mm39_v1_chr8_+_55407872_55407889	2.68731	UCCCUUU	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr13_+_45660905_45660994	1.59039	UCCCUUU	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr13_+_74157538_74157572	1.57913	UCCCUUU	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr4_+_101276474_101276547	1.56246	UCCCUUU	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
mm39_v1_chr18_-_16942289_16942384	1.53371	UCCCUUU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr9_-_21963306_21963322	1.39137	UCCCUUU	ENSMUST00000003501.9|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3	ENSMUST00000215901.2|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3
mm39_v1_chr15_+_80057894_80057922	1.3624	UCCCUUU	ENSMUST00000044970.7|Mgat3|ENSMUSG00000042428.7|mannoside acetylglucosaminyltransferase 3
mm39_v1_chr15_-_78004211_78004232	1.29906	UCCCUUU	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr11_-_69451012_69451039	1.24896	UCCCUUU	ENSMUST00000004036.6|Efnb3|ENSMUSG00000003934.6|ephrin B3
mm39_v1_chr14_+_121272950_121272990	1.21838	UCCCUUU	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr5_-_51711237_51711264	1.18032	UCCCUUU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr6_-_113320858_113320945	1.09685	UCCCUUU	ENSMUST00000155543.2|Camk1|ENSMUSG00000030272.16|calcium/calmodulin-dependent protein kinase I	ENSMUST00000032409.15|Camk1|ENSMUSG00000030272.16|calcium/calmodulin-dependent protein kinase I
mm39_v1_chr1_+_75522902_75522957	1.08583	UCCCUUU	ENSMUST00000124341.8|Slc4a3|ENSMUSG00000006576.17|solute carrier family 4 (anion exchanger), member 3
mm39_v1_chr11_+_17109263_17109404	1.0843	UCCCUUU	ENSMUST00000102880.5|Ppp3r1|ENSMUSG00000033953.11|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm39_v1_chr6_-_57512355_57512433	1.0805	UCCCUUU	ENSMUST00000042766.6|Ppm1k|ENSMUSG00000037826.6|protein phosphatase 1K (PP2C domain containing)
mm39_v1_chrX_+_92330102_92330128	1.00734	UCCCUUU	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr7_+_44813363_44813448	1.00218	UCCCUUU	ENSMUST00000085374.7|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	ENSMUST00000209634.2|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm39_v1_chr9_+_57428490_57428613	0.942264	UCCCUUU	ENSMUST00000000090.8|Cox5a|ENSMUSG00000000088.8|cytochrome c oxidase subunit 5A
mm39_v1_chr15_+_58805605_58805685	0.912676	UCCCUUU	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr17_+_81251997_81252073	0.903823	UCCCUUU	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chr7_+_57069417_57069440	0.826046	UCCCUUU	ENSMUST00000085240.11|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr7_+_141142075_141142105	0.825768	UCCCUUU	ENSMUST00000003038.12|Ap2a2|ENSMUSG00000002957.12|adaptor-related protein complex 2, alpha 2 subunit
mm39_v1_chr1_+_187730018_187730031	0.821447	UCCCUUU	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr5_+_96521814_96521814	0.799063	UCCCUUU	ENSMUST00000036019.5|Fras1|ENSMUSG00000034687.9|Fraser extracellular matrix complex subunit 1
mm39_v1_chr13_+_41013230_41013299	0.785831	UCCCUUU	ENSMUST00000110191.10|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr2_-_73722874_73722900	0.783513	UCCCUUU	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr16_+_41353360_41353429	0.764768	UCCCUUU	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr6_-_39354570_39354612	0.761855	UCCCUUU	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr4_+_102617495_102617722	0.752935	UCCCUUU	ENSMUST00000072481.12|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000156596.8|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000080728.13|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000106882.9|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chr7_+_4122523_4122554	0.75162	UCCCUUU	ENSMUST00000119661.8|Ttyh1|ENSMUSG00000030428.17|tweety family member 1	ENSMUST00000129423.8|Ttyh1|ENSMUSG00000030428.17|tweety family member 1
mm39_v1_chr10_-_9550907_9550987	0.743579	UCCCUUU	ENSMUST00000100070.5|Samd5|ENSMUSG00000060487.8|sterile alpha motif domain containing 5
mm39_v1_chr14_-_39194782_39195045	0.721281	UCCCUUU	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr4_+_149602673_149602735	0.718918	UCCCUUU	ENSMUST00000030839.13|Ctnnbip1|ENSMUSG00000028988.14|catenin beta interacting protein 1
mm39_v1_chr18_+_77032080_77032145	0.67625	UCCCUUU	ENSMUST00000026485.15|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000150990.9|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000148955.3|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2
mm39_v1_chr2_+_107120934_107121005	0.640197	UCCCUUU	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chrX_-_143471176_143471176	0.638418	UCCCUUU	ENSMUST00000040184.4|Trpc5|ENSMUSG00000041710.5|transient receptor potential cation channel, subfamily C, member 5
mm39_v1_chr4_-_46991842_46991916	0.61728	UCCCUUU	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr8_+_77626400_77626456	0.613542	UCCCUUU	ENSMUST00000109913.9|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr7_-_105049197_105049261	0.607804	UCCCUUU	ENSMUST00000048079.14|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000118726.8|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000074686.10|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000122327.7|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000179474.9|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2
mm39_v1_chr4_+_152423075_152423166	0.603843	UCCCUUU	ENSMUST00000030775.12|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5	ENSMUST00000164662.8|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5
mm39_v1_chr6_+_17749169_17749266	0.600898	UCCCUUU	ENSMUST00000053148.14|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7	ENSMUST00000115417.4|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7
mm39_v1_chr15_+_39061612_39061758	0.588732	UCCCUUU	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr11_-_88742285_88742349	0.586935	UCCCUUU	ENSMUST00000107903.8|Akap1|ENSMUSG00000018428.16|A kinase (PRKA) anchor protein 1
mm39_v1_chr14_-_24295988_24295988	0.572508	UCCCUUU	ENSMUST00000073687.13|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5	ENSMUST00000090398.11|Dlg5|ENSMUSG00000021782.15|discs large MAGUK scaffold protein 5
mm39_v1_chr14_-_25769457_25769513	0.562855	UCCCUUU	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr4_+_57434247_57434369	0.532748	UCCCUUU	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr10_-_39901249_39901285	0.492651	UCCCUUU	ENSMUST00000163705.3|Mfsd4b1|ENSMUSG00000038522.8|major facilitator superfamily domain containing 4B1
mm39_v1_chrX_-_63320543_63320608	0.487566	UCCCUUU	ENSMUST00000114679.2|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4	ENSMUST00000069926.14|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4
mm39_v1_chr6_-_92191878_92191906	0.487197	UCCCUUU	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr13_+_31990604_31990633	0.486335	UCCCUUU	ENSMUST00000062292.5|Foxc1|ENSMUSG00000050295.5|forkhead box C1
mm39_v1_chr10_+_126914755_126914787	0.485297	UCCCUUU	ENSMUST00000039259.7|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	ENSMUST00000217941.2|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm39_v1_chr3_+_62245765_62245765	0.477953	UCCCUUU	ENSMUST00000079300.13|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr18_-_72484126_72484140	0.471114	UCCCUUU	ENSMUST00000114943.11|Dcc|ENSMUSG00000060534.17|deleted in colorectal carcinoma
mm39_v1_chr3_+_129326004_129326089	0.468984	UCCCUUU	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr12_-_46865709_46865720	0.451385	UCCCUUU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr2_-_130681978_130682070	0.446581	UCCCUUU	ENSMUST00000044766.15|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000138990.2|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000120316.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000110243.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr1_+_153528689_153528771	0.419187	UCCCUUU	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr4_+_28813125_28813139	0.405848	UCCCUUU	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr1_-_190643922_190644009	0.383768	UCCCUUU	ENSMUST00000159066.2|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1	ENSMUST00000061611.15|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr2_-_57004933_57005050	0.373495	UCCCUUU	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr14_-_61794330_61794339	0.361096	UCCCUUU	ENSMUST00000022497.15|Spryd7|ENSMUSG00000021930.15|SPRY domain containing 7
mm39_v1_chr9_-_60418286_60418318	0.351477	UCCCUUU	ENSMUST00000098660.10|Thsd4|ENSMUSG00000032289.16|thrombospondin, type I, domain containing 4
mm39_v1_chr10_-_84276454_84276468	0.347581	UCCCUUU	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr8_-_124709859_124709890	0.345472	UCCCUUU	ENSMUST00000075578.7|Abcb10|ENSMUSG00000031974.9|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm39_v1_chr15_-_77191079_77191128	0.341804	UCCCUUU	ENSMUST00000171751.10|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chrX_-_87159237_87159281	0.337809	UCCCUUU	ENSMUST00000113966.8|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1	ENSMUST00000113964.2|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1
mm39_v1_chr13_+_41403317_41403340	0.332902	UCCCUUU	ENSMUST00000165561.4|Smim13|ENSMUSG00000091264.4|small integral membrane protein 13
mm39_v1_chrX_+_92698469_92698587	0.329398	UCCCUUU	ENSMUST00000113933.9|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr6_+_41582416_41582503	0.319589	UCCCUUU	ENSMUST00000114732.3|Ephb6|ENSMUSG00000029869.8|Eph receptor B6
mm39_v1_chrX_-_56549092_56549117	0.31076	UCCCUUU	ENSMUST00000057645.6|Gpr101|ENSMUSG00000036357.6|G protein-coupled receptor 101
mm39_v1_chr2_+_116951855_116951880	0.300866	UCCCUUU	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chrX_+_100892981_100892998	0.297841	UCCCUUU	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr5_-_135963408_135963467	0.290132	UCCCUUU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr8_-_39128662_39128699	0.287414	UCCCUUU	ENSMUST00000118896.2|Sgcz|ENSMUSG00000039539.14|sarcoglycan zeta
mm39_v1_chr16_+_56942050_56942066	0.287055	UCCCUUU	ENSMUST00000166897.3|Tomm70a|ENSMUSG00000022752.10|translocase of outer mitochondrial membrane 70A
mm39_v1_chr7_+_109721230_109721342	0.2866	UCCCUUU	ENSMUST00000033326.10|Wee1|ENSMUSG00000031016.10|WEE 1 homolog 1 (S. pombe)
mm39_v1_chr1_-_84262274_84262366	0.278293	UCCCUUU	ENSMUST00000177458.2|Pid1|ENSMUSG00000045658.17|phosphotyrosine interaction domain containing 1	ENSMUST00000168574.9|Pid1|ENSMUSG00000045658.17|phosphotyrosine interaction domain containing 1
mm39_v1_chr15_+_68800261_68800271	0.27462	UCCCUUU	ENSMUST00000022954.7|Khdrbs3|ENSMUSG00000022332.9|KH domain containing, RNA binding, signal transduction associated 3
mm39_v1_chr2_-_5719302_5719349	0.27033	UCCCUUU	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr2_+_151923449_151923544	0.257952	UCCCUUU	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr18_+_23885390_23885458	0.244487	UCCCUUU	ENSMUST00000170802.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000155708.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000118826.9|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2
mm39_v1_chr2_+_179084220_179084235	0.241616	UCCCUUU	ENSMUST00000000314.13|Cdh4|ENSMUSG00000000305.13|cadherin 4
mm39_v1_chr6_-_31540913_31540924	0.239393	UCCCUUU	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chrX_-_23231245_23231329	0.23924	UCCCUUU	ENSMUST00000115313.8|Klhl13|ENSMUSG00000036782.14|kelch-like 13
mm39_v1_chr8_+_13209141_13209161	0.235984	UCCCUUU	ENSMUST00000033824.8|Lamp1|ENSMUSG00000031447.8|lysosomal-associated membrane protein 1
mm39_v1_chr2_+_109747984_109748003	0.231617	UCCCUUU	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chr19_-_18978463_18978483	0.226773	UCCCUUU	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr1_-_34882131_34882148	0.222635	UCCCUUU	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr5_-_123887434_123887483	0.221787	UCCCUUU	ENSMUST00000182955.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182489.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000183147.9|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000050827.14|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000057795.12|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000111515.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182309.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2
mm39_v1_chr1_-_170695328_170695354	0.221599	UCCCUUU	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr2_-_33777874_33777958	0.215383	UCCCUUU	ENSMUST00000041555.10|Mvb12b|ENSMUSG00000038740.10|multivesicular body subunit 12B
mm39_v1_chr10_-_29411857_29411868	0.207501	UCCCUUU	ENSMUST00000092623.5|Rspo3|ENSMUSG00000019880.11|R-spondin 3
mm39_v1_chr11_+_20151406_20151602	0.206393	UCCCUUU	ENSMUST00000020358.12|Rab1a|ENSMUSG00000020149.18|RAB1A, member RAS oncogene family	ENSMUST00000109602.8|Rab1a|ENSMUSG00000020149.18|RAB1A, member RAS oncogene family	ENSMUST00000109601.8|Rab1a|ENSMUSG00000020149.18|RAB1A, member RAS oncogene family	ENSMUST00000163483.2|Rab1a|ENSMUSG00000020149.18|RAB1A, member RAS oncogene family
mm39_v1_chr1_-_57011595_57011661	0.198884	UCCCUUU	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr9_-_106764627_106764627	0.196413	UCCCUUU	ENSMUST00000055843.9|Rbm15b|ENSMUSG00000074102.5|RNA binding motif protein 15B
mm39_v1_chr12_-_3359924_3359975	0.195982	UCCCUUU	ENSMUST00000021001.10|Rab10|ENSMUSG00000020671.10|RAB10, member RAS oncogene family
mm39_v1_chr18_-_64794338_64794338	0.188302	UCCCUUU	ENSMUST00000025482.10|Atp8b1|ENSMUSG00000039529.10|ATPase, class I, type 8B, member 1
mm39_v1_chr2_-_156833932_156834053	0.179802	UCCCUUU	ENSMUST00000109558.2|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3	ENSMUST00000069600.13|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3	ENSMUST00000072298.13|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3
mm39_v1_chr2_+_25070749_25070776	0.179415	UCCCUUU	ENSMUST00000104999.4|Nrarp|ENSMUSG00000078202.4|Notch-regulated ankyrin repeat protein
mm39_v1_chr2_-_103627937_103628009	0.174507	UCCCUUU	ENSMUST00000028607.13|Caprin1|ENSMUSG00000027184.15|cell cycle associated protein 1
mm39_v1_chr13_-_38842967_38843034	0.170254	UCCCUUU	ENSMUST00000001757.9|Eef1e1|ENSMUSG00000001707.9|eukaryotic translation elongation factor 1 epsilon 1
mm39_v1_chrX_-_55643429_55643467	0.170053	UCCCUUU	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr6_+_108760025_108760096	0.166602	UCCCUUU	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr11_-_120464062_120464107	0.166372	UCCCUUU	ENSMUST00000026122.11|P4hb|ENSMUSG00000025130.12|prolyl 4-hydroxylase, beta polypeptide
mm39_v1_chr3_-_56091096_56091122	0.165326	UCCCUUU	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chr15_-_98505508_98505519	0.144096	UCCCUUU	ENSMUST00000096224.6|Adcy6|ENSMUSG00000022994.10|adenylate cyclase 6
mm39_v1_chr12_-_104831266_104831288	0.142071	UCCCUUU	ENSMUST00000109937.9|Clmn|ENSMUSG00000021097.16|calmin
mm39_v1_chr8_-_91074971_91075014	0.140443	UCCCUUU	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr2_-_5900130_5900243	0.139989	UCCCUUU	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr3_+_95801263_95801289	0.139379	UCCCUUU	ENSMUST00000015894.12|Aph1a|ENSMUSG00000015750.16|aph1 homolog A, gamma secretase subunit
mm39_v1_chr6_+_114620054_114620066	0.137589	UCCCUUU	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr19_+_5088854_5088967	0.134948	UCCCUUU	ENSMUST00000053705.8|B4gat1|ENSMUSG00000047379.8|beta-1,4-glucuronyltransferase 1	ENSMUST00000235776.2|B4gat1|ENSMUSG00000047379.8|beta-1,4-glucuronyltransferase 1
mm39_v1_chr10_-_122912272_122912410	0.134669	UCCCUUU	ENSMUST00000219203.2|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking	ENSMUST00000073792.11|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking
mm39_v1_chr8_+_122317100_122317223	0.133668	UCCCUUU	ENSMUST00000034270.17|Map1lc3b|ENSMUSG00000031812.17|microtubule-associated protein 1 light chain 3 beta	ENSMUST00000181826.2|Map1lc3b|ENSMUSG00000031812.17|microtubule-associated protein 1 light chain 3 beta	ENSMUST00000181948.2|Map1lc3b|ENSMUSG00000031812.17|microtubule-associated protein 1 light chain 3 beta
mm39_v1_chr9_+_103879745_103879976	0.118278	UCCCUUU	ENSMUST00000035167.15|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)	ENSMUST00000194774.6|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)
mm39_v1_chr12_+_83810402_83810423	0.11125	UCCCUUU	ENSMUST00000121733.8|Papln|ENSMUSG00000021223.14|papilin, proteoglycan-like sulfated glycoprotein
mm39_v1_chrX_+_162691978_162692013	0.105268	UCCCUUU	ENSMUST00000069041.15|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chr13_-_45155616_45155627	0.105167	UCCCUUU	ENSMUST00000072329.15|Dtnbp1|ENSMUSG00000057531.15|dystrobrevin binding protein 1
mm39_v1_chr8_+_26609384_26609416	0.10467	UCCCUUU	ENSMUST00000014022.15|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000209300.2|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000153528.8|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000209707.2|Rnf170|ENSMUSG00000013878.19|ring finger protein 170
mm39_v1_chr18_+_51250748_51250822	0.102479	UCCCUUU	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr11_-_76737794_76737871	0.101952	UCCCUUU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr8_-_88531018_88531067	0.0998908	UCCCUUU	ENSMUST00000165770.9|Zfp423|ENSMUSG00000045333.16|zinc finger protein 423
mm39_v1_chr11_+_72580823_72580841	0.096535	UCCCUUU	ENSMUST00000155998.2|Ankfy1|ENSMUSG00000020790.15|ankyrin repeat and FYVE domain containing 1
mm39_v1_chr18_-_39623698_39623771	0.096335	UCCCUUU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr13_-_76091931_76092069	0.0950193	UCCCUUU	ENSMUST00000022078.12|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3	ENSMUST00000109606.3|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3
mm39_v1_chr8_-_122379631_122379652	0.0917176	UCCCUUU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr1_-_43137768_43137847	0.0897726	UCCCUUU	ENSMUST00000190427.7|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1	ENSMUST00000095014.8|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1
mm39_v1_chr8_+_110595216_110595243	0.0814598	UCCCUUU	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr5_+_105847811_105847907	0.0799486	UCCCUUU	ENSMUST00000060531.16|Lrrc8d|ENSMUSG00000046079.17|leucine rich repeat containing 8D
mm39_v1_chr5_+_124577952_124578061	0.076752	UCCCUUU	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr14_+_55120875_55120972	0.0756792	UCCCUUU	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr4_+_57845240_57845265	0.0742845	UCCCUUU	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr5_+_108609087_108609107	0.0739992	UCCCUUU	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr2_-_52314837_52314928	0.0733396	UCCCUUU	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr7_+_99184645_99184709	0.0704924	UCCCUUU	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr4_+_117109204_117109254	0.0679432	UCCCUUU	ENSMUST00000125943.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53	ENSMUST00000106434.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53
mm39_v1_chr11_+_80099843_80099884	0.0634962	UCCCUUU	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr2_+_31462780_31462841	0.0622514	UCCCUUU	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr18_+_69478790_69478882	0.0561437	UCCCUUU	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr4_+_57637817_57637845	0.0520843	UCCCUUU	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr19_-_12773472_12773510	0.0511475	UCCCUUU	ENSMUST00000038627.9|Zfp91|ENSMUSG00000024695.17|zinc finger protein 91
mm39_v1_chr6_-_118174679_118174704	0.0503146	UCCCUUU	ENSMUST00000088790.9|Ret|ENSMUSG00000030110.14|ret proto-oncogene
mm39_v1_chr4_-_58553311_58553357	0.0379119	UCCCUUU	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr6_-_138020409_138020479	0.035521	UCCCUUU	ENSMUST00000111873.8|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5	ENSMUST00000141280.3|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5
mm39_v1_chr5_-_135280063_135280134	0.0350711	UCCCUUU	ENSMUST00000062572.3|Fzd9|ENSMUSG00000049551.3|frizzled class receptor 9
mm39_v1_chr12_-_27392356_27392573	0.0323638	UCCCUUU	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr12_+_81073573_81073602	0.026014	UCCCUUU	ENSMUST00000110347.9|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000021564.11|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000129362.2|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1
mm39_v1_chr5_+_110324506_110324567	0.0131062	UCCCUUU	ENSMUST00000112512.8|Golga3|ENSMUSG00000029502.15|golgi autoantigen, golgin subfamily a, 3
mm39_v1_chr2_-_69416365_69416409	0.0130246	UCCCUUU	ENSMUST00000100051.9|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000092551.5|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000080953.12|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2
mm39_v1_chr1_-_163141230_163141246	0.0124175	UCCCUUU	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr7_-_128063354_128063397	0.00983502	UCCCUUU	ENSMUST00000106226.9|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1	ENSMUST00000106228.8|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm39_v1_chr9_-_113537277_113537327	0.00911847	UCCCUUU	ENSMUST00000111861.4|Pdcd6ip|ENSMUSG00000032504.16|programmed cell death 6 interacting protein	ENSMUST00000035086.13|Pdcd6ip|ENSMUSG00000032504.16|programmed cell death 6 interacting protein
mm39_v1_chr5_+_77122530_77122575	0.0027704	UCCCUUU	ENSMUST00000101087.10|Srp72|ENSMUSG00000036323.15|signal recognition particle 72	ENSMUST00000120550.2|Srp72|ENSMUSG00000036323.15|signal recognition particle 72
mm39_v1_chr7_+_127344942_127344999	0.00117911	UCCCUUU	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
