mm39_v1_chr8_+_23901506_23901523	2.30454	UCACAGU	ENSMUST00000033952.8|Sfrp1|ENSMUSG00000031548.8|secreted frizzled-related protein 1
mm39_v1_chr2_-_103133524_103133623	2.17642	UCACAGU	ENSMUST00000090475.10|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chrX_+_135171002_135171018	2.09066	UCACAGU	ENSMUST00000178632.8|Bex3|ENSMUSG00000046432.13|brain expressed X-linked 3	ENSMUST00000053540.11|Bex3|ENSMUSG00000046432.13|brain expressed X-linked 3
mm39_v1_chr2_-_140513382_140513399	2.05408	UCACAGU	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr17_+_73225292_73225311	1.95694	UCACAGU	ENSMUST00000024857.14|Lbh|ENSMUSG00000024063.14|limb-bud and heart
mm39_v1_chr5_-_114829032_114829058	1.90391	UCACAGU	ENSMUST00000012028.14|Gltp|ENSMUSG00000011884.14|glycolipid transfer protein
mm39_v1_chr2_-_113588983_113589000	1.84801	UCACAGU	ENSMUST00000099575.4|Grem1|ENSMUSG00000074934.4|gremlin 1, DAN family BMP antagonist
mm39_v1_chr1_-_134006847_134006862	1.80156	UCACAGU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr8_-_24928953_24929000	1.76875	UCACAGU	ENSMUST00000052622.6|Tcim|ENSMUSG00000056313.6|transcriptional and immune response regulator
mm39_v1_chr17_-_80022463_80022476	1.74545	UCACAGU	ENSMUST00000024894.2|Cyp1b1|ENSMUSG00000024087.5|cytochrome P450, family 1, subfamily b, polypeptide 1
mm39_v1_chr6_-_52181393_52181567	1.68438	UCACAGU	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr5_+_75312939_75312967	1.66526	UCACAGU	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr9_-_31043076_31043149	1.6513	UCACAGU	ENSMUST00000034478.3|St14|ENSMUSG00000031995.10|suppression of tumorigenicity 14 (colon carcinoma)
mm39_v1_chr1_+_86230931_86230997	1.59006	UCACAGU	ENSMUST00000113306.4|B3gnt7|ENSMUSG00000079445.4|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm39_v1_chr4_-_136563154_136563299	1.53662	UCACAGU	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chr14_+_73475335_73475447	1.53319	UCACAGU	ENSMUST00000044405.8|Lpar6|ENSMUSG00000033446.8|lysophosphatidic acid receptor 6
mm39_v1_chr17_+_26633794_26633939	1.44869	UCACAGU	ENSMUST00000182897.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000183077.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B	ENSMUST00000053020.8|Neurl1b|ENSMUSG00000034413.15|neuralized E3 ubiquitin protein ligase 1B
mm39_v1_chr13_-_95386776_95386844	1.39878	UCACAGU	ENSMUST00000162153.9|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000160957.9|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000159598.2|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B	ENSMUST00000162412.8|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B
mm39_v1_chrX_+_40490005_40490181	1.3984	UCACAGU	ENSMUST00000115103.9|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)	ENSMUST00000076349.12|Gria3|ENSMUSG00000001986.17|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm39_v1_chr6_+_141194886_141194995	1.39394	UCACAGU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr3_-_36626101_36626299	1.38418	UCACAGU	ENSMUST00000029270.10|Ccna2|ENSMUSG00000027715.10|cyclin A2
mm39_v1_chr13_-_115068626_115068645	1.34642	UCACAGU	ENSMUST00000056117.10|Itga2|ENSMUSG00000015533.10|integrin alpha 2
mm39_v1_chr5_+_101912939_101913014	1.34008	UCACAGU	ENSMUST00000031273.9|Cds1|ENSMUSG00000029330.9|CDP-diacylglycerol synthase 1
mm39_v1_chr11_-_87249837_87249901	1.31054	UCACAGU	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr1_-_144124871_144124980	1.28967	UCACAGU	ENSMUST00000189061.7|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chrX_-_7054952_7054981	1.25725	UCACAGU	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr2_-_17735847_17735898	1.23885	UCACAGU	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr10_-_14420725_14420780	1.22758	UCACAGU	ENSMUST00000041168.6|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6	ENSMUST00000238680.2|Adgrg6|ENSMUSG00000039116.8|adhesion G protein-coupled receptor G6
mm39_v1_chr13_+_55357585_55357602	1.22163	UCACAGU	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr14_-_106134253_106134253	1.19853	UCACAGU	ENSMUST00000022709.6|Spry2|ENSMUSG00000022114.6|sprouty RTK signaling antagonist 2
mm39_v1_chr8_-_103512274_103512408	1.19454	UCACAGU	ENSMUST00000075190.5|Cdh11|ENSMUSG00000031673.7|cadherin 11
mm39_v1_chr17_+_33743144_33743218	1.17039	UCACAGU	ENSMUST00000087623.13|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234715.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234497.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm39_v1_chr1_-_88629843_88629943	1.14576	UCACAGU	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chrX_+_95139639_95139662	1.12173	UCACAGU	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr5_+_99002293_99002325	1.10172	UCACAGU	ENSMUST00000031278.6|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3	ENSMUST00000200388.2|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3
mm39_v1_chr11_-_79145489_79145506	1.09987	UCACAGU	ENSMUST00000017821.12|Wsb1|ENSMUSG00000017677.12|WD repeat and SOCS box-containing 1
mm39_v1_chr2_-_181240921_181241028	1.09939	UCACAGU	ENSMUST00000060173.9|Samd10|ENSMUSG00000038605.12|sterile alpha motif domain containing 10
mm39_v1_chr17_-_25155868_25155976	1.08894	UCACAGU	ENSMUST00000115228.9|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000117509.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000121723.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000119115.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000121787.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000088345.12|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000120035.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000115229.10|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3	ENSMUST00000178969.8|Mapk8ip3|ENSMUSG00000024163.18|mitogen-activated protein kinase 8 interacting protein 3
mm39_v1_chr16_+_10884156_10884247	1.08822	UCACAGU	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr3_+_8574420_8574620	1.08464	UCACAGU	ENSMUST00000029002.9|Stmn2|ENSMUSG00000027500.11|stathmin-like 2
mm39_v1_chr17_+_14499768_14499775	1.08411	UCACAGU	ENSMUST00000024660.9|Smoc2|ENSMUSG00000023886.11|SPARC related modular calcium binding 2
mm39_v1_chr4_+_32657105_32657167	1.07915	UCACAGU	ENSMUST00000071642.11|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1	ENSMUST00000178134.2|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1
mm39_v1_chr12_+_79075924_79076002	1.07902	UCACAGU	ENSMUST00000039928.7|Plekhh1|ENSMUSG00000060716.8|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm39_v1_chr2_+_125514997_125515053	1.07044	UCACAGU	ENSMUST00000164756.4|Eid1|ENSMUSG00000091337.4|EP300 interacting inhibitor of differentiation 1
mm39_v1_chr6_-_53797748_53797822	1.05564	UCACAGU	ENSMUST00000127748.5|Tril|ENSMUSG00000043496.8|TLR4 interactor with leucine-rich repeats
mm39_v1_chr9_-_42035560_42035631	1.04158	UCACAGU	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr10_-_90918515_90918525	1.03987	UCACAGU	ENSMUST00000159110.8|Apaf1|ENSMUSG00000019979.13|apoptotic peptidase activating factor 1
mm39_v1_chr9_-_56151334_56151382	1.03908	UCACAGU	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr8_-_58106057_58106074	1.02377	UCACAGU	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr19_+_53517528_53517545	1.02115	UCACAGU	ENSMUST00000038287.7|Dusp5|ENSMUSG00000034765.7|dual specificity phosphatase 5
mm39_v1_chr6_-_58884038_58884083	1.01949	UCACAGU	ENSMUST00000059539.5|Nap1l5|ENSMUSG00000055430.5|nucleosome assembly protein 1-like 5
mm39_v1_chr7_-_68398989_68398998	1.01798	UCACAGU	ENSMUST00000048068.15|Arrdc4|ENSMUSG00000042659.16|arrestin domain containing 4
mm39_v1_chr9_+_57847387_57847403	1.01131	UCACAGU	ENSMUST00000043059.9|Sema7a|ENSMUSG00000038264.9|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
mm39_v1_chr5_+_93241287_93241310	1.01074	UCACAGU	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chrX_+_94942639_94942639	0.999157	UCACAGU	ENSMUST00000082183.8|Zc3h12b|ENSMUSG00000035045.18|zinc finger CCCH-type containing 12B
mm39_v1_chr16_-_38370535_38370620	0.994489	UCACAGU	ENSMUST00000036210.7|Poglut1|ENSMUSG00000034064.15|protein O-glucosyltransferase 1
mm39_v1_chr11_+_73158214_73158363	0.990188	UCACAGU	ENSMUST00000049676.3|Trpv3|ENSMUSG00000043029.3|transient receptor potential cation channel, subfamily V, member 3
mm39_v1_chr18_+_61044830_61044852	0.987949	UCACAGU	ENSMUST00000040359.6|Arsi|ENSMUSG00000036412.6|arylsulfatase i
mm39_v1_chr10_+_98750978_98751034	0.984816	UCACAGU	ENSMUST00000020107.8|Atp2b1|ENSMUSG00000019943.11|ATPase, Ca++ transporting, plasma membrane 1
mm39_v1_chr4_-_111759951_111760115	0.98268	UCACAGU	ENSMUST00000102719.8|Slc5a9|ENSMUSG00000028544.15|solute carrier family 5 (sodium/glucose cotransporter), member 9	ENSMUST00000102721.8|Slc5a9|ENSMUSG00000028544.15|solute carrier family 5 (sodium/glucose cotransporter), member 9
mm39_v1_chr8_+_111448092_111448118	0.981082	UCACAGU	ENSMUST00000052457.15|Mtss2|ENSMUSG00000033763.15|MTSS I-BAR domain containing 2
mm39_v1_chrX_-_104973003_104973014	0.968181	UCACAGU	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr13_+_104424359_104424432	0.967203	UCACAGU	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr7_-_29204812_29204898	0.960542	UCACAGU	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr18_-_47501897_47501945	0.953224	UCACAGU	ENSMUST00000019791.14|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000115449.9|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr9_-_107486381_107486446	0.946868	UCACAGU	ENSMUST00000102531.7|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102530.8|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000195057.2|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102532.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr6_+_66873381_66873533	0.934066	UCACAGU	ENSMUST00000043148.13|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114228.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114227.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114226.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000204511.3|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114225.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114224.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114222.4|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12
mm39_v1_chr3_-_50398027_50398063	0.912117	UCACAGU	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr3_+_96088467_96088483	0.908382	UCACAGU	ENSMUST00000035371.9|Sv2a|ENSMUSG00000038486.10|synaptic vesicle glycoprotein 2 a
mm39_v1_chr13_+_20274708_20274803	0.897361	UCACAGU	ENSMUST00000072519.7|Elmo1|ENSMUSG00000041112.18|engulfment and cell motility 1
mm39_v1_chr3_+_61269059_61269059	0.895394	UCACAGU	ENSMUST00000049064.4|Rap2b|ENSMUSG00000036894.4|RAP2B, member of RAS oncogene family
mm39_v1_chrX_-_7607527_7607580	0.891171	UCACAGU	ENSMUST00000033490.13|Ccdc120|ENSMUSG00000031150.14|coiled-coil domain containing 120
mm39_v1_chr1_+_152275575_152275643	0.882313	UCACAGU	ENSMUST00000044311.9|Colgalt2|ENSMUSG00000032649.15|collagen beta(1-O)galactosyltransferase 2
mm39_v1_chr12_+_108376801_108376844	0.879919	UCACAGU	ENSMUST00000054955.14|Eml1|ENSMUSG00000058070.15|echinoderm microtubule associated protein like 1
mm39_v1_chr7_-_83735702_83735717	0.878381	UCACAGU	ENSMUST00000064174.12|Cemip|ENSMUSG00000052353.14|cell migration inducing protein, hyaluronan binding
mm39_v1_chr8_+_110595216_110595243	0.864913	UCACAGU	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr9_-_96513529_96513670	0.861675	UCACAGU	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr10_+_58091287_58091361	0.8604	UCACAGU	ENSMUST00000057659.14|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2	ENSMUST00000162041.8|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2	ENSMUST00000162860.8|Gcc2|ENSMUSG00000038039.14|GRIP and coiled-coil domain containing 2
mm39_v1_chr1_-_143652711_143652806	0.858693	UCACAGU	ENSMUST00000159879.2|Ro60|ENSMUSG00000018199.10|Ro60, Y RNA binding protein
mm39_v1_chr1_+_136059101_136059142	0.858183	UCACAGU	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr8_-_8711211_8711250	0.844392	UCACAGU	ENSMUST00000001319.15|Efnb2|ENSMUSG00000001300.17|ephrin B2
mm39_v1_chr5_-_107437427_107437514	0.81538	UCACAGU	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr4_+_126915104_126915133	0.812715	UCACAGU	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr1_+_62742444_62742511	0.812178	UCACAGU	ENSMUST00000102822.9|Nrp2|ENSMUSG00000025969.16|neuropilin 2	ENSMUST00000075144.12|Nrp2|ENSMUSG00000025969.16|neuropilin 2
mm39_v1_chr2_-_9883391_9883418	0.808339	UCACAGU	ENSMUST00000102976.4|Gata3|ENSMUSG00000015619.11|GATA binding protein 3
mm39_v1_chr2_-_39080701_39080762	0.801837	UCACAGU	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr12_-_5425682_5425705	0.800818	UCACAGU	ENSMUST00000020958.9|Klhl29|ENSMUSG00000020627.11|kelch-like 29
mm39_v1_chr13_-_103911092_103911139	0.800437	UCACAGU	ENSMUST00000074616.7|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr3_-_89245297_89245374	0.792982	UCACAGU	ENSMUST00000029674.8|Efna4|ENSMUSG00000028040.8|ephrin A4
mm39_v1_chr15_-_37792635_37792814	0.790515	UCACAGU	ENSMUST00000090150.11|Ncald|ENSMUSG00000051359.16|neurocalcin delta	ENSMUST00000150453.2|Ncald|ENSMUSG00000051359.16|neurocalcin delta
mm39_v1_chr13_-_55718899_55718939	0.788783	UCACAGU	ENSMUST00000225240.3|Fam193b|ENSMUSG00000021495.11|family with sequence similarity 193, member B	ENSMUST00000021957.8|Fam193b|ENSMUSG00000021495.11|family with sequence similarity 193, member B
mm39_v1_chr2_-_130480014_130480033	0.787665	UCACAGU	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr2_+_32617671_32617727	0.786121	UCACAGU	ENSMUST00000113242.5|Sh2d3c|ENSMUSG00000059013.13|SH2 domain containing 3C
mm39_v1_chr9_-_107167046_107167076	0.784662	UCACAGU	ENSMUST00000035194.8|Mapkapk3|ENSMUSG00000032577.17|mitogen-activated protein kinase-activated protein kinase 3
mm39_v1_chr11_+_45946800_45946895	0.783487	UCACAGU	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr4_-_44167509_44167609	0.783013	UCACAGU	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr15_-_98505508_98505519	0.780904	UCACAGU	ENSMUST00000096224.6|Adcy6|ENSMUSG00000022994.10|adenylate cyclase 6
mm39_v1_chr3_+_131791042_131791060	0.774575	UCACAGU	ENSMUST00000029665.7|Dkk2|ENSMUSG00000028031.7|dickkopf WNT signaling pathway inhibitor 2
mm39_v1_chr18_-_55123153_55123238	0.765162	UCACAGU	ENSMUST00000064763.7|Zfp608|ENSMUSG00000052713.10|zinc finger protein 608
mm39_v1_chr7_-_83533497_83533523	0.755725	UCACAGU	ENSMUST00000094216.5|Tlnrd1|ENSMUSG00000070462.5|talin rod domain containing 1
mm39_v1_chr1_-_69724939_69724987	0.75491	UCACAGU	ENSMUST00000027146.9|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr8_+_84379298_84379341	0.754616	UCACAGU	ENSMUST00000019577.10|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1	ENSMUST00000211985.2|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1	ENSMUST00000212463.2|Gipc1|ENSMUSG00000019433.10|GIPC PDZ domain containing family, member 1
mm39_v1_chr1_-_162567919_162568103	0.750098	UCACAGU	ENSMUST00000182331.2|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000183011.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182593.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182149.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C
mm39_v1_chr17_-_43187280_43187368	0.743124	UCACAGU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr14_-_30348153_30348174	0.737681	UCACAGU	ENSMUST00000112211.9|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta	ENSMUST00000112210.11|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta
mm39_v1_chrX_-_47543029_47543071	0.734206	UCACAGU	ENSMUST00000114958.8|Elf4|ENSMUSG00000031103.13|E74-like factor 4 (ets domain transcription factor)
mm39_v1_chr8_-_27664651_27664680	0.731527	UCACAGU	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chr12_+_70872266_70872288	0.714397	UCACAGU	ENSMUST00000057859.9|Frmd6|ENSMUSG00000048285.10|FERM domain containing 6
mm39_v1_chr7_-_28079678_28079710	0.712036	UCACAGU	ENSMUST00000051241.7|Zfp36|ENSMUSG00000044786.7|zinc finger protein 36
mm39_v1_chr13_+_30933209_30933290	0.701882	UCACAGU	ENSMUST00000021784.10|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000110307.3|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000222125.2|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4
mm39_v1_chr4_+_33310306_33310374	0.700526	UCACAGU	ENSMUST00000108153.9|Rngtt|ENSMUSG00000028274.18|RNA guanylyltransferase and 5'-phosphatase	ENSMUST00000029942.8|Rngtt|ENSMUSG00000028274.18|RNA guanylyltransferase and 5'-phosphatase
mm39_v1_chr11_+_62139782_62139865	0.699689	UCACAGU	ENSMUST00000018644.3|Adora2b|ENSMUSG00000018500.3|adenosine A2b receptor
mm39_v1_chr13_-_59823568_59823628	0.688765	UCACAGU	ENSMUST00000095739.10|Golm1|ENSMUSG00000021556.13|golgi membrane protein 1	ENSMUST00000022039.7|Golm1|ENSMUSG00000021556.13|golgi membrane protein 1
mm39_v1_chr11_-_53371050_53371101	0.686753	UCACAGU	ENSMUST00000104955.4|Sowaha|ENSMUSG00000044352.7|sosondowah ankyrin repeat domain family member A
mm39_v1_chr11_+_105858764_105858782	0.68635	UCACAGU	ENSMUST00000001963.14|Ace|ENSMUSG00000020681.15|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm39_v1_chr16_-_76170714_76170741	0.680855	UCACAGU	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr17_+_5045178_5045349	0.679927	UCACAGU	ENSMUST00000092723.11|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)	ENSMUST00000232180.2|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)	ENSMUST00000115797.9|Arid1b|ENSMUSG00000069729.15|AT rich interactive domain 1B (SWI-like)
mm39_v1_chr9_+_13573756_13573899	0.672994	UCACAGU	ENSMUST00000177755.3|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr11_-_103158190_103158298	0.662298	UCACAGU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr10_-_37014859_37014933	0.660508	UCACAGU	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr2_-_115896279_115896334	0.656725	UCACAGU	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr4_+_114945905_114945966	0.653618	UCACAGU	ENSMUST00000171877.8|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000177647.8|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000106548.9|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1	ENSMUST00000030488.3|Pdzk1ip1|ENSMUSG00000028716.16|PDZK1 interacting protein 1
mm39_v1_chr3_-_129126362_129126375	0.647315	UCACAGU	ENSMUST00000029658.14|Enpep|ENSMUSG00000028024.15|glutamyl aminopeptidase
mm39_v1_chr1_+_60785517_60785586	0.645725	UCACAGU	ENSMUST00000027165.3|Cd28|ENSMUSG00000026012.3|CD28 antigen
mm39_v1_chr15_+_102917977_102918011	0.642674	UCACAGU	ENSMUST00000001711.6|Hoxc6|ENSMUSG00000001661.6|homeobox C6
mm39_v1_chr3_-_9675130_9675146	0.639998	UCACAGU	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr6_+_34686373_34686381	0.637189	UCACAGU	ENSMUST00000115021.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr17_+_36132567_36132586	0.63713	UCACAGU	ENSMUST00000003635.7|Ier3|ENSMUSG00000003541.7|immediate early response 3
mm39_v1_chr6_+_115337899_115337925	0.634483	UCACAGU	ENSMUST00000171644.8|Pparg|ENSMUSG00000000440.13|peroxisome proliferator activated receptor gamma
mm39_v1_chr2_+_29692638_29692660	0.633517	UCACAGU	ENSMUST00000080065.3|Slc27a4|ENSMUSG00000059316.3|solute carrier family 27 (fatty acid transporter), member 4
mm39_v1_chr7_-_16657825_16658039	0.633517	UCACAGU	ENSMUST00000019514.10|Calm3|ENSMUSG00000019370.11|calmodulin 3
mm39_v1_chr4_+_119671688_119671723	0.63212	UCACAGU	ENSMUST00000106307.9|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chr8_+_66070661_66070743	0.621836	UCACAGU	ENSMUST00000110258.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110256.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110255.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr9_-_95288775_95288775	0.619525	UCACAGU	ENSMUST00000036267.8|Chst2|ENSMUSG00000033350.8|carbohydrate sulfotransferase 2
mm39_v1_chr14_+_76192449_76192456	0.61882	UCACAGU	ENSMUST00000050120.4|Kctd4|ENSMUSG00000046523.6|potassium channel tetramerisation domain containing 4
mm39_v1_chr5_-_140634773_140634807	0.612468	UCACAGU	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr10_+_7556948_7556990	0.612336	UCACAGU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr16_-_21814190_21814222	0.611473	UCACAGU	ENSMUST00000231766.2|Liph|ENSMUSG00000044626.14|lipase, member H	ENSMUST00000074230.12|Liph|ENSMUSG00000044626.14|lipase, member H
mm39_v1_chr1_+_155034452_155034522	0.604716	UCACAGU	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr19_+_3901797_3901840	0.60208	UCACAGU	ENSMUST00000072055.13|Chka|ENSMUSG00000024843.16|choline kinase alpha
mm39_v1_chr1_-_171854818_171854880	0.6001	UCACAGU	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr15_-_58078274_58078328	0.595411	UCACAGU	ENSMUST00000022986.8|Fbxo32|ENSMUSG00000022358.8|F-box protein 32
mm39_v1_chr11_-_46057224_46057335	0.590137	UCACAGU	ENSMUST00000020679.3|Nipal4|ENSMUSG00000020411.3|NIPA-like domain containing 4
mm39_v1_chr19_+_53128861_53128880	0.58677	UCACAGU	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr18_-_52662917_52662989	0.573562	UCACAGU	ENSMUST00000171470.8|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chrX_-_11946785_11946800	0.5727	UCACAGU	ENSMUST00000115513.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000115512.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000065143.14|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000124033.8|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor
mm39_v1_chr15_-_60696790_60696929	0.563249	UCACAGU	ENSMUST00000100635.5|Lratd2|ENSMUSG00000072568.5|LRAT domain containing 1
mm39_v1_chr5_+_36050663_36050817	0.555692	UCACAGU	ENSMUST00000064571.11|Afap1|ENSMUSG00000029094.13|actin filament associated protein 1
mm39_v1_chr3_-_87081939_87082054	0.553524	UCACAGU	ENSMUST00000159976.8|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1	ENSMUST00000107618.9|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1
mm39_v1_chr5_+_64960705_64960731	0.553223	UCACAGU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr1_+_51328265_51328301	0.550865	UCACAGU	ENSMUST00000051572.8|Cavin2|ENSMUSG00000045954.8|caveolae associated 2
mm39_v1_chr16_+_33504829_33504842	0.550519	UCACAGU	ENSMUST00000152782.8|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chrX_-_56384089_56384140	0.548357	UCACAGU	ENSMUST00000033468.11|Arhgef6|ENSMUSG00000031133.13|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm39_v1_chr3_+_151916059_151916102	0.546879	UCACAGU	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr6_+_119456629_119456768	0.545912	UCACAGU	ENSMUST00000032094.7|Fbxl14|ENSMUSG00000030019.7|F-box and leucine-rich repeat protein 14
mm39_v1_chr10_-_30531768_30531807	0.541169	UCACAGU	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chrX_-_20157966_20158078	0.538873	UCACAGU	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr12_-_87435091_87435129	0.535846	UCACAGU	ENSMUST00000021424.5|Sptlc2|ENSMUSG00000021036.11|serine palmitoyltransferase, long chain base subunit 2
mm39_v1_chr15_-_63932288_63932327	0.532684	UCACAGU	ENSMUST00000063838.11|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B	ENSMUST00000228908.2|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B
mm39_v1_chr5_-_73413888_73413979	0.528484	UCACAGU	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr1_+_191553556_191553602	0.523066	UCACAGU	ENSMUST00000027931.8|Nek2|ENSMUSG00000026622.16|NIMA (never in mitosis gene a)-related expressed kinase 2
mm39_v1_chr18_+_76374651_76374804	0.521694	UCACAGU	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr11_-_79037213_79037236	0.520713	UCACAGU	ENSMUST00000018478.11|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1	ENSMUST00000108264.8|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1
mm39_v1_chr9_+_72569628_72569697	0.51963	UCACAGU	ENSMUST00000034740.15|Nedd4|ENSMUSG00000032216.16|neural precursor cell expressed, developmentally down-regulated 4
mm39_v1_chr3_+_126390600_126390688	0.512152	UCACAGU	ENSMUST00000106402.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000106399.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000066466.13|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000163226.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta	ENSMUST00000199300.5|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr4_+_59189239_59189257	0.51005	UCACAGU	ENSMUST00000030074.8|Ugcg|ENSMUSG00000028381.9|UDP-glucose ceramide glucosyltransferase
mm39_v1_chr3_+_109247938_109247976	0.509711	UCACAGU	ENSMUST00000046864.14|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chr3_-_116506294_116506302	0.507282	UCACAGU	ENSMUST00000029569.9|Slc35a3|ENSMUSG00000027957.14|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm39_v1_chr13_-_100240570_100240602	0.506834	UCACAGU	ENSMUST00000038104.12|Bdp1|ENSMUSG00000049658.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm39_v1_chr5_+_76736514_76736570	0.505632	UCACAGU	ENSMUST00000121979.8|Cep135|ENSMUSG00000036403.16|centrosomal protein 135
mm39_v1_chr10_-_20600797_20600824	0.504418	UCACAGU	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr11_+_87938519_87938554	0.504265	UCACAGU	ENSMUST00000079866.11|Srsf1|ENSMUSG00000018379.18|serine and arginine-rich splicing factor 1
mm39_v1_chr2_+_14609063_14609117	0.50416	UCACAGU	ENSMUST00000114723.9|Cacnb2|ENSMUSG00000057914.16|calcium channel, voltage-dependent, beta 2 subunit
mm39_v1_chr4_+_21848039_21848077	0.501296	UCACAGU	ENSMUST00000098238.9|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich	ENSMUST00000108229.2|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich
mm39_v1_chr8_-_123425805_123425859	0.498161	UCACAGU	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr4_+_33924632_33924651	0.494126	UCACAGU	ENSMUST00000057188.7|Cnr1|ENSMUSG00000044288.7|cannabinoid receptor 1 (brain)
mm39_v1_chr6_-_142910094_142910178	0.491533	UCACAGU	ENSMUST00000032421.4|St8sia1|ENSMUSG00000030283.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm39_v1_chr15_+_81820954_81821038	0.488468	UCACAGU	ENSMUST00000038757.8|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding	ENSMUST00000230633.2|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding
mm39_v1_chr14_-_101846459_101846511	0.486792	UCACAGU	ENSMUST00000161991.8|Tbc1d4|ENSMUSG00000033083.17|TBC1 domain family, member 4
mm39_v1_chr2_-_59955995_59956119	0.485984	UCACAGU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr10_+_69369590_69369603	0.482815	UCACAGU	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr18_+_61058684_61058712	0.478586	UCACAGU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr9_+_3532778_3532778	0.47437	UCACAGU	ENSMUST00000115733.3|Gucy1a2|ENSMUSG00000041624.11|guanylate cyclase 1, soluble, alpha 2
mm39_v1_chr3_+_114697710_114697747	0.47129	UCACAGU	ENSMUST00000081752.13|Olfm3|ENSMUSG00000027965.16|olfactomedin 3
mm39_v1_chr1_+_85721132_85721262	0.470584	UCACAGU	ENSMUST00000113360.8|Cab39|ENSMUSG00000036707.17|calcium binding protein 39	ENSMUST00000126962.3|Cab39|ENSMUSG00000036707.17|calcium binding protein 39
mm39_v1_chr2_+_60040231_60040288	0.470362	UCACAGU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr4_+_12089373_12089441	0.470075	UCACAGU	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr6_-_72935468_72935479	0.46589	UCACAGU	ENSMUST00000114050.8|Tmsb10|ENSMUSG00000079523.9|thymosin, beta 10
mm39_v1_chr11_-_115918784_115918826	0.462797	UCACAGU	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chr9_+_7272514_7272537	0.459586	UCACAGU	ENSMUST00000015394.10|Mmp13|ENSMUSG00000050578.11|matrix metallopeptidase 13
mm39_v1_chr11_+_72938609_72938728	0.457797	UCACAGU	ENSMUST00000021135.5|Ncbp3|ENSMUSG00000020783.15|nuclear cap binding subunit 3
mm39_v1_chr2_+_173918715_173918859	0.457432	UCACAGU	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr4_+_54947976_54948054	0.455894	UCACAGU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr5_-_21156766_21156824	0.455441	UCACAGU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr2_-_51039112_51039127	0.454764	UCACAGU	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr9_-_114762986_114763067	0.454328	UCACAGU	ENSMUST00000146623.8|Gpd1l|ENSMUSG00000050627.14|glycerol-3-phosphate dehydrogenase 1-like
mm39_v1_chr8_-_78451055_78451113	0.454097	UCACAGU	ENSMUST00000034029.8|Ednra|ENSMUSG00000031616.8|endothelin receptor type A
mm39_v1_chr7_+_112806672_112806803	0.453174	UCACAGU	ENSMUST00000047321.9|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210074.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210238.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like
mm39_v1_chr2_+_32425327_32425371	0.448441	UCACAGU	ENSMUST00000133512.2|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A	ENSMUST00000048375.6|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A
mm39_v1_chr2_+_25070749_25070776	0.448349	UCACAGU	ENSMUST00000104999.4|Nrarp|ENSMUSG00000078202.4|Notch-regulated ankyrin repeat protein
mm39_v1_chr7_-_19556612_19556712	0.445385	UCACAGU	ENSMUST00000120537.8|Bcl3|ENSMUSG00000053175.18|B cell leukemia/lymphoma 3
mm39_v1_chr7_-_19043955_19043976	0.444442	UCACAGU	ENSMUST00000207334.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B	ENSMUST00000208505.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B	ENSMUST00000207716.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B	ENSMUST00000208326.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B	ENSMUST00000003640.4|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B
mm39_v1_chr14_-_65499835_65499941	0.443134	UCACAGU	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr2_+_119156265_119156298	0.440336	UCACAGU	ENSMUST00000102517.4|Dll4|ENSMUSG00000027314.7|delta like canonical Notch ligand 4
mm39_v1_chr5_-_33011530_33011600	0.436107	UCACAGU	ENSMUST00000130134.3|Prr14l|ENSMUSG00000054280.15|proline rich 14-like	ENSMUST00000120129.9|Prr14l|ENSMUSG00000054280.15|proline rich 14-like
mm39_v1_chr6_+_87019819_87019900	0.434778	UCACAGU	ENSMUST00000113657.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113658.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113655.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000032057.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1
mm39_v1_chr2_-_45003270_45003296	0.433612	UCACAGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_+_60872167_60872226	0.43351	UCACAGU	ENSMUST00000022566.14|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13	ENSMUST00000159729.2|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13
mm39_v1_chr13_-_116446166_116446235	0.430117	UCACAGU	ENSMUST00000036060.13|Isl1|ENSMUSG00000042258.14|ISL1 transcription factor, LIM/homeodomain
mm39_v1_chr6_-_52211882_52211940	0.429349	UCACAGU	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr12_-_80159768_80159793	0.426613	UCACAGU	ENSMUST00000219642.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000165114.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000218835.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000021552.3|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1
mm39_v1_chr5_+_135052336_135052363	0.426613	UCACAGU	ENSMUST00000005509.11|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)	ENSMUST00000201008.4|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)
mm39_v1_chr12_+_69418886_69418946	0.426575	UCACAGU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr3_+_32490300_32490300	0.426462	UCACAGU	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr17_-_84495364_84495381	0.425763	UCACAGU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr11_+_98754434_98754472	0.42393	UCACAGU	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr18_-_36648850_36648866	0.423917	UCACAGU	ENSMUST00000025363.7|Hbegf|ENSMUSG00000024486.7|heparin-binding EGF-like growth factor
mm39_v1_chr18_+_32296126_32296249	0.420915	UCACAGU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr7_-_26928029_26928061	0.420546	UCACAGU	ENSMUST00000003850.8|Itpkc|ENSMUSG00000003752.10|inositol 1,4,5-trisphosphate 3-kinase C
mm39_v1_chr19_+_3817396_3817523	0.418327	UCACAGU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr11_-_115590318_115590360	0.418312	UCACAGU	ENSMUST00000106497.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr5_-_108134869_108134951	0.416882	UCACAGU	ENSMUST00000145239.2|Dipk1a|ENSMUSG00000029270.11|divergent protein kinase domain 1A	ENSMUST00000031198.11|Dipk1a|ENSMUSG00000029270.11|divergent protein kinase domain 1A
mm39_v1_chr1_+_132405099_132405229	0.412557	UCACAGU	ENSMUST00000190825.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000190997.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000187505.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000027700.15|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000188575.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit
mm39_v1_chr6_+_54658609_54658770	0.411969	UCACAGU	ENSMUST00000190641.7|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)	ENSMUST00000187701.2|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)
mm39_v1_chr10_-_70995485_70995537	0.411707	UCACAGU	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr2_+_69553141_69553189	0.410561	UCACAGU	ENSMUST00000090858.10|Ppig|ENSMUSG00000042133.17|peptidyl-prolyl isomerase G (cyclophilin G)
mm39_v1_chr2_-_163486998_163487064	0.410347	UCACAGU	ENSMUST00000017851.4|Serinc3|ENSMUSG00000017707.10|serine incorporator 3
mm39_v1_chr17_+_50816296_50816431	0.408651	UCACAGU	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr1_+_60219724_60219797	0.408552	UCACAGU	ENSMUST00000160834.8|Nbeal1|ENSMUSG00000073664.12|neurobeachin like 1
mm39_v1_chr9_-_97915227_97915234	0.40631	UCACAGU	ENSMUST00000035027.13|Clstn2|ENSMUSG00000032452.13|calsyntenin 2
mm39_v1_chr17_+_84819260_84819342	0.405815	UCACAGU	ENSMUST00000047206.7|Plekhh2|ENSMUSG00000040852.7|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
mm39_v1_chr18_-_34757653_34757655	0.405588	UCACAGU	ENSMUST00000003876.10|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000115766.8|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000097626.10|Brd8|ENSMUSG00000003778.15|bromodomain containing 8	ENSMUST00000115765.2|Brd8|ENSMUSG00000003778.15|bromodomain containing 8
mm39_v1_chr17_+_25407352_25407392	0.397043	UCACAGU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr14_-_73286504_73286517	0.396624	UCACAGU	ENSMUST00000044664.12|Cysltr2|ENSMUSG00000033470.13|cysteinyl leukotriene receptor 2
mm39_v1_chr3_+_52175757_52175827	0.396262	UCACAGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr7_-_126391657_126391711	0.395175	UCACAGU	ENSMUST00000032936.8|Ppp4c|ENSMUSG00000030697.8|protein phosphatase 4, catalytic subunit
mm39_v1_chr10_+_11025150_11025174	0.394483	UCACAGU	ENSMUST00000044053.13|Shprh|ENSMUSG00000090112.9|SNF2 histone linker PHD RING helicase
mm39_v1_chr10_+_7708178_7708255	0.393916	UCACAGU	ENSMUST00000039484.6|Zc3h12d|ENSMUSG00000039981.7|zinc finger CCCH type containing 12D
mm39_v1_chr17_+_17594526_17594571	0.393535	UCACAGU	ENSMUST00000024620.8|Riok2|ENSMUSG00000116564.2|RIO kinase 2
mm39_v1_chr11_-_98040377_98040446	0.387247	UCACAGU	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr8_-_87611849_87611935	0.386411	UCACAGU	ENSMUST00000034074.8|N4bp1|ENSMUSG00000031652.12|NEDD4 binding protein 1
mm39_v1_chr4_+_42916666_42916713	0.385723	UCACAGU	ENSMUST00000132173.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24	ENSMUST00000107975.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24
mm39_v1_chr1_+_19279138_19279176	0.383199	UCACAGU	ENSMUST00000027059.11|Tfap2b|ENSMUSG00000025927.14|transcription factor AP-2 beta
mm39_v1_chr10_+_96452860_96452877	0.382399	UCACAGU	ENSMUST00000038377.9|Btg1|ENSMUSG00000036478.9|BTG anti-proliferation factor 1
mm39_v1_chr7_+_122723365_122723446	0.381519	UCACAGU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr18_+_44513547_44513644	0.377653	UCACAGU	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr3_+_89427458_89427481	0.377045	UCACAGU	ENSMUST00000000811.8|Kcnn3|ENSMUSG00000000794.10|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm39_v1_chr14_-_14466825_14466883	0.37687	UCACAGU	ENSMUST00000225234.2|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6	ENSMUST00000166497.9|Abhd6|ENSMUSG00000025277.15|abhydrolase domain containing 6
mm39_v1_chr6_-_83418656_83418666	0.370586	UCACAGU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr6_-_72593983_72593983	0.367846	UCACAGU	ENSMUST00000070524.5|Tgoln1|ENSMUSG00000056429.5|trans-golgi network protein
mm39_v1_chr11_+_69792642_69792720	0.364526	UCACAGU	ENSMUST00000177138.8|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000108617.10|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000177476.8|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4	ENSMUST00000061837.11|Neurl4|ENSMUSG00000047284.15|neuralized E3 ubiquitin protein ligase 4
mm39_v1_chr7_-_109351399_109351497	0.363024	UCACAGU	ENSMUST00000128043.2|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B	ENSMUST00000033333.13|Tmem9b|ENSMUSG00000031021.14|TMEM9 domain family, member B
mm39_v1_chrX_+_41156713_41156751	0.354889	UCACAGU	ENSMUST00000115094.8|Xiap|ENSMUSG00000025860.16|X-linked inhibitor of apoptosis
mm39_v1_chr2_-_120801186_120801242	0.354838	UCACAGU	ENSMUST00000028728.6|Ubr1|ENSMUSG00000027272.6|ubiquitin protein ligase E3 component n-recognin 1
mm39_v1_chr2_+_163836880_163836880	0.352621	UCACAGU	ENSMUST00000018470.10|Ywhab|ENSMUSG00000018326.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm39_v1_chr5_+_129578285_129578317	0.351429	UCACAGU	ENSMUST00000053737.9|Sfswap|ENSMUSG00000029439.15|splicing factor SWAP
mm39_v1_chr2_+_136555364_136555412	0.351298	UCACAGU	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr5_-_134717443_134717491	0.350888	UCACAGU	ENSMUST00000015137.10|Limk1|ENSMUSG00000029674.14|LIM-domain containing, protein kinase
mm39_v1_chr16_-_58343789_58343883	0.34671	UCACAGU	ENSMUST00000137035.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6	ENSMUST00000149456.8|St3gal6|ENSMUSG00000022747.18|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
mm39_v1_chr2_-_153083322_153083346	0.346403	UCACAGU	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr7_+_99876515_99876606	0.345291	UCACAGU	ENSMUST00000084935.11|Pgm2l1|ENSMUSG00000030729.18|phosphoglucomutase 2-like 1
mm39_v1_chr4_+_109264284_109264364	0.342244	UCACAGU	ENSMUST00000064129.14|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A	ENSMUST00000106619.8|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A
mm39_v1_chr3_+_37694094_37694229	0.339662	UCACAGU	ENSMUST00000108109.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000038569.8|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1	ENSMUST00000108107.2|Spry1|ENSMUSG00000037211.13|sprouty RTK signaling antagonist 1
mm39_v1_chr6_+_142332941_142333017	0.339253	UCACAGU	ENSMUST00000032372.7|Golt1b|ENSMUSG00000030245.11|golgi transport 1B
mm39_v1_chr4_+_17853452_17853474	0.337136	UCACAGU	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr4_-_45084564_45084610	0.336442	UCACAGU	ENSMUST00000052236.13|Fbxo10|ENSMUSG00000048232.13|F-box protein 10
mm39_v1_chr2_+_68691778_68691854	0.334946	UCACAGU	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr2_+_156262756_156262837	0.332731	UCACAGU	ENSMUST00000103137.10|Epb41l1|ENSMUSG00000027624.21|erythrocyte membrane protein band 4.1 like 1
mm39_v1_chr13_-_113755082_113755101	0.330405	UCACAGU	ENSMUST00000109241.5|Snx18|ENSMUSG00000042364.12|sorting nexin 18
mm39_v1_chr3_+_137570334_137570374	0.330314	UCACAGU	ENSMUST00000174561.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1	ENSMUST00000173790.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1
mm39_v1_chr6_-_115971914_115971971	0.329757	UCACAGU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chr15_+_58287305_58287361	0.326093	UCACAGU	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr7_-_131012202_131012250	0.32577	UCACAGU	ENSMUST00000207243.2|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000128432.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000121033.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000046306.15|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr1_+_82817170_82817239	0.324616	UCACAGU	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr7_-_35453818_35453879	0.322982	UCACAGU	ENSMUST00000051377.15|Dpy19l3|ENSMUSG00000043671.15|dpy-19-like 3 (C. elegans)
mm39_v1_chr3_-_153430741_153430816	0.320925	UCACAGU	ENSMUST00000064460.7|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ENSMUST00000200397.5|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr14_+_47514368_47514406	0.31805	UCACAGU	ENSMUST00000065562.6|Socs4|ENSMUSG00000048379.10|suppressor of cytokine signaling 4
mm39_v1_chr1_-_136888118_136888234	0.317588	UCACAGU	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr13_+_74157538_74157572	0.316668	UCACAGU	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr2_-_75534985_75535023	0.316431	UCACAGU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr12_+_95658987_95659011	0.312719	UCACAGU	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr5_-_114131934_114131964	0.310238	UCACAGU	ENSMUST00000159592.8|Ssh1|ENSMUSG00000042121.17|slingshot protein phosphatase 1
mm39_v1_chr7_+_30121147_30121167	0.309133	UCACAGU	ENSMUST00000108176.9|Nfkbid|ENSMUSG00000036931.16|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta
mm39_v1_chr12_-_91556761_91556783	0.308711	UCACAGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr11_-_120715351_120715406	0.307401	UCACAGU	ENSMUST00000055655.9|Fasn|ENSMUSG00000025153.10|fatty acid synthase
mm39_v1_chr10_+_39245746_39245808	0.304258	UCACAGU	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr4_+_99952988_99953064	0.303524	UCACAGU	ENSMUST00000039630.6|Ror1|ENSMUSG00000035305.6|receptor tyrosine kinase-like orphan receptor 1
mm39_v1_chr8_-_92039850_92039905	0.303419	UCACAGU	ENSMUST00000047783.14|Rpgrip1l|ENSMUSG00000033282.15|Rpgrip1-like
mm39_v1_chrX_+_71006577_71006619	0.301974	UCACAGU	ENSMUST00000048790.7|Prrg3|ENSMUSG00000033361.14|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm39_v1_chr1_-_184731672_184731767	0.301206	UCACAGU	ENSMUST00000192657.2|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1	ENSMUST00000027929.10|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1
mm39_v1_chr11_-_85125889_85125963	0.296357	UCACAGU	ENSMUST00000018625.10|Appbp2|ENSMUSG00000018481.10|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm39_v1_chr17_+_57297280_57297350	0.293092	UCACAGU	ENSMUST00000002735.9|Clpp|ENSMUSG00000002660.9|caseinolytic mitochondrial matrix peptidase proteolytic subunit
mm39_v1_chr10_+_88215079_88215164	0.290172	UCACAGU	ENSMUST00000130301.8|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	ENSMUST00000020251.10|Gnptab|ENSMUSG00000035311.17|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm39_v1_chr10_-_53951825_53951892	0.289389	UCACAGU	ENSMUST00000003843.16|Man1a|ENSMUSG00000003746.17|mannosidase 1, alpha
mm39_v1_chr9_+_94551929_94551984	0.28884	UCACAGU	ENSMUST00000033463.10|Slc9a9|ENSMUSG00000031129.10|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm39_v1_chr8_+_54530530_54530641	0.288435	UCACAGU	ENSMUST00000033919.6|Vegfc|ENSMUSG00000031520.7|vascular endothelial growth factor C
mm39_v1_chr11_-_100418717_100418826	0.287975	UCACAGU	ENSMUST00000107389.8|Acly|ENSMUSG00000020917.18|ATP citrate lyase	ENSMUST00000007131.16|Acly|ENSMUSG00000020917.18|ATP citrate lyase
mm39_v1_chrX_-_100266032_100266169	0.286766	UCACAGU	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr6_+_91661034_91661058	0.285233	UCACAGU	ENSMUST00000032185.9|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr6_+_7844759_7844859	0.283664	UCACAGU	ENSMUST00000040159.6|C1galt1|ENSMUSG00000042460.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm39_v1_chr1_+_61017057_61017096	0.281608	UCACAGU	ENSMUST00000027162.12|Icos|ENSMUSG00000026009.15|inducible T cell co-stimulator	ENSMUST00000102827.4|Icos|ENSMUSG00000026009.15|inducible T cell co-stimulator
mm39_v1_chr11_+_23206001_23206105	0.280694	UCACAGU	ENSMUST00000020538.13|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000109551.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102870.8|Xpo1|ENSMUSG00000020290.15|exportin 1	ENSMUST00000102869.8|Xpo1|ENSMUSG00000020290.15|exportin 1
mm39_v1_chr4_+_116078830_116078872	0.278443	UCACAGU	ENSMUST00000030464.14|Pik3r3|ENSMUSG00000028698.14|phosphoinositide-3-kinase regulatory subunit 3
mm39_v1_chr2_-_68302612_68302660	0.277197	UCACAGU	ENSMUST00000102715.4|Stk39|ENSMUSG00000027030.16|serine/threonine kinase 39
mm39_v1_chrX_+_106192510_106192569	0.277131	UCACAGU	ENSMUST00000147521.8|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B	ENSMUST00000167673.2|P2ry10b|ENSMUSG00000054293.11|purinergic receptor P2Y, G-protein coupled 10B
mm39_v1_chr5_-_52628825_52628932	0.27667	UCACAGU	ENSMUST00000198008.5|Ccdc149|ENSMUSG00000045790.11|coiled-coil domain containing 149	ENSMUST00000059428.7|Ccdc149|ENSMUSG00000045790.11|coiled-coil domain containing 149
mm39_v1_chr6_+_88061464_88061509	0.276329	UCACAGU	ENSMUST00000032143.8|Rpn1|ENSMUSG00000030062.8|ribophorin I
mm39_v1_chr17_+_74111823_74111836	0.276299	UCACAGU	ENSMUST00000024860.9|Ehd3|ENSMUSG00000024065.9|EH-domain containing 3
mm39_v1_chr3_+_88624145_88624190	0.274506	UCACAGU	ENSMUST00000029692.15|Rit1|ENSMUSG00000028057.15|Ras-like without CAAX 1	ENSMUST00000171645.8|Rit1|ENSMUSG00000028057.15|Ras-like without CAAX 1
mm39_v1_chr11_-_68291638_68291662	0.272833	UCACAGU	ENSMUST00000108674.9|Ntn1|ENSMUSG00000020902.13|netrin 1
mm39_v1_chr18_-_34139972_34140042	0.270327	UCACAGU	ENSMUST00000025234.7|Epb41l4a|ENSMUSG00000024376.8|erythrocyte membrane protein band 4.1 like 4a
mm39_v1_chr6_+_113054314_113054343	0.264332	UCACAGU	ENSMUST00000042889.12|Setd5|ENSMUSG00000034269.13|SET domain containing 5
mm39_v1_chr5_-_5315968_5316292	0.263738	UCACAGU	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr5_+_97145533_97145625	0.260663	UCACAGU	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr11_+_53458188_53458353	0.260156	UCACAGU	ENSMUST00000057330.15|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000120613.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000173744.8|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A	ENSMUST00000118353.9|Kif3a|ENSMUSG00000018395.20|kinesin family member 3A
mm39_v1_chr17_-_22580381_22580381	0.259709	UCACAGU	ENSMUST00000115535.3|Zfp944|ENSMUSG00000033972.10|zinc finger protein 944
mm39_v1_chr7_-_80184746_80184870	0.259071	UCACAGU	ENSMUST00000170315.3|Blm|ENSMUSG00000030528.13|Bloom syndrome, RecQ like helicase	ENSMUST00000081314.11|Blm|ENSMUSG00000030528.13|Bloom syndrome, RecQ like helicase
mm39_v1_chrX_-_133062677_133062677	0.25558	UCACAGU	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chrX_+_100342749_100342808	0.255394	UCACAGU	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr14_+_47710005_47710082	0.251185	UCACAGU	ENSMUST00000043112.9|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000163324.8|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000228668.2|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000168833.9|Fbxo34|ENSMUSG00000037536.15|F-box protein 34
mm39_v1_chr10_-_84369831_84369926	0.249149	UCACAGU	ENSMUST00000167671.2|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4	ENSMUST00000053871.5|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4
mm39_v1_chr2_-_58247764_58247907	0.249128	UCACAGU	ENSMUST00000112608.9|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000112607.3|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000028178.14|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC
mm39_v1_chr8_+_36054919_36054981	0.247165	UCACAGU	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr12_-_14202041_14202070	0.24351	UCACAGU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr4_+_12140263_12140317	0.243482	UCACAGU	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chr19_-_59932079_59932110	0.242082	UCACAGU	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr2_-_160950936_160950950	0.241183	UCACAGU	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr9_+_58536386_58536393	0.238415	UCACAGU	ENSMUST00000176250.2|Nptn|ENSMUSG00000032336.18|neuroplastin
mm39_v1_chr5_-_25703700_25703841	0.237538	UCACAGU	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chrX_-_110606766_110606834	0.23658	UCACAGU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr17_-_32074754_32074780	0.236515	UCACAGU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr3_+_36917251_36917296	0.236051	UCACAGU	ENSMUST00000057272.15|4932438A13Rik|ENSMUSG00000037270.19|RIKEN cDNA 4932438A13 gene
mm39_v1_chr4_-_132611820_132611835	0.235622	UCACAGU	ENSMUST00000030698.5|Stx12|ENSMUSG00000028879.5|syntaxin 12
mm39_v1_chr11_-_3454766_3454834	0.235211	UCACAGU	ENSMUST00000044507.12|Inpp5j|ENSMUSG00000034570.13|inositol polyphosphate 5-phosphatase J
mm39_v1_chr16_-_92622972_92623037	0.235046	UCACAGU	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr11_-_113456568_113456618	0.234876	UCACAGU	ENSMUST00000071539.10|Slc39a11|ENSMUSG00000041654.16|solute carrier family 39 (metal ion transporter), member 11	ENSMUST00000106633.10|Slc39a11|ENSMUSG00000041654.16|solute carrier family 39 (metal ion transporter), member 11	ENSMUST00000042657.16|Slc39a11|ENSMUSG00000041654.16|solute carrier family 39 (metal ion transporter), member 11	ENSMUST00000149034.8|Slc39a11|ENSMUSG00000041654.16|solute carrier family 39 (metal ion transporter), member 11
mm39_v1_chr8_-_96534085_96534099	0.234263	UCACAGU	ENSMUST00000098473.11|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1	ENSMUST00000211887.2|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1
mm39_v1_chr5_+_150597204_150597269	0.233944	UCACAGU	ENSMUST00000202170.4|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B	ENSMUST00000016569.11|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B
mm39_v1_chr1_-_158785937_158785937	0.233925	UCACAGU	ENSMUST00000159861.9|Pappa2|ENSMUSG00000073530.12|pappalysin 2
mm39_v1_chr3_-_102111892_102112009	0.233851	UCACAGU	ENSMUST00000029453.13|Vangl1|ENSMUSG00000027860.16|VANGL planar cell polarity 1
mm39_v1_chr12_+_24881582_24881657	0.231483	UCACAGU	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr15_-_13173736_13173791	0.226371	UCACAGU	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr2_-_124965537_124965581	0.22483	UCACAGU	ENSMUST00000142718.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000152367.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000067780.10|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor	ENSMUST00000147105.8|Myef2|ENSMUSG00000027201.17|myelin basic protein expression factor 2, repressor
mm39_v1_chr7_+_121888520_121888563	0.223991	UCACAGU	ENSMUST00000064989.12|Prkcb|ENSMUSG00000052889.12|protein kinase C, beta	ENSMUST00000064921.5|Prkcb|ENSMUSG00000052889.12|protein kinase C, beta
mm39_v1_chr6_-_145195903_145195988	0.221226	UCACAGU	ENSMUST00000111710.8|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000155145.2|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000032399.12|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000203147.3|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog
mm39_v1_chr18_+_63110899_63110910	0.220941	UCACAGU	ENSMUST00000025474.14|Napg|ENSMUSG00000024581.14|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm39_v1_chr9_+_65816206_65816302	0.220463	UCACAGU	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr15_+_12824901_12824919	0.219746	UCACAGU	ENSMUST00000169061.8|Drosha|ENSMUSG00000022191.17|drosha, ribonuclease type III
mm39_v1_chr9_-_104140099_104140149	0.217865	UCACAGU	ENSMUST00000035170.13|Dnajc13|ENSMUSG00000032560.15|DnaJ heat shock protein family (Hsp40) member C13
mm39_v1_chr3_-_104771716_104771821	0.217181	UCACAGU	ENSMUST00000195912.2|Capza1|ENSMUSG00000070372.12|capping protein (actin filament) muscle Z-line, alpha 1	ENSMUST00000094028.10|Capza1|ENSMUSG00000070372.12|capping protein (actin filament) muscle Z-line, alpha 1
mm39_v1_chr4_+_21776261_21776297	0.215985	UCACAGU	ENSMUST00000065111.15|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000040429.12|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000148304.8|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45
mm39_v1_chrX_-_105055486_105055512	0.215931	UCACAGU	ENSMUST00000238718.2|Magt1|ENSMUSG00000031232.18|magnesium transporter 1	ENSMUST00000033583.14|Magt1|ENSMUSG00000031232.18|magnesium transporter 1	ENSMUST00000151689.9|Magt1|ENSMUSG00000031232.18|magnesium transporter 1
mm39_v1_chr1_+_52669849_52669916	0.215109	UCACAGU	ENSMUST00000165859.8|Nemp2|ENSMUSG00000043015.16|nuclear envelope integral membrane protein 2
mm39_v1_chr13_-_8921732_8921945	0.213235	UCACAGU	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr5_+_3593811_3593853	0.212168	UCACAGU	ENSMUST00000197082.5|Fam133b|ENSMUSG00000058503.12|family with sequence similarity 133, member B	ENSMUST00000115527.8|Fam133b|ENSMUSG00000058503.12|family with sequence similarity 133, member B
mm39_v1_chr6_+_92068361_92068371	0.208677	UCACAGU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr3_-_104127676_104127695	0.207574	UCACAGU	ENSMUST00000064371.14|Magi3|ENSMUSG00000052539.16|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm39_v1_chr13_+_48414582_48414704	0.205422	UCACAGU	ENSMUST00000021810.3|Id4|ENSMUSG00000021379.3|inhibitor of DNA binding 4
mm39_v1_chr15_+_6737853_6737883	0.200868	UCACAGU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr8_+_79235946_79236030	0.200455	UCACAGU	ENSMUST00000209490.2|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	ENSMUST00000034111.10|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm39_v1_chr8_+_85141975_85142030	0.199899	UCACAGU	ENSMUST00000121390.8|Cacna1a|ENSMUSG00000034656.19|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	ENSMUST00000122053.2|Cacna1a|ENSMUSG00000034656.19|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm39_v1_chr10_+_126814542_126814618	0.198763	UCACAGU	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr6_-_100264439_100264461	0.197238	UCACAGU	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr6_-_39702381_39702413	0.19531	UCACAGU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr3_-_96812610_96812662	0.19485	UCACAGU	ENSMUST00000029738.14|Gpr89|ENSMUSG00000028096.14|G protein-coupled receptor 89
mm39_v1_chr8_+_121215155_121215229	0.19459	UCACAGU	ENSMUST00000034279.16|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr9_+_21634779_21634911	0.194392	UCACAGU	ENSMUST00000034713.9|Ldlr|ENSMUSG00000032193.10|low density lipoprotein receptor
mm39_v1_chr7_-_73191484_73191503	0.194154	UCACAGU	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr9_+_83430363_83430393	0.193032	UCACAGU	ENSMUST00000188241.7|Sh3bgrl2|ENSMUSG00000032261.17|SH3 domain binding glutamic acid-rich protein like 2	ENSMUST00000113215.10|Sh3bgrl2|ENSMUSG00000032261.17|SH3 domain binding glutamic acid-rich protein like 2
mm39_v1_chr7_+_66872321_66872383	0.190347	UCACAGU	ENSMUST00000207757.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000058771.13|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000207823.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208698.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208998.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000179106.3|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4
mm39_v1_chr1_-_132953068_132953154	0.189667	UCACAGU	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr4_-_124755964_124756093	0.188461	UCACAGU	ENSMUST00000064444.8|Maneal|ENSMUSG00000042763.10|mannosidase, endo-alpha-like
mm39_v1_chr13_+_110531571_110531591	0.183497	UCACAGU	ENSMUST00000022212.9|Plk2|ENSMUSG00000021701.9|polo like kinase 2
mm39_v1_chrX_-_107877909_107877987	0.181412	UCACAGU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr11_-_120882131_120882165	0.179084	UCACAGU	ENSMUST00000239115.2|Csnk1d|ENSMUSG00000025162.19|casein kinase 1, delta	ENSMUST00000018274.10|Csnk1d|ENSMUSG00000025162.19|casein kinase 1, delta
mm39_v1_chr4_+_85972125_85972250	0.176563	UCACAGU	ENSMUST00000107178.9|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000048885.12|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000141889.8|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000120678.2|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1
mm39_v1_chr17_-_48235560_48235577	0.176452	UCACAGU	ENSMUST00000113265.8|Foxp4|ENSMUSG00000023991.17|forkhead box P4
mm39_v1_chr2_-_18042548_18042548	0.176177	UCACAGU	ENSMUST00000066163.3|A930004D18Rik|ENSMUSG00000054057.3|RIKEN cDNA A930004D18 gene
mm39_v1_chr18_+_34354031_34354073	0.174157	UCACAGU	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr10_+_121200984_121201063	0.174018	UCACAGU	ENSMUST00000040344.7|Gns|ENSMUSG00000034707.8|glucosamine (N-acetyl)-6-sulfatase
mm39_v1_chr8_-_112580910_112580988	0.173196	UCACAGU	ENSMUST00000034432.7|Cfdp1|ENSMUSG00000031954.7|craniofacial development protein 1
mm39_v1_chr6_-_55658242_55658255	0.171504	UCACAGU	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr11_+_98828495_98828559	0.170328	UCACAGU	ENSMUST00000107475.9|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha	ENSMUST00000068133.10|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr1_+_64571942_64572013	0.169863	UCACAGU	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr2_-_37537224_37537297	0.169592	UCACAGU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr13_-_95511837_95511877	0.169058	UCACAGU	ENSMUST00000022189.9|Aggf1|ENSMUSG00000021681.9|angiogenic factor with G patch and FHA domains 1
mm39_v1_chr13_+_73615316_73615435	0.168614	UCACAGU	ENSMUST00000022099.15|Lpcat1|ENSMUSG00000021608.16|lysophosphatidylcholine acyltransferase 1
mm39_v1_chr11_+_49684984_49685014	0.168359	UCACAGU	ENSMUST00000020629.5|Gfpt2|ENSMUSG00000020363.7|glutamine fructose-6-phosphate transaminase 2
mm39_v1_chr15_+_54434576_54434596	0.164011	UCACAGU	ENSMUST00000025356.4|Mal2|ENSMUSG00000024479.4|mal, T cell differentiation protein 2
mm39_v1_chr15_-_83989801_83989955	0.163817	UCACAGU	ENSMUST00000229826.2|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1	ENSMUST00000082365.6|Sult4a1|ENSMUSG00000018865.10|sulfotransferase family 4A, member 1
mm39_v1_chr4_+_40970906_40971026	0.160639	UCACAGU	ENSMUST00000091614.7|Nfx1|ENSMUSG00000028423.16|nuclear transcription factor, X-box binding 1	ENSMUST00000030133.15|Nfx1|ENSMUSG00000028423.16|nuclear transcription factor, X-box binding 1	ENSMUST00000098143.11|Nfx1|ENSMUSG00000028423.16|nuclear transcription factor, X-box binding 1
mm39_v1_chr5_-_24652775_24652852	0.160466	UCACAGU	ENSMUST00000123167.2|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1	ENSMUST00000030799.15|Tmub1|ENSMUSG00000028958.16|transmembrane and ubiquitin-like domain containing 1
mm39_v1_chr10_+_60182630_60182791	0.158762	UCACAGU	ENSMUST00000020301.14|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor	ENSMUST00000105460.8|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor	ENSMUST00000170507.8|Vsir|ENSMUSG00000020101.15|V-set immunoregulatory receptor
mm39_v1_chr1_+_171097891_171097935	0.158123	UCACAGU	ENSMUST00000064272.10|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000151863.8|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000141999.8|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000111313.10|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	ENSMUST00000126699.4|B4galt3|ENSMUSG00000052423.16|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3
mm39_v1_chr11_+_79883885_79883963	0.157789	UCACAGU	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr15_+_99568208_99568278	0.157788	UCACAGU	ENSMUST00000023758.9|Asic1|ENSMUSG00000023017.11|acid-sensing (proton-gated) ion channel 1
mm39_v1_chr11_-_86248395_86248442	0.157282	UCACAGU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr16_-_10810964_10810985	0.152675	UCACAGU	ENSMUST00000023143.14|Litaf|ENSMUSG00000022500.16|LPS-induced TN factor
mm39_v1_chr12_+_4967376_4967438	0.151798	UCACAGU	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr3_-_104960437_104960467	0.150924	UCACAGU	ENSMUST00000077548.12|Cttnbp2nl|ENSMUSG00000062127.12|CTTNBP2 N-terminal like
mm39_v1_chr12_+_111132779_111132832	0.149519	UCACAGU	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr3_-_32419609_32419840	0.148633	UCACAGU	ENSMUST00000139660.2|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000168566.3|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000029199.11|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3
mm39_v1_chr11_-_86884507_86884538	0.146426	UCACAGU	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr18_-_88912446_88912497	0.14543	UCACAGU	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr2_+_179684288_179684355	0.143949	UCACAGU	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr13_-_99653045_99653092	0.13992	UCACAGU	ENSMUST00000064762.6|Map1b|ENSMUSG00000052727.7|microtubule-associated protein 1B
mm39_v1_chr12_-_72117865_72117899	0.139826	UCACAGU	ENSMUST00000050649.6|Gpr135|ENSMUSG00000043398.6|G protein-coupled receptor 135
mm39_v1_chr2_-_163760603_163760603	0.139294	UCACAGU	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr4_-_148711453_148711492	0.138133	UCACAGU	ENSMUST00000165113.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000172073.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000105702.9|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000084125.10|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein
mm39_v1_chr1_+_156386414_156386619	0.137307	UCACAGU	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr15_-_11996084_11996144	0.136967	UCACAGU	ENSMUST00000022816.15|Sub1|ENSMUSG00000022205.16|SUB1 homolog, transcriptional regulator
mm39_v1_chr1_+_133173826_133173844	0.134973	UCACAGU	ENSMUST00000105082.9|Plekha6|ENSMUSG00000041757.18|pleckstrin homology domain containing, family A member 6	ENSMUST00000038295.15|Plekha6|ENSMUSG00000041757.18|pleckstrin homology domain containing, family A member 6
mm39_v1_chr5_+_146168020_146168195	0.134148	UCACAGU	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr4_+_62883796_62883854	0.133298	UCACAGU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr15_-_33687986_33688030	0.132218	UCACAGU	ENSMUST00000042021.5|Tspyl5|ENSMUSG00000038984.5|testis-specific protein, Y-encoded-like 5
mm39_v1_chr11_-_86435579_86435631	0.131865	UCACAGU	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr1_+_151631088_151631148	0.130339	UCACAGU	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr16_+_90182895_90182910	0.129513	UCACAGU	ENSMUST00000065856.8|Hunk|ENSMUSG00000053414.9|hormonally upregulated Neu-associated kinase
mm39_v1_chr2_-_167334746_167334812	0.126559	UCACAGU	ENSMUST00000109211.9|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2	ENSMUST00000057627.16|Spata2|ENSMUSG00000047030.16|spermatogenesis associated 2
mm39_v1_chr2_-_156921135_156921196	0.125963	UCACAGU	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr1_-_151965876_151965918	0.123468	UCACAGU	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr2_+_124452493_124452534	0.117463	UCACAGU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr15_-_102425241_102425499	0.116693	UCACAGU	ENSMUST00000169162.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000023812.10|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000165174.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169367.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169377.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12
mm39_v1_chr15_-_96358612_96358724	0.113543	UCACAGU	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr1_-_135513443_135513555	0.113281	UCACAGU	ENSMUST00000067414.13|Nav1|ENSMUSG00000009418.17|neuron navigator 1
mm39_v1_chr11_-_75060345_75060345	0.112774	UCACAGU	ENSMUST00000055619.5|Hic1|ENSMUSG00000043099.5|hypermethylated in cancer 1
mm39_v1_chr1_-_63153675_63153826	0.112587	UCACAGU	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr12_-_110662765_110662852	0.112361	UCACAGU	ENSMUST00000094361.11|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr13_-_43457626_43457689	0.112127	UCACAGU	ENSMUST00000055341.7|Gfod1|ENSMUSG00000051335.7|glucose-fructose oxidoreductase domain containing 1
mm39_v1_chr3_+_28317354_28317364	0.111929	UCACAGU	ENSMUST00000159236.9|Tnik|ENSMUSG00000027692.17|TRAF2 and NCK interacting kinase
mm39_v1_chr10_-_117681864_117681940	0.111729	UCACAGU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr16_-_95928804_95928939	0.111432	UCACAGU	ENSMUST00000233292.2|Hmgn1|ENSMUSG00000040681.17|high mobility group nucleosomal binding domain 1	ENSMUST00000050884.16|Hmgn1|ENSMUSG00000040681.17|high mobility group nucleosomal binding domain 1
mm39_v1_chr5_-_22755274_22755384	0.110749	UCACAGU	ENSMUST00000030872.12|Orc5|ENSMUSG00000029012.12|origin recognition complex, subunit 5
mm39_v1_chr5_-_24235646_24235705	0.10935	UCACAGU	ENSMUST00000197617.5|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A	ENSMUST00000030849.13|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chr5_+_3393893_3393945	0.108849	UCACAGU	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr15_+_96185399_96185487	0.103913	UCACAGU	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr17_+_34148485_34148560	0.102708	UCACAGU	ENSMUST00000047503.16|Rgl2|ENSMUSG00000041354.17|ral guanine nucleotide dissociation stimulator-like 2
mm39_v1_chr3_+_7431717_7431730	0.102354	UCACAGU	ENSMUST00000192468.2|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha	ENSMUST00000028999.12|Pkia|ENSMUSG00000027499.13|protein kinase inhibitor, alpha
mm39_v1_chr10_+_111808569_111808710	0.09993	UCACAGU	ENSMUST00000163048.8|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)	ENSMUST00000174653.2|Krr1|ENSMUSG00000063334.17|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm39_v1_chr2_-_38955452_38955513	0.0964692	UCACAGU	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr8_+_104828253_104828342	0.094674	UCACAGU	ENSMUST00000034339.10|Cdh5|ENSMUSG00000031871.10|cadherin 5
mm39_v1_chr9_-_58943670_58943743	0.0941791	UCACAGU	ENSMUST00000214547.2|Neo1|ENSMUSG00000032340.9|neogenin	ENSMUST00000068664.7|Neo1|ENSMUSG00000032340.9|neogenin
mm39_v1_chr3_+_86131970_86132025	0.0926988	UCACAGU	ENSMUST00000192145.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000194759.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000107635.7|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor
mm39_v1_chr1_-_131455039_131455123	0.0923537	UCACAGU	ENSMUST00000097588.9|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2	ENSMUST00000186543.7|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr8_-_11528615_11528710	0.0914411	UCACAGU	ENSMUST00000033900.7|Rab20|ENSMUSG00000031504.7|RAB20, member RAS oncogene family
mm39_v1_chr6_-_112924205_112924239	0.090773	UCACAGU	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr10_-_86334700_86334730	0.0890069	UCACAGU	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr12_+_109418759_109418775	0.0882228	UCACAGU	ENSMUST00000056110.15|Dlk1|ENSMUSG00000040856.18|delta like non-canonical Notch ligand 1
mm39_v1_chr8_-_70449018_70449038	0.0880715	UCACAGU	ENSMUST00000065169.12|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A	ENSMUST00000212478.2|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A
mm39_v1_chr10_+_83379805_83379873	0.0863734	UCACAGU	ENSMUST00000038388.7|Washc4|ENSMUSG00000034560.7|WASH complex subunit 4
mm39_v1_chr19_+_8734463_8734490	0.0859763	UCACAGU	ENSMUST00000184970.9|Nxf1|ENSMUSG00000010097.16|nuclear RNA export factor 1
mm39_v1_chr7_+_112278520_112278532	0.0840396	UCACAGU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr9_-_106666329_106666408	0.0831967	UCACAGU	ENSMUST00000046502.7|Rad54l2|ENSMUSG00000040661.7|RAD54 like 2 (S. cerevisiae)
mm39_v1_chr17_+_15163446_15163463	0.0812557	UCACAGU	ENSMUST00000052691.9|1600012H06Rik|ENSMUSG00000050088.10|RIKEN cDNA 1600012H06 gene
mm39_v1_chr11_-_96668318_96668385	0.080364	UCACAGU	ENSMUST00000127375.2|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000021246.9|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000107661.10|Snx11|ENSMUSG00000020876.15|sorting nexin 11
mm39_v1_chrX_-_12628309_12628318	0.0802533	UCACAGU	ENSMUST00000096495.11|Med14|ENSMUSG00000064127.14|mediator complex subunit 14	ENSMUST00000076016.6|Med14|ENSMUSG00000064127.14|mediator complex subunit 14
mm39_v1_chr11_-_65160767_65160780	0.0785579	UCACAGU	ENSMUST00000102635.10|Myocd|ENSMUSG00000020542.19|myocardin
mm39_v1_chr19_-_31742427_31742480	0.0772743	UCACAGU	ENSMUST00000065067.14|Prkg1|ENSMUSG00000052920.17|protein kinase, cGMP-dependent, type I
mm39_v1_chr2_-_120394288_120394350	0.0755657	UCACAGU	ENSMUST00000055241.13|Zfp106|ENSMUSG00000027288.17|zinc finger protein 106	ENSMUST00000135625.8|Zfp106|ENSMUSG00000027288.17|zinc finger protein 106
mm39_v1_chr1_-_97589675_97589799	0.0727977	UCACAGU	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr9_-_15023396_15023415	0.0725723	UCACAGU	ENSMUST00000159985.2|Hephl1|ENSMUSG00000031936.10|hephaestin-like 1
mm39_v1_chr7_+_140641010_140641022	0.0719565	UCACAGU	ENSMUST00000048002.7|B4galnt4|ENSMUSG00000055629.6|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm39_v1_chr11_+_80367839_80367910	0.0713898	UCACAGU	ENSMUST00000053413.12|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	ENSMUST00000147694.2|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm39_v1_chr17_-_24360516_24360569	0.0709631	UCACAGU	ENSMUST00000115411.8|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115409.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000115407.9|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1	ENSMUST00000102927.10|Pdpk1|ENSMUSG00000024122.17|3-phosphoinositide dependent protein kinase 1
mm39_v1_chr16_+_91855158_91855216	0.0696372	UCACAGU	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr16_+_27207599_27207619	0.0682971	UCACAGU	ENSMUST00000239351.2|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50	ENSMUST00000100026.10|Ccdc50|ENSMUSG00000038127.16|coiled-coil domain containing 50
mm39_v1_chr2_-_23462052_23462124	0.0675876	UCACAGU	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr11_-_103588605_103588724	0.0672553	UCACAGU	ENSMUST00000021329.14|Gosr2|ENSMUSG00000020946.14|golgi SNAP receptor complex member 2
mm39_v1_chr15_-_27630724_27630800	0.0657985	UCACAGU	ENSMUST00000059662.8|Otulin|ENSMUSG00000046034.9|OTU deubiquitinase with linear linkage specificity
mm39_v1_chr13_+_46822992_46823022	0.0641949	UCACAGU	ENSMUST00000099547.4|Fam8a1|ENSMUSG00000069237.9|family with sequence similarity 8, member A1
mm39_v1_chr2_+_38401655_38401764	0.0635449	UCACAGU	ENSMUST00000054234.10|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6	ENSMUST00000112902.8|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6
mm39_v1_chr9_+_108337726_108337771	0.0603717	UCACAGU	ENSMUST00000061209.7|Ccdc71|ENSMUSG00000049305.7|coiled-coil domain containing 71	ENSMUST00000193269.2|Ccdc71|ENSMUSG00000049305.7|coiled-coil domain containing 71
mm39_v1_chr10_-_121312212_121312252	0.0580392	UCACAGU	ENSMUST00000026902.9|Rassf3|ENSMUSG00000025795.9|Ras association (RalGDS/AF-6) domain family member 3
mm39_v1_chr12_-_4957705_4957754	0.0579871	UCACAGU	ENSMUST00000020962.12|Ubxn2a|ENSMUSG00000020634.13|UBX domain protein 2A
mm39_v1_chr17_-_57338468_57338538	0.0576923	UCACAGU	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr9_-_70411000_70411092	0.056703	UCACAGU	ENSMUST00000034739.12|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr12_+_102095260_102095433	0.0537519	UCACAGU	ENSMUST00000079020.12|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr5_-_135423353_135423412	0.0496634	UCACAGU	ENSMUST00000111171.6|Pom121|ENSMUSG00000053293.10|nuclear pore membrane protein 121
mm39_v1_chr7_+_57069417_57069440	0.0485894	UCACAGU	ENSMUST00000085240.11|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr11_-_97171294_97171464	0.0464557	UCACAGU	ENSMUST00000167806.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000172108.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000001480.14|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive
mm39_v1_chr1_-_10302895_10302895	0.0461223	UCACAGU	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr10_-_108846816_108846844	0.0446534	UCACAGU	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr4_+_149188585_149188647	0.0428239	UCACAGU	ENSMUST00000103216.10|Dffa|ENSMUSG00000028974.14|DNA fragmentation factor, alpha subunit	ENSMUST00000030816.4|Dffa|ENSMUSG00000028974.14|DNA fragmentation factor, alpha subunit
mm39_v1_chr7_+_64151435_64151454	0.0424014	UCACAGU	ENSMUST00000032732.15|Apba2|ENSMUSG00000030519.15|amyloid beta (A4) precursor protein-binding, family A, member 2
mm39_v1_chr11_+_105069591_105069633	0.0408098	UCACAGU	ENSMUST00000106939.9|Tlk2|ENSMUSG00000020694.18|tousled-like kinase 2 (Arabidopsis)
mm39_v1_chr2_-_167503416_167503502	0.0375356	UCACAGU	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr6_-_134543876_134543959	0.034973	UCACAGU	ENSMUST00000032322.15|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6	ENSMUST00000126836.4|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6
mm39_v1_chr4_-_132237804_132237820	0.0345816	UCACAGU	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr3_+_62245765_62245765	0.0340814	UCACAGU	ENSMUST00000079300.13|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr2_-_85027041_85027051	0.0335243	UCACAGU	ENSMUST00000099930.9|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55	ENSMUST00000111601.2|Lrrc55|ENSMUSG00000075224.11|leucine rich repeat containing 55
mm39_v1_chr2_+_157120946_157121066	0.0332819	UCACAGU	ENSMUST00000116380.9|Rpn2|ENSMUSG00000027642.16|ribophorin II	ENSMUST00000029171.6|Rpn2|ENSMUSG00000027642.16|ribophorin II
mm39_v1_chr11_-_40646090_40646138	0.0317992	UCACAGU	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr12_+_80837284_80837348	0.0309707	UCACAGU	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr1_+_160733942_160734030	0.0300992	UCACAGU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr12_-_26465253_26465303	0.029254	UCACAGU	ENSMUST00000020971.14|Rnf144a|ENSMUSG00000020642.14|ring finger protein 144A
mm39_v1_chrX_-_55643429_55643467	0.0257149	UCACAGU	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr2_+_49509288_49509355	0.0249261	UCACAGU	ENSMUST00000028102.14|Kif5c|ENSMUSG00000026764.16|kinesin family member 5C
mm39_v1_chr3_+_89072096_89072172	0.0223039	UCACAGU	ENSMUST00000121212.9|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000152205.5|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000090927.12|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000148265.8|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2	ENSMUST00000121931.8|Clk2|ENSMUSG00000068917.13|CDC-like kinase 2
mm39_v1_chr17_+_28910302_28910316	0.0220299	UCACAGU	ENSMUST00000004990.14|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000114754.8|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000062694.16|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14
mm39_v1_chr7_-_110443557_110443664	0.0217672	UCACAGU	ENSMUST00000177462.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000176716.3|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000176746.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000177236.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141
mm39_v1_chr2_+_173579285_173579304	0.0210339	UCACAGU	ENSMUST00000067530.6|Vapb|ENSMUSG00000054455.6|vesicle-associated membrane protein, associated protein B and C
mm39_v1_chr8_+_26092252_26092335	0.0198442	UCACAGU	ENSMUST00000136107.9|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000146919.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000139966.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000142395.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000143445.2|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3
mm39_v1_chr8_-_61436249_61436353	0.019343	UCACAGU	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr15_+_102314809_102314833	0.018588	UCACAGU	ENSMUST00000001326.7|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1
mm39_v1_chr8_+_4288733_4288768	0.0156821	UCACAGU	ENSMUST00000110998.9|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7	ENSMUST00000062686.11|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7
mm39_v1_chr15_-_103275190_103275225	0.0146863	UCACAGU	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr11_+_120653613_120653624	0.00972375	UCACAGU	ENSMUST00000105046.4|Hmga1b|ENSMUSG00000078249.6|high mobility group AT-hook 1B
mm39_v1_chr6_+_31375670_31375795	0.00950571	UCACAGU	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr4_+_130297132_130297245	0.00833704	UCACAGU	ENSMUST00000105993.4|Nkain1|ENSMUSG00000078532.10|Na+/K+ transporting ATPase interacting 1
mm39_v1_chr16_+_29398149_29398160	0.00522847	UCACAGU	ENSMUST00000160597.8|Opa1|ENSMUSG00000038084.17|OPA1, mitochondrial dynamin like GTPase
mm39_v1_chr14_-_29443792_29443842	0.00503493	UCACAGU	ENSMUST00000022567.9|Cacna2d3|ENSMUSG00000021991.10|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm39_v1_chrX_+_84617624_84617756	0.00128267	UCACAGU	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
