mm39_v1_chr4_-_55532453_55532485	8.51222	UCAAGUA	ENSMUST00000132746.2|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)	ENSMUST00000107619.3|Klf4|ENSMUSG00000003032.9|Kruppel-like factor 4 (gut)
mm39_v1_chr6_-_52203146_52203176	7.26718	UCAAGUA	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr13_+_49697919_49698009	6.15713	UCAAGUA	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chr10_-_128237087_128237103	5.63495	UCAAGUA	ENSMUST00000042666.13|Slc39a5|ENSMUSG00000039878.14|solute carrier family 39 (metal ion transporter), member 5
mm39_v1_chr10_+_42736345_42736373	5.55047	UCAAGUA	ENSMUST00000063063.14|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr6_+_4505493_4505493	5.37824	UCAAGUA	ENSMUST00000031668.10|Col1a2|ENSMUSG00000029661.17|collagen, type I, alpha 2
mm39_v1_chr6_-_52181393_52181567	5.25861	UCAAGUA	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr8_-_58106057_58106074	5.20739	UCAAGUA	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr2_-_136958544_136958564	5.18576	UCAAGUA	ENSMUST00000028735.8|Jag1|ENSMUSG00000027276.8|jagged 1
mm39_v1_chr1_-_52539395_52539459	5.15924	UCAAGUA	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr15_-_85918378_85918413	4.52268	UCAAGUA	ENSMUST00000016172.10|Celsr1|ENSMUSG00000016028.12|cadherin, EGF LAG seven-pass G-type receptor 1
mm39_v1_chr2_+_74535242_74535258	4.45885	UCAAGUA	ENSMUST00000019749.4|Hoxd8|ENSMUSG00000027102.5|homeobox D8
mm39_v1_chr8_+_56747613_56747627	4.3692	UCAAGUA	ENSMUST00000034026.10|Hpgd|ENSMUSG00000031613.10|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm39_v1_chr6_-_47571901_47571981	4.34428	UCAAGUA	ENSMUST00000081721.13|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114618.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit	ENSMUST00000114616.8|Ezh2|ENSMUSG00000029687.17|enhancer of zeste 2 polycomb repressive complex 2 subunit
mm39_v1_chr5_+_3393893_3393945	4.32645	UCAAGUA	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr9_+_92424276_92424325	4.29487	UCAAGUA	ENSMUST00000070522.14|Plod2|ENSMUSG00000032374.15|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	ENSMUST00000160359.2|Plod2|ENSMUSG00000032374.15|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm39_v1_chr13_+_13612136_13612136	4.19691	UCAAGUA	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr13_+_111822712_111822745	4.18341	UCAAGUA	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr14_-_30348153_30348174	4.13636	UCAAGUA	ENSMUST00000112211.9|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta	ENSMUST00000112210.11|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta
mm39_v1_chr4_+_11156411_11156453	4.02053	UCAAGUA	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr10_+_108167973_108168020	3.87492	UCAAGUA	ENSMUST00000095313.5|Pawr|ENSMUSG00000035873.9|PRKC, apoptosis, WT1, regulator
mm39_v1_chr13_+_51799268_51799342	3.80256	UCAAGUA	ENSMUST00000075853.6|Cks2|ENSMUSG00000062248.6|CDC28 protein kinase regulatory subunit 2
mm39_v1_chr2_-_169973076_169973140	3.77266	UCAAGUA	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr17_-_27247891_27247983	3.74494	UCAAGUA	ENSMUST00000078691.12|Bak1|ENSMUSG00000057789.15|BCL2-antagonist/killer 1
mm39_v1_chr17_+_75312520_75312563	3.71043	UCAAGUA	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr5_+_103573367_103573367	3.70305	UCAAGUA	ENSMUST00000048957.11|Ptpn13|ENSMUSG00000034573.15|protein tyrosine phosphatase, non-receptor type 13
mm39_v1_chrX_-_141749704_141749730	3.66757	UCAAGUA	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr12_+_111005768_111005834	3.59841	UCAAGUA	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr4_+_148025316_148025390	3.51993	UCAAGUA	ENSMUST00000103232.2|2510039O18Rik|ENSMUSG00000044496.7|RIKEN cDNA 2510039O18 gene
mm39_v1_chr1_-_51517548_51517584	3.50044	UCAAGUA	ENSMUST00000027279.12|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000186684.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000188204.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000185534.2|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1	ENSMUST00000188051.7|Nabp1|ENSMUSG00000026107.12|nucleic acid binding protein 1
mm39_v1_chr16_-_50252703_50252772	3.49225	UCAAGUA	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr5_+_117457126_117457185	3.48757	UCAAGUA	ENSMUST00000111967.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr3_-_100396635_100396652	3.43171	UCAAGUA	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr17_-_43187280_43187368	3.32285	UCAAGUA	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr18_+_58011691_58011750	3.22905	UCAAGUA	ENSMUST00000115366.3|Slc12a2|ENSMUSG00000024597.12|solute carrier family 12, member 2
mm39_v1_chr13_+_108452866_108452892	3.2037	UCAAGUA	ENSMUST00000051594.12|Depdc1b|ENSMUSG00000021697.13|DEP domain containing 1B
mm39_v1_chr18_-_52662917_52662989	3.17917	UCAAGUA	ENSMUST00000171470.8|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chr17_-_90217868_90217877	3.16046	UCAAGUA	ENSMUST00000086423.6|Gm10184|ENSMUSG00000066878.6|predicted pseudogene 10184
mm39_v1_chr18_+_73706115_73706115	3.10741	UCAAGUA	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr3_-_9069745_9069809	3.096	UCAAGUA	ENSMUST00000120143.8|Tpd52|ENSMUSG00000027506.16|tumor protein D52
mm39_v1_chr5_+_77413282_77413396	3.08801	UCAAGUA	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr6_+_38410848_38410901	3.07582	UCAAGUA	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr11_-_117671436_117671525	3.06935	UCAAGUA	ENSMUST00000026659.10|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6	ENSMUST00000127227.2|Tmc6|ENSMUSG00000025572.19|transmembrane channel-like gene family 6
mm39_v1_chr16_-_31898088_31898178	3.03939	UCAAGUA	ENSMUST00000023467.9|Pak2|ENSMUSG00000022781.9|p21 (RAC1) activated kinase 2
mm39_v1_chr14_+_69846517_69846517	3.03222	UCAAGUA	ENSMUST00000022660.14|Loxl2|ENSMUSG00000034205.17|lysyl oxidase-like 2
mm39_v1_chr6_-_127128007_127128023	3.02995	UCAAGUA	ENSMUST00000000188.12|Ccnd2|ENSMUSG00000000184.13|cyclin D2
mm39_v1_chr14_+_70782788_70782800	2.98006	UCAAGUA	ENSMUST00000047218.5|Reep4|ENSMUSG00000033589.5|receptor accessory protein 4
mm39_v1_chr5_-_147013384_147013401	2.94412	UCAAGUA	ENSMUST00000016664.8|Lnx2|ENSMUSG00000016520.8|ligand of numb-protein X 2
mm39_v1_chr2_+_74552322_74552418	2.92258	UCAAGUA	ENSMUST00000047904.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chr13_+_31809774_31809799	2.90365	UCAAGUA	ENSMUST00000042054.3|Foxf2|ENSMUSG00000038402.3|forkhead box F2
mm39_v1_chr13_-_32522548_32522723	2.89374	UCAAGUA	ENSMUST00000041859.9|Gmds|ENSMUSG00000038372.15|GDP-mannose 4, 6-dehydratase
mm39_v1_chr1_-_119349969_119350021	2.89252	UCAAGUA	ENSMUST00000038765.6|Inhbb|ENSMUSG00000037035.6|inhibin beta-B
mm39_v1_chr13_-_111945499_111945552	2.88846	UCAAGUA	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr7_+_4743114_4743205	2.87049	UCAAGUA	ENSMUST00000098853.9|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000130215.8|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000108582.10|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000108583.9|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C
mm39_v1_chr1_-_171854818_171854880	2.86138	UCAAGUA	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr3_+_51323383_51323465	2.82374	UCAAGUA	ENSMUST00000029303.13|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr2_-_74489763_74489901	2.81928	UCAAGUA	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr14_-_63482668_63482714	2.81677	UCAAGUA	ENSMUST00000118022.8|Gata4|ENSMUSG00000021944.16|GATA binding protein 4
mm39_v1_chrX_-_160942713_160942728	2.80504	UCAAGUA	ENSMUST00000087085.10|Nhs|ENSMUSG00000059493.14|NHS actin remodeling regulator
mm39_v1_chr12_-_102844537_102844709	2.79475	UCAAGUA	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr14_+_54669054_54669131	2.79009	UCAAGUA	ENSMUST00000089688.6|Mmp14|ENSMUSG00000000957.12|matrix metallopeptidase 14 (membrane-inserted)	ENSMUST00000225641.2|Mmp14|ENSMUSG00000000957.12|matrix metallopeptidase 14 (membrane-inserted)
mm39_v1_chr6_+_91661034_91661058	2.75888	UCAAGUA	ENSMUST00000032185.9|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr9_-_72019109_72019191	2.73883	UCAAGUA	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr1_-_37580084_37580128	2.718	UCAAGUA	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr4_+_148888877_148888897	2.71689	UCAAGUA	ENSMUST00000094464.10|Casz1|ENSMUSG00000028977.18|castor zinc finger 1	ENSMUST00000122222.8|Casz1|ENSMUSG00000028977.18|castor zinc finger 1
mm39_v1_chr2_+_49341498_49341571	2.70208	UCAAGUA	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr15_-_8473918_8473991	2.6974	UCAAGUA	ENSMUST00000052965.8|Nipbl|ENSMUSG00000022141.8|NIPBL cohesin loading factor
mm39_v1_chr9_+_72439496_72439553	2.66641	UCAAGUA	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr5_+_32293145_32293201	2.66435	UCAAGUA	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr19_+_38043446_38043495	2.66312	UCAAGUA	ENSMUST00000236044.2|Cep55|ENSMUSG00000024989.16|centrosomal protein 55	ENSMUST00000116506.8|Cep55|ENSMUSG00000024989.16|centrosomal protein 55	ENSMUST00000096096.12|Cep55|ENSMUSG00000024989.16|centrosomal protein 55	ENSMUST00000169673.3|Cep55|ENSMUSG00000024989.16|centrosomal protein 55
mm39_v1_chr15_-_56557920_56557950	2.62791	UCAAGUA	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr12_+_3857001_3857064	2.60937	UCAAGUA	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr4_+_141028539_141028561	2.52218	UCAAGUA	ENSMUST00000006614.3|Epha2|ENSMUSG00000006445.4|Eph receptor A2
mm39_v1_chr6_+_149210889_149210936	2.50527	UCAAGUA	ENSMUST00000130664.8|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1	ENSMUST00000046689.13|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chr10_-_120312374_120312388	2.49235	UCAAGUA	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr15_+_81469538_81469598	2.46419	UCAAGUA	ENSMUST00000068387.11|Ep300|ENSMUSG00000055024.13|E1A binding protein p300
mm39_v1_chr4_-_123644091_123644138	2.46078	UCAAGUA	ENSMUST00000102636.4|Akirin1|ENSMUSG00000023075.10|akirin 1
mm39_v1_chr17_+_64907697_64907761	2.39905	UCAAGUA	ENSMUST00000086723.10|Man2a1|ENSMUSG00000024085.14|mannosidase 2, alpha 1
mm39_v1_chr13_-_99027544_99027571	2.38464	UCAAGUA	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr5_+_146168020_146168195	2.38408	UCAAGUA	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr14_-_118943591_118943648	2.35815	UCAAGUA	ENSMUST00000036554.14|Abcc4|ENSMUSG00000032849.15|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	ENSMUST00000166646.2|Abcc4|ENSMUSG00000032849.15|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm39_v1_chr18_+_36414122_36414204	2.34126	UCAAGUA	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr17_+_29709723_29709742	2.32055	UCAAGUA	ENSMUST00000024811.9|Pim1|ENSMUSG00000024014.9|proviral integration site 1
mm39_v1_chr4_-_87951565_87951610	2.28519	UCAAGUA	ENSMUST00000078090.12|Mllt3|ENSMUSG00000028496.18|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
mm39_v1_chr14_+_34395845_34395890	2.27912	UCAAGUA	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr7_-_133826817_133826865	2.27102	UCAAGUA	ENSMUST00000067680.11|Adam12|ENSMUSG00000054555.12|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm39_v1_chr9_-_75316625_75316668	2.26121	UCAAGUA	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr13_-_40887244_40887313	2.19424	UCAAGUA	ENSMUST00000110193.9|Tfap2a|ENSMUSG00000021359.17|transcription factor AP-2, alpha
mm39_v1_chrX_-_51254129_51254157	2.18589	UCAAGUA	ENSMUST00000033450.3|Gpc4|ENSMUSG00000031119.5|glypican 4
mm39_v1_chr5_+_97145533_97145625	2.16924	UCAAGUA	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr10_+_69932930_69933066	2.16886	UCAAGUA	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr17_+_87270504_87270537	2.16195	UCAAGUA	ENSMUST00000024956.15|Rhoq|ENSMUSG00000024143.16|ras homolog family member Q
mm39_v1_chr15_-_103275190_103275225	2.13047	UCAAGUA	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr11_-_106890307_106890367	2.11798	UCAAGUA	ENSMUST00000018506.13|Kpna2|ENSMUSG00000018362.15|karyopherin (importin) alpha 2
mm39_v1_chr13_-_46881388_46881482	2.11111	UCAAGUA	ENSMUST00000021803.10|Nup153|ENSMUSG00000021374.11|nucleoporin 153
mm39_v1_chr5_-_25703700_25703841	2.08765	UCAAGUA	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr5_+_75312939_75312967	2.07881	UCAAGUA	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr8_+_126637165_126637208	2.05995	UCAAGUA	ENSMUST00000034316.6|Map3k21|ENSMUSG00000031853.6|mitogen-activated protein kinase kinase kinase 21
mm39_v1_chr4_-_40853950_40854022	2.03408	UCAAGUA	ENSMUST00000030121.13|B4galt1|ENSMUSG00000028413.14|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	ENSMUST00000108096.3|B4galt1|ENSMUSG00000028413.14|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
mm39_v1_chr1_+_136059101_136059142	2.02357	UCAAGUA	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chrX_-_50106844_50106910	2.02073	UCAAGUA	ENSMUST00000053593.8|Rap2c|ENSMUSG00000050029.8|RAP2C, member of RAS oncogene family
mm39_v1_chr1_-_155848917_155849012	2.00939	UCAAGUA	ENSMUST00000138762.8|Cep350|ENSMUSG00000033671.19|centrosomal protein 350
mm39_v1_chr9_+_65816206_65816302	1.988	UCAAGUA	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr2_-_59955995_59956119	1.97699	UCAAGUA	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr8_+_84748073_84748104	1.97188	UCAAGUA	ENSMUST00000055077.7|Palm3|ENSMUSG00000047986.13|paralemmin 3
mm39_v1_chr18_-_73836810_73836877	1.97009	UCAAGUA	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chr12_+_69418886_69418946	1.96276	UCAAGUA	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr18_+_58969739_58969824	1.95227	UCAAGUA	ENSMUST00000052907.7|Adamts19|ENSMUSG00000053441.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm39_v1_chr5_+_110283689_110283791	1.94687	UCAAGUA	ENSMUST00000200038.2|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000112519.9|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000198633.5|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000014812.13|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000199811.3|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains
mm39_v1_chr1_-_13660027_13660134	1.94466	UCAAGUA	ENSMUST00000027068.11|Tram1|ENSMUSG00000025935.11|translocating chain-associating membrane protein 1
mm39_v1_chr19_-_41836514_41836571	1.9387	UCAAGUA	ENSMUST00000059231.4|Frat2|ENSMUSG00000047604.4|frequently rearranged in advanced T cell lymphomas 2
mm39_v1_chr2_+_153491363_153491380	1.93032	UCAAGUA	ENSMUST00000072997.10|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109773.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109774.9|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000081628.13|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000103151.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000056495.14|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000088976.12|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000109772.8|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B	ENSMUST00000103150.10|Dnmt3b|ENSMUSG00000027478.16|DNA methyltransferase 3B
mm39_v1_chr3_+_101284391_101284421	1.92172	UCAAGUA	ENSMUST00000043983.11|Igsf3|ENSMUSG00000042035.12|immunoglobulin superfamily, member 3
mm39_v1_chr7_-_116042674_116042698	1.91541	UCAAGUA	ENSMUST00000170430.3|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	ENSMUST00000206219.2|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
mm39_v1_chr10_+_96452860_96452877	1.88606	UCAAGUA	ENSMUST00000038377.9|Btg1|ENSMUSG00000036478.9|BTG anti-proliferation factor 1
mm39_v1_chr11_+_94102255_94102280	1.87827	UCAAGUA	ENSMUST00000041589.6|Tob1|ENSMUSG00000037573.6|transducer of ErbB-2.1
mm39_v1_chr7_+_65759198_65759263	1.8758	UCAAGUA	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr19_-_31742427_31742480	1.87187	UCAAGUA	ENSMUST00000065067.14|Prkg1|ENSMUSG00000052920.17|protein kinase, cGMP-dependent, type I
mm39_v1_chr17_-_74601769_74601801	1.86155	UCAAGUA	ENSMUST00000078459.8|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1	ENSMUST00000232989.2|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1
mm39_v1_chr11_+_57536260_57536315	1.79739	UCAAGUA	ENSMUST00000066987.14|Galnt10|ENSMUSG00000020520.15|polypeptide N-acetylgalactosaminyltransferase 10	ENSMUST00000108846.2|Galnt10|ENSMUSG00000020520.15|polypeptide N-acetylgalactosaminyltransferase 10
mm39_v1_chr16_-_58343789_58343883	1.79401	UCAAGUA	ENSMUST00000137035.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	ENSMUST00000149456.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm39_v1_chr6_+_21985902_21985971	1.78362	UCAAGUA	ENSMUST00000115383.9|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr18_+_75953244_75953308	1.76332	UCAAGUA	ENSMUST00000058997.15|Zbtb7c|ENSMUSG00000044646.16|zinc finger and BTB domain containing 7C
mm39_v1_chr18_+_82928959_82929005	1.75372	UCAAGUA	ENSMUST00000171238.8|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr17_+_27775613_27775627	1.75009	UCAAGUA	ENSMUST00000231780.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232253.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232552.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000117600.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr15_+_80595486_80595541	1.7478	UCAAGUA	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr9_-_115139489_115139516	1.74658	UCAAGUA	ENSMUST00000035010.10|Stt3b|ENSMUSG00000032437.11|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm39_v1_chr2_-_60793536_60793595	1.72137	UCAAGUA	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr18_-_88912446_88912497	1.71606	UCAAGUA	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr7_+_110226857_110226873	1.71555	UCAAGUA	ENSMUST00000033054.10|Adm|ENSMUSG00000030790.16|adrenomedullin
mm39_v1_chr3_-_58433313_58433318	1.71085	UCAAGUA	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr13_-_100688949_100689006	1.69867	UCAAGUA	ENSMUST00000159515.2|Ocln|ENSMUSG00000021638.13|occludin	ENSMUST00000160859.8|Ocln|ENSMUSG00000021638.13|occludin	ENSMUST00000069756.11|Ocln|ENSMUSG00000021638.13|occludin
mm39_v1_chr11_+_43419586_43419623	1.67959	UCAAGUA	ENSMUST00000050574.7|Ccnjl|ENSMUSG00000044707.8|cyclin J-like
mm39_v1_chr5_+_147367237_147367355	1.67457	UCAAGUA	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr4_+_123798625_123798643	1.64895	UCAAGUA	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr18_-_10610048_10610146	1.64158	UCAAGUA	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chr5_+_92957231_92957295	1.6172	UCAAGUA	ENSMUST00000113054.9|Shroom3|ENSMUSG00000029381.17|shroom family member 3
mm39_v1_chr12_+_110704378_110704459	1.60682	UCAAGUA	ENSMUST00000193053.6|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20	ENSMUST00000095410.8|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20
mm39_v1_chr5_+_111027654_111027708	1.59986	UCAAGUA	ENSMUST00000040111.10|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28	ENSMUST00000156290.9|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28
mm39_v1_chr10_-_123032821_123032868	1.58299	UCAAGUA	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr12_+_79075924_79076002	1.58074	UCAAGUA	ENSMUST00000039928.7|Plekhh1|ENSMUSG00000060716.8|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm39_v1_chr6_+_83302998_83303046	1.57152	UCAAGUA	ENSMUST00000055261.11|Mob1a|ENSMUSG00000043131.15|MOB kinase activator 1A
mm39_v1_chrX_+_67864699_67864699	1.56736	UCAAGUA	ENSMUST00000096420.3|Gm14698|ENSMUSG00000071748.3|predicted gene 14698
mm39_v1_chr1_+_78794475_78794644	1.56452	UCAAGUA	ENSMUST00000057262.8|Kcne4|ENSMUSG00000047330.9|potassium voltage-gated channel, Isk-related subfamily, gene 4	ENSMUST00000187432.2|Kcne4|ENSMUSG00000047330.9|potassium voltage-gated channel, Isk-related subfamily, gene 4
mm39_v1_chr7_+_122723365_122723446	1.52978	UCAAGUA	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr4_-_11386756_11386783	1.52766	UCAAGUA	ENSMUST00000108313.8|Esrp1|ENSMUSG00000040728.16|epithelial splicing regulatory protein 1	ENSMUST00000108311.9|Esrp1|ENSMUSG00000040728.16|epithelial splicing regulatory protein 1
mm39_v1_chr11_-_102076028_102076142	1.51133	UCAAGUA	ENSMUST00000107156.9|Lsm12|ENSMUSG00000020922.12|LSM12 homolog	ENSMUST00000021297.6|Lsm12|ENSMUSG00000020922.12|LSM12 homolog
mm39_v1_chr14_-_101846459_101846511	1.49316	UCAAGUA	ENSMUST00000161991.8|Tbc1d4|ENSMUSG00000033083.17|TBC1 domain family, member 4
mm39_v1_chr2_+_10377237_10377309	1.47479	UCAAGUA	ENSMUST00000114864.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000116594.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000041105.7|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2
mm39_v1_chr15_+_84807582_84807625	1.47472	UCAAGUA	ENSMUST00000165443.4|Nup50|ENSMUSG00000016619.11|nucleoporin 50
mm39_v1_chr7_+_82516491_82516604	1.46425	UCAAGUA	ENSMUST00000082237.7|Mex3b|ENSMUSG00000057706.8|mex3 RNA binding family member B
mm39_v1_chr16_-_45664664_45664744	1.44767	UCAAGUA	ENSMUST00000036355.13|Phldb2|ENSMUSG00000033149.18|pleckstrin homology like domain, family B, member 2
mm39_v1_chr11_+_45946800_45946895	1.44404	UCAAGUA	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr3_-_59251573_59251677	1.41873	UCAAGUA	ENSMUST00000193455.6|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000039419.12|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000195983.2|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10
mm39_v1_chr8_+_117884711_117884876	1.41088	UCAAGUA	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr13_-_24464699_24464778	1.40997	UCAAGUA	ENSMUST00000110398.8|Carmil1|ENSMUSG00000021338.18|capping protein regulator and myosin 1 linker 1	ENSMUST00000072889.12|Carmil1|ENSMUSG00000021338.18|capping protein regulator and myosin 1 linker 1
mm39_v1_chr3_-_49711765_49711772	1.39594	UCAAGUA	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr13_+_104424359_104424432	1.39439	UCAAGUA	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr14_-_58127698_58127777	1.3913	UCAAGUA	ENSMUST00000089473.5|Zdhhc20|ENSMUSG00000021969.9|zinc finger, DHHC domain containing 20
mm39_v1_chr19_+_43678109_43678133	1.39036	UCAAGUA	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr19_+_53298906_53298983	1.36271	UCAAGUA	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr16_-_4031814_4031861	1.36013	UCAAGUA	ENSMUST00000023165.9|Crebbp|ENSMUSG00000022521.11|CREB binding protein
mm39_v1_chr12_-_21423551_21423594	1.35712	UCAAGUA	ENSMUST00000101551.10|Adam17|ENSMUSG00000052593.17|a disintegrin and metallopeptidase domain 17
mm39_v1_chr19_+_6326755_6326823	1.35026	UCAAGUA	ENSMUST00000025684.4|Ehd1|ENSMUSG00000024772.10|EH-domain containing 1
mm39_v1_chr2_+_74498551_74498654	1.35026	UCAAGUA	ENSMUST00000001872.5|Hoxd13|ENSMUSG00000001819.5|homeobox D13
mm39_v1_chr10_+_126814542_126814618	1.34477	UCAAGUA	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr8_+_80366247_80366333	1.34221	UCAAGUA	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr12_+_4967376_4967438	1.32935	UCAAGUA	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr9_-_96771433_96771527	1.31733	UCAAGUA	ENSMUST00000112951.9|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1	ENSMUST00000126411.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1	ENSMUST00000078478.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1	ENSMUST00000119141.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1	ENSMUST00000120101.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1
mm39_v1_chr19_+_31846154_31846187	1.31449	UCAAGUA	ENSMUST00000224564.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224304.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000075838.8|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor	ENSMUST00000224400.2|A1cf|ENSMUSG00000052595.9|APOBEC1 complementation factor
mm39_v1_chr18_-_55123153_55123238	1.30495	UCAAGUA	ENSMUST00000064763.7|Zfp608|ENSMUSG00000052713.10|zinc finger protein 608
mm39_v1_chr14_+_49303952_49304045	1.29641	UCAAGUA	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr6_-_30304512_30304569	1.28391	UCAAGUA	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr1_-_13062873_13062892	1.26635	UCAAGUA	ENSMUST00000188454.7|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr14_-_69522431_69522561	1.25716	UCAAGUA	ENSMUST00000183882.2|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37	ENSMUST00000037064.5|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37
mm39_v1_chr17_-_88372671_88372719	1.24439	UCAAGUA	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chrX_-_93166992_93167018	1.23452	UCAAGUA	ENSMUST00000088102.12|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked	ENSMUST00000113927.8|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked
mm39_v1_chr15_-_50753061_50753118	1.22988	UCAAGUA	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr2_+_128659997_128660061	1.22527	UCAAGUA	ENSMUST00000110325.8|Tmem87b|ENSMUSG00000014353.16|transmembrane protein 87B
mm39_v1_chr3_-_95725944_95726114	1.22198	UCAAGUA	ENSMUST00000200164.5|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000090791.8|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000197449.2|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2
mm39_v1_chr9_-_66500404_66500424	1.20402	UCAAGUA	ENSMUST00000127569.8|Usp3|ENSMUSG00000032376.13|ubiquitin specific peptidase 3
mm39_v1_chr2_+_79465696_79465729	1.19796	UCAAGUA	ENSMUST00000111785.9|Itprid2|ENSMUSG00000027007.17|ITPR interacting domain containing 2
mm39_v1_chr4_-_133360749_133360832	1.17853	UCAAGUA	ENSMUST00000084238.5|Zdhhc18|ENSMUSG00000037553.15|zinc finger, DHHC domain containing 18
mm39_v1_chr11_-_78277384_78277433	1.17644	UCAAGUA	ENSMUST00000108294.2|Foxn1|ENSMUSG00000002057.5|forkhead box N1
mm39_v1_chr2_+_71617266_71617322	1.16297	UCAAGUA	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr14_-_40688764_40688834	1.15965	UCAAGUA	ENSMUST00000047652.6|Tspan14|ENSMUSG00000037824.7|tetraspanin 14
mm39_v1_chr18_+_32296126_32296249	1.15381	UCAAGUA	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr8_-_106553822_106553982	1.15361	UCAAGUA	ENSMUST00000239468.2|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10	ENSMUST00000041400.6|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10
mm39_v1_chr17_+_28128307_28128532	1.15096	UCAAGUA	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr19_+_53665719_53665737	1.14951	UCAAGUA	ENSMUST00000164202.9|Rbm20|ENSMUSG00000043639.16|RNA binding motif protein 20
mm39_v1_chr19_-_55304392_55304479	1.14078	UCAAGUA	ENSMUST00000224291.2|Zdhhc6|ENSMUSG00000024982.11|zinc finger, DHHC domain containing 6	ENSMUST00000225495.2|Zdhhc6|ENSMUSG00000024982.11|zinc finger, DHHC domain containing 6	ENSMUST00000076891.7|Zdhhc6|ENSMUSG00000024982.11|zinc finger, DHHC domain containing 6	ENSMUST00000224897.2|Zdhhc6|ENSMUSG00000024982.11|zinc finger, DHHC domain containing 6
mm39_v1_chr10_+_110581293_110581433	1.13933	UCAAGUA	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr6_-_99243455_99243501	1.13334	UCAAGUA	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr16_+_58228806_58228886	1.12735	UCAAGUA	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr6_-_83418656_83418666	1.12624	UCAAGUA	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr10_+_71183571_71183593	1.12493	UCAAGUA	ENSMUST00000079252.13|Ipmk|ENSMUSG00000060733.14|inositol polyphosphate multikinase
mm39_v1_chrX_+_13147209_13147270	1.11787	UCAAGUA	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr11_-_109364424_109364504	1.11732	UCAAGUA	ENSMUST00000070152.12|Slc16a6|ENSMUSG00000041920.15|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm39_v1_chr15_+_34082805_34082882	1.10668	UCAAGUA	ENSMUST00000022865.17|Mtdh|ENSMUSG00000022255.17|metadherin
mm39_v1_chr5_-_29683468_29683595	1.10627	UCAAGUA	ENSMUST00000165512.4|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1	ENSMUST00000001608.8|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1
mm39_v1_chr3_-_103698853_103698879	1.09956	UCAAGUA	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr6_-_97594498_97594558	1.09884	UCAAGUA	ENSMUST00000113355.9|Frmd4b|ENSMUSG00000030064.17|FERM domain containing 4B
mm39_v1_chr16_+_42727926_42728047	1.09434	UCAAGUA	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr11_-_86148344_86148376	1.08821	UCAAGUA	ENSMUST00000136469.2|Ints2|ENSMUSG00000018068.14|integrator complex subunit 2	ENSMUST00000018212.13|Ints2|ENSMUSG00000018068.14|integrator complex subunit 2
mm39_v1_chr3_-_85653573_85653573	1.07745	UCAAGUA	ENSMUST00000118408.8|Fam160a1|ENSMUSG00000051000.18|family with sequence similarity 160, member A1
mm39_v1_chr6_+_86342622_86342640	1.07635	UCAAGUA	ENSMUST00000071492.9|Fam136a|ENSMUSG00000057497.9|family with sequence similarity 136, member A
mm39_v1_chr7_-_34755985_34756002	1.07471	UCAAGUA	ENSMUST00000130491.3|Cebpg|ENSMUSG00000056216.10|CCAAT/enhancer binding protein (C/EBP), gamma
mm39_v1_chr2_+_27776428_27776452	1.07157	UCAAGUA	ENSMUST00000028280.14|Col5a1|ENSMUSG00000026837.17|collagen, type V, alpha 1
mm39_v1_chr19_-_60779077_60779105	1.06855	UCAAGUA	ENSMUST00000025955.8|Eif3a|ENSMUSG00000024991.9|eukaryotic translation initiation factor 3, subunit A
mm39_v1_chr4_-_120604445_120604602	1.06565	UCAAGUA	ENSMUST00000030376.8|Kcnq4|ENSMUSG00000028631.8|potassium voltage-gated channel, subfamily Q, member 4
mm39_v1_chr19_-_47452840_47452894	1.06419	UCAAGUA	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr6_+_97783975_97784028	1.05829	UCAAGUA	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr17_+_69463786_69463845	1.05769	UCAAGUA	ENSMUST00000112680.8|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3	ENSMUST00000080208.7|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3	ENSMUST00000225977.2|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3
mm39_v1_chrX_+_103526380_103526468	1.05616	UCAAGUA	ENSMUST00000087867.6|Uprt|ENSMUSG00000073016.4|uracil phosphoribosyltransferase
mm39_v1_chr11_+_109253598_109253695	1.03921	UCAAGUA	ENSMUST00000106702.4|Gna13|ENSMUSG00000020611.15|guanine nucleotide binding protein, alpha 13	ENSMUST00000020930.14|Gna13|ENSMUSG00000020611.15|guanine nucleotide binding protein, alpha 13
mm39_v1_chr8_-_125448695_125448738	1.03737	UCAAGUA	ENSMUST00000117624.9|Ttc13|ENSMUSG00000037300.20|tetratricopeptide repeat domain 13	ENSMUST00000231984.2|Ttc13|ENSMUSG00000037300.20|tetratricopeptide repeat domain 13	ENSMUST00000041614.15|Ttc13|ENSMUSG00000037300.20|tetratricopeptide repeat domain 13	ENSMUST00000214828.2|Ttc13|ENSMUSG00000037300.20|tetratricopeptide repeat domain 13	ENSMUST00000118134.3|Ttc13|ENSMUSG00000037300.20|tetratricopeptide repeat domain 13
mm39_v1_chr9_-_114393406_114393437	1.03596	UCAAGUA	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr6_+_95094721_95094938	1.02594	UCAAGUA	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr14_+_48358267_48358285	1.02073	UCAAGUA	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr14_+_28226697_28226720	1.02038	UCAAGUA	ENSMUST00000063465.12|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr14_-_45626237_45626418	1.02018	UCAAGUA	ENSMUST00000227865.2|Gnpnat1|ENSMUSG00000037722.9|glucosamine-phosphate N-acetyltransferase 1	ENSMUST00000226856.2|Gnpnat1|ENSMUSG00000037722.9|glucosamine-phosphate N-acetyltransferase 1	ENSMUST00000226276.2|Gnpnat1|ENSMUSG00000037722.9|glucosamine-phosphate N-acetyltransferase 1	ENSMUST00000046191.9|Gnpnat1|ENSMUSG00000037722.9|glucosamine-phosphate N-acetyltransferase 1
mm39_v1_chr2_+_160487801_160487816	1.01199	UCAAGUA	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr10_+_18283405_18283464	1.01087	UCAAGUA	ENSMUST00000037341.14|Nhsl1|ENSMUSG00000039835.17|NHS-like 1
mm39_v1_chrX_-_107877909_107877987	1.00972	UCAAGUA	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr15_+_96185399_96185487	0.990499	UCAAGUA	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr11_+_16901370_16901418	0.984888	UCAAGUA	ENSMUST00000109635.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48	ENSMUST00000061327.2|Fbxo48|ENSMUSG00000044966.5|F-box protein 48
mm39_v1_chr11_-_84416340_84416369	0.984361	UCAAGUA	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr13_-_34529157_34529257	0.983935	UCAAGUA	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr1_-_36978602_36978613	0.983815	UCAAGUA	ENSMUST00000027290.12|Tmem131|ENSMUSG00000026116.12|transmembrane protein 131
mm39_v1_chr7_+_58878490_58878518	0.974049	UCAAGUA	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr1_-_30988772_30988860	0.9722	UCAAGUA	ENSMUST00000238874.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000027232.15|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000076587.6|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000233506.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1
mm39_v1_chr10_-_66932685_66932738	0.969054	UCAAGUA	ENSMUST00000020023.9|Reep3|ENSMUSG00000019873.9|receptor accessory protein 3
mm39_v1_chr5_-_4154681_4154802	0.961119	UCAAGUA	ENSMUST00000001507.5|Cyp51|ENSMUSG00000001467.6|cytochrome P450, family 51
mm39_v1_chr19_+_21755689_21755727	0.955049	UCAAGUA	ENSMUST00000096194.9|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2	ENSMUST00000025663.8|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2
mm39_v1_chr2_+_172994841_172994873	0.946639	UCAAGUA	ENSMUST00000029017.6|Pck1|ENSMUSG00000027513.12|phosphoenolpyruvate carboxykinase 1, cytosolic
mm39_v1_chr2_-_173118315_173118336	0.935388	UCAAGUA	ENSMUST00000036248.13|Pmepa1|ENSMUSG00000038400.16|prostate transmembrane protein, androgen induced 1
mm39_v1_chr1_-_97589675_97589799	0.931898	UCAAGUA	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr14_+_59438658_59438716	0.930773	UCAAGUA	ENSMUST00000173547.8|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	ENSMUST00000043227.13|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	ENSMUST00000022551.14|Rcbtb1|ENSMUSG00000035469.18|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm39_v1_chr16_+_76810588_76810663	0.927135	UCAAGUA	ENSMUST00000239066.2|Usp25|ENSMUSG00000022867.12|ubiquitin specific peptidase 25	ENSMUST00000023580.8|Usp25|ENSMUSG00000022867.12|ubiquitin specific peptidase 25
mm39_v1_chr14_+_48683797_48683886	0.926017	UCAAGUA	ENSMUST00000111735.10|Tmem260|ENSMUSG00000036339.19|transmembrane protein 260
mm39_v1_chr4_+_15265798_15265831	0.924836	UCAAGUA	ENSMUST00000062684.9|Tmem64|ENSMUSG00000043252.9|transmembrane protein 64
mm39_v1_chr19_+_59446804_59446883	0.920189	UCAAGUA	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr19_+_32734884_32734900	0.912948	UCAAGUA	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr11_+_43572825_43572918	0.903534	UCAAGUA	ENSMUST00000061070.6|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A	ENSMUST00000094294.5|Pwwp2a|ENSMUSG00000044950.8|PWWP domain containing 2A
mm39_v1_chr4_+_116852504_116852539	0.892298	UCAAGUA	ENSMUST00000050067.10|Hectd3|ENSMUSG00000046861.10|HECT domain E3 ubiquitin protein ligase 3
mm39_v1_chr8_-_120828211_120828246	0.883937	UCAAGUA	ENSMUST00000034280.9|Zdhhc7|ENSMUSG00000031823.15|zinc finger, DHHC domain containing 7
mm39_v1_chr17_-_17845293_17845329	0.876105	UCAAGUA	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr13_-_43634695_43634823	0.870847	UCAAGUA	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr7_-_110682204_110682244	0.858057	UCAAGUA	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr10_-_7831979_7832035	0.855026	UCAAGUA	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr4_+_132001680_132001744	0.846488	UCAAGUA	ENSMUST00000030731.11|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12	ENSMUST00000105963.2|Taf12|ENSMUSG00000028899.12|TATA-box binding protein associated factor 12
mm39_v1_chr12_+_81906738_81906814	0.838522	UCAAGUA	ENSMUST00000221721.2|Pcnx|ENSMUSG00000021140.10|pecanex homolog	ENSMUST00000021567.6|Pcnx|ENSMUSG00000021140.10|pecanex homolog
mm39_v1_chr7_-_122969064_122969144	0.837257	UCAAGUA	ENSMUST00000207010.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000167309.8|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000205262.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000106442.9|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000098060.5|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17
mm39_v1_chr1_-_143578542_143578631	0.831878	UCAAGUA	ENSMUST00000018337.9|Cdc73|ENSMUSG00000026361.10|cell division cycle 73, Paf1/RNA polymerase II complex component
mm39_v1_chrX_+_12937714_12937797	0.830869	UCAAGUA	ENSMUST00000169594.9|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome	ENSMUST00000089302.11|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome
mm39_v1_chr10_+_115220826_115220927	0.824945	UCAAGUA	ENSMUST00000036044.9|Zfc3h1|ENSMUSG00000034163.11|zinc finger, C3H1-type containing
mm39_v1_chr1_+_131671751_131671767	0.824653	UCAAGUA	ENSMUST00000049027.10|Slc26a9|ENSMUSG00000042268.11|solute carrier family 26, member 9
mm39_v1_chr16_-_76170714_76170741	0.824467	UCAAGUA	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr15_-_53209513_53209565	0.824169	UCAAGUA	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr17_+_29251602_29251655	0.822035	UCAAGUA	ENSMUST00000130216.3|Srsf3|ENSMUSG00000071172.14|serine and arginine-rich splicing factor 3
mm39_v1_chr16_+_32151056_32151086	0.821983	UCAAGUA	ENSMUST00000115151.5|Ubxn7|ENSMUSG00000053774.10|UBX domain protein 7	ENSMUST00000232137.2|Ubxn7|ENSMUSG00000053774.10|UBX domain protein 7
mm39_v1_chr2_-_125701059_125701141	0.809478	UCAAGUA	ENSMUST00000110463.8|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2	ENSMUST00000028635.6|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2
mm39_v1_chr9_+_102712063_102712190	0.801227	UCAAGUA	ENSMUST00000175883.8|Ryk|ENSMUSG00000032547.13|receptor-like tyrosine kinase	ENSMUST00000035142.8|Ryk|ENSMUSG00000032547.13|receptor-like tyrosine kinase
mm39_v1_chr5_+_124577952_124578061	0.798417	UCAAGUA	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr7_+_78922947_78922973	0.795097	UCAAGUA	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr8_-_80126120_80126168	0.785529	UCAAGUA	ENSMUST00000066091.14|Smad1|ENSMUSG00000031681.17|SMAD family member 1	ENSMUST00000109885.8|Smad1|ENSMUSG00000031681.17|SMAD family member 1
mm39_v1_chr15_-_94487751_94487770	0.780486	UCAAGUA	ENSMUST00000023087.13|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1	ENSMUST00000152590.2|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1
mm39_v1_chr2_+_172391501_172391524	0.77254	UCAAGUA	ENSMUST00000030391.9|Tfap2c|ENSMUSG00000028640.12|transcription factor AP-2, gamma
mm39_v1_chr6_-_38853097_38853167	0.768409	UCAAGUA	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr1_-_190758321_190758395	0.761803	UCAAGUA	ENSMUST00000191946.2|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1	ENSMUST00000085635.6|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1
mm39_v1_chr2_-_28945051_28945095	0.755801	UCAAGUA	ENSMUST00000189711.7|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77	ENSMUST00000157048.4|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77
mm39_v1_chr4_-_58553311_58553357	0.753035	UCAAGUA	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr4_+_95855442_95855558	0.751003	UCAAGUA	ENSMUST00000030306.14|Hook1|ENSMUSG00000028572.14|hook microtubule tethering protein 1
mm39_v1_chr6_+_92793440_92793465	0.748204	UCAAGUA	ENSMUST00000057977.4|A730049H05Rik|ENSMUSG00000048636.8|RIKEN cDNA A730049H05 gene
mm39_v1_chr18_+_78392969_78392969	0.74569	UCAAGUA	ENSMUST00000164064.2|Gm6133|ENSMUSG00000090451.2|predicted gene 6133
mm39_v1_chr11_+_31822211_31822263	0.742481	UCAAGUA	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chrX_-_110372733_110372745	0.73402	UCAAGUA	ENSMUST00000065976.12|Rps6ka6|ENSMUSG00000025665.17|ribosomal protein S6 kinase polypeptide 6
mm39_v1_chr11_+_98754434_98754472	0.727714	UCAAGUA	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr2_+_74656145_74656223	0.718915	UCAAGUA	ENSMUST00000028511.8|Mtx2|ENSMUSG00000027099.10|metaxin 2
mm39_v1_chr4_-_135300934_135300954	0.711881	UCAAGUA	ENSMUST00000105855.2|Grhl3|ENSMUSG00000037188.8|grainyhead like transcription factor 3
mm39_v1_chr12_+_32870334_32870360	0.706434	UCAAGUA	ENSMUST00000020886.9|Nampt|ENSMUSG00000020572.9|nicotinamide phosphoribosyltransferase
mm39_v1_chr13_+_44884740_44884752	0.703045	UCAAGUA	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr5_+_118698689_118698804	0.701486	UCAAGUA	ENSMUST00000100816.8|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like	ENSMUST00000201010.2|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like
mm39_v1_chr9_+_108539296_108539418	0.695773	UCAAGUA	ENSMUST00000035222.6|Slc25a20|ENSMUSG00000032602.7|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm39_v1_chr10_+_34265969_34265985	0.68949	UCAAGUA	ENSMUST00000105511.2|Col10a1|ENSMUSG00000039462.5|collagen, type X, alpha 1
mm39_v1_chr18_-_66135683_66135714	0.682518	UCAAGUA	ENSMUST00000120461.9|Lman1|ENSMUSG00000041891.17|lectin, mannose-binding, 1	ENSMUST00000048260.15|Lman1|ENSMUSG00000041891.17|lectin, mannose-binding, 1	ENSMUST00000236866.2|Lman1|ENSMUSG00000041891.17|lectin, mannose-binding, 1
mm39_v1_chr18_-_36330367_36330433	0.66104	UCAAGUA	ENSMUST00000115713.9|Nrg2|ENSMUSG00000060275.15|neuregulin 2
mm39_v1_chr15_+_54975713_54975799	0.65694	UCAAGUA	ENSMUST00000096433.10|Deptor|ENSMUSG00000022419.17|DEP domain containing MTOR-interacting protein
mm39_v1_chr19_+_53517528_53517545	0.649071	UCAAGUA	ENSMUST00000038287.7|Dusp5|ENSMUSG00000034765.7|dual specificity phosphatase 5
mm39_v1_chr1_+_138891447_138891539	0.644037	UCAAGUA	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chrX_-_56438380_56438400	0.629204	UCAAGUA	ENSMUST00000143310.2|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome	ENSMUST00000098470.9|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome	ENSMUST00000114726.8|Rbmx|ENSMUSG00000031134.17|RNA binding motif protein, X chromosome
mm39_v1_chr5_-_31337453_31337502	0.617622	UCAAGUA	ENSMUST00000202639.4|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta	ENSMUST00000088010.12|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta
mm39_v1_chr4_-_134014525_134014575	0.613663	UCAAGUA	ENSMUST00000145006.8|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105877.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000127857.2|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105876.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like
mm39_v1_chr10_+_128212953_128213024	0.597598	UCAAGUA	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr4_+_116578117_116578201	0.594777	UCAAGUA	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr18_+_63055388_63055410	0.589109	UCAAGUA	ENSMUST00000096554.12|Apcdd1|ENSMUSG00000071847.14|adenomatosis polyposis coli down-regulated 1	ENSMUST00000163716.3|Apcdd1|ENSMUSG00000071847.14|adenomatosis polyposis coli down-regulated 1
mm39_v1_chr11_+_73158214_73158363	0.588522	UCAAGUA	ENSMUST00000049676.3|Trpv3|ENSMUSG00000043029.3|transient receptor potential cation channel, subfamily V, member 3
mm39_v1_chr1_+_133058881_133058992	0.587282	UCAAGUA	ENSMUST00000052529.4|Ppp1r15b|ENSMUSG00000046062.6|protein phosphatase 1, regulatory subunit 15B
mm39_v1_chr1_-_10302895_10302895	0.573932	UCAAGUA	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr19_+_55730696_55730774	0.569284	UCAAGUA	ENSMUST00000153888.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000127233.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000061496.17|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111656.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111657.11|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chr10_+_87695117_87695128	0.568204	UCAAGUA	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr2_+_53082079_53082140	0.566865	UCAAGUA	ENSMUST00000028336.7|Arl6ip6|ENSMUSG00000026960.7|ADP-ribosylation factor-like 6 interacting protein 6
mm39_v1_chr4_+_132366298_132366430	0.556911	UCAAGUA	ENSMUST00000135299.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000020197.14|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000180250.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000081726.13|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000079157.11|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3
mm39_v1_chr8_-_103512274_103512408	0.553918	UCAAGUA	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr15_+_6416229_6416270	0.547186	UCAAGUA	ENSMUST00000110664.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000110663.9|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000161812.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein	ENSMUST00000160134.8|Dab2|ENSMUSG00000022150.17|disabled 2, mitogen-responsive phosphoprotein
mm39_v1_chr13_+_9143995_9144018	0.53151	UCAAGUA	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chr3_-_122778052_122778163	0.529168	UCAAGUA	ENSMUST00000199401.2|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197314.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197934.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000090379.7|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53
mm39_v1_chr4_-_126630028_126630039	0.514552	UCAAGUA	ENSMUST00000048194.8|Tfap2e|ENSMUSG00000042477.8|transcription factor AP-2, epsilon
mm39_v1_chr10_-_88192852_88192969	0.507964	UCAAGUA	ENSMUST00000020249.2|Dram1|ENSMUSG00000020057.3|DNA-damage regulated autophagy modulator 1
mm39_v1_chr16_-_97763780_97763836	0.498676	UCAAGUA	ENSMUST00000232187.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000232165.2|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2	ENSMUST00000231263.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000052089.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000063605.15|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000113734.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000231560.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21
mm39_v1_chr10_-_100323122_100323230	0.491979	UCAAGUA	ENSMUST00000128009.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000134477.2|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000099318.10|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3	ENSMUST00000058154.15|Tmtc3|ENSMUSG00000036676.15|transmembrane and tetratricopeptide repeat containing 3
mm39_v1_chr3_-_105708632_105708694	0.489689	UCAAGUA	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr1_+_187730018_187730031	0.488363	UCAAGUA	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr1_+_105918383_105918450	0.487085	UCAAGUA	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr3_+_58322119_58322161	0.479724	UCAAGUA	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr11_-_5331734_5331745	0.467917	UCAAGUA	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr6_+_14901343_14901363	0.456053	UCAAGUA	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr5_-_124563969_124564011	0.444279	UCAAGUA	ENSMUST00000065263.12|Sbno1|ENSMUSG00000038095.16|strawberry notch 1
mm39_v1_chr2_+_38401655_38401764	0.444265	UCAAGUA	ENSMUST00000054234.10|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6	ENSMUST00000112902.8|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6
mm39_v1_chr17_-_22580381_22580381	0.434607	UCAAGUA	ENSMUST00000115535.3|Zfp944|ENSMUSG00000033972.10|zinc finger protein 944
mm39_v1_chr14_-_75185281_75185324	0.429916	UCAAGUA	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr1_-_133849131_133849152	0.428263	UCAAGUA	ENSMUST00000048432.6|Prelp|ENSMUSG00000041577.6|proline arginine-rich end leucine-rich repeat
mm39_v1_chr7_+_100757940_100757961	0.425091	UCAAGUA	ENSMUST00000032931.9|Fchsd2|ENSMUSG00000030691.16|FCH and double SH3 domains 2
mm39_v1_chr17_-_75858835_75858941	0.424704	UCAAGUA	ENSMUST00000234785.2|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A	ENSMUST00000112507.4|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A
mm39_v1_chr2_-_167503416_167503502	0.418871	UCAAGUA	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr8_+_124380639_124380668	0.407574	UCAAGUA	ENSMUST00000045487.4|Rhou|ENSMUSG00000039960.6|ras homolog family member U
mm39_v1_chr4_-_126096551_126096554	0.406086	UCAAGUA	ENSMUST00000080919.12|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr10_+_52293617_52293677	0.392918	UCAAGUA	ENSMUST00000023830.16|Nus1|ENSMUSG00000023068.17|NUS1 dehydrodolichyl diphosphate synthase subunit
mm39_v1_chr3_+_16237371_16237447	0.391412	UCAAGUA	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr16_+_43993599_43993760	0.379387	UCAAGUA	ENSMUST00000119746.8|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000088356.10|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3	ENSMUST00000169582.3|Usf3|ENSMUSG00000068284.15|upstream transcription factor family member 3
mm39_v1_chr5_+_33978035_33978173	0.37135	UCAAGUA	ENSMUST00000075812.11|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000114397.9|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000155880.8|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2
mm39_v1_chr9_-_96993169_96993214	0.368873	UCAAGUA	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr4_+_138920210_138920271	0.366066	UCAAGUA	ENSMUST00000102508.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000131912.8|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000102507.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta
mm39_v1_chr19_-_44058175_44058226	0.365686	UCAAGUA	ENSMUST00000172041.8|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1	ENSMUST00000071698.13|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1	ENSMUST00000112028.10|Erlin1|ENSMUSG00000025198.17|ER lipid raft associated 1
mm39_v1_chr3_+_130904000_130904120	0.35213	UCAAGUA	ENSMUST00000029611.14|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000106341.9|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000066849.13|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1
mm39_v1_chr1_+_156386414_156386619	0.348844	UCAAGUA	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr10_-_27492827_27492887	0.347873	UCAAGUA	ENSMUST00000092639.12|Lama2|ENSMUSG00000019899.18|laminin, alpha 2
mm39_v1_chr19_-_53378990_53379012	0.344698	UCAAGUA	ENSMUST00000025997.7|Smndc1|ENSMUSG00000025024.8|survival motor neuron domain containing 1
mm39_v1_chr10_+_84938452_84938491	0.344464	UCAAGUA	ENSMUST00000095383.6|Tmem263|ENSMUSG00000060935.7|transmembrane protein 263
mm39_v1_chr8_-_86281946_86282003	0.341022	UCAAGUA	ENSMUST00000034138.7|Dnaja2|ENSMUSG00000031701.7|DnaJ heat shock protein family (Hsp40) member A2
mm39_v1_chr9_+_78020554_78020659	0.3354	UCAAGUA	ENSMUST00000009972.6|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1	ENSMUST00000117330.8|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1	ENSMUST00000044551.8|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1
mm39_v1_chr18_+_10325148_10325222	0.329349	UCAAGUA	ENSMUST00000048977.16|Greb1l|ENSMUSG00000042942.19|growth regulation by estrogen in breast cancer-like
mm39_v1_chr9_-_15023396_15023415	0.319641	UCAAGUA	ENSMUST00000159985.2|Hephl1|ENSMUSG00000031936.10|hephaestin-like 1
mm39_v1_chr11_+_4085164_4085222	0.314672	UCAAGUA	ENSMUST00000003677.11|Rnf215|ENSMUSG00000003581.15|ring finger protein 215	ENSMUST00000145705.8|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr4_+_83443777_83443851	0.309213	UCAAGUA	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr11_+_77107006_77107113	0.308012	UCAAGUA	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chrX_+_52001108_52001238	0.306975	UCAAGUA	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr15_-_9140460_9140526	0.305357	UCAAGUA	ENSMUST00000110585.10|Skp2|ENSMUSG00000054115.13|S-phase kinase-associated protein 2
mm39_v1_chr9_-_62888156_62888184	0.300502	UCAAGUA	ENSMUST00000098651.6|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1	ENSMUST00000214830.2|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1
mm39_v1_chr11_-_60804601_60804642	0.297377	UCAAGUA	ENSMUST00000019075.4|Natd1|ENSMUSG00000018931.4|N-acetyltransferase domain containing 1
mm39_v1_chr6_+_146992877_146993036	0.294392	UCAAGUA	ENSMUST00000036003.8|Klhl42|ENSMUSG00000040102.11|kelch-like 42
mm39_v1_chr4_+_137943603_137943636	0.288666	UCAAGUA	ENSMUST00000105827.8|Hp1bp3|ENSMUSG00000028759.14|heterochromatin protein 1, binding protein 3
mm39_v1_chr4_+_54947976_54948054	0.286945	UCAAGUA	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr1_-_95595280_95595323	0.283799	UCAAGUA	ENSMUST00000043336.11|St8sia4|ENSMUSG00000040710.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm39_v1_chr14_-_8457069_8457272	0.283322	UCAAGUA	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr11_-_29464998_29465043	0.281024	UCAAGUA	ENSMUST00000133103.2|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1	ENSMUST00000039900.4|Prorsd1|ENSMUSG00000032673.6|prolyl-tRNA synthetase domain containing 1
mm39_v1_chr5_-_110918393_110918495	0.279315	UCAAGUA	ENSMUST00000041558.15|Ep400|ENSMUSG00000029505.18|E1A binding protein p400	ENSMUST00000146458.9|Ep400|ENSMUSG00000029505.18|E1A binding protein p400
mm39_v1_chr10_-_56104732_56104791	0.274116	UCAAGUA	ENSMUST00000099739.5|Tbc1d32|ENSMUSG00000038122.10|TBC1 domain family, member 32
mm39_v1_chr10_+_4561974_4562075	0.268963	UCAAGUA	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr16_-_5021843_5021881	0.264294	UCAAGUA	ENSMUST00000147567.2|Nagpa|ENSMUSG00000023143.11|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	ENSMUST00000023911.11|Nagpa|ENSMUSG00000023143.11|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
mm39_v1_chr16_+_38562616_38562683	0.263399	UCAAGUA	ENSMUST00000023482.13|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000114712.8|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000231655.2|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm39_v1_chr3_+_84500854_84500881	0.262742	UCAAGUA	ENSMUST00000062623.4|Tigd4|ENSMUSG00000047819.4|tigger transposable element derived 4
mm39_v1_chr10_-_128727542_128727587	0.250874	UCAAGUA	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr5_+_16758777_16758795	0.246033	UCAAGUA	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr11_+_57899890_57899915	0.235386	UCAAGUA	ENSMUST00000071487.13|Larp1|ENSMUSG00000037331.16|La ribonucleoprotein domain family, member 1	ENSMUST00000178636.2|Larp1|ENSMUSG00000037331.16|La ribonucleoprotein domain family, member 1
mm39_v1_chr17_+_26934617_26934698	0.234379	UCAAGUA	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr10_-_121312212_121312252	0.233358	UCAAGUA	ENSMUST00000026902.9|Rassf3|ENSMUSG00000025795.9|Ras association (RalGDS/AF-6) domain family member 3
mm39_v1_chr9_+_70586232_70586292	0.231511	UCAAGUA	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr5_-_124492734_124492839	0.229069	UCAAGUA	ENSMUST00000031341.11|Cdk2ap1|ENSMUSG00000029394.12|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm39_v1_chr14_-_73563212_73563276	0.227508	UCAAGUA	ENSMUST00000022701.7|Rb1|ENSMUSG00000022105.7|RB transcriptional corepressor 1
mm39_v1_chr8_+_126396557_126396613	0.220889	UCAAGUA	ENSMUST00000053078.5|Map10|ENSMUSG00000050930.6|microtubule-associated protein 10
mm39_v1_chrX_+_18028814_18028897	0.218532	UCAAGUA	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr13_-_64518112_64518127	0.213369	UCAAGUA	ENSMUST00000021933.8|Ctsl|ENSMUSG00000021477.10|cathepsin L	ENSMUST00000222462.2|Ctsl|ENSMUSG00000021477.10|cathepsin L
mm39_v1_chr5_+_124767114_124767162	0.213159	UCAAGUA	ENSMUST00000037865.13|Atp6v0a2|ENSMUSG00000038023.13|ATPase, H+ transporting, lysosomal V0 subunit A2
mm39_v1_chr6_-_143045493_143045583	0.213008	UCAAGUA	ENSMUST00000204655.3|C2cd5|ENSMUSG00000030279.16|C2 calcium-dependent domain containing 5	ENSMUST00000111758.9|C2cd5|ENSMUSG00000030279.16|C2 calcium-dependent domain containing 5
mm39_v1_chr16_+_58548273_58548426	0.211713	UCAAGUA	ENSMUST00000023426.12|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162057.8|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162191.2|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1
mm39_v1_chr19_+_11889752_11889839	0.210365	UCAAGUA	ENSMUST00000061618.9|Patl1|ENSMUSG00000046139.9|protein associated with topoisomerase II homolog 1 (yeast)
mm39_v1_chr2_-_160950936_160950950	0.204727	UCAAGUA	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chrX_-_133062677_133062677	0.204547	UCAAGUA	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr3_+_146110387_146110487	0.203507	UCAAGUA	ENSMUST00000106151.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106153.9|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000039021.11|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106149.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000149262.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein
mm39_v1_chr4_+_150366028_150366103	0.202792	UCAAGUA	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr11_-_79971750_79971828	0.199845	UCAAGUA	ENSMUST00000103233.10|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3	ENSMUST00000061283.15|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3
mm39_v1_chr1_-_30912662_30912738	0.198484	UCAAGUA	ENSMUST00000186733.7|Phf3|ENSMUSG00000048874.16|PHD finger protein 3
mm39_v1_chr6_-_120015608_120015660	0.197055	UCAAGUA	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr5_-_3852857_3852925	0.192455	UCAAGUA	ENSMUST00000043551.11|Ankib1|ENSMUSG00000040351.12|ankyrin repeat and IBR domain containing 1
mm39_v1_chr9_+_57428490_57428613	0.188785	UCAAGUA	ENSMUST00000000090.8|Cox5a|ENSMUSG00000000088.8|cytochrome c oxidase subunit 5A
mm39_v1_chr5_-_92231314_92231416	0.180706	UCAAGUA	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr11_+_107438751_107438794	0.179784	UCAAGUA	ENSMUST00000100305.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain	ENSMUST00000075012.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain	ENSMUST00000106746.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain
mm39_v1_chr3_-_41037427_41037481	0.177181	UCAAGUA	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr11_-_11987391_11987407	0.165289	UCAAGUA	ENSMUST00000093321.12|Grb10|ENSMUSG00000020176.18|growth factor receptor bound protein 10
mm39_v1_chr11_-_76400245_76400261	0.164674	UCAAGUA	ENSMUST00000094012.11|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr4_+_131649001_131649082	0.159546	UCAAGUA	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr13_-_93328719_93328835	0.147799	UCAAGUA	ENSMUST00000048702.7|Tent2|ENSMUSG00000042167.7|terminal nucleotidyltransferase 2
mm39_v1_chr1_-_74544946_74545004	0.14769	UCAAGUA	ENSMUST00000044260.11|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37	ENSMUST00000186282.7|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37
mm39_v1_chr12_+_101942222_101942263	0.145826	UCAAGUA	ENSMUST00000047357.10|Cpsf2|ENSMUSG00000041781.10|cleavage and polyadenylation specific factor 2
mm39_v1_chr13_+_12580743_12580764	0.142323	UCAAGUA	ENSMUST00000221560.2|Ero1b|ENSMUSG00000057069.8|endoplasmic reticulum oxidoreductase 1 beta	ENSMUST00000071973.8|Ero1b|ENSMUSG00000057069.8|endoplasmic reticulum oxidoreductase 1 beta
mm39_v1_chr9_-_103242096_103242164	0.135192	UCAAGUA	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr12_-_85386120_85386169	0.133673	UCAAGUA	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr7_+_127344942_127344999	0.12894	UCAAGUA	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr3_-_100592747_100592819	0.123909	UCAAGUA	ENSMUST00000008907.14|Man1a2|ENSMUSG00000008763.17|mannosidase, alpha, class 1A, member 2
mm39_v1_chr1_+_64571942_64572013	0.120989	UCAAGUA	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr8_+_36054919_36054981	0.112889	UCAAGUA	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr1_-_59276252_59276416	0.110911	UCAAGUA	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr9_-_101128976_101129003	0.108851	UCAAGUA	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr12_+_111504450_111504633	0.10879	UCAAGUA	ENSMUST00000166123.9|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5	ENSMUST00000222441.2|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5
mm39_v1_chr5_+_134128543_134128635	0.103518	UCAAGUA	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr18_-_35064906_35065066	0.102092	UCAAGUA	ENSMUST00000025218.8|Etf1|ENSMUSG00000024360.9|eukaryotic translation termination factor 1
mm39_v1_chrX_-_138772383_138772426	0.0917861	UCAAGUA	ENSMUST00000033811.14|Morc4|ENSMUSG00000031434.16|microrchidia 4	ENSMUST00000087401.12|Morc4|ENSMUSG00000031434.16|microrchidia 4
mm39_v1_chr6_-_30873669_30873729	0.0903734	UCAAGUA	ENSMUST00000048774.13|Copg2|ENSMUSG00000025607.16|coatomer protein complex, subunit gamma 2	ENSMUST00000166192.7|Copg2|ENSMUSG00000025607.16|coatomer protein complex, subunit gamma 2
mm39_v1_chr5_-_88823989_88824045	0.0899058	UCAAGUA	ENSMUST00000078945.12|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr16_+_33201164_33201206	0.0892905	UCAAGUA	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr2_+_11176891_11176942	0.0890466	UCAAGUA	ENSMUST00000028118.9|Prkcq|ENSMUSG00000026778.14|protein kinase C, theta
mm39_v1_chr14_-_24295988_24295988	0.0755657	UCAAGUA	ENSMUST00000073687.13|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5	ENSMUST00000090398.11|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5
mm39_v1_chr5_-_64126194_64126247	0.0733796	UCAAGUA	ENSMUST00000154169.4|Rell1|ENSMUSG00000047881.15|RELT-like 1
mm39_v1_chr10_-_45346297_45346386	0.0712681	UCAAGUA	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chrX_-_144288071_144288224	0.0690261	UCAAGUA	ENSMUST00000112835.8|Amot|ENSMUSG00000041688.17|angiomotin	ENSMUST00000143610.3|Amot|ENSMUSG00000041688.17|angiomotin
mm39_v1_chr16_+_91343936_91344002	0.0676123	UCAAGUA	ENSMUST00000023687.9|Ifngr2|ENSMUSG00000022965.9|interferon gamma receptor 2
mm39_v1_chr1_+_131838294_131838310	0.0645274	UCAAGUA	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr16_-_23807602_23807602	0.0636657	UCAAGUA	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chrX_+_84617624_84617756	0.0629542	UCAAGUA	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr13_+_46822992_46823022	0.0627991	UCAAGUA	ENSMUST00000099547.4|Fam8a1|ENSMUSG00000069237.9|family with sequence similarity 8, member A1
mm39_v1_chr2_-_11506893_11506936	0.0584273	UCAAGUA	ENSMUST00000114845.10|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000171188.9|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000179584.8|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000028114.13|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000114846.9|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000170196.9|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000191668.6|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000049849.12|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000114844.8|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	ENSMUST00000100411.4|Pfkfb3|ENSMUSG00000026773.20|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm39_v1_chr1_+_151631088_151631148	0.0539146	UCAAGUA	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr6_-_72416531_72416548	0.0537237	UCAAGUA	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr1_-_4566619_4566643	0.0509383	UCAAGUA	ENSMUST00000192913.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000027035.10|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chr4_+_33031342_33031430	0.0508187	UCAAGUA	ENSMUST00000124992.8|Ube2j1|ENSMUSG00000028277.14|ubiquitin-conjugating enzyme E2J 1
mm39_v1_chr3_-_75464066_75464178	0.0503544	UCAAGUA	ENSMUST00000162138.2|Pdcd10|ENSMUSG00000027835.12|programmed cell death 10	ENSMUST00000029424.12|Pdcd10|ENSMUSG00000027835.12|programmed cell death 10	ENSMUST00000161137.8|Pdcd10|ENSMUSG00000027835.12|programmed cell death 10
mm39_v1_chr5_+_135197137_135197227	0.0390551	UCAAGUA	ENSMUST00000031692.12|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr4_-_94491473_94491490	0.0367237	UCAAGUA	ENSMUST00000107107.9|Plaa|ENSMUSG00000028577.14|phospholipase A2, activating protein
mm39_v1_chr10_+_84412490_84412490	0.0366954	UCAAGUA	ENSMUST00000020223.8|Tcp11l2|ENSMUSG00000020034.8|t-complex 11 (mouse) like 2
mm39_v1_chrX_-_10083157_10083160	0.0310284	UCAAGUA	ENSMUST00000072393.9|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000044598.13|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000073392.11|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115533.8|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115532.2|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator
mm39_v1_chr8_+_95328558_95328631	0.0200864	UCAAGUA	ENSMUST00000060389.10|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000212729.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000121101.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1
mm39_v1_chr3_+_40594899_40594939	0.0170085	UCAAGUA	ENSMUST00000091186.7|Intu|ENSMUSG00000060798.8|inturned planar cell polarity protein
mm39_v1_chrX_+_102400061_102400094	0.0157053	UCAAGUA	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr3_-_104960437_104960467	0.00685254	UCAAGUA	ENSMUST00000077548.12|Cttnbp2nl|ENSMUSG00000062127.12|CTTNBP2 N-terminal like
mm39_v1_chr11_+_32405367_32405438	0.00447822	UCAAGUA	ENSMUST00000051053.5|Ubtd2|ENSMUSG00000044949.5|ubiquitin domain containing 2
