mm39_v1_chr5_+_64960705_64960731	5.18937	UCACAUU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chrX_-_47543029_47543071	4.66195	UCACAUU	ENSMUST00000114958.8|Elf4|ENSMUSG00000031103.13|E74-like factor 4 (ets domain transcription factor)
mm39_v1_chr8_+_57964921_57964947	4.3571	UCACAUU	ENSMUST00000067925.8|Hmgb2|ENSMUSG00000054717.8|high mobility group box 2
mm39_v1_chr17_-_32074754_32074780	3.88811	UCACAUU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr10_-_117681864_117681940	3.86473	UCACAUU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr13_-_111945499_111945552	3.52273	UCACAUU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr3_-_83947416_83947482	3.09269	UCACAUU	ENSMUST00000192095.6|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like	ENSMUST00000191758.6|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like	ENSMUST00000052342.9|Tmem131l|ENSMUSG00000033767.15|transmembrane 131 like
mm39_v1_chr15_-_5273659_5273674	3.03873	UCACAUU	ENSMUST00000047379.15|Ptger4|ENSMUSG00000039942.16|prostaglandin E receptor 4 (subtype EP4)
mm39_v1_chr6_+_17463748_17463808	2.97115	UCACAUU	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr7_+_79836581_79836651	2.95885	UCACAUU	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr8_-_116434517_116434533	2.88646	UCACAUU	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr3_+_14951478_14951488	2.73749	UCACAUU	ENSMUST00000029078.9|Car2|ENSMUSG00000027562.13|carbonic anhydrase 2
mm39_v1_chr5_-_96309849_96309956	2.64132	UCACAUU	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr6_-_39183712_39183769	2.51412	UCACAUU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr5_-_136596299_136596390	2.44698	UCACAUU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr3_-_19365431_19365486	2.31972	UCACAUU	ENSMUST00000099195.10|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr4_+_129714494_129714503	2.30433	UCACAUU	ENSMUST00000165853.2|Ptp4a2|ENSMUSG00000028788.15|protein tyrosine phosphatase 4a2
mm39_v1_chr3_-_9069745_9069809	2.23352	UCACAUU	ENSMUST00000120143.8|Tpd52|ENSMUSG00000027506.16|tumor protein D52
mm39_v1_chr14_+_99283807_99283822	2.14136	UCACAUU	ENSMUST00000022656.8|Bora|ENSMUSG00000022070.8|bora, aurora kinase A activator
mm39_v1_chr11_-_53313950_53313997	2.11726	UCACAUU	ENSMUST00000036045.6|Leap2|ENSMUSG00000036216.6|liver-expressed antimicrobial peptide 2
mm39_v1_chr16_+_14523696_14523722	2.04593	UCACAUU	ENSMUST00000023356.8|Snai2|ENSMUSG00000022676.8|snail family zinc finger 2
mm39_v1_chr10_+_5543769_5543809	2.02413	UCACAUU	ENSMUST00000051809.10|Myct1|ENSMUSG00000046916.10|myc target 1
mm39_v1_chr10_-_37014859_37014933	2.0189	UCACAUU	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr8_-_48128164_48128201	2.01282	UCACAUU	ENSMUST00000080353.3|Ing2|ENSMUSG00000063049.5|inhibitor of growth family, member 2
mm39_v1_chr9_-_14663689_14663689	2.00063	UCACAUU	ENSMUST00000061498.7|Fut4|ENSMUSG00000049307.7|fucosyltransferase 4
mm39_v1_chr11_+_67061837_67061866	1.9985	UCACAUU	ENSMUST00000170159.8|Myh2|ENSMUSG00000033196.18|myosin, heavy polypeptide 2, skeletal muscle, adult
mm39_v1_chr16_+_24212284_24212320	1.98646	UCACAUU	ENSMUST00000038053.14|Lpp|ENSMUSG00000033306.16|LIM domain containing preferred translocation partner in lipoma
mm39_v1_chr10_+_79824418_79824517	1.93651	UCACAUU	ENSMUST00000004784.11|Cnn2|ENSMUSG00000004665.11|calponin 2	ENSMUST00000105374.2|Cnn2|ENSMUSG00000004665.11|calponin 2
mm39_v1_chr15_-_56557920_56557950	1.92642	UCACAUU	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr17_-_52139693_52139706	1.91355	UCACAUU	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr2_-_144112700_144112826	1.90845	UCACAUU	ENSMUST00000110030.10|Snx5|ENSMUSG00000027423.16|sorting nexin 5
mm39_v1_chr10_-_61288437_61288589	1.88165	UCACAUU	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr13_-_99027544_99027571	1.87972	UCACAUU	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr10_-_7831979_7832035	1.8697	UCACAUU	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr14_-_20231871_20231882	1.86634	UCACAUU	ENSMUST00000024011.10|Kcnk5|ENSMUSG00000023243.10|potassium channel, subfamily K, member 5
mm39_v1_chr3_-_105708632_105708694	1.86047	UCACAUU	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr9_-_85209162_85209183	1.79833	UCACAUU	ENSMUST00000034802.15|Tent5a|ENSMUSG00000032265.15|terminal nucleotidyltransferase 5A
mm39_v1_chr11_+_67090878_67090964	1.79651	UCACAUU	ENSMUST00000124516.8|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult	ENSMUST00000018637.15|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult	ENSMUST00000129018.8|Myh1|ENSMUSG00000056328.15|myosin, heavy polypeptide 1, skeletal muscle, adult
mm39_v1_chr2_-_113588983_113589000	1.78057	UCACAUU	ENSMUST00000099575.4|Grem1|ENSMUSG00000074934.4|gremlin 1, DAN family BMP antagonist
mm39_v1_chr6_+_54793894_54793905	1.76833	UCACAUU	ENSMUST00000079869.13|Znrf2|ENSMUSG00000058446.15|zinc and ring finger 2
mm39_v1_chr16_-_21982049_21982049	1.76475	UCACAUU	ENSMUST00000100052.11|Igf2bp2|ENSMUSG00000033581.18|insulin-like growth factor 2 mRNA binding protein 2
mm39_v1_chr2_-_75534985_75535023	1.75184	UCACAUU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr9_+_65536892_65536965	1.74746	UCACAUU	ENSMUST00000169003.8|Rbpms2|ENSMUSG00000032387.16|RNA binding protein with multiple splicing 2
mm39_v1_chr12_+_76417040_76417040	1.74563	UCACAUU	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr12_+_111005768_111005834	1.73441	UCACAUU	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr9_-_116004265_116004333	1.72804	UCACAUU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr7_-_99508117_99508184	1.71657	UCACAUU	ENSMUST00000209032.2|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)	ENSMUST00000036274.8|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm39_v1_chr15_+_59520199_59520217	1.66541	UCACAUU	ENSMUST00000067543.8|Trib1|ENSMUSG00000032501.10|tribbles pseudokinase 1
mm39_v1_chr9_+_30941924_30941997	1.66245	UCACAUU	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr3_+_51323383_51323465	1.65491	UCACAUU	ENSMUST00000029303.13|Naa15|ENSMUSG00000063273.12|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm39_v1_chr1_-_178165223_178165362	1.64243	UCACAUU	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr10_-_18891095_18891158	1.629	UCACAUU	ENSMUST00000019997.11|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr4_-_11007635_11007676	1.61037	UCACAUU	ENSMUST00000054776.4|Plekhf2|ENSMUSG00000049969.4|pleckstrin homology domain containing, family F (with FYVE domain) member 2
mm39_v1_chr7_-_115637970_115637985	1.60314	UCACAUU	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr2_+_153583194_153583214	1.59966	UCACAUU	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr19_+_32734884_32734900	1.59665	UCACAUU	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr6_-_39702381_39702413	1.58633	UCACAUU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr11_+_45946800_45946895	1.58512	UCACAUU	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr4_-_11386756_11386783	1.58347	UCACAUU	ENSMUST00000108313.8|Esrp1|ENSMUSG00000040728.16|epithelial splicing regulatory protein 1	ENSMUST00000108311.9|Esrp1|ENSMUSG00000040728.16|epithelial splicing regulatory protein 1
mm39_v1_chr10_-_118705029_118705091	1.57696	UCACAUU	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr2_-_104647041_104647138	1.5318	UCACAUU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr14_+_25694594_25694657	1.52887	UCACAUU	ENSMUST00000022419.7|Ppif|ENSMUSG00000021868.8|peptidylprolyl isomerase F (cyclophilin F)
mm39_v1_chr2_-_74489763_74489901	1.52408	UCACAUU	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr15_-_51855073_51855159	1.51895	UCACAUU	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr10_+_53473032_53473100	1.51759	UCACAUU	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr10_-_93146937_93147024	1.47998	UCACAUU	ENSMUST00000008542.12|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr4_-_34882917_34882964	1.46719	UCACAUU	ENSMUST00000098163.9|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292	ENSMUST00000047950.6|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292
mm39_v1_chr5_+_97145533_97145625	1.46561	UCACAUU	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chr4_+_8691303_8691381	1.4574	UCACAUU	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr18_+_56840813_56841028	1.45202	UCACAUU	ENSMUST00000025486.9|Lmnb1|ENSMUSG00000024590.9|lamin B1
mm39_v1_chr6_-_51989456_51989531	1.44641	UCACAUU	ENSMUST00000078214.8|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2	ENSMUST00000204778.3|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2
mm39_v1_chr1_+_132243849_132243883	1.44555	UCACAUU	ENSMUST00000072177.14|Nuak2|ENSMUSG00000009772.16|NUAK family, SNF1-like kinase, 2	ENSMUST00000082125.6|Nuak2|ENSMUSG00000009772.16|NUAK family, SNF1-like kinase, 2
mm39_v1_chr15_+_80595486_80595541	1.43423	UCACAUU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr7_-_98790275_98790356	1.42857	UCACAUU	ENSMUST00000037968.10|Uvrag|ENSMUSG00000035354.10|UV radiation resistance associated gene
mm39_v1_chr2_-_84255602_84255755	1.42346	UCACAUU	ENSMUST00000074262.9|Calcrl|ENSMUSG00000059588.14|calcitonin receptor-like
mm39_v1_chr2_+_14234198_14234215	1.42119	UCACAUU	ENSMUST00000028045.4|Mrc1|ENSMUSG00000026712.4|mannose receptor, C type 1
mm39_v1_chr15_+_84807582_84807625	1.41004	UCACAUU	ENSMUST00000165443.4|Nup50|ENSMUSG00000016619.11|nucleoporin 50
mm39_v1_chr8_-_123425805_123425859	1.38007	UCACAUU	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr16_-_4031814_4031861	1.33656	UCACAUU	ENSMUST00000023165.9|Crebbp|ENSMUSG00000022521.11|CREB binding protein
mm39_v1_chr2_+_152068729_152068828	1.32866	UCACAUU	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr6_+_141194886_141194995	1.32463	UCACAUU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr18_-_82710859_82711058	1.31637	UCACAUU	ENSMUST00000182122.8|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236	ENSMUST00000171071.9|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236
mm39_v1_chr4_-_133695204_133695263	1.31278	UCACAUU	ENSMUST00000100472.10|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2	ENSMUST00000136327.2|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr6_+_38410848_38410901	1.29566	UCACAUU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr13_+_24985640_24985640	1.28161	UCACAUU	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr11_+_53660834_53660886	1.27068	UCACAUU	ENSMUST00000108920.10|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1	ENSMUST00000140866.9|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1	ENSMUST00000108922.9|Irf1|ENSMUSG00000018899.18|interferon regulatory factor 1
mm39_v1_chr16_-_31898088_31898178	1.25854	UCACAUU	ENSMUST00000023467.9|Pak2|ENSMUSG00000022781.9|p21 (RAC1) activated kinase 2
mm39_v1_chr9_+_110361561_110361669	1.25574	UCACAUU	ENSMUST00000153838.8|Setd2|ENSMUSG00000044791.17|SET domain containing 2
mm39_v1_chr13_+_94194269_94194323	1.25207	UCACAUU	ENSMUST00000054274.8|Lhfpl2|ENSMUSG00000045312.13|lipoma HMGIC fusion partner-like 2
mm39_v1_chr1_-_64776890_64776915	1.25189	UCACAUU	ENSMUST00000116133.4|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5	ENSMUST00000063982.7|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5
mm39_v1_chr11_-_100713348_100713405	1.23113	UCACAUU	ENSMUST00000107358.9|Stat5b|ENSMUSG00000020919.12|signal transducer and activator of transcription 5B
mm39_v1_chr4_+_15265798_15265831	1.20236	UCACAUU	ENSMUST00000062684.9|Tmem64|ENSMUSG00000043252.9|transmembrane protein 64
mm39_v1_chr2_-_33321306_33321359	1.19209	UCACAUU	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr7_+_122723365_122723446	1.1863	UCACAUU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr5_-_107437427_107437514	1.16903	UCACAUU	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr11_-_106811507_106811599	1.14584	UCACAUU	ENSMUST00000103067.10|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chr2_+_74522258_74522284	1.14222	UCACAUU	ENSMUST00000061745.5|Hoxd10|ENSMUSG00000050368.5|homeobox D10
mm39_v1_chr14_+_65596070_65596135	1.13109	UCACAUU	ENSMUST00000066994.7|Zfp395|ENSMUSG00000034522.11|zinc finger protein 395
mm39_v1_chr11_+_3152612_3152667	1.11943	UCACAUU	ENSMUST00000110049.8|Eif4enif1|ENSMUSG00000020454.18|eukaryotic translation initiation factor 4E nuclear import factor 1
mm39_v1_chr13_+_95012107_95012119	1.10675	UCACAUU	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr8_-_73059104_73059104	1.10204	UCACAUU	ENSMUST00000075602.8|Gm10282|ENSMUSG00000070713.6|predicted pseudogene 10282
mm39_v1_chr19_+_56385531_56385562	1.07879	UCACAUU	ENSMUST00000026062.10|Casp7|ENSMUSG00000025076.13|caspase 7
mm39_v1_chr18_-_88912446_88912497	1.07193	UCACAUU	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr10_-_40018243_40018256	1.0677	UCACAUU	ENSMUST00000092566.8|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10	ENSMUST00000213488.2|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm39_v1_chr16_+_45044678_45044710	1.04273	UCACAUU	ENSMUST00000102802.10|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated	ENSMUST00000063654.6|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated
mm39_v1_chr7_-_67022520_67022609	1.0413	UCACAUU	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr19_+_40883127_40883180	1.02216	UCACAUU	ENSMUST00000050092.7|Zfp518a|ENSMUSG00000049164.8|zinc finger protein 518A
mm39_v1_chr11_+_77107006_77107113	1.01971	UCACAUU	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr1_+_39940043_39940123	1.01342	UCACAUU	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr1_+_59521583_59521583	1.00791	UCACAUU	ENSMUST00000114246.4|Fzd7|ENSMUSG00000041075.9|frizzled class receptor 7
mm39_v1_chr18_+_73706115_73706115	1.00754	UCACAUU	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr13_-_104057016_104057075	1.00168	UCACAUU	ENSMUST00000022222.12|Erbin|ENSMUSG00000021709.15|Erbb2 interacting protein
mm39_v1_chr10_+_84938452_84938491	0.989577	UCACAUU	ENSMUST00000095383.6|Tmem263|ENSMUSG00000060935.7|transmembrane protein 263
mm39_v1_chr19_+_21755689_21755727	0.978823	UCACAUU	ENSMUST00000096194.9|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2	ENSMUST00000025663.8|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2
mm39_v1_chr3_-_89820451_89820509	0.969078	UCACAUU	ENSMUST00000029559.7|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha	ENSMUST00000197679.5|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha
mm39_v1_chr16_+_43960183_43960263	0.966393	UCACAUU	ENSMUST00000159514.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000161326.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063520.15|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063542.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm39_v1_chr12_+_56742413_56742459	0.958158	UCACAUU	ENSMUST00000001538.10|Pax9|ENSMUSG00000001497.19|paired box 9
mm39_v1_chr2_-_70655997_70656163	0.953048	UCACAUU	ENSMUST00000038584.9|Tlk1|ENSMUSG00000041997.17|tousled-like kinase 1
mm39_v1_chr10_-_91007387_91007468	0.948427	UCACAUU	ENSMUST00000099355.12|Tmpo|ENSMUSG00000019961.18|thymopoietin	ENSMUST00000105293.11|Tmpo|ENSMUSG00000019961.18|thymopoietin	ENSMUST00000092219.14|Tmpo|ENSMUSG00000019961.18|thymopoietin	ENSMUST00000020123.7|Tmpo|ENSMUSG00000019961.18|thymopoietin	ENSMUST00000072239.14|Tmpo|ENSMUSG00000019961.18|thymopoietin
mm39_v1_chr1_-_151304191_151304225	0.937645	UCACAUU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr2_+_160487801_160487816	0.93392	UCACAUU	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr8_+_106363141_106363221	0.929519	UCACAUU	ENSMUST00000005841.16|Ctcf|ENSMUSG00000005698.16|CCCTC-binding factor
mm39_v1_chr10_-_116417333_116417416	0.919013	UCACAUU	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr8_+_105067159_105067255	0.912365	UCACAUU	ENSMUST00000212948.2|Cmtm3|ENSMUSG00000031875.8|CKLF-like MARVEL transmembrane domain containing 3	ENSMUST00000034343.5|Cmtm3|ENSMUSG00000031875.8|CKLF-like MARVEL transmembrane domain containing 3
mm39_v1_chr1_+_23801007_23801080	0.885708	UCACAUU	ENSMUST00000063663.6|B3gat2|ENSMUSG00000026156.9|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm39_v1_chr13_+_44884740_44884752	0.883875	UCACAUU	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr9_-_32452885_32452898	0.863776	UCACAUU	ENSMUST00000016231.14|Fli1|ENSMUSG00000016087.14|Friend leukemia integration 1
mm39_v1_chr11_-_84719779_84719798	0.860394	UCACAUU	ENSMUST00000047560.8|Dhrs11|ENSMUSG00000034449.8|dehydrogenase/reductase (SDR family) member 11
mm39_v1_chr3_+_41510160_41510195	0.84747	UCACAUU	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr1_+_53336229_53336254	0.812369	UCACAUU	ENSMUST00000027266.4|Ormdl1|ENSMUSG00000026097.10|ORM1-like 1 (S. cerevisiae)
mm39_v1_chr18_+_7869066_7869229	0.811267	UCACAUU	ENSMUST00000171486.8|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil	ENSMUST00000170932.8|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil	ENSMUST00000167020.8|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil
mm39_v1_chr15_-_73056713_73056822	0.810056	UCACAUU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr6_-_83418656_83418666	0.807773	UCACAUU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr8_-_85414528_85414539	0.80425	UCACAUU	ENSMUST00000001975.6|Nacc1|ENSMUSG00000001910.6|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
mm39_v1_chr6_-_3968365_3968381	0.786244	UCACAUU	ENSMUST00000031674.11|Tfpi2|ENSMUSG00000029664.11|tissue factor pathway inhibitor 2
mm39_v1_chr16_+_26281885_26282006	0.784554	UCACAUU	ENSMUST00000161053.8|Cldn16|ENSMUSG00000038148.14|claudin 16	ENSMUST00000115302.2|Cldn16|ENSMUSG00000038148.14|claudin 16
mm39_v1_chr5_+_145104011_145104074	0.777448	UCACAUU	ENSMUST00000160629.8|Cpsf4|ENSMUSG00000029625.17|cleavage and polyadenylation specific factor 4	ENSMUST00000070487.12|Cpsf4|ENSMUSG00000029625.17|cleavage and polyadenylation specific factor 4	ENSMUST00000160422.8|Cpsf4|ENSMUSG00000029625.17|cleavage and polyadenylation specific factor 4	ENSMUST00000162244.8|Cpsf4|ENSMUSG00000029625.17|cleavage and polyadenylation specific factor 4
mm39_v1_chr17_+_56891973_56892059	0.767444	UCACAUU	ENSMUST00000182533.8|Safb|ENSMUSG00000071054.13|scaffold attachment factor B	ENSMUST00000182800.8|Safb|ENSMUSG00000071054.13|scaffold attachment factor B	ENSMUST00000095224.11|Safb|ENSMUSG00000071054.13|scaffold attachment factor B
mm39_v1_chr8_-_112603292_112603382	0.765881	UCACAUU	ENSMUST00000034431.3|Tmem170|ENSMUSG00000031953.3|transmembrane protein 170
mm39_v1_chr11_-_79971750_79971828	0.764835	UCACAUU	ENSMUST00000103233.10|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3	ENSMUST00000061283.15|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3
mm39_v1_chr11_+_103007054_103007061	0.762552	UCACAUU	ENSMUST00000053063.7|Hexim1|ENSMUSG00000048878.7|hexamethylene bis-acetamide inducible 1
mm39_v1_chr4_+_124696336_124696381	0.760395	UCACAUU	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chrX_+_41156713_41156751	0.758126	UCACAUU	ENSMUST00000115094.8|Xiap|ENSMUSG00000025860.16|X-linked inhibitor of apoptosis
mm39_v1_chr12_+_78795763_78795793	0.751388	UCACAUU	ENSMUST00000082024.7|Mpp5|ENSMUSG00000021112.10|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm39_v1_chr18_-_57108405_57108452	0.746245	UCACAUU	ENSMUST00000139243.9|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene	ENSMUST00000025488.15|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene
mm39_v1_chr5_+_123280250_123280350	0.744751	UCACAUU	ENSMUST00000174836.8|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B	ENSMUST00000163030.9|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B
mm39_v1_chr3_+_16237371_16237447	0.742969	UCACAUU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr3_-_95725944_95726114	0.741103	UCACAUU	ENSMUST00000200164.5|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000090791.8|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000197449.2|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2
mm39_v1_chr8_-_96215401_96215480	0.740531	UCACAUU	ENSMUST00000212214.2|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide	ENSMUST00000056919.9|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide
mm39_v1_chr1_-_52539395_52539459	0.73549	UCACAUU	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr19_-_47452840_47452894	0.731697	UCACAUU	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr3_+_142236086_142236147	0.729737	UCACAUU	ENSMUST00000171263.8|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7	ENSMUST00000045097.11|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7
mm39_v1_chr19_-_60779077_60779105	0.72759	UCACAUU	ENSMUST00000025955.8|Eif3a|ENSMUSG00000024991.9|eukaryotic translation initiation factor 3, subunit A
mm39_v1_chr11_+_44508137_44508169	0.727338	UCACAUU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr8_+_36054919_36054981	0.725823	UCACAUU	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr1_-_181669891_181669949	0.713622	UCACAUU	ENSMUST00000193028.2|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000191878.6|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000005003.12|Lbr|ENSMUSG00000004880.12|lamin B receptor
mm39_v1_chr11_+_96209093_96209093	0.710768	UCACAUU	ENSMUST00000049241.9|Hoxb4|ENSMUSG00000038692.9|homeobox B4
mm39_v1_chr16_+_31482745_31482857	0.705488	UCACAUU	ENSMUST00000100001.10|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1	ENSMUST00000064477.14|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1
mm39_v1_chr9_+_44410417_44410569	0.699632	UCACAUU	ENSMUST00000074989.7|Bcl9l|ENSMUSG00000063382.7|B cell CLL/lymphoma 9-like	ENSMUST00000218913.2|Bcl9l|ENSMUSG00000063382.7|B cell CLL/lymphoma 9-like
mm39_v1_chr1_+_4878046_4878137	0.689727	UCACAUU	ENSMUST00000027036.11|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000150971.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000119612.9|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000137887.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000115529.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1
mm39_v1_chr6_+_15720653_15720747	0.689256	UCACAUU	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr4_-_136563154_136563299	0.684747	UCACAUU	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chr10_-_40759307_40759307	0.675905	UCACAUU	ENSMUST00000044166.9|Cdc40|ENSMUSG00000038446.9|cell division cycle 40
mm39_v1_chr12_-_56581823_56581891	0.668918	UCACAUU	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chr7_-_136916123_136916174	0.664931	UCACAUU	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr17_-_85995680_85995703	0.664343	UCACAUU	ENSMUST00000024947.8|Six2|ENSMUSG00000024134.12|sine oculis-related homeobox 2	ENSMUST00000163568.4|Six2|ENSMUSG00000024134.12|sine oculis-related homeobox 2
mm39_v1_chr12_+_110704378_110704459	0.659073	UCACAUU	ENSMUST00000193053.6|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20	ENSMUST00000095410.8|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20
mm39_v1_chr8_+_47192767_47192829	0.65866	UCACAUU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr2_+_29951859_29951880	0.651827	UCACAUU	ENSMUST00000102866.10|Set|ENSMUSG00000054766.14|SET nuclear oncogene
mm39_v1_chr1_-_80318197_80318229	0.649416	UCACAUU	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr18_+_36414122_36414204	0.647378	UCACAUU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr19_+_36903471_36903541	0.634567	UCACAUU	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr17_-_71158052_71158064	0.632046	UCACAUU	ENSMUST00000186358.6|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr9_+_72714156_72714156	0.630484	UCACAUU	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr3_-_86455575_86455597	0.623241	UCACAUU	ENSMUST00000077524.4|Mab21l2|ENSMUSG00000057777.5|mab-21-like 2
mm39_v1_chr1_-_74990821_74990837	0.62309	UCACAUU	ENSMUST00000164097.4|Ihh|ENSMUSG00000006538.13|Indian hedgehog
mm39_v1_chr5_+_115769960_115769992	0.61716	UCACAUU	ENSMUST00000031492.15|Rab35|ENSMUSG00000029518.16|RAB35, member RAS oncogene family
mm39_v1_chrX_-_51254129_51254157	0.603304	UCACAUU	ENSMUST00000033450.3|Gpc4|ENSMUSG00000031119.5|glypican 4
mm39_v1_chr6_+_83092476_83092556	0.585803	UCACAUU	ENSMUST00000032114.8|Mogs|ENSMUSG00000030036.9|mannosyl-oligosaccharide glucosidase
mm39_v1_chr2_-_34803988_34804055	0.581183	UCACAUU	ENSMUST00000028232.7|Phf19|ENSMUSG00000026873.10|PHD finger protein 19	ENSMUST00000202907.2|Phf19|ENSMUSG00000026873.10|PHD finger protein 19
mm39_v1_chr10_-_4338032_4338108	0.580998	UCACAUU	ENSMUST00000100078.10|Zbtb2|ENSMUSG00000075327.11|zinc finger and BTB domain containing 2
mm39_v1_chr11_+_105183463_105183495	0.576784	UCACAUU	ENSMUST00000100335.10|Mrc2|ENSMUSG00000020695.15|mannose receptor, C type 2	ENSMUST00000021038.5|Mrc2|ENSMUSG00000020695.15|mannose receptor, C type 2
mm39_v1_chr5_+_32616187_32616312	0.574121	UCACAUU	ENSMUST00000015100.15|Ppp1cb|ENSMUSG00000014956.16|protein phosphatase 1 catalytic subunit beta
mm39_v1_chr5_+_103902020_103902056	0.571083	UCACAUU	ENSMUST00000054979.10|Aff1|ENSMUSG00000029313.19|AF4/FMR2 family, member 1
mm39_v1_chr13_-_46118433_46118477	0.570023	UCACAUU	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr16_-_50252703_50252772	0.56964	UCACAUU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr4_+_129407374_129407437	0.566066	UCACAUU	ENSMUST00000062356.7|Marcksl1|ENSMUSG00000047945.7|MARCKS-like 1
mm39_v1_chr16_-_85698679_85698716	0.560736	UCACAUU	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr11_-_33113071_33113206	0.556717	UCACAUU	ENSMUST00000093201.13|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000101375.5|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000109354.10|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000075641.10|Npm1|ENSMUSG00000057113.14|nucleophosmin 1
mm39_v1_chr12_-_73160181_73160230	0.550716	UCACAUU	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr2_+_146063841_146063841	0.548614	UCACAUU	ENSMUST00000089257.6|Insm1|ENSMUSG00000068154.6|insulinoma-associated 1
mm39_v1_chr17_-_48144094_48144180	0.548035	UCACAUU	ENSMUST00000131971.2|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000129360.2|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000113280.8|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor	ENSMUST00000132125.8|Mdfi|ENSMUSG00000032717.15|MyoD family inhibitor
mm39_v1_chr18_+_35904541_35904655	0.541792	UCACAUU	ENSMUST00000170693.9|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000237984.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000167406.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A
mm39_v1_chr5_-_21156766_21156824	0.541651	UCACAUU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr7_+_98352298_98352348	0.537039	UCACAUU	ENSMUST00000033009.16|Thap12|ENSMUSG00000030753.16|THAP domain containing 12
mm39_v1_chr6_+_119456629_119456768	0.533047	UCACAUU	ENSMUST00000032094.7|Fbxl14|ENSMUSG00000030019.7|F-box and leucine-rich repeat protein 14
mm39_v1_chrX_-_141749704_141749730	0.531983	UCACAUU	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr8_-_91074971_91075014	0.530962	UCACAUU	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr5_-_52827015_52827071	0.525213	UCACAUU	ENSMUST00000031069.13|Sepsecs|ENSMUSG00000029173.13|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
mm39_v1_chr9_+_100956734_100956815	0.524093	UCACAUU	ENSMUST00000085177.5|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr17_-_56891576_56891606	0.515295	UCACAUU	ENSMUST00000075510.12|Safb2|ENSMUSG00000042625.17|scaffold attachment factor B2
mm39_v1_chr5_-_137784912_137784930	0.515011	UCACAUU	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr18_-_10610048_10610146	0.514874	UCACAUU	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chr7_+_65759198_65759263	0.512405	UCACAUU	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr5_+_124577952_124578061	0.5046	UCACAUU	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr7_-_113716996_113717023	0.490331	UCACAUU	ENSMUST00000069449.7|Rras2|ENSMUSG00000055723.7|related RAS viral (r-ras) oncogene 2
mm39_v1_chr2_+_72115981_72116093	0.479752	UCACAUU	ENSMUST00000090824.12|Map3k20|ENSMUSG00000004085.15|mitogen-activated protein kinase kinase kinase 20	ENSMUST00000135469.8|Map3k20|ENSMUSG00000004085.15|mitogen-activated protein kinase kinase kinase 20
mm39_v1_chr2_-_103627937_103628009	0.47902	UCACAUU	ENSMUST00000028607.13|Caprin1|ENSMUSG00000027184.15|cell cycle associated protein 1
mm39_v1_chr19_+_34268053_34268068	0.478258	UCACAUU	ENSMUST00000025691.13|Fas|ENSMUSG00000024778.14|Fas (TNF receptor superfamily member 6)
mm39_v1_chr19_-_41836514_41836571	0.476792	UCACAUU	ENSMUST00000059231.4|Frat2|ENSMUSG00000047604.4|frequently rearranged in advanced T cell lymphomas 2
mm39_v1_chr14_+_30741082_30741114	0.476371	UCACAUU	ENSMUST00000112098.11|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112095.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112106.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000146325.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr5_-_98178811_98178821	0.476316	UCACAUU	ENSMUST00000031281.14|Antxr2|ENSMUSG00000029338.14|anthrax toxin receptor 2
mm39_v1_chr1_-_155617773_155617790	0.47352	UCACAUU	ENSMUST00000027740.14|Lhx4|ENSMUSG00000026468.15|LIM homeobox protein 4
mm39_v1_chr2_+_38401655_38401764	0.472404	UCACAUU	ENSMUST00000054234.10|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6	ENSMUST00000112902.8|Nek6|ENSMUSG00000026749.12|NIMA (never in mitosis gene a)-related expressed kinase 6
mm39_v1_chr14_-_49304110_49304132	0.466795	UCACAUU	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr3_-_115800989_115801060	0.466588	UCACAUU	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr10_+_95776543_95776647	0.458175	UCACAUU	ENSMUST00000053484.8|Eea1|ENSMUSG00000036499.10|early endosome antigen 1
mm39_v1_chr9_+_98837325_98837344	0.458065	UCACAUU	ENSMUST00000051312.5|Foxl2|ENSMUSG00000050397.5|forkhead box L2
mm39_v1_chr1_+_105918383_105918450	0.457529	UCACAUU	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr12_-_104718159_104718211	0.45566	UCACAUU	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chrX_+_84617624_84617756	0.455116	UCACAUU	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr15_-_58953838_58953867	0.448755	UCACAUU	ENSMUST00000080371.8|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr2_+_164298854_164298940	0.444594	UCACAUU	ENSMUST00000109352.8|Sys1|ENSMUSG00000045503.17|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm39_v1_chr2_-_63928339_63928367	0.443201	UCACAUU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr11_+_77576981_77577005	0.440652	UCACAUU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr10_-_90918515_90918525	0.438056	UCACAUU	ENSMUST00000159110.8|Apaf1|ENSMUSG00000019979.13|apoptotic peptidase activating factor 1
mm39_v1_chr6_-_51446752_51446834	0.433092	UCACAUU	ENSMUST00000204188.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000203220.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000114459.8|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000090002.10|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr11_-_50183129_50183191	0.429734	UCACAUU	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr2_+_128659997_128660061	0.428469	UCACAUU	ENSMUST00000110325.8|Tmem87b|ENSMUSG00000014353.16|transmembrane protein 87B
mm39_v1_chr12_-_57592907_57592926	0.428467	UCACAUU	ENSMUST00000044380.8|Foxa1|ENSMUSG00000035451.8|forkhead box A1
mm39_v1_chr9_+_118307412_118307519	0.426352	UCACAUU	ENSMUST00000035020.15|Eomes|ENSMUSG00000032446.15|eomesodermin
mm39_v1_chr11_+_31822211_31822263	0.416199	UCACAUU	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr2_+_152511381_152511459	0.415164	UCACAUU	ENSMUST00000125366.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000109825.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000089059.9|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000079247.4|H13|ENSMUSG00000019188.17|histocompatibility 13
mm39_v1_chr4_+_132857816_132857901	0.41408	UCACAUU	ENSMUST00000084241.12|Wasf2|ENSMUSG00000028868.14|WASP family, member 2	ENSMUST00000138831.2|Wasf2|ENSMUSG00000028868.14|WASP family, member 2
mm39_v1_chr4_-_132237804_132237820	0.412336	UCACAUU	ENSMUST00000030724.9|Sesn2|ENSMUSG00000028893.9|sestrin 2
mm39_v1_chr6_-_100264439_100264461	0.411521	UCACAUU	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr6_+_8259379_8259404	0.411091	UCACAUU	ENSMUST00000162034.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr1_-_165830160_165830182	0.408311	UCACAUU	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr12_+_110816687_110816736	0.405223	UCACAUU	ENSMUST00000221549.2|Zfp839|ENSMUSG00000021271.6|zinc finger protein 839	ENSMUST00000170060.4|Zfp839|ENSMUSG00000021271.6|zinc finger protein 839
mm39_v1_chr11_+_95603494_95603529	0.401431	UCACAUU	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr16_+_8647959_8647966	0.39563	UCACAUU	ENSMUST00000023150.7|1810013L24Rik|ENSMUSG00000022507.7|RIKEN cDNA 1810013L24 gene
mm39_v1_chr3_-_79474989_79475000	0.394497	UCACAUU	ENSMUST00000076136.7|Fnip2|ENSMUSG00000061175.13|folliculin interacting protein 2
mm39_v1_chr12_+_83678987_83679099	0.388916	UCACAUU	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr13_+_91889626_91889650	0.388076	UCACAUU	ENSMUST00000022120.5|Acot12|ENSMUSG00000021620.5|acyl-CoA thioesterase 12
mm39_v1_chr15_-_66703471_66703516	0.386733	UCACAUU	ENSMUST00000164163.8|Sla|ENSMUSG00000022372.15|src-like adaptor
mm39_v1_chr13_+_104424359_104424432	0.383947	UCACAUU	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr4_+_59805829_59805914	0.381735	UCACAUU	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr6_+_97783975_97784028	0.379314	UCACAUU	ENSMUST00000203884.3|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor	ENSMUST00000043637.14|Mitf|ENSMUSG00000035158.16|melanogenesis associated transcription factor
mm39_v1_chr14_-_67246282_67246326	0.376633	UCACAUU	ENSMUST00000111115.8|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like	ENSMUST00000022634.9|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like
mm39_v1_chr18_+_42408418_42408457	0.375064	UCACAUU	ENSMUST00000091920.6|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000046972.14|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000236240.2|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27
mm39_v1_chr15_+_102862862_102862931	0.37286	UCACAUU	ENSMUST00000001701.4|Hoxc11|ENSMUSG00000001656.4|homeobox C11
mm39_v1_chrX_+_100298134_100298186	0.372372	UCACAUU	ENSMUST00000062000.6|Foxo4|ENSMUSG00000042903.9|forkhead box O4
mm39_v1_chr7_+_44397837_44397984	0.370386	UCACAUU	ENSMUST00000002275.15|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3
mm39_v1_chr2_+_28730418_28730475	0.36794	UCACAUU	ENSMUST00000113853.3|Ddx31|ENSMUSG00000026806.16|DEAD/H box helicase 31
mm39_v1_chr1_+_156386414_156386619	0.366871	UCACAUU	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr6_-_120015608_120015660	0.36248	UCACAUU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr10_+_11157047_11157103	0.360129	UCACAUU	ENSMUST00000129456.8|Fbxo30|ENSMUSG00000047648.14|F-box protein 30
mm39_v1_chr12_+_3857001_3857064	0.359738	UCACAUU	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chrX_+_159173680_159173726	0.355745	UCACAUU	ENSMUST00000112408.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112402.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112401.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112400.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112405.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000112404.9|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2	ENSMUST00000146805.8|Adgrg2|ENSMUSG00000031298.16|adhesion G protein-coupled receptor G2
mm39_v1_chr2_+_124452493_124452534	0.354174	UCACAUU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr13_+_92747586_92747624	0.351729	UCACAUU	ENSMUST00000049488.9|Serinc5|ENSMUSG00000021703.10|serine incorporator 5
mm39_v1_chr10_+_71183571_71183593	0.349299	UCACAUU	ENSMUST00000079252.13|Ipmk|ENSMUSG00000060733.14|inositol polyphosphate multikinase
mm39_v1_chrX_+_108138965_108138981	0.346546	UCACAUU	ENSMUST00000033598.9|Sh3bgrl|ENSMUSG00000031246.15|SH3-binding domain glutamic acid-rich protein like
mm39_v1_chr14_-_104760051_104760143	0.346028	UCACAUU	ENSMUST00000022716.4|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1	ENSMUST00000228448.2|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1	ENSMUST00000227640.2|Obi1|ENSMUSG00000022120.5|ORC ubiquitin ligase 1
mm39_v1_chr6_-_118174679_118174704	0.343736	UCACAUU	ENSMUST00000088790.9|Ret|ENSMUSG00000030110.14|ret proto-oncogene
mm39_v1_chr10_+_107998219_107998269	0.342326	UCACAUU	ENSMUST00000070663.6|Ppp1r12a|ENSMUSG00000019907.11|protein phosphatase 1, regulatory subunit 12A
mm39_v1_chr11_+_85202058_85202113	0.339469	UCACAUU	ENSMUST00000020835.16|Ppm1d|ENSMUSG00000020525.18|protein phosphatase 1D magnesium-dependent, delta isoform
mm39_v1_chr14_-_98406977_98407031	0.335897	UCACAUU	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr11_+_96194333_96194378	0.333683	UCACAUU	ENSMUST00000049272.5|Hoxb5|ENSMUSG00000038700.5|homeobox B5
mm39_v1_chr6_-_131270136_131270211	0.332617	UCACAUU	ENSMUST00000032307.12|Magohb|ENSMUSG00000030188.13|mago homolog B, exon junction complex core component
mm39_v1_chr17_-_45047521_45047561	0.330676	UCACAUU	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr5_+_33978035_33978173	0.327928	UCACAUU	ENSMUST00000075812.11|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000114397.9|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2	ENSMUST00000155880.8|Nsd2|ENSMUSG00000057406.17|nuclear receptor binding SET domain protein 2
mm39_v1_chr11_-_95956176_95956214	0.323192	UCACAUU	ENSMUST00000100528.5|Ube2z|ENSMUSG00000014349.8|ubiquitin-conjugating enzyme E2Z
mm39_v1_chr1_-_57011595_57011661	0.31888	UCACAUU	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr6_+_43242516_43242643	0.315783	UCACAUU	ENSMUST00000031750.14|Arhgef5|ENSMUSG00000033542.14|Rho guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr6_+_95094721_95094938	0.315617	UCACAUU	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr11_-_75060345_75060345	0.315095	UCACAUU	ENSMUST00000055619.5|Hic1|ENSMUSG00000043099.5|hypermethylated in cancer 1
mm39_v1_chr13_-_116446166_116446235	0.31476	UCACAUU	ENSMUST00000036060.13|Isl1|ENSMUSG00000042258.14|ISL1 transcription factor, LIM/homeodomain
mm39_v1_chr7_+_89779564_89779724	0.311343	UCACAUU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr17_-_29226965_29226976	0.306479	UCACAUU	ENSMUST00000009138.13|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38	ENSMUST00000119274.3|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr11_-_18968979_18968990	0.301912	UCACAUU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chrX_+_135950334_135950415	0.300685	UCACAUU	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chrX_+_19925772_19925813	0.293308	UCACAUU	ENSMUST00000044138.8|Chst7|ENSMUSG00000037347.8|carbohydrate (N-acetylglucosamino) sulfotransferase 7
mm39_v1_chr7_-_116042674_116042698	0.289678	UCACAUU	ENSMUST00000170430.3|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	ENSMUST00000206219.2|Pik3c2a|ENSMUSG00000030660.10|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha
mm39_v1_chr4_-_129083335_129083387	0.289284	UCACAUU	ENSMUST00000106061.9|S100pbp|ENSMUSG00000040928.16|S100P binding protein	ENSMUST00000072431.13|S100pbp|ENSMUSG00000040928.16|S100P binding protein
mm39_v1_chr19_+_24651362_24651381	0.288494	UCACAUU	ENSMUST00000057243.6|Tmem252|ENSMUSG00000048572.6|transmembrane protein 252
mm39_v1_chr4_-_82970384_82970422	0.287686	UCACAUU	ENSMUST00000170248.9|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chrX_+_18028814_18028897	0.286659	UCACAUU	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr8_-_79163269_79163278	0.285134	UCACAUU	ENSMUST00000034115.5|Pou4f2|ENSMUSG00000031688.5|POU domain, class 4, transcription factor 2
mm39_v1_chr16_-_45474413_45474431	0.281087	UCACAUU	ENSMUST00000036732.9|BC016579|ENSMUSG00000033187.9|cDNA sequence, BC016579
mm39_v1_chr1_+_138891447_138891539	0.275248	UCACAUU	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr9_+_44966464_44966494	0.274562	UCACAUU	ENSMUST00000114664.8|Mpzl3|ENSMUSG00000070305.11|myelin protein zero-like 3
mm39_v1_chr2_+_60040231_60040288	0.272467	UCACAUU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr2_+_163916042_163916140	0.272447	UCACAUU	ENSMUST00000018353.14|Stk4|ENSMUSG00000018209.16|serine/threonine kinase 4
mm39_v1_chr14_-_6104568_6104592	0.271408	UCACAUU	ENSMUST00000017629.12|Top2b|ENSMUSG00000017485.12|topoisomerase (DNA) II beta
mm39_v1_chr5_-_92822984_92823006	0.271339	UCACAUU	ENSMUST00000060930.10|Ccdc158|ENSMUSG00000050050.18|coiled-coil domain containing 158
mm39_v1_chr14_-_61677258_61677323	0.269317	UCACAUU	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr19_-_44095840_44095941	0.265444	UCACAUU	ENSMUST00000119591.2|Chuk|ENSMUSG00000025199.17|conserved helix-loop-helix ubiquitous kinase	ENSMUST00000026217.11|Chuk|ENSMUSG00000025199.17|conserved helix-loop-helix ubiquitous kinase
mm39_v1_chr8_+_35842872_35842920	0.264021	UCACAUU	ENSMUST00000210337.2|Ppp1r3b|ENSMUSG00000046794.10|protein phosphatase 1, regulatory subunit 3B	ENSMUST00000070481.8|Ppp1r3b|ENSMUSG00000046794.10|protein phosphatase 1, regulatory subunit 3B	ENSMUST00000211648.2|Ppp1r3b|ENSMUSG00000046794.10|protein phosphatase 1, regulatory subunit 3B
mm39_v1_chr13_-_115238427_115238520	0.262388	UCACAUU	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr12_-_102844537_102844709	0.25984	UCACAUU	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr4_-_129636073_129636106	0.259542	UCACAUU	ENSMUST00000066257.6|Khdrbs1|ENSMUSG00000028790.14|KH domain containing, RNA binding, signal transduction associated 1
mm39_v1_chrX_+_41238193_41238289	0.259538	UCACAUU	ENSMUST00000115073.9|Stag2|ENSMUSG00000025862.15|stromal antigen 2	ENSMUST00000115072.8|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr2_+_127205117_127205137	0.25367	UCACAUU	ENSMUST00000104934.2|Adra2b|ENSMUSG00000058620.6|adrenergic receptor, alpha 2b
mm39_v1_chr9_+_65816206_65816302	0.247694	UCACAUU	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr4_-_6990774_6990823	0.24498	UCACAUU	ENSMUST00000039987.4|Tox|ENSMUSG00000041272.12|thymocyte selection-associated high mobility group box
mm39_v1_chr8_+_57774010_57774027	0.235486	UCACAUU	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr17_+_83522700_83522721	0.234326	UCACAUU	ENSMUST00000170794.8|Pkdcc|ENSMUSG00000024247.15|protein kinase domain containing, cytoplasmic
mm39_v1_chr14_-_75185281_75185324	0.233248	UCACAUU	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr11_-_40646090_40646138	0.231029	UCACAUU	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr4_+_53826013_53826107	0.229721	UCACAUU	ENSMUST00000030127.13|Tmem38b|ENSMUSG00000028420.14|transmembrane protein 38B
mm39_v1_chr3_-_69034425_69034446	0.229271	UCACAUU	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr1_-_65218217_65218340	0.227087	UCACAUU	ENSMUST00000097709.11|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr16_+_65612083_65612154	0.226888	UCACAUU	ENSMUST00000168064.3|Vgll3|ENSMUSG00000091243.3|vestigial like family member 3
mm39_v1_chr2_-_30857858_30857949	0.223028	UCACAUU	ENSMUST00000028200.9|Tor1a|ENSMUSG00000026849.19|torsin family 1, member A (torsin A)
mm39_v1_chr13_+_56850795_56850925	0.217117	UCACAUU	ENSMUST00000069557.14|Smad5|ENSMUSG00000021540.17|SMAD family member 5	ENSMUST00000109876.8|Smad5|ENSMUSG00000021540.17|SMAD family member 5
mm39_v1_chr7_-_83533497_83533523	0.215643	UCACAUU	ENSMUST00000094216.5|Tlnrd1|ENSMUSG00000070462.5|talin rod domain containing 1
mm39_v1_chr4_+_43727180_43727204	0.214011	UCACAUU	ENSMUST00000095109.5|Hrct1|ENSMUSG00000071001.5|histidine rich carboxyl terminus 1
mm39_v1_chr18_-_38471962_38472056	0.213543	UCACAUU	ENSMUST00000139885.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000235590.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000237487.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000063814.15|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1
mm39_v1_chr3_+_137770813_137770839	0.212826	UCACAUU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr10_-_62628008_62628070	0.212636	UCACAUU	ENSMUST00000217768.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000020268.7|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000218946.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000219527.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1
mm39_v1_chr19_+_53517528_53517545	0.212291	UCACAUU	ENSMUST00000038287.7|Dusp5|ENSMUSG00000034765.7|dual specificity phosphatase 5
mm39_v1_chr1_-_191307648_191307671	0.212078	UCACAUU	ENSMUST00000027933.11|Dtl|ENSMUSG00000037474.14|denticleless E3 ubiquitin protein ligase
mm39_v1_chr4_-_118037240_118037251	0.210908	UCACAUU	ENSMUST00000106406.9|Kdm4a|ENSMUSG00000033326.16|lysine (K)-specific demethylase 4A
mm39_v1_chr10_+_69932930_69933066	0.21026	UCACAUU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr3_+_95496239_95496264	0.207727	UCACAUU	ENSMUST00000177390.8|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000060323.12|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000098861.11|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like
mm39_v1_chr7_+_112278520_112278532	0.206788	UCACAUU	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr13_-_100787481_100787592	0.205906	UCACAUU	ENSMUST00000177848.3|Rad17|ENSMUSG00000021635.15|RAD17 checkpoint clamp loader component	ENSMUST00000022136.14|Rad17|ENSMUSG00000021635.15|RAD17 checkpoint clamp loader component
mm39_v1_chr3_-_84489783_84489841	0.205714	UCACAUU	ENSMUST00000107687.9|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1	ENSMUST00000098990.10|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1
mm39_v1_chr12_-_102671154_102671240	0.204431	UCACAUU	ENSMUST00000178697.2|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase	ENSMUST00000046518.12|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase
mm39_v1_chr1_-_165762469_165762605	0.202285	UCACAUU	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr1_-_138547403_138547497	0.200425	UCACAUU	ENSMUST00000027642.5|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7	ENSMUST00000186017.7|Nek7|ENSMUSG00000026393.11|NIMA (never in mitosis gene a)-related expressed kinase 7
mm39_v1_chr3_-_151543088_151543267	0.194542	UCACAUU	ENSMUST00000029670.7|Ptgfr|ENSMUSG00000028036.7|prostaglandin F receptor
mm39_v1_chr11_-_116472272_116472298	0.193914	UCACAUU	ENSMUST00000082152.5|Ube2o|ENSMUSG00000020802.9|ubiquitin-conjugating enzyme E2O
mm39_v1_chr11_-_97171294_97171464	0.190506	UCACAUU	ENSMUST00000167806.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000172108.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000001480.14|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive
mm39_v1_chr17_-_88372671_88372719	0.189626	UCACAUU	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr1_-_13442658_13442681	0.188104	UCACAUU	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr8_+_80366247_80366333	0.187206	UCACAUU	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr1_-_155848917_155849012	0.180129	UCACAUU	ENSMUST00000138762.8|Cep350|ENSMUSG00000033671.19|centrosomal protein 350
mm39_v1_chr2_+_90770742_90770888	0.177649	UCACAUU	ENSMUST00000005643.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111451.10|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000177642.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068726.13|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068747.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr8_-_106937555_106937574	0.176775	UCACAUU	ENSMUST00000035925.7|Slc7a6os|ENSMUSG00000033106.7|solute carrier family 7, member 6 opposite strand
mm39_v1_chr9_-_115139489_115139516	0.175797	UCACAUU	ENSMUST00000035010.10|Stt3b|ENSMUSG00000032437.11|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm39_v1_chrX_+_36390430_36390455	0.175392	UCACAUU	ENSMUST00000016553.5|Nkap|ENSMUSG00000016409.5|NFKB activating protein
mm39_v1_chr12_-_75642969_75643036	0.171134	UCACAUU	ENSMUST00000021447.9|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon	ENSMUST00000220035.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr10_+_19810037_19810272	0.169826	UCACAUU	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr15_-_98769056_98769085	0.169032	UCACAUU	ENSMUST00000178486.9|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D	ENSMUST00000023741.16|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D
mm39_v1_chr1_-_63153675_63153826	0.168757	UCACAUU	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr15_-_96540760_96540865	0.167702	UCACAUU	ENSMUST00000088452.11|Slc38a1|ENSMUSG00000023169.16|solute carrier family 38, member 1
mm39_v1_chr11_+_75478890_75478968	0.167331	UCACAUU	ENSMUST00000143219.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha	ENSMUST00000179521.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha	ENSMUST00000179445.8|Pitpna|ENSMUSG00000017781.18|phosphatidylinositol transfer protein, alpha
mm39_v1_chr11_-_76737794_76737871	0.164191	UCACAUU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr11_+_6496875_6496941	0.163036	UCACAUU	ENSMUST00000000388.15|Ccm2|ENSMUSG00000000378.16|cerebral cavernous malformation 2	ENSMUST00000159007.8|Ccm2|ENSMUSG00000000378.16|cerebral cavernous malformation 2
mm39_v1_chr5_-_51711237_51711264	0.160155	UCACAUU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr13_-_111626562_111626645	0.159127	UCACAUU	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr15_-_82796308_82796390	0.158035	UCACAUU	ENSMUST00000109510.10|Tcf20|ENSMUSG00000041852.16|transcription factor 20	ENSMUST00000048966.7|Tcf20|ENSMUSG00000041852.16|transcription factor 20
mm39_v1_chr2_-_39116457_39116468	0.153303	UCACAUU	ENSMUST00000028087.6|Ppp6c|ENSMUSG00000026753.6|protein phosphatase 6, catalytic subunit
mm39_v1_chr4_+_97665843_97665870	0.153113	UCACAUU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr12_+_8724129_8724150	0.150877	UCACAUU	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr11_+_105975403_105975449	0.147416	UCACAUU	ENSMUST00000002044.10|Map3k3|ENSMUSG00000020700.12|mitogen-activated protein kinase kinase kinase 3
mm39_v1_chr9_-_65976984_65977024	0.146855	UCACAUU	ENSMUST00000044711.7|Snx22|ENSMUSG00000039452.7|sorting nexin 22
mm39_v1_chr11_+_81936531_81936547	0.146491	UCACAUU	ENSMUST00000021011.3|Ccl7|ENSMUSG00000035373.3|chemokine (C-C motif) ligand 7
mm39_v1_chr10_+_82695013_82695051	0.144825	UCACAUU	ENSMUST00000020484.9|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1	ENSMUST00000219962.3|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1
mm39_v1_chr2_-_125348305_125348328	0.143456	UCACAUU	ENSMUST00000028633.13|Fbn1|ENSMUSG00000027204.14|fibrillin 1
mm39_v1_chr2_+_32041083_32041274	0.137988	UCACAUU	ENSMUST00000036691.14|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B	ENSMUST00000069817.15|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B
mm39_v1_chr12_+_51394812_51394844	0.13758	UCACAUU	ENSMUST00000054308.13|G2e3|ENSMUSG00000035293.14|G2/M-phase specific E3 ubiquitin ligase
mm39_v1_chr4_+_155896946_155896987	0.136347	UCACAUU	ENSMUST00000030944.11|Ccnl2|ENSMUSG00000029068.17|cyclin L2
mm39_v1_chr10_-_59277570_59277630	0.13016	UCACAUU	ENSMUST00000009798.5|Oit3|ENSMUSG00000009654.5|oncoprotein induced transcript 3
mm39_v1_chr5_-_99400698_99400786	0.123892	UCACAUU	ENSMUST00000031276.15|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B	ENSMUST00000168092.8|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B
mm39_v1_chr14_-_70396859_70396951	0.122347	UCACAUU	ENSMUST00000058240.14|9930012K11Rik|ENSMUSG00000044551.14|RIKEN cDNA 9930012K11 gene	ENSMUST00000153871.2|9930012K11Rik|ENSMUSG00000044551.14|RIKEN cDNA 9930012K11 gene
mm39_v1_chr11_-_101010640_101010674	0.12097	UCACAUU	ENSMUST00000107295.10|Retreg3|ENSMUSG00000017802.15|reticulophagy regulator family member 3
mm39_v1_chr6_+_52690714_52690785	0.119725	UCACAUU	ENSMUST00000080723.11|Tax1bp1|ENSMUSG00000004535.13|Tax1 (human T cell leukemia virus type I) binding protein 1	ENSMUST00000149588.8|Tax1bp1|ENSMUSG00000004535.13|Tax1 (human T cell leukemia virus type I) binding protein 1
mm39_v1_chr15_-_10713621_10713632	0.119242	UCACAUU	ENSMUST00000090339.11|Rai14|ENSMUSG00000022246.15|retinoic acid induced 14
mm39_v1_chr12_+_16944896_16944904	0.119065	UCACAUU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr4_+_134042423_134042437	0.118593	UCACAUU	ENSMUST00000105875.8|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63	ENSMUST00000030638.7|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63
mm39_v1_chr10_-_13350106_13350185	0.118562	UCACAUU	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr9_+_65048454_65048494	0.113384	UCACAUU	ENSMUST00000034961.6|Igdcc3|ENSMUSG00000032394.7|immunoglobulin superfamily, DCC subclass, member 3	ENSMUST00000217371.2|Igdcc3|ENSMUSG00000032394.7|immunoglobulin superfamily, DCC subclass, member 3
mm39_v1_chr9_-_63665216_63665276	0.112511	UCACAUU	ENSMUST00000034973.10|Smad3|ENSMUSG00000032402.13|SMAD family member 3
mm39_v1_chr11_-_106679312_106679358	0.108852	UCACAUU	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr4_-_41275091_41275144	0.108414	UCACAUU	ENSMUST00000030143.13|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2	ENSMUST00000108068.8|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2
mm39_v1_chr7_+_138968988_138969077	0.104739	UCACAUU	ENSMUST00000106098.8|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A	ENSMUST00000026550.14|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A
mm39_v1_chr2_-_6889783_6889807	0.104108	UCACAUU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr4_+_53779694_53779722	0.103889	UCACAUU	ENSMUST00000030124.4|Tal2|ENSMUSG00000028417.4|T cell acute lymphocytic leukemia 2
mm39_v1_chr4_+_106173384_106173439	0.101316	UCACAUU	ENSMUST00000165709.8|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24	ENSMUST00000094933.5|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24
mm39_v1_chr2_-_104680104_104680221	0.100399	UCACAUU	ENSMUST00000028593.11|Prrg4|ENSMUSG00000027171.11|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
mm39_v1_chr10_+_52293617_52293677	0.10036	UCACAUU	ENSMUST00000023830.16|Nus1|ENSMUSG00000023068.17|NUS1 dehydrodolichyl diphosphate synthase subunit
mm39_v1_chr5_-_92231314_92231416	0.100063	UCACAUU	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr6_-_3763618_3763630	0.100025	UCACAUU	ENSMUST00000171613.8|Calcr|ENSMUSG00000023964.16|calcitonin receptor
mm39_v1_chr17_-_63806963_63807070	0.0969654	UCACAUU	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr10_-_45346297_45346386	0.0947746	UCACAUU	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chr3_-_133250129_133250174	0.0916327	UCACAUU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr10_+_4216353_4216380	0.0899208	UCACAUU	ENSMUST00000045730.7|Akap12|ENSMUSG00000038587.11|A kinase (PRKA) anchor protein (gravin) 12
mm39_v1_chr1_-_82564501_82564570	0.0860121	UCACAUU	ENSMUST00000087050.7|Col4a4|ENSMUSG00000067158.10|collagen, type IV, alpha 4
mm39_v1_chr5_+_142387226_142387284	0.0844974	UCACAUU	ENSMUST00000198422.2|Foxk1|ENSMUSG00000056493.10|forkhead box K1	ENSMUST00000072837.7|Foxk1|ENSMUSG00000056493.10|forkhead box K1
mm39_v1_chr18_+_53995156_53995215	0.0828372	UCACAUU	ENSMUST00000069597.8|Csnk1g3|ENSMUSG00000073563.4|casein kinase 1, gamma 3
mm39_v1_chr8_+_126637165_126637208	0.0825321	UCACAUU	ENSMUST00000034316.6|Map3k21|ENSMUSG00000031853.6|mitogen-activated protein kinase kinase kinase 21
mm39_v1_chr4_-_101122433_101122479	0.0818532	UCACAUU	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr6_+_143112936_143113026	0.0808418	UCACAUU	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr1_+_130645056_130645070	0.0808381	UCACAUU	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr10_-_115087309_115087384	0.0806221	UCACAUU	ENSMUST00000020339.10|Tbc1d15|ENSMUSG00000020130.10|TBC1 domain family, member 15
mm39_v1_chr10_-_53252210_53252261	0.07375	UCACAUU	ENSMUST00000095691.7|Cep85l|ENSMUSG00000038594.10|centrosomal protein 85-like
mm39_v1_chr11_-_86148344_86148376	0.0720668	UCACAUU	ENSMUST00000136469.2|Ints2|ENSMUSG00000018068.14|integrator complex subunit 2	ENSMUST00000018212.13|Ints2|ENSMUSG00000018068.14|integrator complex subunit 2
mm39_v1_chr2_-_33358513_33358582	0.0717611	UCACAUU	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr9_-_96900876_96900933	0.0703196	UCACAUU	ENSMUST00000055433.5|Spsb4|ENSMUSG00000046997.6|splA/ryanodine receptor domain and SOCS box containing 4
mm39_v1_chr5_-_124563969_124564011	0.0691893	UCACAUU	ENSMUST00000065263.12|Sbno1|ENSMUSG00000038095.16|strawberry notch 1
mm39_v1_chr4_+_114263914_114263930	0.0655629	UCACAUU	ENSMUST00000094894.4|Trabd2b|ENSMUSG00000070867.5|TraB domain containing 2B
mm39_v1_chr7_-_144493560_144493606	0.0646622	UCACAUU	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chr19_+_46120327_46120344	0.0634582	UCACAUU	ENSMUST00000043739.6|Elovl3|ENSMUSG00000038754.6|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	ENSMUST00000237098.2|Elovl3|ENSMUSG00000038754.6|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
mm39_v1_chr9_-_99022107_99022186	0.0622364	UCACAUU	ENSMUST00000035037.14|Pik3cb|ENSMUSG00000032462.15|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta
mm39_v1_chr2_+_127089828_127089917	0.0574416	UCACAUU	ENSMUST00000035871.15|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127	ENSMUST00000174503.2|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127	ENSMUST00000174288.2|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127
mm39_v1_chr6_-_28421678_28421742	0.0547951	UCACAUU	ENSMUST00000090511.4|Gcc1|ENSMUSG00000029708.10|golgi coiled coil 1
mm39_v1_chr10_-_86541349_86541373	0.0536665	UCACAUU	ENSMUST00000020238.14|Hsp90b1|ENSMUSG00000020048.14|heat shock protein 90, beta (Grp94), member 1
mm39_v1_chr5_-_124465946_124466035	0.046122	UCACAUU	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr17_+_34258411_34258455	0.0439271	UCACAUU	ENSMUST00000087497.11|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000131134.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000235819.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114255.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114252.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000237989.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2
mm39_v1_chr13_+_92442488_92442488	0.0418357	UCACAUU	ENSMUST00000188317.2|Gm20379|ENSMUSG00000100622.2|predicted gene, 20379
mm39_v1_chr11_+_93776965_93777045	0.0414542	UCACAUU	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr16_+_35803674_35803765	0.0406584	UCACAUU	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr11_-_84761538_84761636	0.036947	UCACAUU	ENSMUST00000170741.2|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000172405.8|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000100686.10|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000108081.9|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2
mm39_v1_chr10_-_44334711_44334747	0.0354969	UCACAUU	ENSMUST00000039174.11|Prdm1|ENSMUSG00000038151.14|PR domain containing 1, with ZNF domain
mm39_v1_chr12_-_111874489_111874559	0.0349333	UCACAUU	ENSMUST00000054815.15|Ppp1r13b|ENSMUSG00000021285.16|protein phosphatase 1, regulatory subunit 13B
mm39_v1_chr6_-_148732946_148732992	0.034846	UCACAUU	ENSMUST00000048418.14|Ipo8|ENSMUSG00000040029.16|importin 8
mm39_v1_chr7_+_81220987_81221068	0.0342442	UCACAUU	ENSMUST00000165460.2|Whamm|ENSMUSG00000045795.11|WAS protein homolog associated with actin, golgi membranes and microtubules
mm39_v1_chr6_-_108162513_108162548	0.033125	UCACAUU	ENSMUST00000167338.8|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1	ENSMUST00000172188.2|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1	ENSMUST00000032191.16|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1
mm39_v1_chr4_+_109137462_109137513	0.0330446	UCACAUU	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr18_+_5591864_5591902	0.0312762	UCACAUU	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr2_+_154278357_154278455	0.0307902	UCACAUU	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr11_+_77985486_77985504	0.0259784	UCACAUU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr12_+_17316546_17316606	0.0221709	UCACAUU	ENSMUST00000057288.7|Pdia6|ENSMUSG00000020571.14|protein disulfide isomerase associated 6	ENSMUST00000239402.2|Pdia6|ENSMUSG00000020571.14|protein disulfide isomerase associated 6
mm39_v1_chrX_+_21581135_21581290	0.0217017	UCACAUU	ENSMUST00000033414.8|Slc6a14|ENSMUSG00000031089.8|solute carrier family 6 (neurotransmitter transporter), member 14
mm39_v1_chr1_+_85721132_85721262	0.0214442	UCACAUU	ENSMUST00000113360.8|Cab39|ENSMUSG00000036707.17|calcium binding protein 39	ENSMUST00000126962.3|Cab39|ENSMUSG00000036707.17|calcium binding protein 39
mm39_v1_chr9_+_70586232_70586292	0.0198164	UCACAUU	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr7_-_4998295_4998339	0.0183961	UCACAUU	ENSMUST00000162731.2|Zfp579|ENSMUSG00000051550.11|zinc finger protein 579
mm39_v1_chrX_-_135939007_135939058	0.0180562	UCACAUU	ENSMUST00000113070.9|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000113069.9|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53
mm39_v1_chr2_+_119505543_119505589	0.0164536	UCACAUU	ENSMUST00000028767.9|Rtf1|ENSMUSG00000027304.10|RTF1, Paf1/RNA polymerase II complex component
mm39_v1_chr9_-_62029877_62029900	0.0111142	UCACAUU	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr15_-_64184485_64184537	0.0104191	UCACAUU	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr19_+_5088854_5088967	0.0098567	UCACAUU	ENSMUST00000053705.8|B4gat1|ENSMUSG00000047379.8|beta-1,4-glucuronyltransferase 1	ENSMUST00000235776.2|B4gat1|ENSMUSG00000047379.8|beta-1,4-glucuronyltransferase 1
mm39_v1_chrX_+_137815171_137815187	0.00966068	UCACAUU	ENSMUST00000064937.14|Nrk|ENSMUSG00000052854.16|Nik related kinase	ENSMUST00000113052.8|Nrk|ENSMUSG00000052854.16|Nik related kinase
mm39_v1_chr5_-_33011530_33011600	0.00901903	UCACAUU	ENSMUST00000130134.3|Prr14l|ENSMUSG00000054280.15|proline rich 14-like	ENSMUST00000120129.9|Prr14l|ENSMUSG00000054280.15|proline rich 14-like
mm39_v1_chr11_-_51647290_51647445	0.00393989	UCACAUU	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr11_+_117006020_117006083	0.00362563	UCACAUU	ENSMUST00000103026.10|Sec14l1|ENSMUSG00000020823.17|SEC14-like lipid binding 1	ENSMUST00000090433.6|Sec14l1|ENSMUSG00000020823.17|SEC14-like lipid binding 1
