mm39_v1_chr14_-_31299275_31299340	2.06527	UAAGACU	ENSMUST00000112027.9|Colq|ENSMUSG00000057606.15|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm39_v1_chr17_-_52139693_52139706	1.75428	UAAGACU	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr10_-_23225781_23225817	1.12031	UAAGACU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr5_+_108213608_108213634	1.01476	UAAGACU	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr9_+_72439496_72439553	0.84277	UAAGACU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr12_-_107969853_107969872	0.815826	UAAGACU	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr17_+_6869070_6869070	0.725489	UAAGACU	ENSMUST00000092966.5|Dynlt1c|ENSMUSG00000000579.15|dynein light chain Tctex-type 1C
mm39_v1_chr12_-_73093953_73093953	0.585418	UAAGACU	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr6_-_145811028_145811085	0.579581	UAAGACU	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr17_-_6367692_6367775	0.573932	UAAGACU	ENSMUST00000232499.2|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A	ENSMUST00000169415.3|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A
mm39_v1_chr2_-_37537224_37537297	0.560842	UAAGACU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr9_+_32607301_32607417	0.559362	UAAGACU	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr11_+_44508137_44508169	0.536468	UAAGACU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr2_-_6889783_6889807	0.529649	UAAGACU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr19_-_14575395_14575451	0.503381	UAAGACU	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr11_-_86248395_86248442	0.463827	UAAGACU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr17_-_6923299_6923299	0.429472	UAAGACU	ENSMUST00000179554.3|Dynlt1f|ENSMUSG00000095677.3|dynein light chain Tctex-type 1F
mm39_v1_chr8_-_96215401_96215480	0.383666	UAAGACU	ENSMUST00000212214.2|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide	ENSMUST00000056919.9|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide
mm39_v1_chr1_+_74545203_74545264	0.378952	UAAGACU	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr3_-_116217579_116217681	0.344885	UAAGACU	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr6_-_99643723_99643784	0.333901	UAAGACU	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr1_-_69724939_69724987	0.324652	UAAGACU	ENSMUST00000027146.9|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr13_-_111626562_111626645	0.317363	UAAGACU	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr9_-_72019109_72019191	0.314999	UAAGACU	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr7_-_115637970_115637985	0.303237	UAAGACU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr13_-_43634695_43634823	0.292206	UAAGACU	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr13_-_56283331_56283444	0.290155	UAAGACU	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chr10_-_45346297_45346386	0.282688	UAAGACU	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chr1_-_97589675_97589799	0.270695	UAAGACU	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr11_+_44409775_44409827	0.26732	UAAGACU	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr6_-_39183712_39183769	0.254816	UAAGACU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr1_-_22031718_22031805	0.2546	UAAGACU	ENSMUST00000029667.13|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173058.8|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173404.2|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5
mm39_v1_chr1_+_99700490_99700490	0.244792	UAAGACU	ENSMUST00000086738.10|Cntnap5b|ENSMUSG00000067028.12|contactin associated protein-like 5B
mm39_v1_chr1_-_119765343_119765403	0.236838	UAAGACU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr10_-_115151451_115151531	0.220689	UAAGACU	ENSMUST00000020343.9|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family	ENSMUST00000218831.2|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family
mm39_v1_chr12_+_32428691_32428709	0.188631	UAAGACU	ENSMUST00000172332.4|Ccdc71l|ENSMUSG00000090946.4|coiled-coil domain containing 71 like
mm39_v1_chr14_-_105414294_105414361	0.187297	UAAGACU	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr4_+_137943603_137943636	0.185469	UAAGACU	ENSMUST00000105827.8|Hp1bp3|ENSMUSG00000028759.14|heterochromatin protein 1, binding protein 3
mm39_v1_chr9_+_86349207_86349225	0.184855	UAAGACU	ENSMUST00000190957.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chr3_+_94744844_94744884	0.184142	UAAGACU	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr4_-_119151717_119151801	0.18045	UAAGACU	ENSMUST00000079644.13|Ybx1|ENSMUSG00000028639.15|Y box protein 1
mm39_v1_chr6_-_100264439_100264461	0.17964	UAAGACU	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr4_-_126323291_126323349	0.178298	UAAGACU	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr11_-_78588194_78588205	0.177987	UAAGACU	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr6_+_38410848_38410901	0.174095	UAAGACU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr1_+_131755715_131755757	0.167959	UAAGACU	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr14_-_20596580_20596650	0.159774	UAAGACU	ENSMUST00000022355.11|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform	ENSMUST00000161445.8|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform	ENSMUST00000159027.8|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform
mm39_v1_chr11_+_54329014_54329046	0.157885	UAAGACU	ENSMUST00000046835.14|Fnip1|ENSMUSG00000035992.16|folliculin interacting protein 1
mm39_v1_chr19_+_41471067_41471128	0.154497	UAAGACU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr4_-_41314877_41314889	0.144204	UAAGACU	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr4_+_140875222_140875282	0.142546	UAAGACU	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr16_-_76170714_76170741	0.139404	UAAGACU	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr5_+_67765216_67765232	0.139279	UAAGACU	ENSMUST00000087241.7|Shisa3|ENSMUSG00000050010.9|shisa family member 3
mm39_v1_chr3_-_119576911_119577037	0.131924	UAAGACU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr12_-_91556761_91556783	0.130382	UAAGACU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr9_+_45029080_45029179	0.129529	UAAGACU	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chr7_-_66339319_66339351	0.124583	UAAGACU	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr16_+_17051423_17051528	0.109325	UAAGACU	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr1_+_43973167_43973234	0.109203	UAAGACU	ENSMUST00000087933.10|Tpp2|ENSMUSG00000041763.15|tripeptidyl peptidase II	ENSMUST00000188313.7|Tpp2|ENSMUSG00000041763.15|tripeptidyl peptidase II
mm39_v1_chr18_+_36414122_36414204	0.0965539	UAAGACU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr2_+_121859025_121859137	0.0961511	UAAGACU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr10_-_118705029_118705091	0.0959027	UAAGACU	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr3_+_109247938_109247976	0.090049	UAAGACU	ENSMUST00000046864.14|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chr11_-_82719850_82719869	0.0819439	UAAGACU	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr13_-_48779072_48779140	0.0733697	UAAGACU	ENSMUST00000035824.11|Ptpdc1|ENSMUSG00000038042.12|protein tyrosine phosphatase domain containing 1
mm39_v1_chr11_+_97306353_97306402	0.0666173	UAAGACU	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr11_-_66416790_66416790	0.0646683	UAAGACU	ENSMUST00000066679.7|Shisa6|ENSMUSG00000053930.14|shisa family member 6
mm39_v1_chr17_+_29768757_29768773	0.0572901	UAAGACU	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr4_+_123798625_123798643	0.0535441	UAAGACU	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr8_+_91555449_91555470	0.0492675	UAAGACU	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr4_+_5644090_5644129	0.0284025	UAAGACU	ENSMUST00000054857.13|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr12_+_49429574_49429666	0.0177887	UAAGACU	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr8_-_94739469_94739479	0.0167361	UAAGACU	ENSMUST00000053766.14|Amfr|ENSMUSG00000031751.15|autocrine motility factor receptor
mm39_v1_chr1_-_9818601_9818676	0.0129711	UAAGACU	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chr7_+_48896560_48896592	0.0123429	UAAGACU	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr18_+_53309388_53309448	0.0101031	UAAGACU	ENSMUST00000037850.7|Snx2|ENSMUSG00000034484.9|sorting nexin 2
mm39_v1_chr15_-_93173032_93173060	0.00738348	UAAGACU	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
