v1_chr10_+_79832313_79832339	2.45492	Sox2	ENSMUST00000132517.8|Abca7|ENSMUSG00000035722.16|ATP-binding cassette, sub-family A (ABC1), member 7
mm39_v1_chr19_-_5711650_5711695	2.4542	Sox2	ENSMUST00000236006.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr8_-_71938598_71938624	2.452	Sox2	ENSMUST00000093450.6|Ano8|ENSMUSG00000034863.10|anoctamin 8	ENSMUST00000213382.2|Ano8|ENSMUSG00000034863.10|anoctamin 8
mm39_v1_chr4_-_123558516_123558598	2.44934	Sox2	ENSMUST00000147030.2|Macf1|ENSMUSG00000028649.22|microtubule-actin crosslinking factor 1
mm39_v1_chr4_+_57821050_57821100	2.44434	Sox2	ENSMUST00000238994.2|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr5_+_20112500_20112549	2.44309	Sox2	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr9_+_21279179_21279267	2.44302	Sox2	ENSMUST00000213518.2|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3	ENSMUST00000216892.2|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3
mm39_v1_chr12_-_111679344_111679366	2.43068	Sox2	ENSMUST00000160576.2|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5
mm39_v1_chr2_+_167774247_167774300	2.41763	Sox2	ENSMUST00000029053.8|Ptpn1|ENSMUSG00000027540.14|protein tyrosine phosphatase, non-receptor type 1
mm39_v1_chr15_-_88618391_88618444	2.41737	Sox2	ENSMUST00000109381.9|Brd1|ENSMUSG00000022387.18|bromodomain containing 1
mm39_v1_chr14_-_36628263_36628280	2.41675	Sox2	ENSMUST00000183007.2|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr7_+_138828391_138828476	2.41318	Sox2	ENSMUST00000093993.5|Pwwp2b|ENSMUSG00000060260.14|PWWP domain containing 2B	ENSMUST00000172136.9|Pwwp2b|ENSMUSG00000060260.14|PWWP domain containing 2B
mm39_v1_chr18_+_89195089_89195152	2.41093	Sox2	ENSMUST00000236644.2|Cd226|ENSMUSG00000034028.17|CD226 antigen	ENSMUST00000236828.2|Cd226|ENSMUSG00000034028.17|CD226 antigen
mm39_v1_chr11_+_67345895_67345982	2.40921	Sox2	ENSMUST00000108681.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr6_-_56339251_56339296	2.4071	Sox2	ENSMUST00000166102.8|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C
mm39_v1_chr4_+_114914880_114915008	2.40643	Sox2	ENSMUST00000161601.8|Tal1|ENSMUSG00000028717.13|T cell acute lymphocytic leukemia 1
mm39_v1_chr7_+_45135682_45135698	2.40281	Sox2	ENSMUST00000210813.2|Tulp2|ENSMUSG00000023467.19|tubby-like protein 2	ENSMUST00000107759.10|Tulp2|ENSMUSG00000023467.19|tubby-like protein 2
mm39_v1_chr4_+_109092610_109092610	2.39754	Sox2	ENSMUST00000106628.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr15_-_79626694_79626712	2.39064	Sox2	ENSMUST00000100439.10|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2
mm39_v1_chr16_-_95883588_95883680	2.38996	Sox2	ENSMUST00000099502.9|Brwd1|ENSMUSG00000022914.18|bromodomain and WD repeat domain containing 1	ENSMUST00000023631.17|Brwd1|ENSMUSG00000022914.18|bromodomain and WD repeat domain containing 1	ENSMUST00000232755.2|Brwd1|ENSMUSG00000022914.18|bromodomain and WD repeat domain containing 1
mm39_v1_chr1_-_163141230_163141246	2.38574	Sox2	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr9_+_21279299_21279332	2.38562	Sox2	ENSMUST00000214852.2|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3	ENSMUST00000115414.3|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3
mm39_v1_chr4_+_6191084_6191122	2.3821	Sox2	ENSMUST00000029907.6|Ubxn2b|ENSMUSG00000028243.6|UBX domain protein 2B
mm39_v1_chr11_+_106107752_106107805	2.38062	Sox2	ENSMUST00000021046.6|Ddx42|ENSMUSG00000020705.7|DEAD box helicase 42
mm39_v1_chr3_-_146487102_146487187	2.37748	Sox2	ENSMUST00000005164.12|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr2_+_25390762_25390796	2.37692	Sox2	ENSMUST00000015239.10|Fbxw5|ENSMUSG00000015095.13|F-box and WD-40 domain protein 5
mm39_v1_chr1_+_190769010_190769021	2.37599	Sox2	ENSMUST00000077889.8|Spata45|ENSMUSG00000057072.12|spermatogenesis associated 45
mm39_v1_chr5_+_52940391_52940458	2.37336	Sox2	ENSMUST00000031077.13|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4	ENSMUST00000113904.9|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4	ENSMUST00000199840.2|Zcchc4|ENSMUSG00000029179.15|zinc finger, CCHC domain containing 4
mm39_v1_chr11_-_55042529_55042538	2.36831	Sox2	ENSMUST00000020502.9|Slc36a3|ENSMUSG00000049491.16|solute carrier family 36 (proton/amino acid symporter), member 3	ENSMUST00000069816.6|Slc36a3|ENSMUSG00000049491.16|solute carrier family 36 (proton/amino acid symporter), member 3
mm39_v1_chr3_+_88439616_88439703	2.36649	Sox2	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr11_-_120489172_120489231	2.36627	Sox2	ENSMUST00000026125.3|Alyref|ENSMUSG00000025134.3|Aly/REF export factor
mm39_v1_chr8_+_66419809_66419848	2.36599	Sox2	ENSMUST00000072482.13|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr9_+_102597486_102597536	2.36495	Sox2	ENSMUST00000130602.2|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chr3_-_9898713_9898739	2.36385	Sox2	ENSMUST00000161949.8|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr5_+_33978035_33978173	2.36172	Sox2	ENSMUST00000075812.11|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000114397.9|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000155880.8|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2
mm39_v1_chr14_+_47885900_47885939	2.35965	Sox2	ENSMUST00000187839.8|Ktn1|ENSMUSG00000021843.18|kinectin 1
mm39_v1_chr14_-_78326435_78326471	2.3551	Sox2	ENSMUST00000118785.3|Fam216b|ENSMUSG00000045655.10|family with sequence similarity 216, member B	ENSMUST00000066437.5|Fam216b|ENSMUSG00000045655.10|family with sequence similarity 216, member B
mm39_v1_chr12_+_86725459_86725580	2.34871	Sox2	ENSMUST00000021681.4|Vash1|ENSMUSG00000021256.6|vasohibin 1
mm39_v1_chr14_-_52434863_52434923	2.34833	Sox2	ENSMUST00000046709.9|Supt16|ENSMUSG00000035726.9|SPT16, facilitates chromatin remodeling subunit
mm39_v1_chr9_+_3335135_3335161	2.34489	Sox2	ENSMUST00000212294.2|Alkbh8|ENSMUSG00000025899.15|alkB homolog 8, tRNA methyltransferase
mm39_v1_chr4_-_129590609_129590636	2.34239	Sox2	ENSMUST00000102588.10|Tmem39b|ENSMUSG00000053730.16|transmembrane protein 39b
mm39_v1_chr9_+_86349207_86349225	2.34238	Sox2	ENSMUST00000190957.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chr11_-_3599673_3599673	2.33904	Sox2	ENSMUST00000193809.2|Tug1|ENSMUSG00000056579.19|taurine upregulated gene 1
mm39_v1_chr15_+_99024394_99024522	2.33886	Sox2	ENSMUST00000063517.6|Spats2|ENSMUSG00000051934.6|spermatogenesis associated, serine-rich 2
mm39_v1_chrX_+_135723531_135723548	2.33762	Sox2	ENSMUST00000113085.2|Plp1|ENSMUSG00000031425.16|proteolipid protein (myelin) 1
mm39_v1_chr19_-_46321218_46321231	2.33728	Sox2	ENSMUST00000238062.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr2_-_118310116_118310192	2.33352	Sox2	ENSMUST00000110862.2|Srp14|ENSMUSG00000009549.15|signal recognition particle 14	ENSMUST00000009693.15|Srp14|ENSMUSG00000009549.15|signal recognition particle 14
mm39_v1_chr15_-_79626719_79626763	2.32908	Sox2	ENSMUST00000089311.11|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2	ENSMUST00000046259.14|Sun2|ENSMUSG00000042524.15|Sad1 and UNC84 domain containing 2
mm39_v1_chr9_-_22218934_22218990	2.32757	Sox2	ENSMUST00000086278.7|Zfp810|ENSMUSG00000066829.8|zinc finger protein 810	ENSMUST00000215202.2|Zfp810|ENSMUSG00000066829.8|zinc finger protein 810
mm39_v1_chr2_+_92015780_92015841	2.32603	Sox2	ENSMUST00000128781.9|Phf21a|ENSMUSG00000058318.16|PHD finger protein 21A	ENSMUST00000111291.9|Phf21a|ENSMUSG00000058318.16|PHD finger protein 21A
mm39_v1_chrX_+_152281200_152281223	2.32593	Sox2	ENSMUST00000060714.10|Ubqln2|ENSMUSG00000050148.10|ubiquilin 2
mm39_v1_chr14_-_55231998_55232083	2.32343	Sox2	ENSMUST00000227518.2|Myh7|ENSMUSG00000053093.17|myosin, heavy polypeptide 7, cardiac muscle, beta	ENSMUST00000226424.2|Myh7|ENSMUSG00000053093.17|myosin, heavy polypeptide 7, cardiac muscle, beta	ENSMUST00000153783.2|Myh7|ENSMUSG00000053093.17|myosin, heavy polypeptide 7, cardiac muscle, beta	ENSMUST00000102803.11|Myh7|ENSMUSG00000053093.17|myosin, heavy polypeptide 7, cardiac muscle, beta	ENSMUST00000168485.8|Myh7|ENSMUSG00000053093.17|myosin, heavy polypeptide 7, cardiac muscle, beta
mm39_v1_chr12_+_112978051_112978160	2.32057	Sox2	ENSMUST00000223502.2|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2	ENSMUST00000084891.5|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2	ENSMUST00000220541.2|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2
mm39_v1_chr2_+_163535925_163535978	2.31428	Sox2	ENSMUST00000109400.3|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma
mm39_v1_chr9_-_103639018_103639046	2.30916	Sox2	ENSMUST00000215136.2|Tmem108|ENSMUSG00000042757.17|transmembrane protein 108	ENSMUST00000189588.7|Tmem108|ENSMUSG00000042757.17|transmembrane protein 108
mm39_v1_chr9_+_21279161_21279178	2.30717	Sox2	ENSMUST00000067646.12|Ilf3|ENSMUSG00000032178.15|interleukin enhancer binding factor 3
mm39_v1_chr3_-_51468236_51468300	2.30126	Sox2	ENSMUST00000037141.9|Setd7|ENSMUSG00000037111.10|SET domain containing (lysine methyltransferase) 7
mm39_v1_chr13_+_64580128_64580247	2.29867	Sox2	ENSMUST00000021939.8|Cdk20|ENSMUSG00000021483.9|cyclin-dependent kinase 20
mm39_v1_chr5_-_142536720_142536865	2.29704	Sox2	ENSMUST00000129212.2|Radil|ENSMUSG00000029576.18|Ras association and DIL domains	ENSMUST00000110785.2|Radil|ENSMUSG00000029576.18|Ras association and DIL domains	ENSMUST00000063635.15|Radil|ENSMUSG00000029576.18|Ras association and DIL domains
mm39_v1_chrX_-_35755483_35755483	2.29484	Sox2	ENSMUST00000169499.2|Gm14569|ENSMUSG00000091556.9|predicted gene 14569
mm39_v1_chr9_+_120321557_120321578	2.29417	Sox2	ENSMUST00000007139.6|Eif1b|ENSMUSG00000006941.6|eukaryotic translation initiation factor 1B
mm39_v1_chr10_+_7543260_7543322	2.29128	Sox2	ENSMUST00000040135.9|Nup43|ENSMUSG00000040034.16|nucleoporin 43
mm39_v1_chr7_-_105131407_105131507	2.28425	Sox2	ENSMUST00000047040.4|Cavin3|ENSMUSG00000037060.4|caveolae associated 3
mm39_v1_chrX_+_157993303_157993360	2.28155	Sox2	ENSMUST00000112493.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr16_-_10613991_10614016	2.27756	Sox2	ENSMUST00000189593.2|Prm2|ENSMUSG00000038015.7|protamine 2
mm39_v1_chr13_-_9815350_9815405	2.27707	Sox2	ENSMUST00000110636.9|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000152725.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr5_-_105130522_105130584	2.27692	Sox2	ENSMUST00000031239.13|Abcg3|ENSMUSG00000029299.15|ATP binding cassette subfamily G member 3
mm39_v1_chr8_+_110432210_110432268	2.27197	Sox2	ENSMUST00000212192.2|Zfp821|ENSMUSG00000031728.11|zinc finger protein 821
mm39_v1_chr8_+_96404713_96404844	2.26285	Sox2	ENSMUST00000041318.14|Ndrg4|ENSMUSG00000036564.18|N-myc downstream regulated gene 4
mm39_v1_chr1_-_153363354_153363411	2.26148	Sox2	ENSMUST00000186380.7|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9	ENSMUST00000188345.2|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9	ENSMUST00000042141.12|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm39_v1_chr11_-_59397352_59397470	2.26039	Sox2	ENSMUST00000013262.15|Zkscan17|ENSMUSG00000020472.15|zinc finger with KRAB and SCAN domains 17	ENSMUST00000101150.9|Zkscan17|ENSMUSG00000020472.15|zinc finger with KRAB and SCAN domains 17
mm39_v1_chr3_-_143908111_143908157	2.25961	Sox2	ENSMUST00000121796.8|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr12_+_81678143_81678169	2.25924	Sox2	ENSMUST00000036116.6|Ttc9|ENSMUSG00000042734.7|tetratricopeptide repeat domain 9
mm39_v1_chr15_-_79281056_79281091	2.25813	Sox2	ENSMUST00000228472.2|Tmem184b|ENSMUSG00000009035.16|transmembrane protein 184b
mm39_v1_chr15_-_98380567_98380602	2.25741	Sox2	ENSMUST00000023726.5|Lalba|ENSMUSG00000022991.6|lactalbumin, alpha
mm39_v1_chr7_-_99477551_99477624	2.2508	Sox2	ENSMUST00000036331.7|Neu3|ENSMUSG00000035239.7|neuraminidase 3
mm39_v1_chr3_+_53371086_53371102	2.25006	Sox2	ENSMUST00000058577.5|Proser1|ENSMUSG00000049504.13|proline and serine rich 1
mm39_v1_chr14_+_53698556_53698556	2.24575	Sox2	ENSMUST00000181728.3|Trav7-4|ENSMUSG00000094766.4|T cell receptor alpha variable 7-4
mm39_v1_chr4_+_154954042_154954093	2.24527	Sox2	ENSMUST00000079269.14|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000163732.8|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000080559.13|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1
mm39_v1_chrX_-_59193003_59193060	2.2439	Sox2	ENSMUST00000033478.5|Mcf2|ENSMUSG00000031139.17|mcf.2 transforming sequence	ENSMUST00000101531.10|Mcf2|ENSMUSG00000031139.17|mcf.2 transforming sequence
mm39_v1_chr2_+_120307390_120307457	2.23558	Sox2	ENSMUST00000110716.9|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000028748.14|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000090028.13|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000110719.4|Capn3|ENSMUSG00000079110.13|calpain 3
mm39_v1_chr11_-_76359222_76359313	2.23207	Sox2	ENSMUST00000065028.14|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr3_-_33136153_33136217	2.22571	Sox2	ENSMUST00000108225.10|Pex5l|ENSMUSG00000027674.17|peroxisomal biogenesis factor 5-like
mm39_v1_chr16_-_19060440_19060460	2.22282	Sox2	ENSMUST00000103751.3|Iglv3|ENSMUSG00000076939.3|immunoglobulin lambda variable 3
mm39_v1_chr6_-_135231324_135231354	2.2216	Sox2	ENSMUST00000111911.9|Gsg1|ENSMUSG00000030206.14|germ cell associated 1	ENSMUST00000111910.4|Gsg1|ENSMUSG00000030206.14|germ cell associated 1
mm39_v1_chr7_-_102143980_102143980	2.21889	Sox2	ENSMUST00000058750.4|Olfr545|ENSMUSG00000044824.10|olfactory receptor 545
mm39_v1_chr11_+_69471185_69471208	2.21871	Sox2	ENSMUST00000171247.8|Trp53|ENSMUSG00000059552.14|transformation related protein 53	ENSMUST00000108658.10|Trp53|ENSMUSG00000059552.14|transformation related protein 53	ENSMUST00000005371.12|Trp53|ENSMUSG00000059552.14|transformation related protein 53
mm39_v1_chrX_+_154045439_154045454	2.21658	Sox2	ENSMUST00000026324.10|Acot9|ENSMUSG00000025287.16|acyl-CoA thioesterase 9
mm39_v1_chr7_-_44854316_44854316	2.20754	Sox2	ENSMUST00000121017.5|Kash5|ENSMUSG00000038292.15|KASH domain containing 5
mm39_v1_chr5_+_108213562_108213604	2.20719	Sox2	ENSMUST00000172045.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr16_+_8498618_8498657	2.20409	Sox2	ENSMUST00000201722.2|Gm5767|ENSMUSG00000107252.2|predicted gene 5767
mm39_v1_chr4_+_154255187_154255263	2.20298	Sox2	ENSMUST00000030897.15|Megf6|ENSMUSG00000057751.15|multiple EGF-like-domains 6
mm39_v1_chr9_+_96140781_96140838	2.19709	Sox2	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chrX_+_104543374_104543379	2.19474	Sox2	ENSMUST00000041758.5|Cypt2|ENSMUSG00000090132.3|cysteine-rich perinuclear theca 2
mm39_v1_chr8_+_126396557_126396613	2.19418	Sox2	ENSMUST00000053078.5|Map10|ENSMUSG00000050930.6|microtubule-associated protein 10
mm39_v1_chr3_+_145827410_145827438	2.18847	Sox2	ENSMUST00000039450.5|Mcoln3|ENSMUSG00000036853.6|mucolipin 3
mm39_v1_chr6_+_143112936_143113026	2.18612	Sox2	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr5_+_65920861_65920886	2.18336	Sox2	ENSMUST00000201489.4|N4bp2|ENSMUSG00000037795.15|NEDD4 binding protein 2
mm39_v1_chrX_+_142301666_142301699	2.18158	Sox2	ENSMUST00000134402.8|Pak3|ENSMUSG00000031284.17|p21 (RAC1) activated kinase 3
mm39_v1_chr7_-_131918926_131918957	2.17834	Sox2	ENSMUST00000080215.6|Chst15|ENSMUSG00000030930.15|carbohydrate sulfotransferase 15
mm39_v1_chr16_+_34471558_34471591	2.17683	Sox2	ENSMUST00000023530.5|Ropn1|ENSMUSG00000022832.12|ropporin, rhophilin associated protein 1
mm39_v1_chr19_-_58782874_58782893	2.17581	Sox2	ENSMUST00000028299.11|1700019N19Rik|ENSMUSG00000026931.11|RIKEN cDNA 1700019N19 gene
mm39_v1_chr7_-_107696793_107696793	2.17163	Sox2	ENSMUST00000217304.2|Olfr482|ENSMUSG00000059031.4|olfactory receptor 482
mm39_v1_chr4_-_14621805_14621819	2.1708	Sox2	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr17_-_25492543_25492589	2.16746	Sox2	ENSMUST00000173621.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000172520.2|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr2_+_172314433_172314486	2.16342	Sox2	ENSMUST00000029007.3|Fam209|ENSMUSG00000027505.3|family with sequence similarity 209
mm39_v1_chr1_+_155034452_155034522	2.15563	Sox2	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr6_+_122490534_122490542	2.15486	Sox2	ENSMUST00000032210.14|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5	ENSMUST00000148517.8|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5
mm39_v1_chr17_+_28259749_28259806	2.15389	Sox2	ENSMUST00000233869.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr17_+_37313502_37313562	2.15282	Sox2	ENSMUST00000173921.8|Zfp57|ENSMUSG00000036036.16|zinc finger protein 57	ENSMUST00000172580.8|Zfp57|ENSMUSG00000036036.16|zinc finger protein 57
mm39_v1_chr16_+_51852435_51852580	2.15181	Sox2	ENSMUST00000227879.2|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr4_-_155013002_155013030	2.14609	Sox2	ENSMUST00000152687.8|Tnfrsf14|ENSMUSG00000042333.17|tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	ENSMUST00000137803.8|Tnfrsf14|ENSMUSG00000042333.17|tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	ENSMUST00000145296.2|Tnfrsf14|ENSMUSG00000042333.17|tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)
mm39_v1_chr12_+_85043262_85043269	2.14452	Sox2	ENSMUST00000101202.10|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr1_+_43484895_43484994	2.14238	Sox2	ENSMUST00000086421.9|Nck2|ENSMUSG00000066877.12|non-catalytic region of tyrosine kinase adaptor protein 2
mm39_v1_chr2_-_165726610_165726794	2.13928	Sox2	ENSMUST00000177633.8|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8	ENSMUST00000018050.14|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8	ENSMUST00000088113.11|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8
mm39_v1_chr7_+_125871761_125871791	2.13888	Sox2	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr5_+_75735576_75735663	2.13628	Sox2	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr16_-_85698679_85698716	2.13563	Sox2	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr14_-_19635203_19635203	2.13333	Sox2	ENSMUST00000170694.9|Gm2237|ENSMUSG00000093979.9|predicted gene 2237
mm39_v1_chr8_-_18791557_18791583	2.13219	Sox2	ENSMUST00000033846.7|Angpt2|ENSMUSG00000031465.7|angiopoietin 2
mm39_v1_chr6_-_36787096_36787155	2.13104	Sox2	ENSMUST00000201321.2|Ptn|ENSMUSG00000029838.12|pleiotrophin	ENSMUST00000101534.5|Ptn|ENSMUSG00000029838.12|pleiotrophin
mm39_v1_chr6_-_87312681_87312706	2.12911	Sox2	ENSMUST00000204805.3|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1
mm39_v1_chr15_+_73384407_73384457	2.12408	Sox2	ENSMUST00000043414.12|Dennd3|ENSMUSG00000036661.15|DENN/MADD domain containing 3
mm39_v1_chr5_+_150183201_150183232	2.1221	Sox2	ENSMUST00000087204.9|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr7_+_140427729_140427745	2.12109	Sox2	ENSMUST00000106049.2|Odf3|ENSMUSG00000025482.12|outer dense fiber of sperm tails 3
mm39_v1_chr8_-_106306477_106306519	2.11855	Sox2	ENSMUST00000194654.2|Agrp|ENSMUSG00000005705.11|agouti related neuropeptide
mm39_v1_chr6_-_86710220_86710239	2.11816	Sox2	ENSMUST00000113679.2|Gmcl1|ENSMUSG00000001157.14|germ cell-less, spermatogenesis associated 1
mm39_v1_chr14_+_30741140_30741173	2.11168	Sox2	ENSMUST00000052239.12|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr8_-_86091970_86091982	2.11106	Sox2	ENSMUST00000121972.8|Mylk3|ENSMUSG00000031698.15|myosin light chain kinase 3
mm39_v1_chr1_+_171238911_171238952	2.10892	Sox2	ENSMUST00000160486.8|Usf1|ENSMUSG00000026641.14|upstream transcription factor 1
mm39_v1_chr13_-_9815173_9815243	2.10597	Sox2	ENSMUST00000062658.15|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000222358.2|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr11_+_87959067_87959115	2.10016	Sox2	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr11_-_114851243_114851343	2.09829	Sox2	ENSMUST00000092466.13|Cd300c|ENSMUSG00000058728.16|CD300C molecule	ENSMUST00000061637.4|Cd300c|ENSMUSG00000058728.16|CD300C molecule
mm39_v1_chr3_-_143908060_143908108	2.09361	Sox2	ENSMUST00000121112.6|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr14_+_15154724_15154724	2.09287	Sox2	ENSMUST00000165744.2|Gm3739|ENSMUSG00000091472.3|predicted gene 3739
mm39_v1_chr11_-_99884818_99884821	2.09153	Sox2	ENSMUST00000105049.2|Krtap17-1|ENSMUSG00000078252.2|keratin associated protein 17-1
mm39_v1_chr8_-_84963653_84963694	2.08716	Sox2	ENSMUST00000039480.7|Zswim4|ENSMUSG00000035671.7|zinc finger SWIM-type containing 4
mm39_v1_chr8_-_124242072_124242151	2.08694	Sox2	ENSMUST00000177240.8|Dbndd1|ENSMUSG00000031970.17|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm39_v1_chr7_-_121620366_121620445	2.08676	Sox2	ENSMUST00000033160.15|Gga2|ENSMUSG00000030872.15|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm39_v1_chr8_-_68270870_68270921	2.08013	Sox2	ENSMUST00000059374.5|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr8_+_107142031_107142044	2.07259	Sox2	ENSMUST00000212874.2|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90
mm39_v1_chr6_-_99243455_99243501	2.0693	Sox2	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr2_+_85780781_85780781	2.0682	Sox2	ENSMUST00000080698.3|Olfr1028|ENSMUSG00000057207.3|olfactory receptor 1028
mm39_v1_chr19_-_46315543_46315595	2.06759	Sox2	ENSMUST00000223917.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000224447.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000041391.5|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000096029.12|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing
mm39_v1_chr2_+_155453103_155453136	2.0656	Sox2	ENSMUST00000092995.6|Myh7b|ENSMUSG00000074652.4|myosin, heavy chain 7B, cardiac muscle, beta
mm39_v1_chr8_+_70261323_70261392	2.0637	Sox2	ENSMUST00000036074.15|Gmip|ENSMUSG00000036246.15|Gem-interacting protein	ENSMUST00000123453.2|Gmip|ENSMUSG00000036246.15|Gem-interacting protein
mm39_v1_chr17_+_37313466_37313488	2.05987	Sox2	ENSMUST00000173588.8|Zfp57|ENSMUSG00000036036.16|zinc finger protein 57
mm39_v1_chr17_+_35220252_35220324	2.05957	Sox2	ENSMUST00000174260.8|Vars|ENSMUSG00000007029.17|valyl-tRNA synthetase
mm39_v1_chr18_-_46345661_46345701	2.05901	Sox2	ENSMUST00000037011.6|Trim36|ENSMUSG00000033949.13|tripartite motif-containing 36
mm39_v1_chr2_+_122256913_122256958	2.0563	Sox2	ENSMUST00000110525.8|Slc28a2|ENSMUSG00000027219.14|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
mm39_v1_chr13_-_6686686_6686722	2.05332	Sox2	ENSMUST00000136585.2|Pfkp|ENSMUSG00000021196.15|phosphofructokinase, platelet
mm39_v1_chr1_-_175520185_175520467	2.05304	Sox2	ENSMUST00000104984.4|Chml|ENSMUSG00000078185.4|choroideremia-like	ENSMUST00000209720.2|Chml|ENSMUSG00000078185.4|choroideremia-like	ENSMUST00000211489.2|Chml|ENSMUSG00000078185.4|choroideremia-like	ENSMUST00000027809.8|Opn3|ENSMUSG00000026525.10|opsin 3	ENSMUST00000210367.2|Chml|ENSMUSG00000078185.4|choroideremia-like
mm39_v1_chr7_+_44865177_44865276	2.05093	Sox2	ENSMUST00000033060.14|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000210447.2|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000211744.2|Tead2|ENSMUSG00000030796.18|TEA domain family member 2	ENSMUST00000107801.10|Tead2|ENSMUSG00000030796.18|TEA domain family member 2
mm39_v1_chr7_+_100142544_100142593	2.05017	Sox2	ENSMUST00000126534.8|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)	ENSMUST00000207748.2|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr11_-_106605772_106605899	2.0403	Sox2	ENSMUST00000124958.3|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1
mm39_v1_chr10_+_53473032_53473100	2.03914	Sox2	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr17_-_78991691_78991781	2.03871	Sox2	ENSMUST00000145480.2|Strn|ENSMUSG00000024077.16|striatin, calmodulin binding protein
mm39_v1_chr6_-_48025845_48025890	2.03572	Sox2	ENSMUST00000095944.10|Zfp777|ENSMUSG00000071477.11|zinc finger protein 777
mm39_v1_chr10_-_30531768_30531807	2.03025	Sox2	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr7_-_85956319_85956319	2.02861	Sox2	ENSMUST00000055690.3|Olfr309|ENSMUSG00000054054.4|olfactory receptor 309
mm39_v1_chr11_-_11920540_11920642	2.02298	Sox2	ENSMUST00000109653.8|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chr6_-_30892508_30892525	2.0211	Sox2	ENSMUST00000048580.2|Tsga13|ENSMUSG00000039032.3|testis specific gene A13
mm39_v1_chr6_+_17749169_17749266	2.01859	Sox2	ENSMUST00000053148.14|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7	ENSMUST00000115417.4|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7
mm39_v1_chr13_-_49943717_49943720	2.0172	Sox2	ENSMUST00000220773.2|Gm30302|ENSMUSG00000114073.2|predicted gene, 30302
mm39_v1_chr3_+_68479578_68479723	2.01615	Sox2	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr6_+_51447613_51447726	2.00609	Sox2	ENSMUST00000114445.8|Cbx3|ENSMUSG00000029836.16|chromobox 3	ENSMUST00000114446.8|Cbx3|ENSMUSG00000029836.16|chromobox 3	ENSMUST00000141711.3|Cbx3|ENSMUSG00000029836.16|chromobox 3
mm39_v1_chr16_-_59138611_59138611	2.00535	Sox2	ENSMUST00000216261.2|Olfr204|ENSMUSG00000095928.4|olfactory receptor 204
mm39_v1_chr14_+_53853772_53853772	2.00216	Sox2	ENSMUST00000180972.3|Trav12-2|ENSMUSG00000096656.7|T cell receptor alpha variable 12-2
mm39_v1_chr18_+_69726431_69726521	1.99576	Sox2	ENSMUST00000201091.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201037.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114977.5|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr11_-_86698484_86698572	1.98906	Sox2	ENSMUST00000018569.14|Dhx40|ENSMUSG00000018425.19|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm39_v1_chr9_+_69305180_69305210	1.98722	Sox2	ENSMUST00000034761.15|Ice2|ENSMUSG00000032235.16|interactor of little elongation complex ELL subunit 2	ENSMUST00000125938.2|Ice2|ENSMUSG00000032235.16|interactor of little elongation complex ELL subunit 2
mm39_v1_chr3_-_9898676_9898706	1.9841	Sox2	ENSMUST00000108384.9|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr7_+_28140450_28140489	1.98231	Sox2	ENSMUST00000135686.2|Gmfg|ENSMUSG00000060791.16|glia maturation factor, gamma
mm39_v1_chr4_+_83335947_83335995	1.98185	Sox2	ENSMUST00000030206.10|Snapc3|ENSMUSG00000028483.14|small nuclear RNA activating complex, polypeptide 3	ENSMUST00000071544.11|Snapc3|ENSMUSG00000028483.14|small nuclear RNA activating complex, polypeptide 3
mm39_v1_chr4_+_43406435_43406615	1.98164	Sox2	ENSMUST00000098106.9|Rusc2|ENSMUSG00000035969.16|RUN and SH3 domain containing 2	ENSMUST00000139198.2|Rusc2|ENSMUSG00000035969.16|RUN and SH3 domain containing 2
mm39_v1_chr2_-_73605387_73605456	1.98098	Sox2	ENSMUST00000166199.9|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr11_-_88608920_88608931	1.97934	Sox2	ENSMUST00000092794.12|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr17_+_47451868_47451868	1.97496	Sox2	ENSMUST00000190080.9|Trerf1|ENSMUSG00000064043.16|transcriptional regulating factor 1
mm39_v1_chr5_-_123859153_123859175	1.97397	Sox2	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr6_+_92069376_92069414	1.96976	Sox2	ENSMUST00000113463.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr18_-_23171713_23171733	1.96971	Sox2	ENSMUST00000081423.13|Nol4|ENSMUSG00000041923.16|nucleolar protein 4
mm39_v1_chr15_-_75777210_75777238	1.96788	Sox2	ENSMUST00000127550.2|Eef1d|ENSMUSG00000055762.17|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm39_v1_chr7_-_128020397_128020482	1.95885	Sox2	ENSMUST00000147840.2|Rgs10|ENSMUSG00000030844.12|regulator of G-protein signalling 10
mm39_v1_chr18_+_42644552_42644586	1.95445	Sox2	ENSMUST00000237602.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000236088.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000025375.15|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr8_-_23143422_23143474	1.9517	Sox2	ENSMUST00000033938.7|Polb|ENSMUSG00000031536.7|polymerase (DNA directed), beta
mm39_v1_chr9_+_7764042_7764179	1.94309	Sox2	ENSMUST00000052865.16|Tmem123|ENSMUSG00000050912.16|transmembrane protein 123
mm39_v1_chr12_+_76417040_76417040	1.93668	Sox2	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr6_+_122490635_122490647	1.93453	Sox2	ENSMUST00000142896.8|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5	ENSMUST00000121656.2|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5
mm39_v1_chr10_+_40225272_40225385	1.93401	Sox2	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr9_+_106391771_106391783	1.93346	Sox2	ENSMUST00000085113.5|Iqcf5|ENSMUSG00000066382.5|IQ motif containing F5
mm39_v1_chr2_-_164876690_164876787	1.93114	Sox2	ENSMUST00000122070.2|Ncoa5|ENSMUSG00000039804.16|nuclear receptor coactivator 5	ENSMUST00000121377.8|Ncoa5|ENSMUSG00000039804.16|nuclear receptor coactivator 5	ENSMUST00000153905.2|Ncoa5|ENSMUSG00000039804.16|nuclear receptor coactivator 5	ENSMUST00000040381.15|Ncoa5|ENSMUSG00000039804.16|nuclear receptor coactivator 5
mm39_v1_chr4_-_126861918_126861947	1.93098	Sox2	ENSMUST00000106108.9|Zmym4|ENSMUSG00000042446.17|zinc finger, MYM-type 4
mm39_v1_chr12_+_24758240_24758291	1.92823	Sox2	ENSMUST00000020980.12|Rrm2|ENSMUSG00000020649.12|ribonucleotide reductase M2
mm39_v1_chr2_-_73605684_73605723	1.92488	Sox2	ENSMUST00000112024.10|Chn1|ENSMUSG00000056486.19|chimerin 1	ENSMUST00000180045.8|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr4_+_116078874_116078933	1.92409	Sox2	ENSMUST00000106490.3|Pik3r3|ENSMUSG00000028698.14|phosphoinositide-3-kinase regulatory subunit 3
mm39_v1_chr14_-_70855980_70856014	1.92238	Sox2	ENSMUST00000228001.2|Dmtn|ENSMUSG00000022099.18|dematin actin binding protein
mm39_v1_chr9_-_107749982_107750028	1.91968	Sox2	ENSMUST00000183032.8|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6	ENSMUST00000035201.13|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chr18_+_82493284_82493293	1.91766	Sox2	ENSMUST00000047865.14|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr16_+_4964849_4964973	1.91532	Sox2	ENSMUST00000165810.2|Sec14l5|ENSMUSG00000091712.3|SEC14-like lipid binding 5	ENSMUST00000230616.2|Sec14l5|ENSMUSG00000091712.3|SEC14-like lipid binding 5
mm39_v1_chr9_-_119019450_119019477	1.91147	Sox2	ENSMUST00000093775.12|Slc22a14|ENSMUSG00000070280.14|solute carrier family 22 (organic cation transporter), member 14
mm39_v1_chr15_-_75439013_75439108	1.91079	Sox2	ENSMUST00000156032.2|Ly6h|ENSMUSG00000022577.18|lymphocyte antigen 6 complex, locus H	ENSMUST00000127095.8|Ly6h|ENSMUSG00000022577.18|lymphocyte antigen 6 complex, locus H
mm39_v1_chr8_+_34221861_34221976	1.90919	Sox2	ENSMUST00000170705.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr13_+_49658249_49658292	1.90868	Sox2	ENSMUST00000051504.8|Ecm2|ENSMUSG00000043631.9|extracellular matrix protein 2, female organ and adipocyte specific
mm39_v1_chr9_+_108269992_108270011	1.90764	Sox2	ENSMUST00000192995.6|1700102P08Rik|ENSMUSG00000032611.10|RIKEN cDNA 1700102P08 gene
mm39_v1_chr7_+_6386294_6386357	1.90551	Sox2	ENSMUST00000081022.9|Zfp28|ENSMUSG00000062861.9|zinc finger protein 28
mm39_v1_chr16_+_17051423_17051528	1.90212	Sox2	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr12_-_14202041_14202070	1.90004	Sox2	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr15_-_39807081_39807200	1.89913	Sox2	ENSMUST00000022916.13|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chr1_-_166237341_166237432	1.89721	Sox2	ENSMUST00000135673.8|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain	ENSMUST00000169324.8|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain	ENSMUST00000128861.3|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain
mm39_v1_chr9_+_24536487_24536497	1.892	Sox2	ENSMUST00000053956.8|Cypt4|ENSMUSG00000047995.8|cysteine-rich perinuclear theca 4
mm39_v1_chr5_-_123126550_123126599	1.88957	Sox2	ENSMUST00000086200.11|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B	ENSMUST00000156474.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr7_-_46782448_46782465	1.88888	Sox2	ENSMUST00000033142.13|Ptpn5|ENSMUSG00000030854.18|protein tyrosine phosphatase, non-receptor type 5
mm39_v1_chr2_+_160573604_160573691	1.88835	Sox2	ENSMUST00000174885.2|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1	ENSMUST00000109462.8|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1
mm39_v1_chr2_+_181134977_181135007	1.88612	Sox2	ENSMUST00000069649.9|Abhd16b|ENSMUSG00000055882.9|abhydrolase domain containing 16B
mm39_v1_chr8_-_123404811_123404921	1.88479	Sox2	ENSMUST00000006525.14|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3	ENSMUST00000064674.13|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr17_-_35984625_35984643	1.88221	Sox2	ENSMUST00000001565.15|Gtf2h4|ENSMUSG00000001524.15|general transcription factor II H, polypeptide 4
mm39_v1_chr9_+_58041818_58042018	1.88147	Sox2	ENSMUST00000128378.8|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6	ENSMUST00000150820.8|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6	ENSMUST00000167479.8|Stra6|ENSMUSG00000032327.15|stimulated by retinoic acid gene 6
mm39_v1_chr11_-_115915315_115915337	1.87371	Sox2	ENSMUST00000016703.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr11_+_94900677_94900716	1.87101	Sox2	ENSMUST00000055947.10|Samd14|ENSMUSG00000047181.13|sterile alpha motif domain containing 14
mm39_v1_chr5_+_124939739_124939836	1.86947	Sox2	ENSMUST00000111417.9|Zfp664|ENSMUSG00000079215.9|zinc finger protein 664
mm39_v1_chr9_-_72018933_72018993	1.86718	Sox2	ENSMUST00000185117.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr15_+_99024669_99024703	1.86568	Sox2	ENSMUST00000229066.2|Spats2|ENSMUSG00000051934.6|spermatogenesis associated, serine-rich 2	ENSMUST00000229663.2|Spats2|ENSMUSG00000051934.6|spermatogenesis associated, serine-rich 2
mm39_v1_chr13_+_83652352_83652374	1.86168	Sox2	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr9_+_65583826_65583835	1.85793	Sox2	ENSMUST00000153700.9|Oaz2|ENSMUSG00000040652.17|ornithine decarboxylase antizyme 2	ENSMUST00000046490.14|Oaz2|ENSMUSG00000040652.17|ornithine decarboxylase antizyme 2
mm39_v1_chr7_+_139827152_139827294	1.85467	Sox2	ENSMUST00000164583.8|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2	ENSMUST00000093984.3|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2
mm39_v1_chr10_-_12745109_12745231	1.85414	Sox2	ENSMUST00000218635.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr6_-_51443602_51443681	1.85289	Sox2	ENSMUST00000203253.2|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr14_+_53782432_53782471	1.84664	Sox2	ENSMUST00000103651.4|Trav13-1|ENSMUSG00000076839.4|T cell receptor alpha variable 13-1
mm39_v1_chr14_+_27598021_27598061	1.84621	Sox2	ENSMUST00000211684.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000210924.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr14_-_121976273_121976372	1.84008	Sox2	ENSMUST00000212376.3|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9	ENSMUST00000239077.2|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr6_-_128414616_128414694	1.83774	Sox2	ENSMUST00000151796.3|Fkbp4|ENSMUSG00000030357.11|FK506 binding protein 4
mm39_v1_chr17_+_55752485_55752551	1.83754	Sox2	ENSMUST00000025000.4|St6gal2|ENSMUSG00000024172.11|beta galactoside alpha 2,6 sialyltransferase 2
mm39_v1_chr3_-_59118293_59118315	1.83661	Sox2	ENSMUST00000040622.3|P2ry13|ENSMUSG00000036362.3|purinergic receptor P2Y, G-protein coupled 13
mm39_v1_chr3_+_18002574_18002614	1.83177	Sox2	ENSMUST00000029080.5|Cypt12|ENSMUSG00000027564.5|cysteine-rich perinuclear theca 12
mm39_v1_chr13_+_19445054_19445055	1.83161	Sox2	ENSMUST00000164407.2|Trgc3|ENSMUSG00000091682.3|T cell receptor gamma, constant 3	ENSMUST00000198163.2|Trgc3|ENSMUSG00000091682.3|T cell receptor gamma, constant 3
mm39_v1_chr13_+_94954202_94954242	1.82767	Sox2	ENSMUST00000220825.2|Tbca|ENSMUSG00000042043.7|tubulin cofactor A
mm39_v1_chr3_-_87934772_87934808	1.82687	Sox2	ENSMUST00000005014.9|Hapln2|ENSMUSG00000004894.11|hyaluronan and proteoglycan link protein 2
mm39_v1_chr5_-_123859070_123859125	1.82627	Sox2	ENSMUST00000031376.12|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr9_+_86349226_86349273	1.82623	Sox2	ENSMUST00000188675.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chr19_-_7218512_7218566	1.81982	Sox2	ENSMUST00000025675.11|Naa40|ENSMUSG00000024764.11|N(alpha)-acetyltransferase 40, NatD catalytic subunit
mm39_v1_chr8_+_34222058_34222167	1.81513	Sox2	ENSMUST00000167264.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)	ENSMUST00000187392.7|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr2_-_181101158_181101232	1.81251	Sox2	ENSMUST00000155535.2|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000029106.13|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46	ENSMUST00000087409.10|Zbtb46|ENSMUSG00000027583.14|zinc finger and BTB domain containing 46
mm39_v1_chr9_-_20657643_20657664	1.81173	Sox2	ENSMUST00000215999.2|Olfm2|ENSMUSG00000032172.9|olfactomedin 2
mm39_v1_chr15_-_79543090_79543157	1.81135	Sox2	ENSMUST00000109648.9|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A
mm39_v1_chr13_+_55782814_55782864	1.81015	Sox2	ENSMUST00000172272.8|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000099479.4|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46	ENSMUST00000223736.2|Ddx46|ENSMUSG00000021500.18|DEAD box helicase 46
mm39_v1_chr12_-_116226565_116226665	1.80968	Sox2	ENSMUST00000039349.8|Dync2i1|ENSMUSG00000042050.9|dynein 2 intermediate chain 1
mm39_v1_chr7_+_140427711_140427726	1.80963	Sox2	ENSMUST00000026555.12|Odf3|ENSMUSG00000025482.12|outer dense fiber of sperm tails 3
mm39_v1_chr4_+_152181155_152181176	1.80807	Sox2	ENSMUST00000105661.10|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	ENSMUST00000084115.4|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm39_v1_chr16_-_30369378_30369413	1.80019	Sox2	ENSMUST00000140402.8|Tmem44|ENSMUSG00000022537.19|transmembrane protein 44
mm39_v1_chr2_+_131333800_131333864	1.79528	Sox2	ENSMUST00000110179.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110189.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110182.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110183.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110186.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110188.8|Smox|ENSMUSG00000027333.19|spermine oxidase
mm39_v1_chr5_-_114229413_114229465	1.79237	Sox2	ENSMUST00000150106.2|Svop|ENSMUSG00000042078.15|SV2 related protein
mm39_v1_chr19_-_41836514_41836571	1.78779	Sox2	ENSMUST00000059231.4|Frat2|ENSMUSG00000047604.4|frequently rearranged in advanced T cell lymphomas 2
mm39_v1_chr14_-_52248324_52248369	1.78718	Sox2	ENSMUST00000226964.2|Zfp219|ENSMUSG00000049295.18|zinc finger protein 219
mm39_v1_chr6_-_148847633_148847682	1.78542	Sox2	ENSMUST00000132696.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr9_+_21527462_21527473	1.77719	Sox2	ENSMUST00000034707.15|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	ENSMUST00000098948.10|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr4_-_148215135_148215164	1.7762	Sox2	ENSMUST00000030862.5|Draxin|ENSMUSG00000029005.5|dorsal inhibitory axon guidance protein
mm39_v1_chr4_+_128621378_128621503	1.77611	Sox2	ENSMUST00000106079.10|Phc2|ENSMUSG00000028796.18|polyhomeotic 2	ENSMUST00000133439.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr12_-_34956910_34957056	1.77583	Sox2	ENSMUST00000239321.2|Hdac9|ENSMUSG00000004698.12|histone deacetylase 9
mm39_v1_chr9_+_65583852_65583876	1.77509	Sox2	ENSMUST00000136166.3|Oaz2|ENSMUSG00000040652.17|ornithine decarboxylase antizyme 2
mm39_v1_chr14_+_73475335_73475447	1.77443	Sox2	ENSMUST00000044405.8|Lpar6|ENSMUSG00000033446.8|lysophosphatidic acid receptor 6
mm39_v1_chr3_-_123483772_123483929	1.7715	Sox2	ENSMUST00000172537.3|Ndst3|ENSMUSG00000027977.16|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm39_v1_chr6_-_144155197_144155294	1.77029	Sox2	ENSMUST00000038815.14|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111749.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000170367.9|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr7_-_3848050_3848050	1.77027	Sox2	ENSMUST00000108615.10|Pira2|ENSMUSG00000089942.10|paired-Ig-like receptor A2	ENSMUST00000119469.2|Pira2|ENSMUSG00000089942.10|paired-Ig-like receptor A2
mm39_v1_chr7_+_141503719_141503823	1.7675	Sox2	ENSMUST00000105989.9|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000075528.12|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000174499.8|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2
mm39_v1_chr18_+_37072232_37072277	1.76616	Sox2	ENSMUST00000115662.9|Pcdha2|ENSMUSG00000104148.6|protocadherin alpha 2	ENSMUST00000195590.2|Pcdha2|ENSMUSG00000104148.6|protocadherin alpha 2
mm39_v1_chr3_-_84387700_84387764	1.76349	Sox2	ENSMUST00000194027.2|Fhdc1|ENSMUSG00000041842.16|FH2 domain containing 1	ENSMUST00000107689.7|Fhdc1|ENSMUSG00000041842.16|FH2 domain containing 1
mm39_v1_chr14_-_62530408_62530473	1.76295	Sox2	ENSMUST00000063169.10|Dleu7|ENSMUSG00000048281.10|deleted in lymphocytic leukemia, 7
mm39_v1_chr2_+_163500290_163500430	1.7629	Sox2	ENSMUST00000164399.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000064703.13|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000099105.9|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000152418.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000126182.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000131228.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma
mm39_v1_chr13_+_22129246_22129316	1.75385	Sox2	ENSMUST00000176511.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000102978.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000152258.9|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)
mm39_v1_chr19_+_29388312_29388348	1.75274	Sox2	ENSMUST00000112576.4|Pdcd1lg2|ENSMUSG00000016498.11|programmed cell death 1 ligand 2
mm39_v1_chr16_-_95883714_95883776	1.7506	Sox2	ENSMUST00000113827.4|Brwd1|ENSMUSG00000022914.18|bromodomain and WD repeat domain containing 1
mm39_v1_chr6_-_47571901_47571981	1.74926	Sox2	ENSMUST00000081721.13|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114618.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114616.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit
mm39_v1_chr17_+_28749780_28749805	1.74511	Sox2	ENSMUST00000233923.2|Armc12|ENSMUSG00000024223.4|armadillo repeat containing 12
mm39_v1_chr1_-_119765343_119765403	1.74507	Sox2	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr8_+_11606056_11606111	1.74028	Sox2	ENSMUST00000210740.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000210670.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000054399.6|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000209646.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1
mm39_v1_chr14_+_30741082_30741114	1.73829	Sox2	ENSMUST00000112098.11|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112095.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112106.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000146325.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr2_-_45000389_45000766	1.73782	Sox2	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr16_-_90841360_90841431	1.73677	Sox2	ENSMUST00000118522.8|Paxbp1|ENSMUSG00000022974.13|PAX3 and PAX7 binding protein 1
mm39_v1_chr1_+_17797257_17797312	1.73585	Sox2	ENSMUST00000159958.8|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1	ENSMUST00000160305.8|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1	ENSMUST00000095075.5|Crispld1|ENSMUSG00000025776.14|cysteine-rich secretory protein LCCL domain containing 1
mm39_v1_chr17_-_80514725_80514741	1.73296	Sox2	ENSMUST00000234696.2|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7	ENSMUST00000235069.2|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7	ENSMUST00000063417.11|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7
mm39_v1_chr3_-_100876960_100876992	1.73027	Sox2	ENSMUST00000076941.12|Ttf2|ENSMUSG00000033222.17|transcription termination factor, RNA polymerase II
mm39_v1_chr11_+_101207743_101207803	1.72993	Sox2	ENSMUST00000151385.2|Psme3|ENSMUSG00000078652.10|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm39_v1_chr15_-_77527470_77527486	1.72086	Sox2	ENSMUST00000181154.2|Apol11b|ENSMUSG00000091694.10|apolipoprotein L 11b	ENSMUST00000180949.8|Apol11b|ENSMUSG00000091694.10|apolipoprotein L 11b	ENSMUST00000166623.10|Apol11b|ENSMUSG00000091694.10|apolipoprotein L 11b
mm39_v1_chr9_-_78388080_78388123	1.71953	Sox2	ENSMUST00000156988.2|Eef1a1|ENSMUSG00000037742.15|eukaryotic translation elongation factor 1 alpha 1
mm39_v1_chr2_+_31649946_31650001	1.71742	Sox2	ENSMUST00000028190.13|Abl1|ENSMUSG00000026842.17|c-abl oncogene 1, non-receptor tyrosine kinase
mm39_v1_chr4_-_62126126_62126164	1.71629	Sox2	ENSMUST00000220873.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr4_-_129590372_129590413	1.70461	Sox2	ENSMUST00000137640.3|Tmem39b|ENSMUSG00000053730.16|transmembrane protein 39b
mm39_v1_chr6_-_139987135_139987192	1.70363	Sox2	ENSMUST00000032356.13|Plcz1|ENSMUSG00000030230.16|phospholipase C, zeta 1
mm39_v1_chr6_-_129449739_129449755	1.703	Sox2	ENSMUST00000112076.9|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a	ENSMUST00000184581.3|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a
mm39_v1_chr10_+_57527084_57527110	1.6967	Sox2	ENSMUST00000175852.2|Pkib|ENSMUSG00000019876.16|protein kinase inhibitor beta, cAMP dependent, testis specific
mm39_v1_chr10_-_18887701_18887726	1.69532	Sox2	ENSMUST00000105527.2|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr1_+_171238873_171238906	1.69453	Sox2	ENSMUST00000159207.8|Usf1|ENSMUSG00000026641.14|upstream transcription factor 1	ENSMUST00000161241.8|Usf1|ENSMUSG00000026641.14|upstream transcription factor 1
mm39_v1_chr13_-_69887964_69888008	1.69277	Sox2	ENSMUST00000065118.7|Ube2ql1|ENSMUSG00000052981.7|ubiquitin-conjugating enzyme E2Q family-like 1
mm39_v1_chr14_+_52962756_52962756	1.69061	Sox2	ENSMUST00000181483.3|Trav6d-3|ENSMUSG00000096600.6|T cell receptor alpha variable 6D-3
mm39_v1_chr19_-_29721012_29721012	1.68757	Sox2	ENSMUST00000175764.9|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr17_+_8559230_8559282	1.68615	Sox2	ENSMUST00000069742.8|Prr18|ENSMUSG00000055945.9|proline rich 18
mm39_v1_chr2_-_26561294_26561334	1.68279	Sox2	ENSMUST00000028283.2|Lcn4|ENSMUSG00000026919.2|lipocalin 4
mm39_v1_chr2_-_130681603_130681616	1.68079	Sox2	ENSMUST00000119422.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr3_-_143910926_143910981	1.67527	Sox2	ENSMUST00000120539.8|Lmo4|ENSMUSG00000028266.18|LIM domain only 4	ENSMUST00000196264.5|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr2_+_156562956_156562982	1.67324	Sox2	ENSMUST00000109566.9|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4	ENSMUST00000146412.9|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4	ENSMUST00000177013.8|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4	ENSMUST00000171030.9|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chr5_+_20112704_20112764	1.67186	Sox2	ENSMUST00000115267.7|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr6_+_122490577_122490627	1.67129	Sox2	ENSMUST00000118626.8|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5
mm39_v1_chr11_+_117123107_117123155	1.66968	Sox2	ENSMUST00000106354.9|Septin9|ENSMUSG00000059248.14|septin 9
mm39_v1_chr15_-_39807359_39807425	1.66882	Sox2	ENSMUST00000110305.3|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chr18_-_84104507_84104529	1.66796	Sox2	ENSMUST00000060303.10|Tshz1|ENSMUSG00000046982.12|teashirt zinc finger family member 1
mm39_v1_chr4_+_155045372_155045387	1.66666	Sox2	ENSMUST00000049621.7|Hes5|ENSMUSG00000048001.8|hes family bHLH transcription factor 5
mm39_v1_chr18_+_35731658_35731729	1.66366	Sox2	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr5_-_134581235_134581331	1.6612	Sox2	ENSMUST00000036999.10|Clip2|ENSMUSG00000063146.12|CAP-GLY domain containing linker protein 2	ENSMUST00000100647.7|Clip2|ENSMUSG00000063146.12|CAP-GLY domain containing linker protein 2
mm39_v1_chr6_-_129600798_129600809	1.66029	Sox2	ENSMUST00000095412.10|Klrk1|ENSMUSG00000030149.16|killer cell lectin-like receptor subfamily K, member 1
mm39_v1_chr8_-_43594523_43594543	1.66023	Sox2	ENSMUST00000059692.4|Triml1|ENSMUSG00000031651.6|tripartite motif family-like 1
mm39_v1_chr2_-_177567397_177567406	1.65992	Sox2	ENSMUST00000108934.9|Zfp972|ENSMUSG00000074529.11|zinc finger protein 972	ENSMUST00000081529.11|Zfp972|ENSMUSG00000074529.11|zinc finger protein 972
mm39_v1_chr14_+_54713557_54713647	1.65595	Sox2	ENSMUST00000164766.8|Rem2|ENSMUSG00000022176.12|rad and gem related GTP binding protein 2
mm39_v1_chrX_-_134594530_134594544	1.65153	Sox2	ENSMUST00000078605.7|Tcp11x2|ENSMUSG00000058252.7|t-complex 11 family, X-linked 2
mm39_v1_chr14_-_20026761_20026874	1.64633	Sox2	ENSMUST00000161247.2|Gng2|ENSMUSG00000043004.14|guanine nucleotide binding protein (G protein), gamma 2
mm39_v1_chr10_+_81226145_81226161	1.64566	Sox2	ENSMUST00000156229.3|Gm48552|ENSMUSG00000114004.2|predicted gene, 48552
mm39_v1_chr1_-_155022501_155022536	1.6441	Sox2	ENSMUST00000027744.10|Mr1|ENSMUSG00000026471.15|major histocompatibility complex, class I-related
mm39_v1_chr4_-_12087911_12087991	1.64381	Sox2	ENSMUST00000050686.10|Tmem67|ENSMUSG00000049488.15|transmembrane protein 67
mm39_v1_chr6_+_47812584_47812660	1.64067	Sox2	ENSMUST00000079881.11|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398	ENSMUST00000114598.3|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398
mm39_v1_chr7_+_96730915_96731001	1.63835	Sox2	ENSMUST00000206791.2|Gab2|ENSMUSG00000004508.7|growth factor receptor bound protein 2-associated protein 2
mm39_v1_chr13_+_93441447_93441786	1.63591	Sox2	ENSMUST00000109497.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109498.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000060490.11|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109492.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109496.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109495.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr6_-_6882068_6882092	1.63016	Sox2	ENSMUST00000142635.2|Dlx5|ENSMUSG00000029755.11|distal-less homeobox 5	ENSMUST00000052609.9|Dlx5|ENSMUSG00000029755.11|distal-less homeobox 5
mm39_v1_chr14_-_54386718_54386751	1.62681	Sox2	ENSMUST00000103685.3|Trdv5|ENSMUSG00000076873.3|T cell receptor delta variable 5
mm39_v1_chr6_+_22875494_22875511	1.62639	Sox2	ENSMUST00000090568.7|Ptprz1|ENSMUSG00000068748.8|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm39_v1_chr5_-_24652775_24652852	1.62052	Sox2	ENSMUST00000123167.2|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1	ENSMUST00000030799.15|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1
mm39_v1_chr7_-_130931235_130931251	1.6176	Sox2	ENSMUST00000188899.2|Fam24b|ENSMUSG00000030858.11|family with sequence similarity 24 member B
mm39_v1_chr2_-_25873068_25873167	1.61515	Sox2	ENSMUST00000127823.2|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000134882.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr19_-_58781709_58781730	1.61352	Sox2	ENSMUST00000166692.2|1700019N19Rik|ENSMUSG00000026931.11|RIKEN cDNA 1700019N19 gene
mm39_v1_chr6_-_135231168_135231288	1.61299	Sox2	ENSMUST00000111909.8|Gsg1|ENSMUSG00000030206.14|germ cell associated 1
mm39_v1_chr9_+_69305211_69305219	1.6104	Sox2	ENSMUST00000117610.8|Ice2|ENSMUSG00000032235.16|interactor of little elongation complex ELL subunit 2	ENSMUST00000145538.2|Ice2|ENSMUSG00000032235.16|interactor of little elongation complex ELL subunit 2	ENSMUST00000117246.8|Ice2|ENSMUSG00000032235.16|interactor of little elongation complex ELL subunit 2
mm39_v1_chr7_-_44519196_44519212	1.61039	Sox2	ENSMUST00000046575.17|Ptov1|ENSMUSG00000038502.18|prostate tumor over expressed gene 1
mm39_v1_chr3_+_20111958_20112024	1.60853	Sox2	ENSMUST00000002502.12|Hltf|ENSMUSG00000002428.13|helicase-like transcription factor
mm39_v1_chr11_-_106641454_106641483	1.60484	Sox2	ENSMUST00000068021.9|Pecam1|ENSMUSG00000020717.20|platelet/endothelial cell adhesion molecule 1
mm39_v1_chr13_-_77279395_77279449	1.60322	Sox2	ENSMUST00000159300.8|Slf1|ENSMUSG00000021597.17|SMC5-SMC6 complex localization factor 1
mm39_v1_chr1_-_43235914_43235928	1.60304	Sox2	ENSMUST00000187357.2|Fhl2|ENSMUSG00000008136.15|four and a half LIM domains 2
mm39_v1_chr6_-_56346562_56346587	1.60233	Sox2	ENSMUST00000170774.8|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C	ENSMUST00000168944.8|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C
mm39_v1_chr1_+_21438462_21438555	1.60009	Sox2	ENSMUST00000070223.6|Khdc1c|ENSMUSG00000041722.8|KH domain containing 1C
mm39_v1_chr11_+_31915542_31915599	1.59885	Sox2	ENSMUST00000102829.4|4930524B15Rik|ENSMUSG00000020299.7|RIKEN cDNA 4930524B15 gene
mm39_v1_chr16_+_90627719_90627876	1.59655	Sox2	ENSMUST00000037539.15|Eva1c|ENSMUSG00000039903.19|eva-1 homolog C (C. elegans)	ENSMUST00000231280.2|Eva1c|ENSMUSG00000039903.19|eva-1 homolog C (C. elegans)
mm39_v1_chr15_+_76131020_76131031	1.59603	Sox2	ENSMUST00000229380.2|Grina|ENSMUSG00000022564.8|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm39_v1_chr18_+_35731735_35731751	1.59461	Sox2	ENSMUST00000236868.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr18_+_35732272_35732322	1.59365	Sox2	ENSMUST00000235210.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr6_-_116605914_116605965	1.59229	Sox2	ENSMUST00000079749.6|Zfp422|ENSMUSG00000059878.13|zinc finger protein 422
mm39_v1_chr5_-_122270014_122270066	1.59196	Sox2	ENSMUST00000128101.8|Ccdc63|ENSMUSG00000043036.14|coiled-coil domain containing 63	ENSMUST00000132701.2|Ccdc63|ENSMUSG00000043036.14|coiled-coil domain containing 63
mm39_v1_chr11_-_8614667_8614681	1.59183	Sox2	ENSMUST00000239111.2|Tns3|ENSMUSG00000020422.15|tensin 3
mm39_v1_chr9_-_75518357_75518385	1.58942	Sox2	ENSMUST00000213565.2|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr7_+_64151435_64151454	1.58832	Sox2	ENSMUST00000032732.15|Apba2|ENSMUSG00000030519.15|amyloid beta (A4) precursor protein-binding, family A, member 2
mm39_v1_chr5_+_77414031_77414056	1.58727	Sox2	ENSMUST00000113449.2|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr4_+_130519788_130519983	1.58724	Sox2	ENSMUST00000070478.4|Sdc3|ENSMUSG00000025743.15|syndecan 3
mm39_v1_chr18_+_37433852_37433888	1.58355	Sox2	ENSMUST00000051754.2|Pcdhb3|ENSMUSG00000045498.2|protocadherin beta 3
mm39_v1_chr5_-_137870041_137870077	1.57859	Sox2	ENSMUST00000199773.2|Pilrb2|ENSMUSG00000066682.12|paired immunoglobin-like type 2 receptor beta 2
mm39_v1_chr17_+_35460722_35460846	1.57736	Sox2	ENSMUST00000068056.12|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b	ENSMUST00000174757.8|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b	ENSMUST00000173731.8|Ddx39b|ENSMUSG00000019432.16|DEAD box helicase 39b
mm39_v1_chr7_-_78227518_78227576	1.5761	Sox2	ENSMUST00000195262.6|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000193002.6|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr7_+_16609227_16609319	1.57592	Sox2	ENSMUST00000108493.3|Dact3|ENSMUSG00000078794.5|dishevelled-binding antagonist of beta-catenin 3
mm39_v1_chr19_+_4806859_4806933	1.57571	Sox2	ENSMUST00000237921.2|Rbm4b|ENSMUSG00000033760.18|RNA binding motif protein 4B
mm39_v1_chr1_+_66360865_66360878	1.57318	Sox2	ENSMUST00000114013.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr4_-_44167987_44168016	1.56601	Sox2	ENSMUST00000143337.2|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr12_+_76128405_76128448	1.56599	Sox2	ENSMUST00000154509.8|Syne2|ENSMUSG00000063450.15|spectrin repeat containing, nuclear envelope 2
mm39_v1_chr6_+_127864543_127864604	1.56441	Sox2	ENSMUST00000032501.6|Tspan11|ENSMUSG00000030351.6|tetraspanin 11
mm39_v1_chrX_+_64091244_64091259	1.56346	Sox2	ENSMUST00000033524.3|Ctag2|ENSMUSG00000031181.3|cancer/testis antigen 2
mm39_v1_chr5_+_24569802_24569823	1.56199	Sox2	ENSMUST00000115090.6|Nos3|ENSMUSG00000028978.13|nitric oxide synthase 3, endothelial cell	ENSMUST00000030834.7|Nos3|ENSMUSG00000028978.13|nitric oxide synthase 3, endothelial cell
mm39_v1_chr7_+_127069526_127069544	1.56112	Sox2	ENSMUST00000106292.8|Prr14|ENSMUSG00000030822.16|proline rich 14
mm39_v1_chr8_-_125390107_125390122	1.5552	Sox2	ENSMUST00000034464.8|2310022B05Rik|ENSMUSG00000031983.8|RIKEN cDNA 2310022B05 gene
mm39_v1_chr14_+_53448363_53448363	1.55388	Sox2	ENSMUST00000103618.2|Trav4n-3|ENSMUSG00000095572.2|T cell receptor alpha variable 4N-3
mm39_v1_chr18_+_37827413_37827444	1.54284	Sox2	ENSMUST00000193414.2|Pcdhga5|ENSMUSG00000103567.2|protocadherin gamma subfamily A, 5
mm39_v1_chr11_-_18968955_18968973	1.54111	Sox2	ENSMUST00000068264.14|Meis1|ENSMUSG00000020160.19|Meis homeobox 1	ENSMUST00000185131.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr6_+_65019558_65019569	1.53895	Sox2	ENSMUST00000204801.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chr2_+_3115250_3115267	1.53694	Sox2	ENSMUST00000072955.12|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr1_+_97697881_97697935	1.53633	Sox2	ENSMUST00000112844.10|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1	ENSMUST00000112842.8|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1	ENSMUST00000027571.13|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1
mm39_v1_chr2_-_25873189_25873304	1.53592	Sox2	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr18_+_12874368_12874385	1.53521	Sox2	ENSMUST00000235000.2|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	ENSMUST00000115857.9|Cabyr|ENSMUSG00000024430.15|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm39_v1_chr6_-_116605882_116605897	1.53462	Sox2	ENSMUST00000057540.6|Zfp422|ENSMUSG00000059878.13|zinc finger protein 422
mm39_v1_chr7_+_100142977_100143021	1.53361	Sox2	ENSMUST00000129324.8|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr2_+_28403255_28403338	1.53238	Sox2	ENSMUST00000028170.15|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr2_+_155907658_155907679	1.53232	Sox2	ENSMUST00000137966.2|Spag4|ENSMUSG00000038180.12|sperm associated antigen 4
mm39_v1_chr2_-_26184450_26184526	1.52712	Sox2	ENSMUST00000217256.2|Ccdc187|ENSMUSG00000048038.9|coiled-coil domain containing 187	ENSMUST00000227200.2|Ccdc187|ENSMUSG00000048038.9|coiled-coil domain containing 187
mm39_v1_chr3_-_132797558_132797608	1.52662	Sox2	ENSMUST00000029651.11|Gstcd|ENSMUSG00000028018.16|glutathione S-transferase, C-terminal domain containing
mm39_v1_chr11_+_105072619_105072808	1.52082	Sox2	ENSMUST00000092537.10|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)	ENSMUST00000015107.13|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)	ENSMUST00000145048.8|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr2_-_26184563_26184572	1.51906	Sox2	ENSMUST00000057224.4|Ccdc187|ENSMUSG00000048038.9|coiled-coil domain containing 187
mm39_v1_chr8_-_120567236_120567288	1.51815	Sox2	ENSMUST00000211873.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000168698.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000034285.14|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)
mm39_v1_chr3_+_60408678_60408699	1.51643	Sox2	ENSMUST00000191747.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000194069.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr15_-_76809607_76809648	1.51591	Sox2	ENSMUST00000229865.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647	ENSMUST00000229055.2|Zfp647|ENSMUSG00000054967.8|zinc finger protein 647
mm39_v1_chr17_+_26471889_26471957	1.51469	Sox2	ENSMUST00000114976.9|Luc7l|ENSMUSG00000024188.17|Luc7-like	ENSMUST00000140427.8|Luc7l|ENSMUSG00000024188.17|Luc7-like	ENSMUST00000119928.8|Luc7l|ENSMUSG00000024188.17|Luc7-like
mm39_v1_chr18_-_88945571_88945605	1.51468	Sox2	ENSMUST00000147313.2|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr11_-_79145489_79145506	1.51275	Sox2	ENSMUST00000017821.12|Wsb1|ENSMUSG00000017677.12|WD repeat and SOCS box-containing 1
mm39_v1_chr1_-_58463200_58463234	1.50951	Sox2	ENSMUST00000034868.14|Clk1|ENSMUSG00000026034.18|CDC-like kinase 1
mm39_v1_chr12_+_76118790_76118853	1.5092	Sox2	ENSMUST00000131480.8|Syne2|ENSMUSG00000063450.15|spectrin repeat containing, nuclear envelope 2
mm39_v1_chr1_-_136273811_136273884	1.50385	Sox2	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr7_+_43090206_43090257	1.50286	Sox2	ENSMUST00000040227.3|Cldnd2|ENSMUSG00000038973.3|claudin domain containing 2
mm39_v1_chr13_+_65426624_65426717	1.50208	Sox2	ENSMUST00000126879.8|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369	ENSMUST00000130799.8|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369	ENSMUST00000155732.2|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369
mm39_v1_chr7_-_127214372_127214391	1.50038	Sox2	ENSMUST00000128731.8|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629	ENSMUST00000122066.8|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629
mm39_v1_chr11_-_86964881_86964943	1.49623	Sox2	ENSMUST00000020804.8|Gdpd1|ENSMUSG00000061666.7|glycerophosphodiester phosphodiesterase domain containing 1
mm39_v1_chr4_+_130297132_130297245	1.49575	Sox2	ENSMUST00000105993.4|Nkain1|ENSMUSG00000078532.10|Na+/K+ transporting ATPase interacting 1
mm39_v1_chr16_-_50252703_50252772	1.49474	Sox2	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr4_+_141171965_141172025	1.49363	Sox2	ENSMUST00000006377.13|Zbtb17|ENSMUSG00000006215.13|zinc finger and BTB domain containing 17
mm39_v1_chr7_+_75292971_75293067	1.48789	Sox2	ENSMUST00000207998.2|Akap13|ENSMUSG00000066406.17|A kinase (PRKA) anchor protein 13
mm39_v1_chr14_+_54032814_54032814	1.48409	Sox2	ENSMUST00000103671.4|Trav13-5|ENSMUSG00000087666.4|T cell receptor alpha variable 13-5
mm39_v1_chr6_+_86605146_86605190	1.48352	Sox2	ENSMUST00000043400.9|Asprv1|ENSMUSG00000033508.9|aspartic peptidase, retroviral-like 1
mm39_v1_chr4_+_112089442_112089471	1.48252	Sox2	ENSMUST00000038455.12|Skint3|ENSMUSG00000070868.12|selection and upkeep of intraepithelial T cells 3	ENSMUST00000170945.2|Skint3|ENSMUSG00000070868.12|selection and upkeep of intraepithelial T cells 3
mm39_v1_chr9_+_21527526_21527578	1.47947	Sox2	ENSMUST00000174008.8|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr7_+_99115211_99115242	1.4752	Sox2	ENSMUST00000037359.9|Klhl35|ENSMUSG00000035298.9|kelch-like 35
mm39_v1_chr7_+_100143250_100143304	1.4728	Sox2	ENSMUST00000153287.8|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr5_-_90487583_90487617	1.47244	Sox2	ENSMUST00000197021.2|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr14_+_14159978_14160002	1.47108	Sox2	ENSMUST00000137133.2|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000036070.15|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A	ENSMUST00000121887.8|Fam107a|ENSMUSG00000021750.17|family with sequence similarity 107, member A
mm39_v1_chr1_-_165762469_165762605	1.46981	Sox2	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr9_-_58220469_58220498	1.46675	Sox2	ENSMUST00000061799.10|Loxl1|ENSMUSG00000032334.11|lysyl oxidase-like 1
mm39_v1_chr1_+_64571942_64572013	1.46583	Sox2	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr7_+_140239843_140239843	1.46552	Sox2	ENSMUST00000218865.2|Olfr539|ENSMUSG00000059136.5|olfactory receptor 539
mm39_v1_chr6_+_139987275_139987288	1.46163	Sox2	ENSMUST00000043797.6|Capza3|ENSMUSG00000041791.7|capping protein (actin filament) muscle Z-line, alpha 3
mm39_v1_chr6_-_40496403_40496442	1.45956	Sox2	ENSMUST00000031967.6|Prss37|ENSMUSG00000029909.7|protease, serine 37
mm39_v1_chr11_-_91468339_91468406	1.45933	Sox2	ENSMUST00000061019.6|Kif2b|ENSMUSG00000046755.6|kinesin family member 2B
mm39_v1_chr2_+_157401998_157402050	1.45833	Sox2	ENSMUST00000153739.9|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173595.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000109526.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173839.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173041.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173793.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000172487.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000088484.6|Nnat|ENSMUSG00000067786.17|neuronatin
mm39_v1_chr7_-_12743720_12743783	1.45509	Sox2	ENSMUST00000210282.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000172240.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000051390.9|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000209997.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45
mm39_v1_chr11_-_121119864_121119921	1.45459	Sox2	ENSMUST00000137299.8|Cybc1|ENSMUSG00000039294.15|cytochrome b 245 chaperone 1
mm39_v1_chr10_+_128139227_128139287	1.45387	Sox2	ENSMUST00000218315.2|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit	ENSMUST00000219721.2|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit
mm39_v1_chr11_+_94901104_94901119	1.45077	Sox2	ENSMUST00000124735.2|Samd14|ENSMUSG00000047181.13|sterile alpha motif domain containing 14
mm39_v1_chr9_+_18389679_18389699	1.44963	Sox2	ENSMUST00000215255.2|Mbd3l1|ENSMUSG00000038691.6|methyl-CpG binding domain protein 3-like 1
mm39_v1_chr8_+_3520841_3520862	1.44565	Sox2	ENSMUST00000047265.13|Tex45|ENSMUSG00000040340.14|testis expressed 45
mm39_v1_chr2_+_138120401_138120451	1.44466	Sox2	ENSMUST00000075410.5|Btbd3|ENSMUSG00000062098.12|BTB (POZ) domain containing 3
mm39_v1_chr7_+_27878894_27878960	1.44399	Sox2	ENSMUST00000085901.13|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	ENSMUST00000172761.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr3_-_57754901_57755021	1.44381	Sox2	ENSMUST00000120289.3|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr15_-_96597610_96597617	1.44374	Sox2	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr7_+_103978678_103978678	1.44363	Sox2	ENSMUST00000180136.2|Trim34b|ENSMUSG00000090215.10|tripartite motif-containing 34B	ENSMUST00000106847.9|Trim34b|ENSMUSG00000090215.10|tripartite motif-containing 34B
mm39_v1_chr11_-_104332528_104332621	1.44348	Sox2	ENSMUST00000106971.2|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr2_-_152793469_152793528	1.44	Sox2	ENSMUST00000037715.7|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr2_+_153491363_153491380	1.43956	Sox2	ENSMUST00000072997.10|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109773.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109774.9|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000081628.13|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000103151.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000056495.14|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000088976.12|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109772.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000103150.10|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B
mm39_v1_chr11_-_97466035_97466061	1.43899	Sox2	ENSMUST00000107596.9|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238314.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238597.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238342.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1
mm39_v1_chr11_-_120472022_120472206	1.43727	Sox2	ENSMUST00000067936.6|Arhgdia|ENSMUSG00000025132.14|Rho GDP dissociation inhibitor (GDI) alpha
mm39_v1_chr4_+_43875524_43875558	1.43657	Sox2	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr4_-_115638209_115638220	1.4345	Sox2	ENSMUST00000106521.2|Tex38|ENSMUSG00000044556.4|testis expressed 38
mm39_v1_chr14_+_54119038_54119069	1.42753	Sox2	ENSMUST00000103676.9|Trdv1|ENSMUSG00000076864.10|T cell receptor delta variable 1	ENSMUST00000187163.2|Trdv1|ENSMUSG00000076864.10|T cell receptor delta variable 1
mm39_v1_chr11_+_59995796_59995862	1.42651	Sox2	ENSMUST00000064190.13|Rai1|ENSMUSG00000062115.16|retinoic acid induced 1
mm39_v1_chr7_+_91321500_91321598	1.42624	Sox2	ENSMUST00000238619.2|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000238467.2|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr9_+_3335469_3335501	1.42598	Sox2	ENSMUST00000053407.13|Alkbh8|ENSMUSG00000025899.15|alkB homolog 8, tRNA methyltransferase	ENSMUST00000211933.2|Alkbh8|ENSMUSG00000025899.15|alkB homolog 8, tRNA methyltransferase	ENSMUST00000212666.2|Alkbh8|ENSMUSG00000025899.15|alkB homolog 8, tRNA methyltransferase
mm39_v1_chr12_-_113823290_113823320	1.42448	Sox2	ENSMUST00000103459.5|Ighv5-17|ENSMUSG00000095571.3|immunoglobulin heavy variable 5-17
mm39_v1_chr4_-_62126598_62126660	1.42423	Sox2	ENSMUST00000221329.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000129511.3|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr7_-_4973960_4973960	1.41914	Sox2	ENSMUST00000144863.8|Sbk3|ENSMUSG00000085272.8|SH3 domain binding kinase family, member 3
mm39_v1_chr15_+_98532624_98532659	1.41795	Sox2	ENSMUST00000003442.9|Cacnb3|ENSMUSG00000003352.15|calcium channel, voltage-dependent, beta 3 subunit
mm39_v1_chr6_+_17065141_17065223	1.41272	Sox2	ENSMUST00000115467.11|Tes|ENSMUSG00000029552.20|testin LIM domain protein	ENSMUST00000154266.3|Tes|ENSMUSG00000029552.20|testin LIM domain protein	ENSMUST00000076654.9|Tes|ENSMUSG00000029552.20|testin LIM domain protein
mm39_v1_chrX_-_104972844_104972927	1.41168	Sox2	ENSMUST00000198441.5|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000137453.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr19_-_28945194_28945253	1.40403	Sox2	ENSMUST00000162110.8|Spata6l|ENSMUSG00000064202.16|spermatogenesis associated 6 like
mm39_v1_chr10_+_128139191_128139221	1.40388	Sox2	ENSMUST00000005825.8|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit
mm39_v1_chr4_+_136011969_136011996	1.39924	Sox2	ENSMUST00000144217.8|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr10_+_53472853_53472909	1.39757	Sox2	ENSMUST00000219271.2|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr1_-_163141278_163141281	1.39602	Sox2	ENSMUST00000027878.14|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr7_-_143102524_143102579	1.396	Sox2	ENSMUST00000208093.2|Nap1l4|ENSMUSG00000059119.10|nucleosome assembly protein 1-like 4	ENSMUST00000209098.2|Nap1l4|ENSMUSG00000059119.10|nucleosome assembly protein 1-like 4
mm39_v1_chr7_+_99184645_99184709	1.39558	Sox2	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr1_+_75523092_75523158	1.39479	Sox2	ENSMUST00000150142.8|Slc4a3|ENSMUSG00000006576.17|solute carrier family 4 (anion exchanger), member 3
mm39_v1_chr11_+_83855245_83855304	1.39099	Sox2	ENSMUST00000049714.15|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000092834.12|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183714.8|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183456.8|Synrg|ENSMUSG00000034940.16|synergin, gamma
mm39_v1_chr1_-_160986880_160986889	1.38978	Sox2	ENSMUST00000135643.8|Tex50|ENSMUSG00000049160.16|testis expressed 50	ENSMUST00000178511.3|Tex50|ENSMUSG00000049160.16|testis expressed 50
mm39_v1_chr5_+_106024398_106024451	1.38912	Sox2	ENSMUST00000150440.8|Zfp326|ENSMUSG00000029290.13|zinc finger protein 326	ENSMUST00000031227.11|Zfp326|ENSMUSG00000029290.13|zinc finger protein 326
mm39_v1_chr5_-_138270995_138271102	1.38644	Sox2	ENSMUST00000161665.2|Gal3st4|ENSMUSG00000075593.11|galactose-3-O-sulfotransferase 4	ENSMUST00000100530.8|Gal3st4|ENSMUSG00000075593.11|galactose-3-O-sulfotransferase 4	ENSMUST00000161279.8|Gal3st4|ENSMUSG00000075593.11|galactose-3-O-sulfotransferase 4	ENSMUST00000161647.8|Gal3st4|ENSMUSG00000075593.11|galactose-3-O-sulfotransferase 4
mm39_v1_chr11_-_120472379_120472452	1.38589	Sox2	ENSMUST00000106197.10|Arhgdia|ENSMUSG00000025132.14|Rho GDP dissociation inhibitor (GDI) alpha
mm39_v1_chr3_+_88049633_88049790	1.38169	Sox2	ENSMUST00000001455.13|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000119251.8|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr5_-_148989821_148989863	1.38085	Sox2	ENSMUST00000139443.8|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1	ENSMUST00000085546.13|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1
mm39_v1_chr4_+_154226819_154226841	1.38003	Sox2	ENSMUST00000030895.12|Wrap73|ENSMUSG00000029029.15|WD repeat containing, antisense to Trp73
mm39_v1_chr11_-_82781369_82781452	1.37976	Sox2	ENSMUST00000092844.13|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000021033.16|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000018985.15|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D
mm39_v1_chr11_-_121120052_121120148	1.37976	Sox2	ENSMUST00000169393.8|Cybc1|ENSMUSG00000039294.15|cytochrome b 245 chaperone 1	ENSMUST00000106115.8|Cybc1|ENSMUSG00000039294.15|cytochrome b 245 chaperone 1	ENSMUST00000038709.14|Cybc1|ENSMUSG00000039294.15|cytochrome b 245 chaperone 1	ENSMUST00000147490.6|Cybc1|ENSMUSG00000039294.15|cytochrome b 245 chaperone 1
mm39_v1_chr1_-_85888729_85888795	1.37634	Sox2	ENSMUST00000086975.7|Gpr55|ENSMUSG00000049608.10|G protein-coupled receptor 55
mm39_v1_chr4_+_155778767_155778833	1.37049	Sox2	ENSMUST00000099265.3|Fndc10|ENSMUSG00000074738.3|fibronectin type III domain containing 10
mm39_v1_chr18_+_35695736_35695804	1.36718	Sox2	ENSMUST00000235851.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235581.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr2_+_146697746_146697845	1.36623	Sox2	ENSMUST00000099278.9|Kiz|ENSMUSG00000074749.11|kizuna centrosomal protein	ENSMUST00000156232.2|Kiz|ENSMUSG00000074749.11|kizuna centrosomal protein
mm39_v1_chr14_-_30909082_30909164	1.36349	Sox2	ENSMUST00000170253.8|Nisch|ENSMUSG00000021910.16|nischarin
mm39_v1_chr17_-_36008863_36008894	1.36302	Sox2	ENSMUST00000146472.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr7_+_101619327_101619393	1.36276	Sox2	ENSMUST00000210475.2|Numa1|ENSMUSG00000066306.14|nuclear mitotic apparatus protein 1
mm39_v1_chr18_+_67774659_67774695	1.36021	Sox2	ENSMUST00000025418.4|Psmg2|ENSMUSG00000024537.6|proteasome (prosome, macropain) assembly chaperone 2	ENSMUST00000235799.2|Psmg2|ENSMUSG00000024537.6|proteasome (prosome, macropain) assembly chaperone 2
mm39_v1_chr3_-_132797790_132797800	1.36019	Sox2	ENSMUST00000080583.6|Gstcd|ENSMUSG00000028018.16|glutathione S-transferase, C-terminal domain containing
mm39_v1_chr19_+_41818409_41818487	1.35313	Sox2	ENSMUST00000087155.5|Frat1|ENSMUSG00000067199.5|frequently rearranged in advanced T cell lymphomas
mm39_v1_chr3_+_30800474_30800489	1.34989	Sox2	ENSMUST00000108262.10|Samd7|ENSMUSG00000051860.14|sterile alpha motif domain containing 7
mm39_v1_chr8_-_44029744_44029744	1.3482	Sox2	ENSMUST00000049577.3|Adam26a|ENSMUSG00000048516.3|a disintegrin and metallopeptidase domain 26A (testase 3)
mm39_v1_chr9_+_118307412_118307519	1.34386	Sox2	ENSMUST00000035020.15|Eomes|ENSMUSG00000032446.15|eomesodermin
mm39_v1_chr11_-_77380492_77380527	1.34082	Sox2	ENSMUST00000037593.14|Ankrd13b|ENSMUSG00000037907.17|ankyrin repeat domain 13b	ENSMUST00000092892.10|Ankrd13b|ENSMUSG00000037907.17|ankyrin repeat domain 13b
mm39_v1_chr11_-_76462353_76462385	1.33861	Sox2	ENSMUST00000072740.13|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr7_+_27879650_27879692	1.33758	Sox2	ENSMUST00000172467.8|Dyrk1b|ENSMUSG00000002409.19|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm39_v1_chr13_-_46881388_46881482	1.33375	Sox2	ENSMUST00000021803.10|Nup153|ENSMUSG00000021374.11|nucleoporin 153
mm39_v1_chr12_-_98225676_98225718	1.33083	Sox2	ENSMUST00000021390.9|Galc|ENSMUSG00000021003.11|galactosylceramidase
mm39_v1_chr8_-_105169621_105169679	1.3303	Sox2	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr15_+_98532866_98532986	1.32859	Sox2	ENSMUST00000230490.2|Cacnb3|ENSMUSG00000003352.15|calcium channel, voltage-dependent, beta 3 subunit
mm39_v1_chr15_-_50746202_50746218	1.32848	Sox2	ENSMUST00000184885.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr9_+_109961048_109961067	1.32654	Sox2	ENSMUST00000088716.12|Smarcc1|ENSMUSG00000032481.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm39_v1_chr14_-_51162083_51162326	1.32541	Sox2	ENSMUST00000160375.8|Osgep|ENSMUSG00000006289.15|O-sialoglycoprotein endopeptidase	ENSMUST00000162177.8|Osgep|ENSMUSG00000006289.15|O-sialoglycoprotein endopeptidase
mm39_v1_chr8_-_15096046_15096092	1.32013	Sox2	ENSMUST00000050493.4|BB014433|ENSMUSG00000049008.5|expressed sequence BB014433	ENSMUST00000123331.2|BB014433|ENSMUSG00000049008.5|expressed sequence BB014433
mm39_v1_chr7_+_110376859_110376904	1.31724	Sox2	ENSMUST00000148292.2|Ampd3|ENSMUSG00000005686.18|adenosine monophosphate deaminase 3
mm39_v1_chr14_+_60502629_60502793	1.31709	Sox2	ENSMUST00000022563.9|Mtmr6|ENSMUSG00000021987.10|myotubularin related protein 6	ENSMUST00000224366.2|Mtmr6|ENSMUSG00000021987.10|myotubularin related protein 6
mm39_v1_chr6_-_136781406_136781425	1.3151	Sox2	ENSMUST00000179285.3|H4f16|ENSMUSG00000096010.3|H4 histone 16
mm39_v1_chr3_+_88624194_88624213	1.3148	Sox2	ENSMUST00000172252.2|Rit1|ENSMUSG00000028057.15|Ras-like without CAAX 1
mm39_v1_chr8_-_68270936_68270977	1.31359	Sox2	ENSMUST00000120071.8|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr1_+_43571536_43571565	1.30936	Sox2	ENSMUST00000202540.2|Nck2|ENSMUSG00000066877.12|non-catalytic region of tyrosine kinase adaptor protein 2
mm39_v1_chr10_+_90412827_90412885	1.3088	Sox2	ENSMUST00000182550.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000099364.12|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr2_+_131333866_131333913	1.30393	Sox2	ENSMUST00000110181.8|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110180.2|Smox|ENSMUSG00000027333.19|spermine oxidase
mm39_v1_chr8_-_48166955_48166973	1.29956	Sox2	ENSMUST00000212175.2|Cdkn2aip|ENSMUSG00000038069.7|CDKN2A interacting protein	ENSMUST00000038738.7|Cdkn2aip|ENSMUSG00000038069.7|CDKN2A interacting protein
mm39_v1_chr7_+_140641010_140641022	1.29801	Sox2	ENSMUST00000048002.7|B4galnt4|ENSMUSG00000055629.6|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm39_v1_chr2_+_156562929_156562951	1.29432	Sox2	ENSMUST00000131157.9|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chrX_+_156481906_156482009	1.29426	Sox2	ENSMUST00000136141.2|Smpx|ENSMUSG00000041476.13|small muscle protein, X-linked	ENSMUST00000190091.7|Smpx|ENSMUSG00000041476.13|small muscle protein, X-linked
mm39_v1_chr2_+_92014606_92014674	1.29313	Sox2	ENSMUST00000162146.8|Phf21a|ENSMUSG00000058318.16|PHD finger protein 21A	ENSMUST00000111292.8|Phf21a|ENSMUSG00000058318.16|PHD finger protein 21A	ENSMUST00000162497.8|Phf21a|ENSMUSG00000058318.16|PHD finger protein 21A
mm39_v1_chr4_+_127066667_127066681	1.29212	Sox2	ENSMUST00000106094.9|Dlgap3|ENSMUSG00000042388.15|DLG associated protein 3
mm39_v1_chr2_-_93680024_93680182	1.28669	Sox2	ENSMUST00000068513.11|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)	ENSMUST00000041593.15|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)	ENSMUST00000130077.2|Accs|ENSMUSG00000040272.15|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm39_v1_chr15_-_103163860_103163879	1.28464	Sox2	ENSMUST00000075192.13|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr4_-_116263183_116263435	1.28399	Sox2	ENSMUST00000123072.8|Mast2|ENSMUSG00000003810.14|microtubule associated serine/threonine kinase 2	ENSMUST00000144281.2|Mast2|ENSMUSG00000003810.14|microtubule associated serine/threonine kinase 2
mm39_v1_chr11_-_100504159_100504194	1.28026	Sox2	ENSMUST00000146840.3|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7
mm39_v1_chr14_+_16361108_16361108	1.28021	Sox2	ENSMUST00000165193.2|Gm3468|ENSMUSG00000094634.9|predicted gene 3468
mm39_v1_chr5_-_106844396_106844516	1.27947	Sox2	ENSMUST00000137285.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000124263.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000149128.3|Gm28039|ENSMUSG00000098302.2|predicted gene, 28039	ENSMUST00000112695.4|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000155495.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000135108.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr8_+_46081213_46081258	1.27837	Sox2	ENSMUST00000130850.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr16_-_69660606_69660632	1.27599	Sox2	ENSMUST00000076500.14|Speer2|ENSMUSG00000063163.14|spermatogenesis associated glutamate (E)-rich protein 2
mm39_v1_chr12_-_84993695_84993697	1.27442	Sox2	ENSMUST00000169161.8|Arel1|ENSMUSG00000042350.14|apoptosis resistant E3 ubiquitin protein ligase 1
mm39_v1_chr6_+_29735666_29735693	1.27316	Sox2	ENSMUST00000001812.5|Smo|ENSMUSG00000001761.8|smoothened, frizzled class receptor
mm39_v1_chr10_+_36850532_36850575	1.26892	Sox2	ENSMUST00000019911.14|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2	ENSMUST00000105510.2|Hdac2|ENSMUSG00000019777.17|histone deacetylase 2
mm39_v1_chr2_+_37333275_37333371	1.26761	Sox2	ENSMUST00000133434.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000061179.12|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr2_+_29968596_29968596	1.26749	Sox2	ENSMUST00000045246.8|Pkn3|ENSMUSG00000026785.15|protein kinase N3
mm39_v1_chr2_+_65760477_65760534	1.26639	Sox2	ENSMUST00000176109.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr5_-_137784943_137784977	1.26573	Sox2	ENSMUST00000132726.2|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr14_-_71004019_71004088	1.26464	Sox2	ENSMUST00000167242.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr3_-_58792633_58792775	1.26434	Sox2	ENSMUST00000055636.13|Clrn1|ENSMUSG00000043850.16|clarin 1	ENSMUST00000072551.7|Clrn1|ENSMUSG00000043850.16|clarin 1	ENSMUST00000051408.8|Clrn1|ENSMUSG00000043850.16|clarin 1
mm39_v1_chr4_-_44167904_44167975	1.26236	Sox2	ENSMUST00000102934.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr6_+_104469751_104469926	1.26067	Sox2	ENSMUST00000161446.2|Cntn6|ENSMUSG00000030092.15|contactin 6	ENSMUST00000161070.8|Cntn6|ENSMUSG00000030092.15|contactin 6	ENSMUST00000089215.12|Cntn6|ENSMUSG00000030092.15|contactin 6
mm39_v1_chr2_-_168048984_168049062	1.26058	Sox2	ENSMUST00000088001.6|Adnp|ENSMUSG00000051149.16|activity-dependent neuroprotective protein
mm39_v1_chr1_+_59563453_59563453	1.2604	Sox2	ENSMUST00000186434.3|Gm973|ENSMUSG00000047361.17|predicted gene 973
mm39_v1_chr17_+_33212097_33212135	1.25915	Sox2	ENSMUST00000141815.3|Zfp952|ENSMUSG00000053390.17|zinc finger protein 952
mm39_v1_chr11_-_69439934_69439934	1.25761	Sox2	ENSMUST00000108659.2|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr4_-_103148051_103148066	1.25672	Sox2	ENSMUST00000030245.10|4921539E11Rik|ENSMUSG00000028520.13|RIKEN cDNA 4921539E11 gene	ENSMUST00000168664.8|4921539E11Rik|ENSMUSG00000028520.13|RIKEN cDNA 4921539E11 gene	ENSMUST00000097944.4|4921539E11Rik|ENSMUSG00000028520.13|RIKEN cDNA 4921539E11 gene
mm39_v1_chr12_-_111679379_111679392	1.25577	Sox2	ENSMUST00000160825.2|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5	ENSMUST00000162953.2|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5
mm39_v1_chr14_-_49482846_49482931	1.25396	Sox2	ENSMUST00000227113.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000130853.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000228936.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000022398.15|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198
mm39_v1_chr16_+_34510918_34510986	1.25393	Sox2	ENSMUST00000023532.7|Ccdc14|ENSMUSG00000022833.8|coiled-coil domain containing 14
mm39_v1_chr15_+_85942928_85942981	1.24945	Sox2	ENSMUST00000138134.8|Gramd4|ENSMUSG00000035900.19|GRAM domain containing 4
mm39_v1_chr11_+_105072353_105072424	1.24907	Sox2	ENSMUST00000106941.9|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr7_+_16044336_16044380	1.24885	Sox2	ENSMUST00000136781.2|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr5_+_141842446_141842542	1.23848	Sox2	ENSMUST00000074546.7|Sdk1|ENSMUSG00000039683.17|sidekick cell adhesion molecule 1
mm39_v1_chr14_-_51162346_51162351	1.23722	Sox2	ENSMUST00000159292.8|Osgep|ENSMUSG00000006289.15|O-sialoglycoprotein endopeptidase
mm39_v1_chr5_+_114706077_114706077	1.23568	Sox2	ENSMUST00000043650.8|Fam222a|ENSMUSG00000041930.8|family with sequence similarity 222, member A
mm39_v1_chr7_-_127214398_127214444	1.23402	Sox2	ENSMUST00000134446.8|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629	ENSMUST00000084564.10|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629
mm39_v1_chr11_-_59073635_59073659	1.23103	Sox2	ENSMUST00000108793.9|Gjc2|ENSMUSG00000043448.14|gap junction protein, gamma 2
mm39_v1_chr1_-_182576739_182576753	1.22803	Sox2	ENSMUST00000060041.7|Ccdc185|ENSMUSG00000043429.8|coiled-coil domain containing 185
mm39_v1_chr17_-_29226965_29226976	1.22581	Sox2	ENSMUST00000009138.13|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38	ENSMUST00000119274.3|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr9_+_78522783_78522828	1.22543	Sox2	ENSMUST00000093812.5|Cd109|ENSMUSG00000046186.9|CD109 antigen
mm39_v1_chr7_+_127566629_127566680	1.2247	Sox2	ENSMUST00000106251.10|Fus|ENSMUSG00000030795.19|fused in sarcoma	ENSMUST00000077609.12|Fus|ENSMUSG00000030795.19|fused in sarcoma	ENSMUST00000121616.9|Fus|ENSMUSG00000030795.19|fused in sarcoma
mm39_v1_chr5_+_30218112_30218166	1.22411	Sox2	ENSMUST00000026845.12|Il6|ENSMUSG00000025746.12|interleukin 6	ENSMUST00000199183.5|Il6|ENSMUSG00000025746.12|interleukin 6	ENSMUST00000195978.5|Il6|ENSMUSG00000025746.12|interleukin 6
mm39_v1_chr9_-_49479791_49479849	1.22409	Sox2	ENSMUST00000194252.6|Ncam1|ENSMUSG00000039542.17|neural cell adhesion molecule 1
mm39_v1_chrX_+_161684221_161684258	1.22012	Sox2	ENSMUST00000101095.9|Ctps2|ENSMUSG00000031360.15|cytidine 5'-triphosphate synthase 2
mm39_v1_chr14_+_66208613_66208752	1.21994	Sox2	ENSMUST00000144619.2|Clu|ENSMUSG00000022037.16|clusterin
mm39_v1_chr12_+_86999366_86999431	1.21904	Sox2	ENSMUST00000191463.2|Cipc|ENSMUSG00000034157.13|CLOCK interacting protein, circadian
mm39_v1_chr12_-_40298072_40298086	1.21605	Sox2	ENSMUST00000169926.8|Ifrd1|ENSMUSG00000001627.13|interferon-related developmental regulator 1
mm39_v1_chr5_+_147894121_147894168	1.21387	Sox2	ENSMUST00000085558.11|Mtus2|ENSMUSG00000029651.17|microtubule associated tumor suppressor candidate 2	ENSMUST00000129092.2|Mtus2|ENSMUSG00000029651.17|microtubule associated tumor suppressor candidate 2
mm39_v1_chr2_+_9887427_9887455	1.21235	Sox2	ENSMUST00000114919.2|4930412O13Rik|ENSMUSG00000025783.3|RIKEN cDNA 4930412O13 gene
mm39_v1_chr9_-_110474398_110474436	1.21127	Sox2	ENSMUST00000149089.2|Nbeal2|ENSMUSG00000056724.16|neurobeachin-like 2
mm39_v1_chr17_-_25104910_25104925	1.20692	Sox2	ENSMUST00000234928.2|Nubp2|ENSMUSG00000039183.7|nucleotide binding protein 2
mm39_v1_chr17_+_81251997_81252073	1.20666	Sox2	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chr18_+_52901066_52901228	1.2026	Sox2	ENSMUST00000025413.14|Sncaip|ENSMUSG00000024534.16|synuclein, alpha interacting protein (synphilin)	ENSMUST00000163742.9|Sncaip|ENSMUSG00000024534.16|synuclein, alpha interacting protein (synphilin)	ENSMUST00000178011.8|Sncaip|ENSMUSG00000024534.16|synuclein, alpha interacting protein (synphilin)
mm39_v1_chr1_-_186875270_186875301	1.2016	Sox2	ENSMUST00000184543.2|Spata17|ENSMUSG00000026611.18|spermatogenesis associated 17
mm39_v1_chr9_-_88364593_88364640	1.20058	Sox2	ENSMUST00000173801.8|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein	ENSMUST00000069221.12|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein	ENSMUST00000172508.2|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein
mm39_v1_chr6_+_47221293_47221371	1.19707	Sox2	ENSMUST00000199100.5|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr7_-_44635740_44635780	1.19452	Sox2	ENSMUST00000209056.3|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000209124.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000208312.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207659.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000045325.14|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr19_+_8816663_8816698	1.1905	Sox2	ENSMUST00000160556.8|Bscl2|ENSMUSG00000071657.13|Berardinelli-Seip congenital lipodystrophy 2 (seipin)
mm39_v1_chr6_-_42670021_42670034	1.19023	Sox2	ENSMUST00000121083.8|Tcaf1|ENSMUSG00000036667.15|TRPM8 channel-associated factor 1
mm39_v1_chr2_+_146854916_146855008	1.18177	Sox2	ENSMUST00000028921.6|Xrn2|ENSMUSG00000027433.6|5'-3' exoribonuclease 2
mm39_v1_chr5_+_77413282_77413396	1.18083	Sox2	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr11_-_69791712_69791755	1.18024	Sox2	ENSMUST00000108621.9|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene	ENSMUST00000100969.9|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene
mm39_v1_chr4_-_62126662_62126724	1.18012	Sox2	ENSMUST00000222050.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000068822.4|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr11_-_49603501_49603555	1.17604	Sox2	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr10_-_81463631_81463631	1.1714	Sox2	ENSMUST00000042923.9|Sirt6|ENSMUSG00000034748.17|sirtuin 6
mm39_v1_chr13_-_9815276_9815306	1.17062	Sox2	ENSMUST00000130151.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr5_+_37332834_37332852	1.16825	Sox2	ENSMUST00000208827.2|Gm1043|ENSMUSG00000117286.2|predicted gene 1043	ENSMUST00000207619.2|Gm1043|ENSMUSG00000117286.2|predicted gene 1043
mm39_v1_chr17_-_71158184_71158211	1.16679	Sox2	ENSMUST00000059775.15|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr6_-_131655849_131655849	1.16356	Sox2	ENSMUST00000076756.3|Tas2r106|ENSMUSG00000057754.3|taste receptor, type 2, member 106
mm39_v1_chr13_-_103042554_103042619	1.15444	Sox2	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr4_+_57637817_57637845	1.14801	Sox2	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr5_-_136227760_136227824	1.1455	Sox2	ENSMUST00000149151.2|Prkrip1|ENSMUSG00000039737.12|Prkr interacting protein 1 (IL11 inducible)	ENSMUST00000151786.8|Prkrip1|ENSMUSG00000039737.12|Prkr interacting protein 1 (IL11 inducible)
mm39_v1_chr15_-_58078274_58078328	1.13947	Sox2	ENSMUST00000022986.8|Fbxo32|ENSMUSG00000022358.8|F-box protein 32
mm39_v1_chr11_-_95200382_95200428	1.13932	Sox2	ENSMUST00000092766.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7	ENSMUST00000072621.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7
mm39_v1_chr19_-_5944098_5944177	1.1381	Sox2	ENSMUST00000055911.6|Tigd3|ENSMUSG00000044390.6|tigger transposable element derived 3	ENSMUST00000236767.2|Tigd3|ENSMUSG00000044390.6|tigger transposable element derived 3
mm39_v1_chr11_+_120489247_120489344	1.1375	Sox2	ENSMUST00000026128.10|Anapc11|ENSMUSG00000025135.13|anaphase promoting complex subunit 11
mm39_v1_chr8_-_86159398_86159465	1.13703	Sox2	ENSMUST00000047749.7|4921524J17Rik|ENSMUSG00000036934.10|RIKEN cDNA 4921524J17 gene
mm39_v1_chr9_-_107749886_107749941	1.13654	Sox2	ENSMUST00000195883.6|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chr9_-_70410611_70410660	1.13507	Sox2	ENSMUST00000215848.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000113595.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000213647.2|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr4_+_112470794_112470937	1.13329	Sox2	ENSMUST00000058791.14|Skint2|ENSMUSG00000034359.17|selection and upkeep of intraepithelial T cells 2	ENSMUST00000186969.2|Skint2|ENSMUSG00000034359.17|selection and upkeep of intraepithelial T cells 2
mm39_v1_chr15_+_89452529_89452586	1.13323	Sox2	ENSMUST00000023295.3|Acr|ENSMUSG00000022622.6|acrosin prepropeptide	ENSMUST00000230538.2|Acr|ENSMUSG00000022622.6|acrosin prepropeptide	ENSMUST00000230978.2|Acr|ENSMUSG00000022622.6|acrosin prepropeptide
mm39_v1_chr2_+_119505543_119505589	1.13246	Sox2	ENSMUST00000028767.9|Rtf1|ENSMUSG00000027304.10|RTF1, Paf1/RNA polymerase II complex component
mm39_v1_chr17_-_48716756_48716934	1.13191	Sox2	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr17_-_25652750_25652764	1.13125	Sox2	ENSMUST00000159610.8|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit	ENSMUST00000159048.8|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit	ENSMUST00000078496.12|Cacna1h|ENSMUSG00000024112.17|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm39_v1_chr13_-_58549079_58549405	1.13094	Sox2	ENSMUST00000224524.2|Hnrnpk|ENSMUSG00000021546.19|heterogeneous nuclear ribonucleoprotein K	ENSMUST00000224030.2|Hnrnpk|ENSMUSG00000021546.19|heterogeneous nuclear ribonucleoprotein K	ENSMUST00000224342.2|Hnrnpk|ENSMUSG00000021546.19|heterogeneous nuclear ribonucleoprotein K
mm39_v1_chr18_+_37610858_37610888	1.12903	Sox2	ENSMUST00000051442.7|Pcdhb16|ENSMUSG00000047910.7|protocadherin beta 16
mm39_v1_chr19_+_42040681_42040697	1.12888	Sox2	ENSMUST00000164518.4|4933411K16Rik|ENSMUSG00000090369.4|RIKEN cDNA 4933411K16 gene
mm39_v1_chr6_-_56346610_56346624	1.12762	Sox2	ENSMUST00000166890.8|Pde1c|ENSMUSG00000004347.18|phosphodiesterase 1C
mm39_v1_chr19_+_5385672_5385769	1.1264	Sox2	ENSMUST00000043380.5|Catsper1|ENSMUSG00000038498.5|cation channel, sperm associated 1
mm39_v1_chr7_-_44635813_44635992	1.12459	Sox2	ENSMUST00000208829.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207370.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000107843.11|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr5_-_137784912_137784930	1.12026	Sox2	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr16_+_84571011_84571033	1.1199	Sox2	ENSMUST00000114195.8|Jam2|ENSMUSG00000053062.17|junction adhesion molecule 2
mm39_v1_chr5_+_129097133_129097336	1.11376	Sox2	ENSMUST00000031383.14|Ran|ENSMUSG00000029430.14|RAN, member RAS oncogene family	ENSMUST00000111343.2|Ran|ENSMUSG00000029430.14|RAN, member RAS oncogene family
mm39_v1_chr12_-_101784727_101784800	1.11042	Sox2	ENSMUST00000222587.2|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr17_+_26471870_26471888	1.10779	Sox2	ENSMUST00000025023.15|Luc7l|ENSMUSG00000024188.17|Luc7-like
mm39_v1_chr7_-_3901119_3901140	1.10743	Sox2	ENSMUST00000070639.8|Gm14548|ENSMUSG00000074417.10|predicted gene 14548
mm39_v1_chrX_+_158242121_158242189	1.1074	Sox2	ENSMUST00000112470.3|Map7d2|ENSMUSG00000041020.15|MAP7 domain containing 2	ENSMUST00000043151.12|Map7d2|ENSMUSG00000041020.15|MAP7 domain containing 2	ENSMUST00000156172.3|Map7d2|ENSMUSG00000041020.15|MAP7 domain containing 2
mm39_v1_chr1_+_165312738_165312777	1.10693	Sox2	ENSMUST00000111440.8|Adcy10|ENSMUSG00000026567.17|adenylate cyclase 10	ENSMUST00000027852.15|Adcy10|ENSMUSG00000026567.17|adenylate cyclase 10	ENSMUST00000111439.8|Adcy10|ENSMUSG00000026567.17|adenylate cyclase 10
mm39_v1_chr2_-_37333109_37333210	1.10626	Sox2	ENSMUST00000102789.3|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000067043.5|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000112932.2|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr3_+_32762656_32762656	1.10522	Sox2	ENSMUST00000029214.14|Actl6a|ENSMUSG00000027671.15|actin-like 6A
mm39_v1_chr11_-_90528888_90528926	1.10502	Sox2	ENSMUST00000020858.14|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000107875.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000107872.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4	ENSMUST00000143203.8|Stxbp4|ENSMUSG00000020546.15|syntaxin binding protein 4
mm39_v1_chr14_+_66208498_66208523	1.10318	Sox2	ENSMUST00000128539.8|Clu|ENSMUSG00000022037.16|clusterin
mm39_v1_chr7_+_140547941_140547959	1.10206	Sox2	ENSMUST00000106040.8|Ifitm1|ENSMUSG00000025491.15|interferon induced transmembrane protein 1	ENSMUST00000026564.9|Ifitm1|ENSMUSG00000025491.15|interferon induced transmembrane protein 1
mm39_v1_chr9_+_20940669_20940751	1.10183	Sox2	ENSMUST00000001040.7|Icam4|ENSMUSG00000001014.7|intercellular adhesion molecule 4, Landsteiner-Wiener blood group	ENSMUST00000215077.2|Icam4|ENSMUSG00000001014.7|intercellular adhesion molecule 4, Landsteiner-Wiener blood group
mm39_v1_chr16_-_16494269_16494269	1.09873	Sox2	ENSMUST00000206365.3|Olfr19|ENSMUSG00000048101.7|olfactory receptor 19
mm39_v1_chr14_+_35816874_35816926	1.098	Sox2	ENSMUST00000226305.2|4930474N05Rik|ENSMUSG00000096405.4|RIKEN cDNA 4930474N05 gene
mm39_v1_chr4_+_116415251_116415287	1.09764	Sox2	ENSMUST00000106475.2|Gpbp1l1|ENSMUSG00000034042.17|GC-rich promoter binding protein 1-like 1
mm39_v1_chr1_+_66426127_66426159	1.09627	Sox2	ENSMUST00000145419.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr8_+_106363141_106363221	1.09564	Sox2	ENSMUST00000005841.16|Ctcf|ENSMUSG00000005698.16|CCCTC-binding factor
mm39_v1_chr9_+_109961079_109961170	1.09051	Sox2	ENSMUST00000197480.5|Smarcc1|ENSMUSG00000032481.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	ENSMUST00000197984.5|Smarcc1|ENSMUSG00000032481.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	ENSMUST00000199896.2|Smarcc1|ENSMUSG00000032481.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm39_v1_chr12_-_101785307_101785321	1.08993	Sox2	ENSMUST00000021603.9|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chrX_+_11178173_11178173	1.08865	Sox2	ENSMUST00000178979.2|H2al1e|ENSMUSG00000095413.2|H2A histone family member L1E
mm39_v1_chr5_+_124065481_124065481	1.08702	Sox2	ENSMUST00000166129.5|Gm43518|ENSMUSG00000105875.2|predicted gene 43518
mm39_v1_chr11_+_80274105_80274223	1.0727	Sox2	ENSMUST00000165565.8|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000188489.7|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000017567.14|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000108216.8|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207	ENSMUST00000053740.15|Zfp207|ENSMUSG00000017421.19|zinc finger protein 207
mm39_v1_chr9_-_26772174_26772193	1.0689	Sox2	ENSMUST00000210274.2|Glb1l3|ENSMUSG00000031966.8|galactosidase, beta 1 like 3
mm39_v1_chr1_-_14380418_14380463	1.0664	Sox2	ENSMUST00000027066.13|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000168081.9|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr11_-_62622691_62622736	1.06477	Sox2	ENSMUST00000150336.8|Zfp287|ENSMUSG00000005267.14|zinc finger protein 287
mm39_v1_chr2_-_181340226_181340241	1.06277	Sox2	ENSMUST00000052416.4|Lkaaear1|ENSMUSG00000045794.4|LKAAEAR motif containing 1 (IKAAEAR murine motif)
mm39_v1_chr17_-_88372671_88372719	1.06207	Sox2	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr14_+_53797089_53797133	1.05936	Sox2	ENSMUST00000200101.2|Trav15-1-dv6-1|ENSMUSG00000094016.3|T cell receptor alpha variable 15-1-DV6-1	ENSMUST00000103653.3|Trav15-1-dv6-1|ENSMUSG00000094016.3|T cell receptor alpha variable 15-1-DV6-1
mm39_v1_chr7_-_19192672_19192782	1.05877	Sox2	ENSMUST00000239292.2|Mark4|ENSMUSG00000030397.12|MAP/microtubule affinity regulating kinase 4	ENSMUST00000085715.7|Mark4|ENSMUSG00000030397.12|MAP/microtubule affinity regulating kinase 4
mm39_v1_chr19_-_47680528_47680535	1.05537	Sox2	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr11_+_62442502_62442567	1.05495	Sox2	ENSMUST00000136938.2|Ubb|ENSMUSG00000019505.8|ubiquitin B
mm39_v1_chr7_+_105024231_105024257	1.05075	Sox2	ENSMUST00000106805.4|Gm5901|ENSMUSG00000078611.4|predicted gene 5901
mm39_v1_chr2_+_156563284_156563412	1.05025	Sox2	ENSMUST00000099145.6|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chr10_-_130291919_130291919	1.04914	Sox2	ENSMUST00000170257.4|Vmn2r86|ENSMUSG00000092162.4|vomeronasal 2, receptor 86
mm39_v1_chr13_-_9814979_9815031	1.04912	Sox2	ENSMUST00000110634.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr15_-_81614063_81614204	1.04744	Sox2	ENSMUST00000171115.3|Rangap1|ENSMUSG00000022391.17|RAN GTPase activating protein 1	ENSMUST00000170134.9|Rangap1|ENSMUSG00000022391.17|RAN GTPase activating protein 1	ENSMUST00000052374.13|Rangap1|ENSMUSG00000022391.17|RAN GTPase activating protein 1
mm39_v1_chr17_+_66089568_66089775	1.04311	Sox2	ENSMUST00000161324.8|Ppp4r1|ENSMUSG00000061950.18|protein phosphatase 4, regulatory subunit 1	ENSMUST00000161127.8|Ppp4r1|ENSMUSG00000061950.18|protein phosphatase 4, regulatory subunit 1
mm39_v1_chr9_+_39903409_39903409	1.0426	Sox2	ENSMUST00000217600.2|Olfr978|ENSMUSG00000044292.5|olfactory receptor 978
mm39_v1_chrX_-_93585668_93585749	1.04246	Sox2	ENSMUST00000026142.8|Maged1|ENSMUSG00000025151.17|MAGE family member D1
mm39_v1_chr11_-_28534260_28534325	1.04132	Sox2	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr17_-_34834938_34834952	1.04126	Sox2	ENSMUST00000097345.10|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8	ENSMUST00000015611.14|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8
mm39_v1_chr2_+_131333672_131333684	1.0405	Sox2	ENSMUST00000028806.12|Smox|ENSMUSG00000027333.19|spermine oxidase
mm39_v1_chr16_-_97652994_97653055	1.04022	Sox2	ENSMUST00000121584.8|Prdm15|ENSMUSG00000014039.19|PR domain containing 15
mm39_v1_chr17_+_25517363_25517377	1.0396	Sox2	ENSMUST00000037453.4|Prss34|ENSMUSG00000056399.3|protease, serine 34
mm39_v1_chr1_+_134313676_134313681	1.03958	Sox2	ENSMUST00000162187.2|Mgat4f|ENSMUSG00000050526.6|MGAT4 family, member F
mm39_v1_chr9_-_26772119_26772165	1.03504	Sox2	ENSMUST00000034448.6|Glb1l3|ENSMUSG00000031966.8|galactosidase, beta 1 like 3
mm39_v1_chr9_+_59198829_59198896	1.03326	Sox2	ENSMUST00000217570.2|Adpgk|ENSMUSG00000025236.12|ADP-dependent glucokinase	ENSMUST00000026266.9|Adpgk|ENSMUSG00000025236.12|ADP-dependent glucokinase
mm39_v1_chr2_+_11647653_11647672	1.03306	Sox2	ENSMUST00000150890.3|Il2ra|ENSMUSG00000026770.6|interleukin 2 receptor, alpha chain
mm39_v1_chr17_-_67354971_67355001	1.03083	Sox2	ENSMUST00000224862.2|Ptprm|ENSMUSG00000033278.11|protein tyrosine phosphatase, receptor type, M
mm39_v1_chr9_-_35179042_35179101	1.03077	Sox2	ENSMUST00000217306.2|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000125087.2|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000121564.8|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000063782.12|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000059057.14|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B
mm39_v1_chr17_+_35439810_35439810	1.02933	Sox2	ENSMUST00000118793.2|Gm16181|ENSMUSG00000081650.2|predicted gene 16181
mm39_v1_chr4_-_44167509_44167609	1.02828	Sox2	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr10_+_128745214_128745313	1.02797	Sox2	ENSMUST00000220308.2|Cd63|ENSMUSG00000025351.15|CD63 antigen
mm39_v1_chr18_+_36926929_36926992	1.02727	Sox2	ENSMUST00000001419.10|Zmat2|ENSMUSG00000001383.10|zinc finger, matrin type 2
mm39_v1_chr4_+_136038263_136038296	1.02639	Sox2	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr1_-_26726539_26726543	1.02472	Sox2	ENSMUST00000097801.4|4931408C20Rik|ENSMUSG00000073722.4|RIKEN cDNA 4931408C20 gene
mm39_v1_chr5_-_137834444_137834463	1.02338	Sox2	ENSMUST00000197586.2|Pilra|ENSMUSG00000046245.14|paired immunoglobin-like type 2 receptor alpha
mm39_v1_chr5_-_142892457_142892509	1.02329	Sox2	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr1_+_82817170_82817239	1.01939	Sox2	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr8_-_85663976_85663996	1.01819	Sox2	ENSMUST00000109741.9|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1	ENSMUST00000119820.2|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1
mm39_v1_chr5_+_21748523_21748587	1.01751	Sox2	ENSMUST00000035651.6|Lrrc17|ENSMUSG00000039883.6|leucine rich repeat containing 17
mm39_v1_chr3_+_88624145_88624190	1.01748	Sox2	ENSMUST00000029692.15|Rit1|ENSMUSG00000028057.15|Ras-like without CAAX 1	ENSMUST00000171645.8|Rit1|ENSMUSG00000028057.15|Ras-like without CAAX 1
mm39_v1_chr4_+_136038301_136038365	1.01649	Sox2	ENSMUST00000084219.12|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr5_-_38842084_38842169	1.015	Sox2	ENSMUST00000057258.11|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000178760.2|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000179555.8|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B	ENSMUST00000180214.8|Zfp518b|ENSMUSG00000046572.11|zinc finger protein 518B
mm39_v1_chr14_+_52990824_52990855	1.01344	Sox2	ENSMUST00000180717.3|Trav6d-4|ENSMUSG00000095387.6|T cell receptor alpha variable 6D-4	ENSMUST00000183820.2|Trav6d-4|ENSMUSG00000095387.6|T cell receptor alpha variable 6D-4
mm39_v1_chr2_-_153083322_153083346	1.0128	Sox2	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr16_-_18107046_18107135	1.0107	Sox2	ENSMUST00000232424.2|Dgcr8|ENSMUSG00000022718.13|DGCR8, microprocessor complex subunit	ENSMUST00000009321.11|Dgcr8|ENSMUSG00000022718.13|DGCR8, microprocessor complex subunit
mm39_v1_chr18_+_34910064_34910128	1.00963	Sox2	ENSMUST00000043775.9|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B	ENSMUST00000224715.2|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B
mm39_v1_chr7_+_120581744_120581807	1.00938	Sox2	ENSMUST00000149535.2|Mfsd13b|ENSMUSG00000030877.12|major facilitator superfamily domain containing 13B	ENSMUST00000138177.2|Mfsd13b|ENSMUSG00000030877.12|major facilitator superfamily domain containing 13B	ENSMUST00000216241.2|Mfsd13b|ENSMUSG00000030877.12|major facilitator superfamily domain containing 13B
mm39_v1_chr3_+_95067759_95067817	1.0025	Sox2	ENSMUST00000131742.8|Sema6c|ENSMUSG00000038777.20|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	ENSMUST00000090823.8|Sema6c|ENSMUSG00000038777.20|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	ENSMUST00000090821.10|Sema6c|ENSMUSG00000038777.20|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm39_v1_chr4_+_136038243_136038258	1.00225	Sox2	ENSMUST00000131671.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr7_-_5128936_5128957	1.00224	Sox2	ENSMUST00000147835.4|Rasl2-9|ENSMUSG00000083649.6|RAS-like, family 2, locus 9
mm39_v1_chr4_-_152080634_152080715	0.998977	Sox2	ENSMUST00000055688.10|Phf13|ENSMUSG00000047777.10|PHD finger protein 13
mm39_v1_chr2_-_89170692_89170692	0.99866	Sox2	ENSMUST00000099784.5|Olfr1233|ENSMUSG00000075091.6|olfactory receptor 1233
mm39_v1_chr2_-_168048795_168048842	0.998134	Sox2	ENSMUST00000057793.11|Adnp|ENSMUSG00000051149.16|activity-dependent neuroprotective protein
mm39_v1_chr11_-_5049223_5049266	0.996298	Sox2	ENSMUST00000079949.13|Ewsr1|ENSMUSG00000009079.17|Ewing sarcoma breakpoint region 1
mm39_v1_chr1_+_88998115_88998147	0.995256	Sox2	ENSMUST00000066279.11|Sh3bp4|ENSMUSG00000036206.13|SH3-domain binding protein 4
mm39_v1_chr2_+_74557418_74557545	0.994869	Sox2	ENSMUST00000111980.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chr1_+_135074520_135074606	0.993797	Sox2	ENSMUST00000027684.11|Arl8a|ENSMUSG00000026426.11|ADP-ribosylation factor-like 8A
mm39_v1_chr2_-_28473251_28473291	0.986386	Sox2	ENSMUST00000028157.9|Gtf3c5|ENSMUSG00000026816.15|general transcription factor IIIC, polypeptide 5
mm39_v1_chr1_-_162485675_162485788	0.985338	Sox2	ENSMUST00000193898.2|Myocos|ENSMUSG00000091060.3|myocilin opposite strand	ENSMUST00000169439.3|Myocos|ENSMUSG00000091060.3|myocilin opposite strand
mm39_v1_chr1_-_190711151_190711199	0.984629	Sox2	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chrX_+_113384008_113384051	0.978351	Sox2	ENSMUST00000113371.8|Klhl4|ENSMUSG00000025597.14|kelch-like 4	ENSMUST00000040504.12|Klhl4|ENSMUSG00000025597.14|kelch-like 4
mm39_v1_chr18_+_37858753_37858810	0.976943	Sox2	ENSMUST00000066149.9|Pcdhga8|ENSMUSG00000103897.2|protocadherin gamma subfamily A, 8
mm39_v1_chr2_+_152907875_152907924	0.976043	Sox2	ENSMUST00000238488.2|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like	ENSMUST00000129377.8|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like	ENSMUST00000109800.2|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like
mm39_v1_chr7_+_90739904_90739959	0.97471	Sox2	ENSMUST00000107196.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000074273.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr4_+_150366028_150366103	0.974211	Sox2	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr17_-_80597495_80597614	0.973702	Sox2	ENSMUST00000086555.11|Dhx57|ENSMUSG00000035051.16|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm39_v1_chr15_-_98432111_98432186	0.973537	Sox2	ENSMUST00000116400.4|Kansl2|ENSMUSG00000022992.18|KAT8 regulatory NSL complex subunit 2	ENSMUST00000023727.17|Kansl2|ENSMUSG00000022992.18|KAT8 regulatory NSL complex subunit 2	ENSMUST00000230542.2|Kansl2|ENSMUSG00000022992.18|KAT8 regulatory NSL complex subunit 2
mm39_v1_chr10_+_84591919_84591948	0.971811	Sox2	ENSMUST00000060397.13|Rfx4|ENSMUSG00000020037.16|regulatory factor X, 4 (influences HLA class II expression)
mm39_v1_chr5_-_73413888_73413979	0.970633	Sox2	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr1_+_66361252_66361278	0.966817	Sox2	ENSMUST00000123647.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr10_-_117681864_117681940	0.96519	Sox2	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr8_+_95703506_95703621	0.964427	Sox2	ENSMUST00000212581.2|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr2_-_175017664_175017664	0.962714	Sox2	ENSMUST00000109054.3|Gm14443|ENSMUSG00000078902.4|predicted gene 14443
mm39_v1_chr12_-_55045887_55045928	0.962271	Sox2	ENSMUST00000173529.2|Baz1a|ENSMUSG00000035021.14|bromodomain adjacent to zinc finger domain 1A
mm39_v1_chr14_-_64225223_64225242	0.960687	Sox2	ENSMUST00000022532.6|4930578I06Rik|ENSMUSG00000021961.7|RIKEN cDNA 4930578I06 gene
mm39_v1_chr2_+_3285269_3285327	0.957907	Sox2	ENSMUST00000102989.10|Nmt2|ENSMUSG00000026643.17|N-myristoyltransferase 2	ENSMUST00000091504.5|Nmt2|ENSMUSG00000026643.17|N-myristoyltransferase 2
mm39_v1_chr15_-_44291699_44291733	0.956297	Sox2	ENSMUST00000038719.8|Nudcd1|ENSMUSG00000038736.11|NudC domain containing 1
mm39_v1_chr17_-_46581697_46581737	0.951905	Sox2	ENSMUST00000224055.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1
mm39_v1_chr11_-_69791756_69791767	0.95041	Sox2	ENSMUST00000018714.13|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene	ENSMUST00000128046.2|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene
mm39_v1_chr11_-_107361525_107361554	0.950076	Sox2	ENSMUST00000103064.10|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr15_+_102234551_102234587	0.949669	Sox2	ENSMUST00000166658.8|Pfdn5|ENSMUSG00000001289.13|prefoldin 5	ENSMUST00000062492.11|Pfdn5|ENSMUSG00000001289.13|prefoldin 5
mm39_v1_chr15_-_36792649_36792674	0.947412	Sox2	ENSMUST00000126184.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr11_-_115590318_115590360	0.944822	Sox2	ENSMUST00000106497.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr17_+_35117438_35117479	0.94224	Sox2	ENSMUST00000114033.9|Ehmt2|ENSMUSG00000013787.16|euchromatic histone lysine N-methyltransferase 2	ENSMUST00000078061.13|Ehmt2|ENSMUSG00000013787.16|euchromatic histone lysine N-methyltransferase 2
mm39_v1_chr17_+_75312520_75312563	0.94086	Sox2	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr4_+_152160713_152160840	0.939497	Sox2	ENSMUST00000239025.2|Plekhg5|ENSMUSG00000039713.18|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm39_v1_chr16_-_17711950_17711969	0.939484	Sox2	ENSMUST00000155943.9|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2
mm39_v1_chr2_-_165740864_165740936	0.93863	Sox2	ENSMUST00000136842.2|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8
mm39_v1_chr11_+_93935021_93935064	0.93852	Sox2	ENSMUST00000075695.13|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9	ENSMUST00000092777.11|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr7_+_99030621_99030781	0.933903	Sox2	ENSMUST00000037528.10|Gdpd5|ENSMUSG00000035314.11|glycerophosphodiester phosphodiesterase domain containing 5
mm39_v1_chr2_+_32766126_32766253	0.931174	Sox2	ENSMUST00000028135.15|Niban2|ENSMUSG00000026796.17|niban apoptosis regulator 2
mm39_v1_chrX_-_37665041_37665081	0.930284	Sox2	ENSMUST00000050083.6|Cul4b|ENSMUSG00000031095.16|cullin 4B	ENSMUST00000115118.8|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr4_+_116414855_116414932	0.929963	Sox2	ENSMUST00000030460.15|Gpbp1l1|ENSMUSG00000034042.17|GC-rich promoter binding protein 1-like 1
mm39_v1_chr12_-_112640626_112640710	0.929037	Sox2	ENSMUST00000001780.10|Akt1|ENSMUSG00000001729.15|thymoma viral proto-oncogene 1
mm39_v1_chr1_+_64572050_64572059	0.927416	Sox2	ENSMUST00000190348.2|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr3_+_32763313_32763313	0.926413	Sox2	ENSMUST00000126144.3|Actl6a|ENSMUSG00000027671.15|actin-like 6A
mm39_v1_chr17_-_32503060_32503092	0.925642	Sox2	ENSMUST00000003726.16|Brd4|ENSMUSG00000024002.19|bromodomain containing 4	ENSMUST00000121285.8|Brd4|ENSMUSG00000024002.19|bromodomain containing 4	ENSMUST00000120276.9|Brd4|ENSMUSG00000024002.19|bromodomain containing 4
mm39_v1_chr14_-_80008745_80008758	0.923598	Sox2	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr7_+_29008840_29008938	0.922091	Sox2	ENSMUST00000137848.2|Dpf1|ENSMUSG00000030584.15|D4, zinc and double PHD fingers family 1
mm39_v1_chr4_-_11254253_11254266	0.920854	Sox2	ENSMUST00000044616.10|Ints8|ENSMUSG00000040738.11|integrator complex subunit 8	ENSMUST00000108319.9|Ints8|ENSMUSG00000040738.11|integrator complex subunit 8	ENSMUST00000108318.3|Ints8|ENSMUSG00000040738.11|integrator complex subunit 8
mm39_v1_chr5_+_34494272_34494282	0.9196	Sox2	ENSMUST00000182047.2|Rnf4|ENSMUSG00000029110.14|ring finger protein 4
mm39_v1_chr7_-_3828640_3828686	0.916912	Sox2	ENSMUST00000189095.7|Gm15448|ENSMUSG00000074419.12|predicted gene 15448	ENSMUST00000094911.5|Gm15448|ENSMUSG00000074419.12|predicted gene 15448	ENSMUST00000153846.8|Gm15448|ENSMUSG00000074419.12|predicted gene 15448	ENSMUST00000108619.8|Gm15448|ENSMUSG00000074419.12|predicted gene 15448	ENSMUST00000108620.8|Gm15448|ENSMUSG00000074419.12|predicted gene 15448
mm39_v1_chr17_-_37574640_37574640	0.913305	Sox2	ENSMUST00000080759.5|Olfr98|ENSMUSG00000063660.5|olfactory receptor 98
mm39_v1_chr12_-_75678092_75678134	0.911297	Sox2	ENSMUST00000238938.2|Rplp2-ps1|ENSMUSG00000118552.2|ribosomal protein, large P2, pseudogene 1
mm39_v1_chr6_+_70703409_70703456	0.91026	Sox2	ENSMUST00000103410.3|Igkc|ENSMUSG00000076609.3|immunoglobulin kappa constant
mm39_v1_chr8_-_96302083_96302083	0.910158	Sox2	ENSMUST00000213096.2|Prss54|ENSMUSG00000048400.14|protease, serine 54	ENSMUST00000052690.13|Prss54|ENSMUSG00000048400.14|protease, serine 54
mm39_v1_chr7_+_4918199_4918229	0.908531	Sox2	ENSMUST00000116354.4|Zfp628|ENSMUSG00000074406.6|zinc finger protein 628
mm39_v1_chr6_-_144155167_144155195	0.901761	Sox2	ENSMUST00000077160.12|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr5_+_100187844_100187938	0.901597	Sox2	ENSMUST00000169390.8|Enoph1|ENSMUSG00000029326.14|enolase-phosphatase 1	ENSMUST00000031268.8|Enoph1|ENSMUSG00000029326.14|enolase-phosphatase 1
mm39_v1_chr11_-_68848271_68848311	0.901072	Sox2	ENSMUST00000108671.2|Arhgef15|ENSMUSG00000052921.14|Rho guanine nucleotide exchange factor (GEF) 15
mm39_v1_chr12_-_80483343_80483379	0.897216	Sox2	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr12_-_100995102_100995180	0.89522	Sox2	ENSMUST00000223097.2|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr14_-_55329734_55329781	0.892099	Sox2	ENSMUST00000036328.9|Zfhx2|ENSMUSG00000040721.10|zinc finger homeobox 2
mm39_v1_chr11_-_76468527_76468553	0.885319	Sox2	ENSMUST00000176179.8|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr15_+_102387053_102387105	0.883999	Sox2	ENSMUST00000230682.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231085.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr19_+_8931187_8931221	0.882415	Sox2	ENSMUST00000096239.7|Tut1|ENSMUSG00000071645.7|terminal uridylyl transferase 1, U6 snRNA-specific
mm39_v1_chr17_+_35117905_35117962	0.881355	Sox2	ENSMUST00000097342.10|Ehmt2|ENSMUSG00000013787.16|euchromatic histone lysine N-methyltransferase 2	ENSMUST00000013931.12|Ehmt2|ENSMUSG00000013787.16|euchromatic histone lysine N-methyltransferase 2
mm39_v1_chr4_-_14621669_14621786	0.881088	Sox2	ENSMUST00000143105.2|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr14_-_58127639_58127696	0.877953	Sox2	ENSMUST00000226057.2|Zdhhc20|ENSMUSG00000021969.9|zinc finger, DHHC domain containing 20
mm39_v1_chr17_+_55752370_55752390	0.876699	Sox2	ENSMUST00000133899.2|St6gal2|ENSMUSG00000024172.11|beta galactoside alpha 2,6 sialyltransferase 2	ENSMUST00000086878.10|St6gal2|ENSMUSG00000024172.11|beta galactoside alpha 2,6 sialyltransferase 2
mm39_v1_chr17_-_88372315_88372456	0.875638	Sox2	ENSMUST00000235056.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000130379.9|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr18_-_3280999_3281088	0.874749	Sox2	ENSMUST00000049942.13|Crem|ENSMUSG00000063889.17|cAMP responsive element modulator
mm39_v1_chr12_+_8724681_8724765	0.872327	Sox2	ENSMUST00000168361.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000169750.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000163730.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chrX_+_38435141_38435144	0.871077	Sox2	ENSMUST00000115114.3|Cypt15|ENSMUSG00000079619.3|cysteine-rich perinuclear theca 15
mm39_v1_chr2_+_156562989_156563004	0.871021	Sox2	ENSMUST00000000094.14|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chr2_-_32631028_32631028	0.867714	Sox2	ENSMUST00000009695.3|6330409D20Rik|ENSMUSG00000009551.3|RIKEN cDNA 6330409D20 gene
mm39_v1_chr4_-_91264670_91264714	0.86722	Sox2	ENSMUST00000107109.9|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107111.9|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107120.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr4_+_59626185_59626262	0.864485	Sox2	ENSMUST00000070150.11|E130308A19Rik|ENSMUSG00000045071.15|RIKEN cDNA E130308A19 gene	ENSMUST00000052420.7|E130308A19Rik|ENSMUSG00000045071.15|RIKEN cDNA E130308A19 gene
mm39_v1_chr15_-_75438660_75438745	0.853279	Sox2	ENSMUST00000065417.15|Ly6h|ENSMUSG00000022577.18|lymphocyte antigen 6 complex, locus H
mm39_v1_chr6_-_28831746_28831746	0.853245	Sox2	ENSMUST00000062304.7|Lrrc4|ENSMUSG00000049939.7|leucine rich repeat containing 4
mm39_v1_chr16_+_37597235_37597235	0.850417	Sox2	ENSMUST00000114763.3|Fstl1|ENSMUSG00000022816.12|follistatin-like 1
mm39_v1_chrX_+_45417884_45417893	0.850294	Sox2	ENSMUST00000059466.3|Actrt1|ENSMUSG00000046615.3|actin-related protein T1
mm39_v1_chr5_+_150042092_150042149	0.84947	Sox2	ENSMUST00000200960.4|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein	ENSMUST00000202530.4|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr3_+_153679073_153679162	0.845489	Sox2	ENSMUST00000089948.6|Slc44a5|ENSMUSG00000028360.11|solute carrier family 44, member 5
mm39_v1_chr2_+_179684288_179684355	0.844532	Sox2	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chrX_+_139243012_139243012	0.843547	Sox2	ENSMUST00000208130.2|Frmpd3|ENSMUSG00000042425.19|FERM and PDZ domain containing 3
mm39_v1_chr7_-_26895141_26895192	0.839496	Sox2	ENSMUST00000163311.9|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000126211.2|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr10_-_108535970_108536021	0.838442	Sox2	ENSMUST00000218023.2|Gm5136|ENSMUSG00000112039.2|predicted gene 5136
mm39_v1_chr2_-_45000250_45000309	0.836323	Sox2	ENSMUST00000201211.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000177302.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr7_-_44518830_44518985	0.833676	Sox2	ENSMUST00000208682.2|Ptov1|ENSMUSG00000038502.18|prostate tumor over expressed gene 1
mm39_v1_chr11_+_93934940_93934947	0.833552	Sox2	ENSMUST00000132079.8|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr11_+_116809669_116809717	0.829797	Sox2	ENSMUST00000103027.10|Mgat5b|ENSMUSG00000043857.17|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm39_v1_chr7_+_91321694_91321705	0.829166	Sox2	ENSMUST00000238608.2|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr11_-_69791774_69791827	0.8291	Sox2	ENSMUST00000102580.10|2810408A11Rik|ENSMUSG00000018570.18|RIKEN cDNA 2810408A11 gene
mm39_v1_chr19_-_46384158_46384199	0.825584	Sox2	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chr10_+_128295107_128295118	0.824194	Sox2	ENSMUST00000218228.2|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm39_v1_chr3_+_93349637_93349695	0.813282	Sox2	ENSMUST00000064257.6|Tchh|ENSMUSG00000052415.6|trichohyalin
mm39_v1_chr18_+_37807357_37807418	0.812456	Sox2	ENSMUST00000073447.8|Pcdhga3|ENSMUSG00000104346.2|protocadherin gamma subfamily A, 3
mm39_v1_chr13_+_93441307_93441443	0.811413	Sox2	ENSMUST00000080127.12|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr15_-_95426108_95426160	0.811222	Sox2	ENSMUST00000075275.3|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr5_+_148202011_148202073	0.808376	Sox2	ENSMUST00000110515.9|Mtus2|ENSMUSG00000029651.17|microtubule associated tumor suppressor candidate 2
mm39_v1_chr1_-_171115487_171115564	0.808073	Sox2	ENSMUST00000111305.8|Usp21|ENSMUSG00000053483.16|ubiquitin specific peptidase 21	ENSMUST00000065941.12|Usp21|ENSMUSG00000053483.16|ubiquitin specific peptidase 21
mm39_v1_chr12_+_75865068_75865130	0.804586	Sox2	ENSMUST00000044217.16|Syne2|ENSMUSG00000063450.15|spectrin repeat containing, nuclear envelope 2	ENSMUST00000143031.8|Syne2|ENSMUSG00000063450.15|spectrin repeat containing, nuclear envelope 2	ENSMUST00000150317.8|Syne2|ENSMUSG00000063450.15|spectrin repeat containing, nuclear envelope 2
mm39_v1_chr13_-_103042294_103042318	0.804159	Sox2	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr7_-_127474806_127474851	0.79909	Sox2	ENSMUST00000106261.8|Zfp668|ENSMUSG00000049728.15|zinc finger protein 668	ENSMUST00000144721.2|Zfp668|ENSMUSG00000049728.15|zinc finger protein 668
mm39_v1_chr3_-_116217579_116217681	0.798847	Sox2	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr6_-_69521891_69521929	0.793603	Sox2	ENSMUST00000103356.4|Igkv4-57-1|ENSMUSG00000076555.4|immunoglobulin kappa variable 4-57-1
mm39_v1_chr11_-_77498636_77498686	0.786557	Sox2	ENSMUST00000058496.8|Taok1|ENSMUSG00000017291.14|TAO kinase 1
mm39_v1_chr13_+_56850795_56850925	0.785502	Sox2	ENSMUST00000069557.14|Smad5|ENSMUSG00000021540.17|SMAD family member 5	ENSMUST00000109876.8|Smad5|ENSMUSG00000021540.17|SMAD family member 5
mm39_v1_chr12_-_113392174_113392200	0.785443	Sox2	ENSMUST00000103427.2|Ighj4|ENSMUSG00000076618.2|immunoglobulin heavy joining 4
mm39_v1_chr3_+_104688363_104688443	0.784797	Sox2	ENSMUST00000002298.7|Ppm1j|ENSMUSG00000002228.8|protein phosphatase 1J
mm39_v1_chr5_+_21850975_21851074	0.780877	Sox2	ENSMUST00000095495.3|Armc10|ENSMUSG00000038525.17|armadillo repeat containing 10
mm39_v1_chr7_+_5059703_5059741	0.780028	Sox2	ENSMUST00000208042.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106	ENSMUST00000207974.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106
mm39_v1_chr17_+_35354430_35354543	0.776124	Sox2	ENSMUST00000173535.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173952.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr14_+_53743184_53743184	0.773851	Sox2	ENSMUST00000103583.5|Trav10|ENSMUSG00000096551.3|T cell receptor alpha variable 10
mm39_v1_chr10_+_85665234_85665358	0.769391	Sox2	ENSMUST00000217667.2|Pwp1|ENSMUSG00000001785.14|PWP1 homolog, endonuclein
mm39_v1_chr17_+_8591228_8591228	0.768756	Sox2	ENSMUST00000163578.8|T2|ENSMUSG00000058159.15|brachyury 2
mm39_v1_chr4_-_155947819_155947819	0.76711	Sox2	ENSMUST00000030949.4|Tas1r3|ENSMUSG00000029072.4|taste receptor, type 1, member 3
mm39_v1_chr6_+_51409657_51409763	0.766616	Sox2	ENSMUST00000160133.2|Nfe2l3|ENSMUSG00000029832.17|nuclear factor, erythroid derived 2, like 3
mm39_v1_chr1_-_97689263_97689391	0.765048	Sox2	ENSMUST00000171129.8|Ppip5k2|ENSMUSG00000040648.16|diphosphoinositol pentakisphosphate kinase 2
mm39_v1_chr11_-_31320065_31320081	0.764678	Sox2	ENSMUST00000020546.3|Stc2|ENSMUSG00000020303.3|stanniocalcin 2
mm39_v1_chr11_-_115590133_115590150	0.761173	Sox2	ENSMUST00000106499.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr8_+_95721378_95721416	0.760784	Sox2	ENSMUST00000212956.2|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1	ENSMUST00000212531.2|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr14_+_53081922_53082011	0.756249	Sox2	ENSMUST00000181360.3|Trav12d-1|ENSMUSG00000095689.6|T cell receptor alpha variable 12D-1	ENSMUST00000183652.2|Trav12d-1|ENSMUSG00000095689.6|T cell receptor alpha variable 12D-1
mm39_v1_chr2_+_14609063_14609117	0.754926	Sox2	ENSMUST00000114723.9|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr14_+_54014387_54014414	0.754606	Sox2	ENSMUST00000103670.4|Trav3-4|ENSMUSG00000076858.4|T cell receptor alpha variable 3-4
mm39_v1_chr8_+_91681550_91681688	0.754448	Sox2	ENSMUST00000210947.2|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr11_+_59553296_59553369	0.751919	Sox2	ENSMUST00000072031.13|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000066330.15|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000108751.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000116371.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein
mm39_v1_chr12_-_112640378_112640461	0.751508	Sox2	ENSMUST00000130342.2|Akt1|ENSMUSG00000001729.15|thymoma viral proto-oncogene 1
mm39_v1_chr19_-_24938909_24938995	0.749232	Sox2	ENSMUST00000025815.10|Cbwd1|ENSMUSG00000024878.10|COBW domain containing 1
mm39_v1_chr14_-_68893253_68893291	0.746598	Sox2	ENSMUST00000225767.3|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000111072.8|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000022642.6|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000224039.2|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28
mm39_v1_chr2_-_152793607_152793620	0.744794	Sox2	ENSMUST00000109811.4|Dusp15|ENSMUSG00000042662.17|dual specificity phosphatase-like 15
mm39_v1_chr5_+_37403098_37403108	0.743253	Sox2	ENSMUST00000031004.11|Crmp1|ENSMUSG00000029121.17|collapsin response mediator protein 1
mm39_v1_chr2_-_164197987_164197987	0.741477	Sox2	ENSMUST00000165980.2|Slpi|ENSMUSG00000017002.15|secretory leukocyte peptidase inhibitor
mm39_v1_chr17_-_33979442_33979504	0.741428	Sox2	ENSMUST00000057373.14|Rab11b|ENSMUSG00000077450.14|RAB11B, member RAS oncogene family
mm39_v1_chr9_-_106533279_106533295	0.739865	Sox2	ENSMUST00000023959.13|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2	ENSMUST00000201681.2|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2
mm39_v1_chr19_+_45139908_45140034	0.739651	Sox2	ENSMUST00000174617.3|Tlx1|ENSMUSG00000025215.11|T cell leukemia, homeobox 1
mm39_v1_chr1_-_5140504_5140511	0.738973	Sox2	ENSMUST00000147158.2|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20	ENSMUST00000118000.8|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20
mm39_v1_chr14_+_26760898_26760951	0.737847	Sox2	ENSMUST00000035336.5|Il17rd|ENSMUSG00000040717.7|interleukin 17 receptor D
mm39_v1_chr19_-_28657477_28657523	0.735667	Sox2	ENSMUST00000162022.8|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3	ENSMUST00000112612.9|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3
mm39_v1_chr15_+_75865604_75865680	0.73324	Sox2	ENSMUST00000089669.6|Mapk15|ENSMUSG00000063704.14|mitogen-activated protein kinase 15
mm39_v1_chr15_+_39255185_39255196	0.73274	Sox2	ENSMUST00000228839.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr7_-_122969064_122969144	0.730567	Sox2	ENSMUST00000207010.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000167309.8|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000205262.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000106442.9|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000098060.5|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17
mm39_v1_chr5_+_91079068_91079170	0.727528	Sox2	ENSMUST00000202781.2|Mthfd2l|ENSMUSG00000029376.9|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	ENSMUST00000071652.6|Mthfd2l|ENSMUSG00000029376.9|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm39_v1_chr6_-_42669963_42670016	0.726386	Sox2	ENSMUST00000045140.5|Tcaf1|ENSMUSG00000036667.15|TRPM8 channel-associated factor 1
mm39_v1_chr11_+_20597149_20597156	0.723053	Sox2	ENSMUST00000109585.2|Sertad2|ENSMUSG00000049800.14|SERTA domain containing 2
mm39_v1_chr2_-_27365633_27365710	0.722521	Sox2	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr6_-_113577606_113577676	0.721615	Sox2	ENSMUST00000035870.5|Fancd2os|ENSMUSG00000033963.17|Fancd2 opposite strand
mm39_v1_chr18_+_37130860_37130933	0.720486	Sox2	ENSMUST00000115659.6|Pcdha9|ENSMUSG00000103770.2|protocadherin alpha 9
mm39_v1_chr11_-_74480870_74481012	0.715423	Sox2	ENSMUST00000145524.2|Rap1gap2|ENSMUSG00000038807.20|RAP1 GTPase activating protein 2	ENSMUST00000102521.9|Rap1gap2|ENSMUSG00000038807.20|RAP1 GTPase activating protein 2
mm39_v1_chr14_+_66208059_66208070	0.714906	Sox2	ENSMUST00000127387.8|Clu|ENSMUSG00000022037.16|clusterin
mm39_v1_chr9_+_55057334_55057369	0.713207	Sox2	ENSMUST00000122441.2|Ube2q2|ENSMUSG00000032307.17|ubiquitin-conjugating enzyme E2Q family member 2
mm39_v1_chr19_-_45771939_45772000	0.712981	Sox2	ENSMUST00000026243.5|Oga|ENSMUSG00000025220.9|O-GlcNAcase
mm39_v1_chr12_-_110662677_110662700	0.707106	Sox2	ENSMUST00000124156.8|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr4_-_150736554_150736638	0.705112	Sox2	ENSMUST00000117997.2|Slc45a1|ENSMUSG00000039838.12|solute carrier family 45, member 1	ENSMUST00000037827.10|Slc45a1|ENSMUSG00000039838.12|solute carrier family 45, member 1
mm39_v1_chr3_+_65016750_65016838	0.702279	Sox2	ENSMUST00000049230.11|Kcnab1|ENSMUSG00000027827.18|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm39_v1_chr7_+_120581719_120581737	0.700204	Sox2	ENSMUST00000033166.10|Mfsd13b|ENSMUSG00000030877.12|major facilitator superfamily domain containing 13B
mm39_v1_chr13_+_14238361_14238407	0.700122	Sox2	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr17_-_34337446_34337475	0.696775	Sox2	ENSMUST00000095347.13|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr2_+_18681812_18681842	0.695948	Sox2	ENSMUST00000028071.13|Bmi1|ENSMUSG00000026739.14|Bmi1 polycomb ring finger oncogene
mm39_v1_chr5_+_34706936_34707032	0.692989	Sox2	ENSMUST00000179943.3|Sh3bp2|ENSMUSG00000054520.16|SH3-domain binding protein 2
mm39_v1_chr16_+_17945471_17945513	0.69257	Sox2	ENSMUST00000059589.6|Rtn4r|ENSMUSG00000043811.6|reticulon 4 receptor
mm39_v1_chr8_-_68427217_68427248	0.690827	Sox2	ENSMUST00000098696.10|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000038959.16|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3	ENSMUST00000093469.11|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr8_-_78451055_78451113	0.690648	Sox2	ENSMUST00000034029.8|Ednra|ENSMUSG00000031616.8|endothelin receptor type A
mm39_v1_chr18_+_37651393_37651412	0.689095	Sox2	ENSMUST00000097609.3|Pcdhb22|ENSMUSG00000073591.5|protocadherin beta 22
mm39_v1_chr6_-_138399896_138399997	0.688206	Sox2	ENSMUST00000161450.8|Lmo3|ENSMUSG00000030226.13|LIM domain only 3	ENSMUST00000163024.8|Lmo3|ENSMUSG00000030226.13|LIM domain only 3	ENSMUST00000162185.8|Lmo3|ENSMUSG00000030226.13|LIM domain only 3
mm39_v1_chr6_+_119456629_119456768	0.684906	Sox2	ENSMUST00000032094.7|Fbxl14|ENSMUSG00000030019.7|F-box and leucine-rich repeat protein 14
mm39_v1_chr2_-_119101680_119101753	0.683595	Sox2	ENSMUST00000037360.8|Rhov|ENSMUSG00000034226.8|ras homolog family member V
mm39_v1_chr14_-_18054325_18054325	0.682949	Sox2	ENSMUST00000168866.2|Gm3164|ENSMUSG00000091418.3|predicted gene 3164
mm39_v1_chr18_+_24603888_24603952	0.681696	Sox2	ENSMUST00000097646.5|2700062C07Rik|ENSMUSG00000024273.9|RIKEN cDNA 2700062C07 gene
mm39_v1_chr6_+_106095726_106095967	0.680537	Sox2	ENSMUST00000113258.8|Cntn4|ENSMUSG00000064293.15|contactin 4	ENSMUST00000079416.6|Cntn4|ENSMUSG00000064293.15|contactin 4
mm39_v1_chr5_+_96521814_96521814	0.680293	Sox2	ENSMUST00000036019.5|Fras1|ENSMUSG00000034687.9|Fraser extracellular matrix complex subunit 1
mm39_v1_chr10_-_62628008_62628070	0.679949	Sox2	ENSMUST00000217768.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000020268.7|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000218946.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000219527.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1
mm39_v1_chr6_+_132832401_132832401	0.67982	Sox2	ENSMUST00000032315.3|Tas2r116|ENSMUSG00000030194.3|taste receptor, type 2, member 116
mm39_v1_chr18_-_61919707_61919773	0.679033	Sox2	ENSMUST00000120472.2|Afap1l1|ENSMUSG00000033032.16|actin filament associated protein 1-like 1
mm39_v1_chr13_+_50797264_50797264	0.678224	Sox2	ENSMUST00000099519.2|Gm904|ENSMUSG00000096641.8|predicted gene 904
mm39_v1_chr11_-_117670430_117670476	0.677413	Sox2	ENSMUST00000143406.8|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6
mm39_v1_chr9_+_69896748_69896821	0.675159	Sox2	ENSMUST00000034754.12|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000085393.13|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000117450.8|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2
mm39_v1_chr11_+_20581952_20582006	0.672727	Sox2	ENSMUST00000109586.3|Sertad2|ENSMUSG00000049800.14|SERTA domain containing 2
mm39_v1_chr6_+_51447490_51447510	0.671811	Sox2	ENSMUST00000031862.14|Cbx3|ENSMUSG00000029836.16|chromobox 3
mm39_v1_chr14_+_52904815_52904868	0.671473	Sox2	ENSMUST00000198058.2|Trav6-2|ENSMUSG00000076764.4|T cell receptor alpha variable 6-2	ENSMUST00000103573.3|Trav6-2|ENSMUSG00000076764.4|T cell receptor alpha variable 6-2
mm39_v1_chr1_-_139304779_139304816	0.671077	Sox2	ENSMUST00000196402.5|Crb1|ENSMUSG00000063681.15|crumbs family member 1, photoreceptor morphogenesis associated	ENSMUST00000059825.12|Crb1|ENSMUSG00000063681.15|crumbs family member 1, photoreceptor morphogenesis associated
mm39_v1_chr4_-_118036827_118036879	0.670779	Sox2	ENSMUST00000097911.9|Kdm4a|ENSMUSG00000033326.16|lysine (K)-specific demethylase 4A
mm39_v1_chr2_+_174852034_174852112	0.670529	Sox2	ENSMUST00000109069.8|Gm14444|ENSMUSG00000078906.10|predicted gene 14444	ENSMUST00000109070.3|Gm14444|ENSMUSG00000078906.10|predicted gene 14444
mm39_v1_chr7_+_29007349_29007483	0.667943	Sox2	ENSMUST00000108230.8|Dpf1|ENSMUSG00000030584.15|D4, zinc and double PHD fingers family 1	ENSMUST00000065181.12|Dpf1|ENSMUSG00000030584.15|D4, zinc and double PHD fingers family 1
mm39_v1_chr3_+_95018324_95018398	0.663464	Sox2	ENSMUST00000009102.9|Vps72|ENSMUSG00000008958.15|vacuolar protein sorting 72
mm39_v1_chr12_-_69403892_69403956	0.658505	Sox2	ENSMUST00000222065.2|Nemf|ENSMUSG00000020982.10|nuclear export mediator factor	ENSMUST00000021368.10|Nemf|ENSMUSG00000020982.10|nuclear export mediator factor
mm39_v1_chr1_+_172784335_172784335	0.654315	Sox2	ENSMUST00000038432.7|Olfr16|ENSMUSG00000037924.7|olfactory receptor 16
mm39_v1_chr4_-_36136463_36136463	0.651551	Sox2	ENSMUST00000098151.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr11_-_70111796_70111890	0.651518	Sox2	ENSMUST00000060010.3|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13	ENSMUST00000190533.2|Slc16a13|ENSMUSG00000044367.8|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm39_v1_chr18_+_37488174_37488324	0.651407	Sox2	ENSMUST00000192867.2|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8	ENSMUST00000051163.3|Pcdhb8|ENSMUSG00000045876.5|protocadherin beta 8
mm39_v1_chr9_+_96141299_96141314	0.651364	Sox2	ENSMUST00000179065.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr8_-_36716445_36716670	0.651011	Sox2	ENSMUST00000239119.2|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1	ENSMUST00000065297.6|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1
mm39_v1_chr18_+_56840813_56841028	0.650333	Sox2	ENSMUST00000025486.9|Lmnb1|ENSMUSG00000024590.9|lamin B1
mm39_v1_chr18_+_37813286_37813360	0.649679	Sox2	ENSMUST00000192931.2|Pcdhgb1|ENSMUSG00000103037.2|protocadherin gamma subfamily B, 1
mm39_v1_chr14_+_54431947_54431947	0.645246	Sox2	ENSMUST00000103715.2|Traj26|ENSMUSG00000076903.2|T cell receptor alpha joining 26
mm39_v1_chrX_+_161684735_161684866	0.643852	Sox2	ENSMUST00000112302.8|Ctps2|ENSMUSG00000031360.15|cytidine 5'-triphosphate synthase 2	ENSMUST00000112301.8|Ctps2|ENSMUSG00000031360.15|cytidine 5'-triphosphate synthase 2
mm39_v1_chr2_+_90817948_90818091	0.639663	Sox2	ENSMUST00000111452.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111455.9|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr18_+_37630044_37630044	0.639208	Sox2	ENSMUST00000059571.7|Pcdhb19|ENSMUSG00000043313.7|protocadherin beta 19
mm39_v1_chr18_+_50411431_50411471	0.637854	Sox2	ENSMUST00000039121.4|Fam170a|ENSMUSG00000035420.8|family with sequence similarity 170, member A	ENSMUST00000238078.2|Fam170a|ENSMUSG00000035420.8|family with sequence similarity 170, member A
mm39_v1_chr15_-_88838605_88838631	0.637361	Sox2	ENSMUST00000109371.8|Ttll8|ENSMUSG00000022388.15|tubulin tyrosine ligase-like family, member 8
mm39_v1_chr18_+_24338358_24338406	0.637237	Sox2	ENSMUST00000000430.14|Galnt1|ENSMUSG00000000420.16|polypeptide N-acetylgalactosaminyltransferase 1
mm39_v1_chr10_+_39488930_39488930	0.636652	Sox2	ENSMUST00000019987.7|Traf3ip2|ENSMUSG00000019842.7|TRAF3 interacting protein 2
mm39_v1_chr3_-_141874955_141875023	0.634222	Sox2	ENSMUST00000098568.8|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr7_+_140261864_140261864	0.631341	Sox2	ENSMUST00000214637.3|Olfr45|ENSMUSG00000066122.7|olfactory receptor 45
mm39_v1_chr15_-_71906051_71906076	0.631066	Sox2	ENSMUST00000159993.8|Col22a1|ENSMUSG00000079022.11|collagen, type XXII, alpha 1
mm39_v1_chr17_+_80514889_80514946	0.629159	Sox2	ENSMUST00000134652.2|Ttc39d|ENSMUSG00000046196.5|tetratricopeptide repeat domain 39D
mm39_v1_chr17_+_20639425_20639425	0.625613	Sox2	ENSMUST00000170076.2|Vmn1r224|ENSMUSG00000091151.3|vomeronasal 1 receptor 224
mm39_v1_chr3_-_144511566_144511566	0.62414	Sox2	ENSMUST00000199029.2|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr1_+_36753607_36753656	0.622453	Sox2	ENSMUST00000208994.2|4933424G06Rik|ENSMUSG00000102416.5|RIKEN cDNA 4933424G06 gene
mm39_v1_chr11_-_50183129_50183191	0.617029	Sox2	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr19_+_5012336_5012360	0.615754	Sox2	ENSMUST00000237974.2|Mrpl11|ENSMUSG00000024902.6|mitochondrial ribosomal protein L11
mm39_v1_chr2_-_128890092_128890092	0.613061	Sox2	ENSMUST00000145798.4|Vinac1|ENSMUSG00000079051.6|vinculin/alpha-catenin family member 1
mm39_v1_chr9_-_116004265_116004333	0.611133	Sox2	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr10_+_80015316_80015375	0.607791	Sox2	ENSMUST00000003154.7|Efna2|ENSMUSG00000003070.7|ephrin A2
mm39_v1_chr15_+_88635852_88635863	0.607454	Sox2	ENSMUST00000041297.15|Zbed4|ENSMUSG00000034333.16|zinc finger, BED type containing 4
mm39_v1_chr14_+_53995108_53995108	0.606108	Sox2	ENSMUST00000184905.2|Trav13-4-dv7|ENSMUSG00000094562.6|T cell receptor alpha variable 13-4-DV7
mm39_v1_chr14_-_33169099_33169138	0.604981	Sox2	ENSMUST00000111944.10|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000022504.12|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000111945.9|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8
mm39_v1_chr11_+_43419586_43419623	0.602256	Sox2	ENSMUST00000050574.7|Ccnjl|ENSMUSG00000044707.8|cyclin J-like
mm39_v1_chr11_+_3438274_3438287	0.599943	Sox2	ENSMUST00000064265.13|Pla2g3|ENSMUSG00000034579.18|phospholipase A2, group III
mm39_v1_chr14_-_16968099_16968099	0.596586	Sox2	ENSMUST00000181562.8|Gm3488|ENSMUSG00000095295.9|predicted gene, 3488
mm39_v1_chr1_+_187995096_187995231	0.595151	Sox2	ENSMUST00000060479.14|Ush2a|ENSMUSG00000026609.16|usherin
mm39_v1_chr1_-_87083848_87083887	0.593374	Sox2	ENSMUST00000160810.2|Ecel1|ENSMUSG00000026247.14|endothelin converting enzyme-like 1
mm39_v1_chr4_+_109092829_109092829	0.591973	Sox2	ENSMUST00000030285.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr19_-_56810593_56810654	0.591027	Sox2	ENSMUST00000118592.8|Ccdc186|ENSMUSG00000035173.15|coiled-coil domain containing 186
mm39_v1_chr5_+_114203518_114203575	0.582688	Sox2	ENSMUST00000202603.4|Usp30|ENSMUSG00000029592.12|ubiquitin specific peptidase 30
mm39_v1_chr17_+_35354655_35354774	0.578878	Sox2	ENSMUST00000174478.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000174281.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173550.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr14_+_15295240_15295240	0.578366	Sox2	ENSMUST00000172431.8|Gm3512|ENSMUSG00000090363.9|predicted gene 3512
mm39_v1_chr17_-_26099832_26099832	0.57489	Sox2	ENSMUST00000176696.3|Wfikkn1|ENSMUSG00000071192.7|WAP, FS, Ig, KU, and NTR-containing protein 1
mm39_v1_chr17_-_32503107_32503137	0.570686	Sox2	ENSMUST00000237692.2|Brd4|ENSMUSG00000024002.19|bromodomain containing 4
mm39_v1_chr19_+_5524933_5524966	0.570212	Sox2	ENSMUST00000236518.2|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm39_v1_chr1_-_92107971_92108063	0.567556	Sox2	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr6_+_48578935_48578997	0.563654	Sox2	ENSMUST00000204095.3|Zfp775|ENSMUSG00000007216.7|zinc finger protein 775
mm39_v1_chr4_+_32238950_32238964	0.562112	Sox2	ENSMUST00000037416.13|Bach2|ENSMUSG00000040270.17|BTB and CNC homology, basic leucine zipper transcription factor 2
mm39_v1_chr13_+_49646794_49646794	0.560973	Sox2	ENSMUST00000222404.2|Tes3-ps|ENSMUSG00000113255.2|testis derived transcript 3, pseudogene
mm39_v1_chr7_+_119499322_119499331	0.560782	Sox2	ENSMUST00000106516.2|Lyrm1|ENSMUSG00000030922.13|LYR motif containing 1
mm39_v1_chr7_+_16043502_16043567	0.556394	Sox2	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr19_+_8919228_8919413	0.552622	Sox2	ENSMUST00000096240.3|Mta2|ENSMUSG00000071646.10|metastasis-associated gene family, member 2
mm39_v1_chr18_+_37554471_37554508	0.550441	Sox2	ENSMUST00000053073.6|Pcdhb11|ENSMUSG00000051486.6|protocadherin beta 11
mm39_v1_chr3_-_36667434_36667517	0.550378	Sox2	ENSMUST00000108155.8|Bbs7|ENSMUSG00000037325.11|Bardet-Biedl syndrome 7 (human)
mm39_v1_chr5_+_34706911_34706925	0.548737	Sox2	ENSMUST00000118545.8|Sh3bp2|ENSMUSG00000054520.16|SH3-domain binding protein 2
mm39_v1_chr9_+_96141317_96141338	0.546704	Sox2	ENSMUST00000165768.4|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr4_+_112414391_112414391	0.545075	Sox2	ENSMUST00000106560.10|Skint2|ENSMUSG00000034359.17|selection and upkeep of intraepithelial T cells 2
mm39_v1_chr10_+_42736644_42736673	0.543523	Sox2	ENSMUST00000105495.8|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr18_+_60936910_60936928	0.543156	Sox2	ENSMUST00000097563.9|Cd74|ENSMUSG00000024610.16|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	ENSMUST00000050487.16|Cd74|ENSMUSG00000024610.16|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	ENSMUST00000167610.2|Cd74|ENSMUSG00000024610.16|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
mm39_v1_chr6_-_54941673_54941696	0.54166	Sox2	ENSMUST00000203837.2|Nod1|ENSMUSG00000038058.15|nucleotide-binding oligomerization domain containing 1
mm39_v1_chr10_+_44943262_44943375	0.541656	Sox2	ENSMUST00000099858.4|Prep|ENSMUSG00000019849.12|prolyl endopeptidase
mm39_v1_chr6_-_69678271_69678328	0.541624	Sox2	ENSMUST00000103363.2|Igkv4-50|ENSMUSG00000076562.2|immunoglobulin kappa variable 4-50
mm39_v1_chr7_+_5060159_5060199	0.541505	Sox2	ENSMUST00000045543.8|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106
mm39_v1_chr1_+_17215581_17215655	0.541206	Sox2	ENSMUST00000026879.8|Gdap1|ENSMUSG00000025777.9|ganglioside-induced differentiation-associated-protein 1
mm39_v1_chr6_-_52160816_52160837	0.539992	Sox2	ENSMUST00000134831.2|Hoxa3|ENSMUSG00000079560.14|homeobox A3
mm39_v1_chr7_-_16409542_16409630	0.536587	Sox2	ENSMUST00000108498.3|Ceacam15|ENSMUSG00000078795.3|carcinoembryonic antigen-related cell adhesion molecule 15
mm39_v1_chr11_+_93935066_93935100	0.534887	Sox2	ENSMUST00000103168.10|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr3_-_123484499_123484510	0.531617	Sox2	ENSMUST00000154668.8|Ndst3|ENSMUSG00000027977.16|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm39_v1_chr15_-_99864936_99864947	0.530834	Sox2	ENSMUST00000100209.6|Fam186a|ENSMUSG00000045350.16|family with sequence similarity 186, member A
mm39_v1_chr10_+_128295159_128295197	0.527909	Sox2	ENSMUST00000026433.9|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000099131.11|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000105235.10|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm39_v1_chr11_-_98220466_98220482	0.523289	Sox2	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr2_+_131792931_131792957	0.521795	Sox2	ENSMUST00000110169.2|Prnd|ENSMUSG00000027338.17|prion like protein doppel
mm39_v1_chr6_-_120470768_120470874	0.521314	Sox2	ENSMUST00000178687.2|Tmem121b|ENSMUSG00000094626.2|transmembrane protein 121B
mm39_v1_chr9_-_107749947_107749980	0.519842	Sox2	ENSMUST00000195866.6|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chr17_-_71160477_71160543	0.519376	Sox2	ENSMUST00000118283.8|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr10_+_115405891_115405927	0.517217	Sox2	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr17_+_57665691_57665721	0.51576	Sox2	ENSMUST00000086763.13|Adgre1|ENSMUSG00000004730.16|adhesion G protein-coupled receptor E1	ENSMUST00000233376.2|Adgre1|ENSMUSG00000004730.16|adhesion G protein-coupled receptor E1	ENSMUST00000233840.2|Adgre1|ENSMUSG00000004730.16|adhesion G protein-coupled receptor E1	ENSMUST00000232808.2|Adgre1|ENSMUSG00000004730.16|adhesion G protein-coupled receptor E1	ENSMUST00000004850.8|Adgre1|ENSMUSG00000004730.16|adhesion G protein-coupled receptor E1
mm39_v1_chr12_+_25024913_25024992	0.509814	Sox2	ENSMUST00000066652.7|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000220459.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000222941.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220
mm39_v1_chr11_-_18968979_18968990	0.507464	Sox2	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr7_-_142215027_142215050	0.505536	Sox2	ENSMUST00000105936.8|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr11_+_96214078_96214152	0.501708	Sox2	ENSMUST00000093944.10|Hoxb3|ENSMUSG00000048763.12|homeobox B3
mm39_v1_chr1_-_168259070_168259085	0.500915	Sox2	ENSMUST00000064438.11|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chr16_+_25620652_25620678	0.499174	Sox2	ENSMUST00000115304.8|Trp63|ENSMUSG00000022510.15|transformation related protein 63	ENSMUST00000115305.2|Trp63|ENSMUSG00000022510.15|transformation related protein 63	ENSMUST00000040231.13|Trp63|ENSMUSG00000022510.15|transformation related protein 63	ENSMUST00000115306.8|Trp63|ENSMUSG00000022510.15|transformation related protein 63
mm39_v1_chr18_+_37646674_37646674	0.498326	Sox2	ENSMUST00000061405.6|Pcdhb21|ENSMUSG00000044022.6|protocadherin beta 21
mm39_v1_chr10_-_10956700_10956767	0.498181	Sox2	ENSMUST00000105560.2|Grm1|ENSMUSG00000019828.14|glutamate receptor, metabotropic 1
mm39_v1_chr5_+_74696110_74696185	0.495682	Sox2	ENSMUST00000080164.12|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113536.8|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113534.9|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113535.9|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000120618.6|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)
mm39_v1_chr15_+_25774070_25774130	0.49421	Sox2	ENSMUST00000125667.3|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr11_+_5738480_5738560	0.492937	Sox2	ENSMUST00000109845.8|Dbnl|ENSMUSG00000020476.15|drebrin-like	ENSMUST00000020769.14|Dbnl|ENSMUSG00000020476.15|drebrin-like	ENSMUST00000102928.5|Dbnl|ENSMUSG00000020476.15|drebrin-like
mm39_v1_chr9_+_50679528_50679570	0.490731	Sox2	ENSMUST00000042391.13|Fdxacb1|ENSMUSG00000037845.15|ferredoxin-fold anticodon binding domain containing 1
mm39_v1_chr5_+_139238089_139238145	0.489879	Sox2	ENSMUST00000130326.8|Get4|ENSMUSG00000025858.13|golgi to ER traffic protein 4
mm39_v1_chr16_-_32617783_32617833	0.483886	Sox2	ENSMUST00000115116.8|Muc20|ENSMUSG00000035638.15|mucin 20	ENSMUST00000041123.9|Muc20|ENSMUSG00000035638.15|mucin 20
mm39_v1_chr14_+_53601293_53601293	0.483338	Sox2	ENSMUST00000103634.3|Trav13n-4|ENSMUSG00000076823.4|T cell receptor alpha variable 13N-4
mm39_v1_chr10_-_81463091_81463154	0.482958	Sox2	ENSMUST00000143424.2|Sirt6|ENSMUSG00000034748.17|sirtuin 6	ENSMUST00000119324.8|Sirt6|ENSMUSG00000034748.17|sirtuin 6
mm39_v1_chr2_+_179666744_179666800	0.482407	Sox2	ENSMUST00000055485.12|Lsm14b|ENSMUSG00000039108.15|LSM family member 14B
mm39_v1_chr13_-_93281065_93281232	0.481525	Sox2	ENSMUST00000062122.4|Cmya5|ENSMUSG00000047419.6|cardiomyopathy associated 5
mm39_v1_chr10_-_4338032_4338108	0.479564	Sox2	ENSMUST00000100078.10|Zbtb2|ENSMUSG00000075327.11|zinc finger and BTB domain containing 2
mm39_v1_chr9_-_121825028_121825107	0.478674	Sox2	ENSMUST00000216669.2|Pomgnt2|ENSMUSG00000066235.8|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	ENSMUST00000215084.2|Pomgnt2|ENSMUSG00000066235.8|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	ENSMUST00000214533.2|Pomgnt2|ENSMUSG00000066235.8|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	ENSMUST00000217610.2|Pomgnt2|ENSMUSG00000066235.8|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	ENSMUST00000084743.7|Pomgnt2|ENSMUSG00000066235.8|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
mm39_v1_chr7_+_79674562_79674589	0.477933	Sox2	ENSMUST00000164056.9|Zfp710|ENSMUSG00000048897.16|zinc finger protein 710	ENSMUST00000166250.8|Zfp710|ENSMUSG00000048897.16|zinc finger protein 710
mm39_v1_chr7_-_26895561_26895696	0.476219	Sox2	ENSMUST00000122202.8|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000080356.10|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr8_-_13304096_13304119	0.474871	Sox2	ENSMUST00000171619.2|Adprhl1|ENSMUSG00000031448.13|ADP-ribosylhydrolase like 1
mm39_v1_chr10_+_76284907_76284943	0.472494	Sox2	ENSMUST00000092406.12|2610028H24Rik|ENSMUSG00000009114.18|RIKEN cDNA 2610028H24 gene
mm39_v1_chr16_+_27207722_27207748	0.472462	Sox2	ENSMUST00000039443.14|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50	ENSMUST00000096127.11|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50
mm39_v1_chr12_+_69343450_69343574	0.470668	Sox2	ENSMUST00000021362.5|Klhdc2|ENSMUSG00000020978.11|kelch domain containing 2
mm39_v1_chr14_+_60615690_60615741	0.470318	Sox2	ENSMUST00000239079.2|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr5_+_88731386_88731449	0.466423	Sox2	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr19_-_40576817_40576870	0.464673	Sox2	ENSMUST00000175932.2|Aldh18a1|ENSMUSG00000025007.14|aldehyde dehydrogenase 18 family, member A1	ENSMUST00000176955.8|Aldh18a1|ENSMUSG00000025007.14|aldehyde dehydrogenase 18 family, member A1	ENSMUST00000149476.3|Aldh18a1|ENSMUSG00000025007.14|aldehyde dehydrogenase 18 family, member A1
mm39_v1_chr2_-_84652890_84652996	0.464103	Sox2	ENSMUST00000028471.6|Smtnl1|ENSMUSG00000027077.8|smoothelin-like 1
mm39_v1_chr1_-_34882068_34882122	0.464072	Sox2	ENSMUST00000185231.2|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000191307.7|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr3_+_94269745_94269745	0.461966	Sox2	ENSMUST00000169433.3|C2cd4d|ENSMUSG00000091648.3|C2 calcium-dependent domain containing 4D
mm39_v1_chr11_+_59995878_59996003	0.460511	Sox2	ENSMUST00000132012.2|Rai1|ENSMUSG00000062115.16|retinoic acid induced 1
mm39_v1_chr2_+_55327110_55327194	0.455129	Sox2	ENSMUST00000112633.3|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3	ENSMUST00000112632.2|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr12_-_114117264_114117344	0.444698	Sox2	ENSMUST00000103461.5|Ighv7-3|ENSMUSG00000076652.5|immunoglobulin heavy variable 7-3
mm39_v1_chr2_+_89821565_89821582	0.443115	Sox2	ENSMUST00000111509.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261	ENSMUST00000213909.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr5_-_136273691_136273780	0.442219	Sox2	ENSMUST00000196447.2|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2	ENSMUST00000196397.5|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2	ENSMUST00000005188.14|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2
mm39_v1_chr11_+_42312150_42312177	0.442106	Sox2	ENSMUST00000192403.2|Gabrb2|ENSMUSG00000007653.13|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm39_v1_chr12_+_38830812_38830847	0.440508	Sox2	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr14_+_69409251_69409414	0.438729	Sox2	ENSMUST00000062437.10|Nkx2-6|ENSMUSG00000044186.11|NK2 homeobox 6
mm39_v1_chr5_-_18040647_18040709	0.437552	Sox2	ENSMUST00000082367.13|Cd36|ENSMUSG00000002944.16|CD36 molecule
mm39_v1_chr3_-_127019496_127019608	0.435792	Sox2	ENSMUST00000182064.9|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain	ENSMUST00000182452.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr10_+_89709360_89709534	0.435111	Sox2	ENSMUST00000183156.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000182936.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000099368.11|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr1_+_171077984_171078002	0.433597	Sox2	ENSMUST00000111315.9|Adamts4|ENSMUSG00000006403.14|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	ENSMUST00000219033.2|Adamts4|ENSMUSG00000006403.14|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm39_v1_chr14_-_35533922_35533955	0.43309	Sox2	ENSMUST00000043266.7|4930596D02Rik|ENSMUSG00000041068.7|RIKEN cDNA 4930596D02 gene
mm39_v1_chr15_-_76259126_76259141	0.433072	Sox2	ENSMUST00000071119.8|Tssk5|ENSMUSG00000060794.9|testis-specific serine kinase 5
mm39_v1_chr14_+_51162425_51162463	0.430443	Sox2	ENSMUST00000049411.12|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1	ENSMUST00000136753.8|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1	ENSMUST00000154288.3|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1
mm39_v1_chr17_+_44112679_44112753	0.427875	Sox2	ENSMUST00000229744.2|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chrX_+_11175063_11175063	0.426626	Sox2	ENSMUST00000178595.2|H2al1d|ENSMUSG00000094904.2|H2A histone family member L1D
mm39_v1_chr5_+_52521133_52521322	0.426184	Sox2	ENSMUST00000101208.6|Sod3|ENSMUSG00000072941.6|superoxide dismutase 3, extracellular
mm39_v1_chr8_-_47805383_47805401	0.424864	Sox2	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr10_+_79889863_79889877	0.424362	Sox2	ENSMUST00000097227.11|Gpx4|ENSMUSG00000075706.12|glutathione peroxidase 4
mm39_v1_chr17_-_71153283_71153321	0.422885	Sox2	ENSMUST00000156484.2|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr16_-_15681145_15681203	0.422484	Sox2	ENSMUST00000229680.2|Mzt2|ENSMUSG00000022671.14|mitotic spindle organizing protein 2
mm39_v1_chr17_-_18104182_18104216	0.419844	Sox2	ENSMUST00000061516.8|Fpr1|ENSMUSG00000045551.8|formyl peptide receptor 1
mm39_v1_chr10_+_90412570_90412628	0.41643	Sox2	ENSMUST00000182430.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000182960.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000182045.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000182083.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr7_-_19595221_19595224	0.412162	Sox2	ENSMUST00000014830.8|Ceacam16|ENSMUSG00000014686.9|carcinoembryonic antigen-related cell adhesion molecule 16
mm39_v1_chr9_+_20554586_20554638	0.411916	Sox2	ENSMUST00000129414.9|Ubl5|ENSMUSG00000084786.10|ubiquitin-like 5
mm39_v1_chr7_+_140547134_140547280	0.409974	Sox2	ENSMUST00000106042.9|Ifitm1|ENSMUSG00000025491.15|interferon induced transmembrane protein 1
mm39_v1_chr11_-_11987391_11987407	0.409705	Sox2	ENSMUST00000093321.12|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chr12_-_99378855_99378870	0.409033	Sox2	ENSMUST00000177269.2|Foxn3|ENSMUSG00000033713.13|forkhead box N3
mm39_v1_chr15_+_30457772_30457856	0.408428	Sox2	ENSMUST00000228282.2|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr19_-_11301919_11302002	0.407159	Sox2	ENSMUST00000159269.2|Ms4a7|ENSMUSG00000024672.12|membrane-spanning 4-domains, subfamily A, member 7
mm39_v1_chr2_-_131194754_131194806	0.401699	Sox2	ENSMUST00000059372.11|Rnf24|ENSMUSG00000048911.16|ring finger protein 24
mm39_v1_chr4_+_45203914_45203931	0.399491	Sox2	ENSMUST00000107804.2|Frmpd1|ENSMUSG00000035615.13|FERM and PDZ domain containing 1
mm39_v1_chr7_+_5059855_5059930	0.396742	Sox2	ENSMUST00000208161.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106	ENSMUST00000207215.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106
mm39_v1_chr8_+_72662437_72662501	0.395345	Sox2	ENSMUST00000110002.8|Zfp882|ENSMUSG00000089857.10|zinc finger protein 882	ENSMUST00000131544.8|Zfp617|ENSMUSG00000066880.16|zinc finger protein 617	ENSMUST00000125802.8|Zfp882|ENSMUSG00000089857.10|zinc finger protein 882
mm39_v1_chr6_-_100264439_100264461	0.393755	Sox2	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr1_-_180641159_180641197	0.392874	Sox2	ENSMUST00000162118.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000159685.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000161308.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr5_-_24782465_24782486	0.389308	Sox2	ENSMUST00000030795.10|Abcf2|ENSMUSG00000028953.11|ATP-binding cassette, sub-family F (GCN20), member 2
mm39_v1_chr13_+_16189041_16189060	0.388568	Sox2	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr16_-_85347305_85347321	0.38803	Sox2	ENSMUST00000175700.8|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1	ENSMUST00000114174.3|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1
mm39_v1_chrX_-_16777913_16778013	0.387058	Sox2	ENSMUST00000040134.8|Ndp|ENSMUSG00000040138.8|Norrie disease (pseudoglioma) (human)
mm39_v1_chr9_+_95519654_95519685	0.385048	Sox2	ENSMUST00000015498.9|Pcolce2|ENSMUSG00000015354.9|procollagen C-endopeptidase enhancer 2
mm39_v1_chr1_+_171158979_171158994	0.382721	Sox2	ENSMUST00000097467.8|Dedd|ENSMUSG00000013973.13|death effector domain-containing
mm39_v1_chr4_-_129556234_129556282	0.382251	Sox2	ENSMUST00000003828.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr7_-_126182695_126182753	0.382246	Sox2	ENSMUST00000125508.8|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	ENSMUST00000147086.2|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	ENSMUST00000150587.8|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm39_v1_chr9_+_59524521_59524569	0.382024	Sox2	ENSMUST00000026267.16|Parp6|ENSMUSG00000025237.17|poly (ADP-ribose) polymerase family, member 6	ENSMUST00000050483.15|Parp6|ENSMUSG00000025237.17|poly (ADP-ribose) polymerase family, member 6
mm39_v1_chr4_+_106768714_106768864	0.377178	Sox2	ENSMUST00000072753.13|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000097934.10|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr6_-_69835868_69835916	0.37551	Sox2	ENSMUST00000103369.2|Igkv12-41|ENSMUSG00000095007.2|immunoglobulin kappa chain variable 12-41
mm39_v1_chr4_-_152402915_152403111	0.375124	Sox2	ENSMUST00000170820.3|Rnf207|ENSMUSG00000058498.13|ring finger protein 207	ENSMUST00000076183.12|Rnf207|ENSMUSG00000058498.13|ring finger protein 207
mm39_v1_chr7_-_126194097_126194113	0.373507	Sox2	ENSMUST00000058429.6|Il27|ENSMUSG00000044701.6|interleukin 27
mm39_v1_chr13_-_76091931_76092069	0.372447	Sox2	ENSMUST00000022078.12|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3	ENSMUST00000109606.3|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3
mm39_v1_chr5_-_142803405_142803422	0.370047	Sox2	ENSMUST00000151477.8|Tnrc18|ENSMUSG00000039477.17|trinucleotide repeat containing 18
mm39_v1_chr1_+_11063678_11063702	0.366483	Sox2	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chrX_-_63320543_63320608	0.365134	Sox2	ENSMUST00000114679.2|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4	ENSMUST00000069926.14|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4
mm39_v1_chr1_+_182236728_182236750	0.364914	Sox2	ENSMUST00000117245.2|Trp53bp2|ENSMUSG00000026510.11|transformation related protein 53 binding protein 2
mm39_v1_chr7_-_105436775_105436861	0.364724	Sox2	ENSMUST00000078482.13|Dchs1|ENSMUSG00000036862.16|dachsous cadherin related 1
mm39_v1_chrX_-_101730578_101730578	0.35821	Sox2	ENSMUST00000122154.3|Gm3880|ENSMUSG00000081443.3|predicted pseudogene 3880
mm39_v1_chr3_+_95532282_95532332	0.35804	Sox2	ENSMUST00000058230.13|Ensa|ENSMUSG00000038619.13|endosulfine alpha	ENSMUST00000037983.6|Ensa|ENSMUSG00000038619.13|endosulfine alpha
mm39_v1_chrX_+_133486391_133486447	0.356295	Sox2	ENSMUST00000113211.8|Rpl36a|ENSMUSG00000079435.10|ribosomal protein L36A
mm39_v1_chr11_+_93935156_93935191	0.339612	Sox2	ENSMUST00000024979.15|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr15_-_65848649_65848655	0.338864	Sox2	ENSMUST00000239034.2|Hhla1|ENSMUSG00000072511.4|HERV-H LTR-associating 1	ENSMUST00000100584.3|Hhla1|ENSMUSG00000072511.4|HERV-H LTR-associating 1
mm39_v1_chr16_+_32096267_32096295	0.337384	Sox2	ENSMUST00000014218.15|Rnf168|ENSMUSG00000014074.18|ring finger protein 168	ENSMUST00000171474.2|Rnf168|ENSMUSG00000014074.18|ring finger protein 168
mm39_v1_chr10_-_129962924_129962924	0.331936	Sox2	ENSMUST00000074161.2|Olfr824|ENSMUSG00000095804.3|olfactory receptor 824
mm39_v1_chr17_+_13440075_13440075	0.329316	Sox2	ENSMUST00000238835.2|Smok2a|ENSMUSG00000073458.3|sperm motility kinase 2A	ENSMUST00000080647.5|Smok2a|ENSMUSG00000073458.3|sperm motility kinase 2A
mm39_v1_chr16_+_43067641_43067673	0.329219	Sox2	ENSMUST00000079441.13|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114691.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr12_+_38831093_38831128	0.329179	Sox2	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr12_-_11258973_11258973	0.326398	Sox2	ENSMUST00000049877.3|Msgn1|ENSMUSG00000047002.3|mesogenin 1
mm39_v1_chr3_-_141875070_141875186	0.321986	Sox2	ENSMUST00000106230.2|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr16_+_17269845_17269903	0.321348	Sox2	ENSMUST00000006293.5|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like	ENSMUST00000231228.2|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like
mm39_v1_chr11_-_107685383_107685555	0.319905	Sox2	ENSMUST00000021066.4|Cacng4|ENSMUSG00000020723.4|calcium channel, voltage-dependent, gamma subunit 4
mm39_v1_chr2_+_85519775_85519775	0.319481	Sox2	ENSMUST00000054868.2|Olfr1008|ENSMUSG00000050603.2|olfactory receptor 1008
mm39_v1_chr5_+_37399284_37399428	0.317637	Sox2	ENSMUST00000202434.4|Crmp1|ENSMUSG00000029121.17|collapsin response mediator protein 1	ENSMUST00000114158.9|Crmp1|ENSMUSG00000029121.17|collapsin response mediator protein 1
mm39_v1_chr1_-_34882131_34882148	0.311289	Sox2	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chrX_-_135769285_135769504	0.309968	Sox2	ENSMUST00000058814.7|Rab9b|ENSMUSG00000043463.7|RAB9B, member RAS oncogene family
mm39_v1_chr7_-_46558754_46558784	0.308301	Sox2	ENSMUST00000209538.2|Tsg101|ENSMUSG00000014402.16|tumor susceptibility gene 101
mm39_v1_chr12_-_114426350_114426365	0.307359	Sox2	ENSMUST00000195037.2|Ighv8-2|ENSMUSG00000102301.2|immunoglobulin heavy variable V8-2
mm39_v1_chr8_+_36561982_36562027	0.302732	Sox2	ENSMUST00000110492.2|Prag1|ENSMUSG00000050271.13|PEAK1 related kinase activating pseudokinase 1
mm39_v1_chr1_+_38037086_38037096	0.301364	Sox2	ENSMUST00000027252.8|Eif5b|ENSMUSG00000026083.13|eukaryotic translation initiation factor 5B
mm39_v1_chr5_-_109372574_109372574	0.300944	Sox2	ENSMUST00000170341.3|Vmn2r14|ENSMUSG00000091059.3|vomeronasal 2, receptor 14
mm39_v1_chr16_-_76169902_76169991	0.29895	Sox2	ENSMUST00000054178.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr4_+_98434930_98434975	0.298496	Sox2	ENSMUST00000102792.10|Patj|ENSMUSG00000061859.18|PATJ, crumbs cell polarity complex component
mm39_v1_chr2_-_28473150_28473201	0.298358	Sox2	ENSMUST00000113889.9|Gtf3c5|ENSMUSG00000026816.15|general transcription factor IIIC, polypeptide 5
mm39_v1_chr10_-_63174801_63174821	0.292699	Sox2	ENSMUST00000020257.13|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000177694.8|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000105442.3|Sirt1|ENSMUSG00000020063.17|sirtuin 1
mm39_v1_chr17_-_29226886_29226937	0.291103	Sox2	ENSMUST00000232723.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr5_+_3978032_3978178	0.289834	Sox2	ENSMUST00000143365.8|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr5_+_148202075_148202115	0.289778	Sox2	ENSMUST00000071878.12|Mtus2|ENSMUSG00000029651.17|microtubule associated tumor suppressor candidate 2
mm39_v1_chr11_-_33793461_33793619	0.288809	Sox2	ENSMUST00000101368.9|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1	ENSMUST00000065970.6|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1	ENSMUST00000109340.9|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1
mm39_v1_chr13_+_51799268_51799342	0.287931	Sox2	ENSMUST00000075853.6|Cks2|ENSMUSG00000062248.6|CDC28 protein kinase regulatory subunit 2
mm39_v1_chr5_-_9775151_9775170	0.287319	Sox2	ENSMUST00000004076.5|Grm3|ENSMUSG00000003974.7|glutamate receptor, metabotropic 3
mm39_v1_chr11_-_88608958_88609022	0.286232	Sox2	ENSMUST00000107908.2|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chrX_-_7765459_7765510	0.285258	Sox2	ENSMUST00000033497.9|Pqbp1|ENSMUSG00000031157.11|polyglutamine binding protein 1
mm39_v1_chr2_-_30364219_30364239	0.282759	Sox2	ENSMUST00000065134.4|Ier5l|ENSMUSG00000089762.4|immediate early response 5-like
mm39_v1_chr8_+_121215155_121215229	0.27974	Sox2	ENSMUST00000034279.16|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr11_+_6366259_6366319	0.278062	Sox2	ENSMUST00000213200.2|Ppia|ENSMUSG00000071866.13|peptidylprolyl isomerase A
mm39_v1_chr19_-_8196196_8196263	0.277044	Sox2	ENSMUST00000113298.9|Slc22a29|ENSMUSG00000075044.15|solute carrier family 22. member 29
mm39_v1_chr2_+_29779227_29779255	0.276802	Sox2	ENSMUST00000123335.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr12_+_29988035_29988058	0.273898	Sox2	ENSMUST00000122328.8|Pxdn|ENSMUSG00000020674.18|peroxidasin	ENSMUST00000118321.3|Pxdn|ENSMUSG00000020674.18|peroxidasin
mm39_v1_chr9_-_20888054_20888077	0.273875	Sox2	ENSMUST00000054197.7|S1pr2|ENSMUSG00000043895.7|sphingosine-1-phosphate receptor 2
mm39_v1_chr4_-_75196485_75196548	0.272855	Sox2	ENSMUST00000030103.9|Dmac1|ENSMUSG00000028398.9|distal membrane arm assembly complex 1
mm39_v1_chr10_-_23112973_23113122	0.272623	Sox2	ENSMUST00000218049.2|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr11_-_114686712_114686729	0.271777	Sox2	ENSMUST00000000206.4|Btbd17|ENSMUSG00000000202.10|BTB (POZ) domain containing 17
mm39_v1_chr14_+_51162635_51162742	0.263468	Sox2	ENSMUST00000128395.2|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1
mm39_v1_chr2_+_153083419_153083524	0.261981	Sox2	ENSMUST00000049863.12|Pofut1|ENSMUSG00000046020.14|protein O-fucosyltransferase 1	ENSMUST00000099192.10|Pofut1|ENSMUSG00000046020.14|protein O-fucosyltransferase 1	ENSMUST00000109794.2|Pofut1|ENSMUSG00000046020.14|protein O-fucosyltransferase 1
mm39_v1_chr12_-_73160181_73160230	0.26089	Sox2	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr1_+_44187007_44187094	0.258973	Sox2	ENSMUST00000027214.4|Ercc5|ENSMUSG00000026048.17|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm39_v1_chr9_+_72600721_72600884	0.25841	Sox2	ENSMUST00000238315.2|Nedd4|ENSMUSG00000032216.16|neural precursor cell expressed, developmentally down-regulated 4
mm39_v1_chr7_+_33720904_33720908	0.258025	Sox2	ENSMUST00000085618.5|Scgb1b27|ENSMUSG00000066583.5|secretoglobin, family 1B, member 27
mm39_v1_chr10_-_89270554_89270640	0.256304	Sox2	ENSMUST00000220071.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3
mm39_v1_chr9_-_44632680_44632781	0.251904	Sox2	ENSMUST00000148929.2|Phldb1|ENSMUSG00000048537.17|pleckstrin homology like domain, family B, member 1	ENSMUST00000123406.8|Phldb1|ENSMUSG00000048537.17|pleckstrin homology like domain, family B, member 1
mm39_v1_chr2_+_167380112_167380130	0.251865	Sox2	ENSMUST00000052631.8|Snai1|ENSMUSG00000042821.8|snail family zinc finger 1
mm39_v1_chr17_-_36015484_36015494	0.247228	Sox2	ENSMUST00000117301.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr1_-_172085977_172086005	0.246519	Sox2	ENSMUST00000111243.2|Atp1a4|ENSMUSG00000007107.7|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm39_v1_chr1_-_135302971_135302983	0.246477	Sox2	ENSMUST00000041240.4|Shisa4|ENSMUSG00000041889.8|shisa family member 4
mm39_v1_chr19_+_9824919_9824926	0.245678	Sox2	ENSMUST00000179814.3|Scgb2a2|ENSMUSG00000096872.3|secretoglobin, family 2A, member 2
mm39_v1_chr2_+_118730823_118730878	0.245266	Sox2	ENSMUST00000151162.2|Bahd1|ENSMUSG00000040007.9|bromo adjacent homology domain containing 1
mm39_v1_chr7_+_140776763_140776847	0.243709	Sox2	ENSMUST00000144008.2|Lrrc56|ENSMUSG00000038637.16|leucine rich repeat containing 56
mm39_v1_chr9_-_102231884_102231898	0.242859	Sox2	ENSMUST00000035129.14|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000085169.12|Ephb1|ENSMUSG00000032537.16|Eph receptor B1	ENSMUST00000149800.3|Ephb1|ENSMUSG00000032537.16|Eph receptor B1
mm39_v1_chr19_+_28967875_28967902	0.240381	Sox2	ENSMUST00000224599.2|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1	ENSMUST00000050148.5|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1
mm39_v1_chr14_+_66208253_66208353	0.239159	Sox2	ENSMUST00000138191.8|Clu|ENSMUSG00000022037.16|clusterin
mm39_v1_chr17_-_35023521_35023542	0.237911	Sox2	ENSMUST00000025223.9|Cyp21a1|ENSMUSG00000024365.10|cytochrome P450, family 21, subfamily a, polypeptide 1
mm39_v1_chr13_+_93440572_93440646	0.237886	Sox2	ENSMUST00000109493.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr4_+_102111936_102111959	0.236572	Sox2	ENSMUST00000106907.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chrX_+_73220858_73220874	0.23656	Sox2	ENSMUST00000010127.12|Tktl1|ENSMUSG00000031397.12|transketolase-like 1
mm39_v1_chr12_+_73333553_73333578	0.235562	Sox2	ENSMUST00000140523.8|Slc38a6|ENSMUSG00000044712.16|solute carrier family 38, member 6	ENSMUST00000126488.8|Slc38a6|ENSMUSG00000044712.16|solute carrier family 38, member 6
mm39_v1_chr7_-_43155118_43155118	0.23378	Sox2	ENSMUST00000168883.2|4931406B18Rik|ENSMUSG00000013353.11|RIKEN cDNA 4931406B18 gene
mm39_v1_chrX_+_101048650_101048681	0.233702	Sox2	ENSMUST00000144753.2|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr3_+_27371206_27371234	0.232592	Sox2	ENSMUST00000174840.2|Tnfsf10|ENSMUSG00000039304.12|tumor necrosis factor (ligand) superfamily, member 10
mm39_v1_chrX_+_143253677_143253677	0.232437	Sox2	ENSMUST00000178233.2|Trpc5os|ENSMUSG00000072934.11|transient receptor potential cation channel, subfamily C, member 5, opposite strand
mm39_v1_chr3_+_122523219_122523384	0.231156	Sox2	ENSMUST00000200389.2|Pde5a|ENSMUSG00000053965.11|phosphodiesterase 5A, cGMP-specific
mm39_v1_chr1_+_92500847_92500847	0.229708	Sox2	ENSMUST00000074859.3|Olfr1413|ENSMUSG00000058904.4|olfactory receptor 1413
mm39_v1_chr6_+_107506678_107506741	0.227736	Sox2	ENSMUST00000049285.10|Lrrn1|ENSMUSG00000034648.10|leucine rich repeat protein 1, neuronal
mm39_v1_chr5_+_88465146_88465171	0.226764	Sox2	ENSMUST00000170832.3|Prol1|ENSMUSG00000064156.9|proline rich, lacrimal 1
mm39_v1_chr7_+_4928784_4928867	0.226008	Sox2	ENSMUST00000057612.9|Ssc5d|ENSMUSG00000035279.9|scavenger receptor cysteine rich family, 5 domains
mm39_v1_chr13_+_15638466_15638565	0.225672	Sox2	ENSMUST00000110510.4|Gli3|ENSMUSG00000021318.16|GLI-Kruppel family member GLI3
mm39_v1_chr10_+_75983285_75983349	0.22402	Sox2	ENSMUST00000020450.4|Slc5a4a|ENSMUSG00000020229.5|solute carrier family 5, member 4a
mm39_v1_chr7_-_34088886_34088904	0.223104	Sox2	ENSMUST00000155256.8|Lsm14a|ENSMUSG00000066568.13|LSM14A mRNA processing body assembly factor
mm39_v1_chr14_-_54815000_54815015	0.221595	Sox2	ENSMUST00000054487.10|Ajuba|ENSMUSG00000022178.12|ajuba LIM protein
mm39_v1_chr6_-_136812377_136812417	0.221176	Sox2	ENSMUST00000203468.2|Smco3|ENSMUSG00000043298.9|single-pass membrane protein with coiled-coil domains 3
mm39_v1_chr5_-_114518520_114518559	0.21923	Sox2	ENSMUST00000001125.6|Kctd10|ENSMUSG00000001098.16|potassium channel tetramerisation domain containing 10
mm39_v1_chr9_+_5298669_5298701	0.218592	Sox2	ENSMUST00000238505.2|Casp1|ENSMUSG00000025888.7|caspase 1
mm39_v1_chr6_+_141470105_141470176	0.21857	Sox2	ENSMUST00000032362.12|Slco1c1|ENSMUSG00000030235.18|solute carrier organic anion transporter family, member 1c1	ENSMUST00000205214.3|Slco1c1|ENSMUSG00000030235.18|solute carrier organic anion transporter family, member 1c1
mm39_v1_chr16_+_19579651_19579804	0.218559	Sox2	ENSMUST00000119468.2|B3gnt5|ENSMUSG00000022686.15|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm39_v1_chr8_-_8711211_8711250	0.217562	Sox2	ENSMUST00000001319.15|Efnb2|ENSMUSG00000001300.17|ephrin B2
mm39_v1_chr5_+_30869193_30869259	0.216182	Sox2	ENSMUST00000088081.11|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5	ENSMUST00000101442.4|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr4_+_155924181_155924219	0.214824	Sox2	ENSMUST00000030947.4|Mxra8|ENSMUSG00000029070.10|matrix-remodelling associated 8
mm39_v1_chr19_-_45772230_45772276	0.212737	Sox2	ENSMUST00000235448.2|Oga|ENSMUSG00000025220.9|O-GlcNAcase
mm39_v1_chr12_-_31763859_31763946	0.212519	Sox2	ENSMUST00000057783.6|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000236002.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000174480.3|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000176710.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22
mm39_v1_chr18_+_76375206_76375245	0.211722	Sox2	ENSMUST00000172198.8|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr1_-_34882045_34882067	0.210331	Sox2	ENSMUST00000170092.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr1_-_21149392_21149467	0.209664	Sox2	ENSMUST00000037998.6|Tram2|ENSMUSG00000041779.6|translocating chain-associating membrane protein 2
mm39_v1_chr4_-_126362372_126362446	0.206784	Sox2	ENSMUST00000097888.10|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1	ENSMUST00000239399.2|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1
mm39_v1_chr2_+_28403084_28403161	0.206526	Sox2	ENSMUST00000135803.8|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr18_+_3382968_3383065	0.206419	Sox2	ENSMUST00000025073.12|Cul2|ENSMUSG00000024231.16|cullin 2
mm39_v1_chr13_-_59841914_59841922	0.204499	Sox2	ENSMUST00000061597.7|4921517D22Rik|ENSMUSG00000049902.7|RIKEN cDNA 4921517D22 gene
mm39_v1_chr9_+_106331041_106331110	0.204293	Sox2	ENSMUST00000024260.14|Pcbp4|ENSMUSG00000023495.14|poly(rC) binding protein 4	ENSMUST00000216379.2|Pcbp4|ENSMUSG00000023495.14|poly(rC) binding protein 4	ENSMUST00000215656.2|Pcbp4|ENSMUSG00000023495.14|poly(rC) binding protein 4	ENSMUST00000214252.2|Pcbp4|ENSMUSG00000023495.14|poly(rC) binding protein 4
mm39_v1_chr10_+_74896383_74896461	0.200012	Sox2	ENSMUST00000164107.3|Bcr|ENSMUSG00000009681.11|BCR activator of RhoGEF and GTPase
mm39_v1_chr10_+_123099945_123099981	0.197261	Sox2	ENSMUST00000238972.2|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2	ENSMUST00000050756.8|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2
mm39_v1_chr3_+_27371168_27371177	0.196372	Sox2	ENSMUST00000046383.12|Tnfsf10|ENSMUSG00000039304.12|tumor necrosis factor (ligand) superfamily, member 10
mm39_v1_chr2_+_3119442_3119513	0.193632	Sox2	ENSMUST00000091505.11|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr16_-_26810402_26810402	0.190582	Sox2	ENSMUST00000231299.2|Gmnc|ENSMUSG00000068428.8|geminin coiled-coil domain containing
mm39_v1_chr19_+_21249636_21249662	0.189213	Sox2	ENSMUST00000237651.2|Zfand5|ENSMUSG00000024750.12|zinc finger, AN1-type domain 5
mm39_v1_chrX_+_72800675_72800711	0.18816	Sox2	ENSMUST00000002079.7|Plxnb3|ENSMUSG00000031385.15|plexin B3
mm39_v1_chr17_+_12338161_12338235	0.185316	Sox2	ENSMUST00000024594.9|Agpat4|ENSMUSG00000023827.9|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm39_v1_chr14_-_28691423_28691432	0.1814	Sox2	ENSMUST00000225985.2|Cacna2d3|ENSMUSG00000021991.10|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm39_v1_chr13_+_88969591_88969639	0.181228	Sox2	ENSMUST00000118731.8|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3	ENSMUST00000081769.13|Edil3|ENSMUSG00000034488.15|EGF-like repeats and discoidin I-like domains 3
mm39_v1_chr7_+_107585900_107585900	0.179984	Sox2	ENSMUST00000214677.2|Olfr477|ENSMUSG00000096151.3|olfactory receptor 477
mm39_v1_chr5_+_31011140_31011144	0.175939	Sox2	ENSMUST00000202501.2|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr11_-_97934368_97934442	0.171805	Sox2	ENSMUST00000131519.2|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr2_-_177269992_177270003	0.16971	Sox2	ENSMUST00000108945.8|Gm14406|ENSMUSG00000078865.9|predicted gene 14406	ENSMUST00000108943.2|Gm14406|ENSMUSG00000078865.9|predicted gene 14406
mm39_v1_chr16_-_31094095_31094109	0.16963	Sox2	ENSMUST00000060188.14|Ppp1r2|ENSMUSG00000047714.15|protein phosphatase 1, regulatory inhibitor subunit 2
mm39_v1_chr4_-_134580604_134580656	0.163383	Sox2	ENSMUST00000030628.15|Maco1|ENSMUSG00000028826.15|macoilin 1
mm39_v1_chr11_-_18968714_18968828	0.160052	Sox2	ENSMUST00000177417.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr14_-_109151590_109151615	0.159939	Sox2	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr18_+_13139992_13140094	0.158643	Sox2	ENSMUST00000041676.3|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234084.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234565.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4
mm39_v1_chr12_+_112645237_112645312	0.157524	Sox2	ENSMUST00000174780.2|Zbtb42|ENSMUSG00000037638.6|zinc finger and BTB domain containing 42	ENSMUST00000169593.2|Zbtb42|ENSMUSG00000037638.6|zinc finger and BTB domain containing 42	ENSMUST00000173942.2|Zbtb42|ENSMUSG00000037638.6|zinc finger and BTB domain containing 42
mm39_v1_chr17_+_74645936_74646032	0.155437	Sox2	ENSMUST00000224711.2|Spast|ENSMUSG00000024068.9|spastin	ENSMUST00000024869.8|Spast|ENSMUSG00000024068.9|spastin	ENSMUST00000233611.2|Spast|ENSMUSG00000024068.9|spastin
mm39_v1_chr1_+_70764874_70765082	0.151736	Sox2	ENSMUST00000053922.12|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like	ENSMUST00000161937.2|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like	ENSMUST00000162182.2|Vwc2l|ENSMUSG00000045648.16|von Willebrand factor C domain-containing protein 2-like
mm39_v1_chr7_+_106692427_106692427	0.151721	Sox2	ENSMUST00000210568.4|Olfr17|ENSMUSG00000073897.6|olfactory receptor 17
mm39_v1_chr11_+_69523754_69523832	0.151573	Sox2	ENSMUST00000018909.4|Fxr2|ENSMUSG00000018765.6|fragile X mental retardation, autosomal homolog 2
mm39_v1_chrX_-_8391193_8391193	0.150516	Sox2	ENSMUST00000115573.2|Gm14459|ENSMUSG00000079704.3|predicted gene 14459
mm39_v1_chr6_-_99005835_99005903	0.14958	Sox2	ENSMUST00000154163.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr18_+_4994600_4994623	0.149325	Sox2	ENSMUST00000140448.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr1_-_44157916_44157972	0.146153	Sox2	ENSMUST00000027213.14|Poglut2|ENSMUSG00000026047.14|protein O-glucosyltransferase 2	ENSMUST00000065767.9|Poglut2|ENSMUSG00000026047.14|protein O-glucosyltransferase 2
mm39_v1_chr18_+_37440497_37440523	0.140761	Sox2	ENSMUST00000056712.4|Pcdhb4|ENSMUSG00000045689.4|protocadherin beta 4
mm39_v1_chr13_-_78344492_78344561	0.139446	Sox2	ENSMUST00000125176.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr8_+_93553901_93554022	0.139338	Sox2	ENSMUST00000034187.9|Mmp2|ENSMUSG00000031740.9|matrix metallopeptidase 2
mm39_v1_chr16_+_41353360_41353429	0.138456	Sox2	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr14_-_18659699_18659699	0.136708	Sox2	ENSMUST00000170480.8|Gm3002|ENSMUSG00000096793.8|predicted gene 3002
mm39_v1_chr8_+_93084253_93084379	0.1364	Sox2	ENSMUST00000210246.2|Irx5|ENSMUSG00000031737.12|Iroquois homeobox 5	ENSMUST00000034184.12|Irx5|ENSMUSG00000031737.12|Iroquois homeobox 5
mm39_v1_chr6_-_35303057_35303091	0.131705	Sox2	ENSMUST00000051176.9|Fam180a|ENSMUSG00000047420.9|family with sequence similarity 180, member A
mm39_v1_chr17_-_34834745_34834784	0.129419	Sox2	ENSMUST00000168353.4|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8
mm39_v1_chr1_-_79739469_79739491	0.128203	Sox2	ENSMUST00000113512.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000113513.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000113515.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000113514.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000113510.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000113511.8|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1	ENSMUST00000048820.14|Wdfy1|ENSMUSG00000073643.12|WD repeat and FYVE domain containing 1
mm39_v1_chr7_-_28879879_28880126	0.127092	Sox2	ENSMUST00000209034.2|Psmd8|ENSMUSG00000030591.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	ENSMUST00000182328.8|Psmd8|ENSMUSG00000030591.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	ENSMUST00000186182.2|Psmd8|ENSMUSG00000030591.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	ENSMUST00000059642.17|Psmd8|ENSMUSG00000030591.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm39_v1_chr11_-_40586029_40586055	0.126342	Sox2	ENSMUST00000101347.10|Mat2b|ENSMUSG00000042032.14|methionine adenosyltransferase II, beta
mm39_v1_chr5_+_95254797_95254797	0.121726	Sox2	ENSMUST00000163216.2|Pramel45|ENSMUSG00000092166.3|PRAME like 45
mm39_v1_chr8_+_41276027_41276102	0.120281	Sox2	ENSMUST00000066814.7|Adam39|ENSMUSG00000054033.7|a disintegrin and metallopeptidase domain 39
mm39_v1_chr17_-_29226700_29226804	0.119367	Sox2	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr11_+_54194624_54194670	0.115859	Sox2	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chr3_+_132797588_132797603	0.115101	Sox2	ENSMUST00000029650.9|Ints12|ENSMUSG00000028016.10|integrator complex subunit 12
mm39_v1_chr12_+_8724129_8724150	0.111322	Sox2	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr6_-_119940694_119940797	0.111291	Sox2	ENSMUST00000161512.3|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr11_+_17161912_17161964	0.109018	Sox2	ENSMUST00000046955.7|Wdr92|ENSMUSG00000078970.6|WD repeat domain 92
mm39_v1_chr5_+_88731366_88731382	0.107979	Sox2	ENSMUST00000199312.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr3_+_142265904_142265929	0.107932	Sox2	ENSMUST00000128609.8|Gbp3|ENSMUSG00000028268.15|guanylate binding protein 3	ENSMUST00000029935.14|Gbp3|ENSMUSG00000028268.15|guanylate binding protein 3
mm39_v1_chr5_+_118114795_118114813	0.107834	Sox2	ENSMUST00000202447.4|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chr14_-_18359247_18359247	0.106743	Sox2	ENSMUST00000170207.8|Gm8108|ENSMUSG00000091563.9|predicted gene 8108
mm39_v1_chr9_+_35179153_35179190	0.103125	Sox2	ENSMUST00000034543.5|Rpusd4|ENSMUSG00000032044.5|RNA pseudouridylate synthase domain containing 4
mm39_v1_chr9_-_66500274_66500305	0.103059	Sox2	ENSMUST00000174387.2|Usp3|ENSMUSG00000032376.13|ubiquitin specific peptidase 3
mm39_v1_chr1_-_16589425_16589494	0.101028	Sox2	ENSMUST00000159558.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000054668.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000162627.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000162007.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000128957.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000115359.10|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000151888.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr8_+_105897300_105897446	0.0987065	Sox2	ENSMUST00000052209.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109392.9|Cbfb|ENSMUSG00000031885.15|core binding factor beta	ENSMUST00000109395.8|Cbfb|ENSMUSG00000031885.15|core binding factor beta
mm39_v1_chr2_+_30697838_30698012	0.097886	Sox2	ENSMUST00000041830.10|Ntmt1|ENSMUSG00000026857.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1	ENSMUST00000152374.8|Ntmt1|ENSMUSG00000026857.10|N-terminal Xaa-Pro-Lys N-methyltransferase 1
mm39_v1_chr7_+_29003382_29003432	0.0971219	Sox2	ENSMUST00000049977.13|Dpf1|ENSMUSG00000030584.15|D4, zinc and double PHD fingers family 1
mm39_v1_chr7_-_78228116_78228157	0.0942304	Sox2	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chrX_-_103244784_103244810	0.0941708	Sox2	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr2_-_104241358_104241358	0.090825	Sox2	ENSMUST00000230671.2|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene
mm39_v1_chr2_-_35257741_35257749	0.0903	Sox2	ENSMUST00000028243.2|4930568D16Rik|ENSMUSG00000026882.2|RIKEN cDNA 4930568D16 gene
mm39_v1_chr12_-_16850887_16850933	0.0887467	Sox2	ENSMUST00000161998.3|Greb1|ENSMUSG00000036523.17|gene regulated by estrogen in breast cancer protein
mm39_v1_chr5_-_18040713_18040739	0.0867615	Sox2	ENSMUST00000197890.5|Cd36|ENSMUSG00000002944.16|CD36 molecule
mm39_v1_chr14_-_70449438_70449498	0.0816523	Sox2	ENSMUST00000227929.2|Sorbs3|ENSMUSG00000022091.7|sorbin and SH3 domain containing 3
mm39_v1_chr7_-_4517367_4517482	0.0812387	Sox2	ENSMUST00000166161.8|Tnnt1|ENSMUSG00000064179.14|troponin T1, skeletal, slow
mm39_v1_chr15_-_84739292_84739327	0.080017	Sox2	ENSMUST00000016768.12|Phf21b|ENSMUSG00000016624.16|PHD finger protein 21B
mm39_v1_chrX_-_47966588_47966591	0.0792168	Sox2	ENSMUST00000114928.2|Fsip2l|ENSMUSG00000079606.2|fibrous sheath-interacting protein 2-like
mm39_v1_chr18_-_43820759_43820838	0.0746476	Sox2	ENSMUST00000082254.8|Jakmip2|ENSMUSG00000024502.11|janus kinase and microtubule interacting protein 2
mm39_v1_chr16_+_5703134_5703219	0.0740141	Sox2	ENSMUST00000230658.2|Rbfox1|ENSMUSG00000008658.17|RNA binding protein, fox-1 homolog (C. elegans) 1
mm39_v1_chr9_-_19799300_19799300	0.0718995	Sox2	ENSMUST00000079660.5|Olfr862|ENSMUSG00000063842.6|olfactory receptor 862
mm39_v1_chr17_-_46749370_46749415	0.0699049	Sox2	ENSMUST00000087012.7|Slc22a7|ENSMUSG00000067144.8|solute carrier family 22 (organic anion transporter), member 7
mm39_v1_chr7_-_83533497_83533523	0.0686421	Sox2	ENSMUST00000094216.5|Tlnrd1|ENSMUSG00000070462.5|talin rod domain containing 1
mm39_v1_chr5_-_21260878_21260960	0.0659872	Sox2	ENSMUST00000030556.8|Ptpn12|ENSMUSG00000028771.14|protein tyrosine phosphatase, non-receptor type 12
mm39_v1_chr14_-_55959633_55959668	0.0641542	Sox2	ENSMUST00000169237.8|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000062861.15|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit	ENSMUST00000227061.2|Rabggta|ENSMUSG00000040472.16|Rab geranylgeranyl transferase, a subunit
mm39_v1_chr1_+_86454431_86454459	0.0622252	Sox2	ENSMUST00000045897.15|Ptma|ENSMUSG00000026238.15|prothymosin alpha	ENSMUST00000186255.7|Ptma|ENSMUSG00000026238.15|prothymosin alpha	ENSMUST00000188699.7|Ptma|ENSMUSG00000026238.15|prothymosin alpha
mm39_v1_chr14_+_21549798_21549853	0.0617162	Sox2	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr7_-_24672055_24672069	0.0592302	Sox2	ENSMUST00000205871.2|Rabac1|ENSMUSG00000003380.12|Rab acceptor 1 (prenylated)
mm39_v1_chr19_+_30007910_30007928	0.0591898	Sox2	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr17_+_21952683_21952705	0.0520417	Sox2	ENSMUST00000065871.14|Zfp229|ENSMUSG00000061544.14|zinc finger protein 229	ENSMUST00000183192.8|Zfp229|ENSMUSG00000061544.14|zinc finger protein 229
mm39_v1_chr5_+_64387742_64387792	0.0507715	Sox2	ENSMUST00000119756.6|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr12_-_104718159_104718211	0.0507341	Sox2	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chr3_+_31956656_31956808	0.0480878	Sox2	ENSMUST00000119310.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr7_-_37472979_37473066	0.0465849	Sox2	ENSMUST00000176534.8|Zfp536|ENSMUSG00000043456.18|zinc finger protein 536
mm39_v1_chr5_+_118114826_118114868	0.043026	Sox2	ENSMUST00000035579.10|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chr12_+_18564466_18564547	0.0421121	Sox2	ENSMUST00000177778.9|5730507C01Rik|ENSMUSG00000073197.10|RIKEN cDNA 5730507C01 gene	ENSMUST00000063216.6|5730507C01Rik|ENSMUSG00000073197.10|RIKEN cDNA 5730507C01 gene
mm39_v1_chr7_-_24672083_24672179	0.0418425	Sox2	ENSMUST00000076961.9|Rabac1|ENSMUSG00000003380.12|Rab acceptor 1 (prenylated)
mm39_v1_chr7_-_12063408_12063408	0.0399526	Sox2	ENSMUST00000226701.2|Vmn1r83|ENSMUSG00000066804.4|vomeronasal 1 receptor 83
mm39_v1_chr13_+_83652280_83652346	0.0397465	Sox2	ENSMUST00000199450.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr12_+_8724429_8724470	0.0392655	Sox2	ENSMUST00000169089.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr13_+_83652150_83652170	0.0373621	Sox2	ENSMUST00000198199.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr2_-_18053595_18053634	0.0359842	Sox2	ENSMUST00000142856.2|Skida1|ENSMUSG00000054074.10|SKI/DACH domain containing 1
mm39_v1_chr14_-_71003973_71004005	0.0353048	Sox2	ENSMUST00000226448.2|Xpo7|ENSMUSG00000022100.15|exportin 7	ENSMUST00000022696.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr18_+_58969739_58969824	0.0312169	Sox2	ENSMUST00000052907.7|Adamts19|ENSMUSG00000053441.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm39_v1_chr4_-_110149916_110149929	0.0310971	Sox2	ENSMUST00000106601.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chr10_-_89270527_89270553	0.0290843	Sox2	ENSMUST00000218764.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3
mm39_v1_chr4_-_155870321_155870337	0.0286747	Sox2	ENSMUST00000097742.3|Tmem88b|ENSMUSG00000073680.3|transmembrane protein 88B
mm39_v1_chr2_+_153538572_153538572	0.0268693	Sox2	ENSMUST00000119996.3|Dnmt3c|ENSMUSG00000082079.3|DNA methyltransferase 3C
mm39_v1_chr17_-_75858835_75858941	0.0250981	Sox2	ENSMUST00000234785.2|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A	ENSMUST00000112507.4|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A
mm39_v1_chr17_+_47201552_47201619	0.0246835	Sox2	ENSMUST00000040434.9|Tbcc|ENSMUSG00000036430.9|tubulin-specific chaperone C
mm39_v1_chrX_+_7594670_7594681	0.0239534	Sox2	ENSMUST00000033489.8|Praf2|ENSMUSG00000031149.8|PRA1 domain family 2
mm39_v1_chr10_-_69048928_69048959	0.0222389	Sox2	ENSMUST00000170048.2|A930033H14Rik|ENSMUSG00000090622.2|RIKEN cDNA A930033H14 gene
mm39_v1_chr9_+_121196034_121196108	0.0203781	Sox2	ENSMUST00000210636.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1	ENSMUST00000045903.8|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr13_-_99584091_99584153	0.0192328	Sox2	ENSMUST00000223725.2|Map1b|ENSMUSG00000052727.7|microtubule-associated protein 1B
mm39_v1_chrX_-_100865583_100865583	0.0178889	Sox2	ENSMUST00000239206.2|Gm3858|ENSMUSG00000118638.2|predicted gene 3858
mm39_v1_chr19_+_6414587_6414699	0.0138513	Sox2	ENSMUST00000155973.2|Sf1|ENSMUSG00000024949.18|splicing factor 1
mm39_v1_chr3_+_142265787_142265866	0.0134529	Sox2	ENSMUST00000199325.5|Gbp3|ENSMUSG00000028268.15|guanylate binding protein 3	ENSMUST00000106222.9|Gbp3|ENSMUSG00000028268.15|guanylate binding protein 3
mm39_v1_chr13_+_119565669_119565808	0.0107237	Sox2	ENSMUST00000173627.8|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1	ENSMUST00000126957.9|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1	ENSMUST00000174691.8|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1
mm39_v1_chr18_-_46444804_46444918	0.00844647	Sox2	ENSMUST00000236934.2|Ccdc112|ENSMUSG00000071855.6|coiled-coil domain containing 112
mm39_v1_chr4_-_91264727_91264740	0.0074115	Sox2	ENSMUST00000107124.10|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr3_-_89309944_89310100	0.00314944	Sox2	ENSMUST00000057431.6|Lenep|ENSMUSG00000078173.4|lens epithelial protein
mm39_v1_chr3_+_31956814_31956852	0.00191563	Sox2	ENSMUST00000192429.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000191869.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000178668.2|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000119970.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr12_+_8724220_8724278	0.00109148	Sox2	ENSMUST00000111122.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr4_+_136012019_136012086	0.000499916	Sox2	ENSMUST00000130223.8|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
