mm39_v1_chr4_-_87148672_87148714	3.67202	UGAAAUG	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chr3_-_31364500_31364527	3.60774	UGAAAUG	ENSMUST00000091259.9|Slc7a14|ENSMUSG00000069072.10|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm39_v1_chr15_+_18819033_18819048	3.43097	UGAAAUG	ENSMUST00000166873.9|Cdh10|ENSMUSG00000022321.16|cadherin 10
mm39_v1_chr14_+_111912529_111912556	3.30196	UGAAAUG	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr9_+_32027335_32027432	3.08765	UGAAAUG	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr12_-_11486544_11486655	3.03304	UGAAAUG	ENSMUST00000072299.7|Vsnl1|ENSMUSG00000054459.9|visinin-like 1
mm39_v1_chr2_+_158452651_158452693	2.77839	UGAAAUG	ENSMUST00000045738.5|Slc32a1|ENSMUSG00000037771.12|solute carrier family 32 (GABA vesicular transporter), member 1
mm39_v1_chr18_-_35348049_35348092	2.73677	UGAAAUG	ENSMUST00000091636.5|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2	ENSMUST00000236680.2|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2
mm39_v1_chr19_+_47003111_47003137	2.72973	UGAAAUG	ENSMUST00000037636.4|Ina|ENSMUSG00000034336.4|internexin neuronal intermediate filament protein, alpha
mm39_v1_chr12_+_38830081_38830116	2.65177	UGAAAUG	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr1_+_152830720_152830804	2.44753	UGAAAUG	ENSMUST00000043313.15|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2	ENSMUST00000186621.2|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2
mm39_v1_chr2_+_143388062_143388151	2.4139	UGAAAUG	ENSMUST00000028905.10|Pcsk2|ENSMUSG00000027419.10|proprotein convertase subtilisin/kexin type 2
mm39_v1_chr7_+_57069417_57069440	2.40077	UGAAAUG	ENSMUST00000085240.11|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr3_-_152687877_152687888	2.25185	UGAAAUG	ENSMUST00000044278.6|St6galnac5|ENSMUSG00000039037.6|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
mm39_v1_chr18_+_33072194_33072258	2.20514	UGAAAUG	ENSMUST00000042868.6|Camk4|ENSMUSG00000038128.8|calcium/calmodulin-dependent protein kinase IV
mm39_v1_chr5_-_103247920_103247954	2.13419	UGAAAUG	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr3_-_72965136_72965136	2.12179	UGAAAUG	ENSMUST00000059407.9|Slitrk3|ENSMUSG00000048304.9|SLIT and NTRK-like family, member 3
mm39_v1_chr2_-_73722874_73722900	2.05402	UGAAAUG	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr15_+_80057894_80057922	2.04609	UGAAAUG	ENSMUST00000044970.7|Mgat3|ENSMUSG00000042428.7|mannoside acetylglucosaminyltransferase 3
mm39_v1_chr16_-_67417768_67417810	1.93134	UGAAAUG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr13_+_75237939_75237952	1.84262	UGAAAUG	ENSMUST00000022075.6|Pcsk1|ENSMUSG00000021587.6|proprotein convertase subtilisin/kexin type 1
mm39_v1_chr1_+_17215581_17215655	1.82293	UGAAAUG	ENSMUST00000026879.8|Gdap1|ENSMUSG00000025777.9|ganglioside-induced differentiation-associated-protein 1
mm39_v1_chr12_-_46865709_46865720	1.82046	UGAAAUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr12_+_52746158_52746186	1.77076	UGAAAUG	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr12_-_14202041_14202070	1.64232	UGAAAUG	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr3_-_80820835_80820975	1.63699	UGAAAUG	ENSMUST00000107743.8|Glrb|ENSMUSG00000028020.17|glycine receptor, beta subunit	ENSMUST00000029654.15|Glrb|ENSMUSG00000028020.17|glycine receptor, beta subunit
mm39_v1_chr6_-_37276885_37276919	1.62545	UGAAAUG	ENSMUST00000101532.10|Dgki|ENSMUSG00000038665.16|diacylglycerol kinase, iota
mm39_v1_chr1_-_22031718_22031805	1.61021	UGAAAUG	ENSMUST00000029667.13|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173058.8|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173404.2|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5
mm39_v1_chr11_+_42310557_42310612	1.56049	UGAAAUG	ENSMUST00000007797.10|Gabrb2|ENSMUSG00000007653.13|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm39_v1_chr4_-_141966662_141966731	1.40491	UGAAAUG	ENSMUST00000036476.10|Kazn|ENSMUSG00000040606.15|kazrin, periplakin interacting protein
mm39_v1_chr4_-_57301791_57301837	1.3997	UGAAAUG	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr7_+_3381434_3381471	1.39858	UGAAAUG	ENSMUST00000092891.6|Cacng7|ENSMUSG00000069806.6|calcium channel, voltage-dependent, gamma subunit 7
mm39_v1_chr16_+_13804461_13804538	1.3574	UGAAAUG	ENSMUST00000056521.12|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000118412.8|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000131608.2|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1
mm39_v1_chr1_+_66507523_66507606	1.34163	UGAAAUG	ENSMUST00000061620.17|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator	ENSMUST00000212557.3|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator
mm39_v1_chr2_-_66240408_66240478	1.32231	UGAAAUG	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr13_+_93444514_93444542	1.30098	UGAAAUG	ENSMUST00000079086.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chrX_-_69408627_69408718	1.23671	UGAAAUG	ENSMUST00000101509.9|Ids|ENSMUSG00000035847.16|iduronate 2-sulfatase
mm39_v1_chr7_+_46045862_46045961	1.22037	UGAAAUG	ENSMUST00000025202.8|Kcnc1|ENSMUSG00000058975.8|potassium voltage gated channel, Shaw-related subfamily, member 1
mm39_v1_chr15_+_82159398_82159482	1.21831	UGAAAUG	ENSMUST00000023095.14|Septin3|ENSMUSG00000022456.19|septin 3	ENSMUST00000230365.2|Septin3|ENSMUSG00000022456.19|septin 3
mm39_v1_chr6_-_54543446_54543474	1.19833	UGAAAUG	ENSMUST00000019268.11|Scrn1|ENSMUSG00000019124.11|secernin 1
mm39_v1_chr2_+_73102269_73102283	1.18165	UGAAAUG	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr10_-_5872386_5872405	1.16506	UGAAAUG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr4_-_41695442_41695442	1.15294	UGAAAUG	ENSMUST00000102961.10|Cntfr|ENSMUSG00000028444.18|ciliary neurotrophic factor receptor
mm39_v1_chr5_+_14564932_14565007	1.13943	UGAAAUG	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr2_-_104240679_104240679	1.09341	UGAAAUG	ENSMUST00000136156.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000141159.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000089726.10|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene
mm39_v1_chr9_-_43027809_43027866	1.09076	UGAAAUG	ENSMUST00000216126.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000213544.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000061833.6|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5
mm39_v1_chr1_+_15382676_15382676	1.07568	UGAAAUG	ENSMUST00000170146.3|Kcnb2|ENSMUSG00000092083.5|potassium voltage gated channel, Shab-related subfamily, member 2
mm39_v1_chr4_-_149184259_149184333	1.06742	UGAAAUG	ENSMUST00000103217.11|Pex14|ENSMUSG00000028975.17|peroxisomal biogenesis factor 14
mm39_v1_chr2_-_167032068_167032093	1.06672	UGAAAUG	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr19_-_5040344_5040344	1.02036	UGAAAUG	ENSMUST00000056129.9|Npas4|ENSMUSG00000045903.10|neuronal PAS domain protein 4
mm39_v1_chr4_-_108158242_108158303	0.98285	UGAAAUG	ENSMUST00000043616.7|Zyg11b|ENSMUSG00000034636.10|zyg-ll family member B, cell cycle regulator
mm39_v1_chr13_-_58261406_58261469	0.978592	UGAAAUG	ENSMUST00000160860.9|Klhl3|ENSMUSG00000014164.16|kelch-like 3
mm39_v1_chr3_-_18297451_18297512	0.954661	UGAAAUG	ENSMUST00000035625.7|Cyp7b1|ENSMUSG00000039519.7|cytochrome P450, family 7, subfamily b, polypeptide 1
mm39_v1_chr5_+_91665474_91665553	0.952084	UGAAAUG	ENSMUST00000040576.10|Parm1|ENSMUSG00000034981.10|prostate androgen-regulated mucin-like protein 1
mm39_v1_chr11_+_89921121_89921184	0.94152	UGAAAUG	ENSMUST00000092788.4|Tmem100|ENSMUSG00000069763.4|transmembrane protein 100
mm39_v1_chr2_-_164013033_164013033	0.918269	UGAAAUG	ENSMUST00000045196.4|Kcns1|ENSMUSG00000040164.4|K+ voltage-gated channel, subfamily S, 1
mm39_v1_chr1_+_181180183_181180206	0.890307	UGAAAUG	ENSMUST00000161880.8|Cnih3|ENSMUSG00000026514.15|cornichon family AMPA receptor auxiliary protein 3	ENSMUST00000027795.14|Cnih3|ENSMUSG00000026514.15|cornichon family AMPA receptor auxiliary protein 3
mm39_v1_chr19_-_21449916_21450036	0.882827	UGAAAUG	ENSMUST00000087600.10|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chr2_+_107120934_107121005	0.879292	UGAAAUG	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr10_+_107107477_107107557	0.876148	UGAAAUG	ENSMUST00000020057.16|Lin7a|ENSMUSG00000019906.16|lin-7 homolog A (C. elegans)
mm39_v1_chr13_+_83652352_83652374	0.873263	UGAAAUG	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr5_-_45796857_45796956	0.856134	UGAAAUG	ENSMUST00000016023.9|Fam184b|ENSMUSG00000015879.9|family with sequence similarity 184, member B
mm39_v1_chr2_+_157266175_157266243	0.810148	UGAAAUG	ENSMUST00000029175.14|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene	ENSMUST00000092576.11|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene
mm39_v1_chr11_-_78588194_78588205	0.795778	UGAAAUG	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr7_+_83234118_83234300	0.794951	UGAAAUG	ENSMUST00000039317.14|Tmc3|ENSMUSG00000038540.15|transmembrane channel-like gene family 3	ENSMUST00000164944.2|Tmc3|ENSMUSG00000038540.15|transmembrane channel-like gene family 3
mm39_v1_chr1_-_23422230_23422300	0.778847	UGAAAUG	ENSMUST00000027343.6|Ogfrl1|ENSMUSG00000026158.12|opioid growth factor receptor-like 1
mm39_v1_chr1_-_58625431_58625482	0.747039	UGAAAUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr18_+_65713301_65713471	0.730454	UGAAAUG	ENSMUST00000049016.12|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000235493.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532	ENSMUST00000183236.2|Zfp532|ENSMUSG00000042439.14|zinc finger protein 532
mm39_v1_chr1_+_135693818_135693919	0.720934	UGAAAUG	ENSMUST00000038945.6|Phlda3|ENSMUSG00000041801.6|pleckstrin homology like domain, family A, member 3
mm39_v1_chr15_+_32244947_32244982	0.713229	UGAAAUG	ENSMUST00000067458.7|Sema5a|ENSMUSG00000022231.11|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm39_v1_chr15_-_100393369_100393369	0.693349	UGAAAUG	ENSMUST00000061457.7|Csrnp2|ENSMUSG00000044636.7|cysteine-serine-rich nuclear protein 2
mm39_v1_chr6_+_86826470_86826577	0.668473	UGAAAUG	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr11_-_86648309_86648399	0.667952	UGAAAUG	ENSMUST00000060766.16|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)	ENSMUST00000103186.11|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)
mm39_v1_chr4_+_101276474_101276547	0.666	UGAAAUG	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
mm39_v1_chr11_+_73158214_73158363	0.652175	UGAAAUG	ENSMUST00000049676.3|Trpv3|ENSMUSG00000043029.3|transient receptor potential cation channel, subfamily V, member 3
mm39_v1_chr18_-_7004717_7004780	0.650576	UGAAAUG	ENSMUST00000079788.7|Mkx|ENSMUSG00000061013.7|mohawk homeobox
mm39_v1_chr7_+_26958150_26958240	0.641319	UGAAAUG	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr16_+_95946591_95946653	0.627138	UGAAAUG	ENSMUST00000023913.11|Get1|ENSMUSG00000023147.18|guided entry of tail-anchored proteins factor 1	ENSMUST00000232832.2|Get1|ENSMUSG00000023147.18|guided entry of tail-anchored proteins factor 1	ENSMUST00000233566.2|Get1|ENSMUSG00000023147.18|guided entry of tail-anchored proteins factor 1	ENSMUST00000233273.2|Get1|ENSMUSG00000023147.18|guided entry of tail-anchored proteins factor 1
mm39_v1_chr9_-_76230839_76230893	0.600876	UGAAAUG	ENSMUST00000063140.15|Hcrtr2|ENSMUSG00000032360.17|hypocretin (orexin) receptor 2
mm39_v1_chr4_-_81360993_81361073	0.586934	UGAAAUG	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr3_-_56091096_56091122	0.580432	UGAAAUG	ENSMUST00000029374.8|Nbea|ENSMUSG00000027799.13|neurobeachin
mm39_v1_chrX_-_110606766_110606834	0.569216	UGAAAUG	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr7_+_112806672_112806803	0.542486	UGAAAUG	ENSMUST00000047321.9|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210074.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like	ENSMUST00000210238.2|Arntl|ENSMUSG00000055116.9|aryl hydrocarbon receptor nuclear translocator-like
mm39_v1_chrX_-_135644424_135644442	0.541965	UGAAAUG	ENSMUST00000166478.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2	ENSMUST00000113097.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2
mm39_v1_chr12_-_107969853_107969872	0.531413	UGAAAUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr17_+_58076565_58076565	0.53039	UGAAAUG	ENSMUST00000076038.7|Cntnap5c|ENSMUSG00000038048.9|contactin associated protein-like 5C
mm39_v1_chr3_-_32419609_32419840	0.529157	UGAAAUG	ENSMUST00000139660.2|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000168566.3|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3	ENSMUST00000029199.11|Zmat3|ENSMUSG00000027663.13|zinc finger matrin type 3
mm39_v1_chr1_+_75522902_75522957	0.526445	UGAAAUG	ENSMUST00000124341.8|Slc4a3|ENSMUSG00000006576.17|solute carrier family 4 (anion exchanger), member 3
mm39_v1_chr13_+_16189041_16189060	0.508656	UGAAAUG	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr19_+_10872778_10872790	0.486434	UGAAAUG	ENSMUST00000179297.3|Prpf19|ENSMUSG00000024735.14|pre-mRNA processing factor 19
mm39_v1_chr11_-_87249837_87249901	0.483538	UGAAAUG	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr10_-_84276454_84276468	0.480134	UGAAAUG	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr3_+_138231935_138231940	0.474936	UGAAAUG	ENSMUST00000029803.12|Eif4e|ENSMUSG00000028156.13|eukaryotic translation initiation factor 4E
mm39_v1_chr2_+_84564394_84564451	0.470854	UGAAAUG	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chrX_-_36166529_36166557	0.470673	UGAAAUG	ENSMUST00000057093.8|Nkrf|ENSMUSG00000044149.8|NF-kappaB repressing factor
mm39_v1_chr3_-_115508680_115508721	0.470606	UGAAAUG	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr13_-_70785753_70785865	0.462754	UGAAAUG	ENSMUST00000043493.7|Ice1|ENSMUSG00000034525.8|interactor of little elongation complex ELL subunit 1
mm39_v1_chr5_+_13449276_13449350	0.45153	UGAAAUG	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr2_+_173918715_173918859	0.449066	UGAAAUG	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr1_-_64995982_64995994	0.443273	UGAAAUG	ENSMUST00000097713.2|Plekhm3|ENSMUSG00000051344.14|pleckstrin homology domain containing, family M, member 3
mm39_v1_chr7_-_139162706_139162724	0.442648	UGAAAUG	ENSMUST00000106095.3|Nkx6-2|ENSMUSG00000041309.18|NK6 homeobox 2
mm39_v1_chr4_+_105014536_105014552	0.437136	UGAAAUG	ENSMUST00000064139.8|Plpp3|ENSMUSG00000028517.9|phospholipid phosphatase 3
mm39_v1_chr12_-_69403892_69403956	0.434397	UGAAAUG	ENSMUST00000222065.2|Nemf|ENSMUSG00000020982.10|nuclear export mediator factor	ENSMUST00000021368.10|Nemf|ENSMUSG00000020982.10|nuclear export mediator factor
mm39_v1_chr5_-_124018055_124018083	0.42886	UGAAAUG	ENSMUST00000164267.2|Hcar1|ENSMUSG00000049241.6|hydrocarboxylic acid receptor 1
mm39_v1_chr17_-_57366795_57366863	0.418846	UGAAAUG	ENSMUST00000040280.14|Slc25a23|ENSMUSG00000046329.15|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm39_v1_chr14_+_118374511_118374590	0.415892	UGAAAUG	ENSMUST00000022728.4|Gpr180|ENSMUSG00000022131.4|G protein-coupled receptor 180
mm39_v1_chr13_+_81859460_81859649	0.40545	UGAAAUG	ENSMUST00000057598.7|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2	ENSMUST00000224299.2|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2
mm39_v1_chr3_-_100592747_100592819	0.40424	UGAAAUG	ENSMUST00000008907.14|Man1a2|ENSMUSG00000008763.17|mannosidase, alpha, class 1A, member 2
mm39_v1_chr11_+_49737558_49737585	0.404065	UGAAAUG	ENSMUST00000109179.9|Mapk9|ENSMUSG00000020366.19|mitogen-activated protein kinase 9	ENSMUST00000178543.8|Mapk9|ENSMUSG00000020366.19|mitogen-activated protein kinase 9	ENSMUST00000164643.8|Mapk9|ENSMUSG00000020366.19|mitogen-activated protein kinase 9	ENSMUST00000020634.14|Mapk9|ENSMUSG00000020366.19|mitogen-activated protein kinase 9
mm39_v1_chr6_+_136495784_136495808	0.403847	UGAAAUG	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr7_-_35453818_35453879	0.396014	UGAAAUG	ENSMUST00000051377.15|Dpy19l3|ENSMUSG00000043671.15|dpy-19-like 3 (C. elegans)
mm39_v1_chr11_-_108234743_108234782	0.394022	UGAAAUG	ENSMUST00000059595.11|Prkca|ENSMUSG00000050965.15|protein kinase C, alpha
mm39_v1_chr1_+_160806194_160806226	0.381084	UGAAAUG	ENSMUST00000064725.11|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	ENSMUST00000191936.2|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm39_v1_chr4_-_135300934_135300954	0.371671	UGAAAUG	ENSMUST00000105855.2|Grhl3|ENSMUSG00000037188.8|grainyhead like transcription factor 3
mm39_v1_chr9_-_108329576_108329611	0.3582	UGAAAUG	ENSMUST00000035232.13|Klhdc8b|ENSMUSG00000032609.13|kelch domain containing 8B	ENSMUST00000195435.6|Klhdc8b|ENSMUSG00000032609.13|kelch domain containing 8B
mm39_v1_chr5_+_28276353_28276371	0.35625	UGAAAUG	ENSMUST00000059155.11|Insig1|ENSMUSG00000045294.12|insulin induced gene 1
mm39_v1_chr6_-_6882068_6882092	0.350744	UGAAAUG	ENSMUST00000142635.2|Dlx5|ENSMUSG00000029755.11|distal-less homeobox 5	ENSMUST00000052609.9|Dlx5|ENSMUSG00000029755.11|distal-less homeobox 5
mm39_v1_chr11_-_87716849_87716939	0.347127	UGAAAUG	ENSMUST00000103177.10|Lpo|ENSMUSG00000009356.13|lactoperoxidase
mm39_v1_chr19_+_55304703_55304799	0.345539	UGAAAUG	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr7_+_100355798_100355909	0.3365	UGAAAUG	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr8_-_92039850_92039905	0.336382	UGAAAUG	ENSMUST00000047783.14|Rpgrip1l|ENSMUSG00000033282.15|Rpgrip1-like
mm39_v1_chr2_+_48704121_48704187	0.33638	UGAAAUG	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr5_+_121535999_121536072	0.329995	UGAAAUG	ENSMUST00000042163.15|Naa25|ENSMUSG00000042719.18|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm39_v1_chr10_-_84963841_84963900	0.326991	UGAAAUG	ENSMUST00000214193.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000050813.4|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000217027.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2
mm39_v1_chr1_+_166828982_166828999	0.321237	UGAAAUG	ENSMUST00000165874.8|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B	ENSMUST00000190081.7|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B
mm39_v1_chr13_+_104315301_104315374	0.311685	UGAAAUG	ENSMUST00000022225.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23	ENSMUST00000069187.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23
mm39_v1_chr8_-_23698336_23698372	0.301789	UGAAAUG	ENSMUST00000167004.3|Gpat4|ENSMUSG00000031545.7|glycerol-3-phosphate acyltransferase 4
mm39_v1_chr1_-_182169150_182169190	0.30162	UGAAAUG	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr6_+_108760025_108760096	0.301357	UGAAAUG	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr1_+_85721132_85721262	0.294303	UGAAAUG	ENSMUST00000113360.8|Cab39|ENSMUSG00000036707.17|calcium binding protein 39	ENSMUST00000126962.3|Cab39|ENSMUSG00000036707.17|calcium binding protein 39
mm39_v1_chr10_-_39775182_39775266	0.292829	UGAAAUG	ENSMUST00000178045.9|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4	ENSMUST00000178563.3|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4
mm39_v1_chr2_-_37537224_37537297	0.290634	UGAAAUG	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr15_-_84872158_84872219	0.288767	UGAAAUG	ENSMUST00000165743.2|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene	ENSMUST00000047144.13|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene
mm39_v1_chr15_+_101071948_101072029	0.288207	UGAAAUG	ENSMUST00000000544.12|Acvr1b|ENSMUSG00000000532.12|activin A receptor, type 1B
mm39_v1_chr16_-_31094095_31094109	0.282732	UGAAAUG	ENSMUST00000060188.14|Ppp1r2|ENSMUSG00000047714.15|protein phosphatase 1, regulatory inhibitor subunit 2
mm39_v1_chr5_-_102217770_102217807	0.271907	UGAAAUG	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr5_+_130200639_130200720	0.247505	UGAAAUG	ENSMUST00000119797.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1	ENSMUST00000148264.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr16_+_38562616_38562683	0.24477	UGAAAUG	ENSMUST00000023482.13|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000114712.8|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	ENSMUST00000231655.2|B4galt4|ENSMUSG00000022793.18|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm39_v1_chr12_+_80690985_80691023	0.231213	UGAAAUG	ENSMUST00000219405.2|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9	ENSMUST00000085245.7|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9
mm39_v1_chr3_+_157239988_157240048	0.229155	UGAAAUG	ENSMUST00000029831.16|Zranb2|ENSMUSG00000028180.19|zinc finger, RAN-binding domain containing 2	ENSMUST00000106057.8|Zranb2|ENSMUSG00000028180.19|zinc finger, RAN-binding domain containing 2
mm39_v1_chr11_+_103857541_103857697	0.225516	UGAAAUG	ENSMUST00000057921.10|Arf2|ENSMUSG00000062421.14|ADP-ribosylation factor 2	ENSMUST00000063347.12|Arf2|ENSMUSG00000062421.14|ADP-ribosylation factor 2
mm39_v1_chr2_-_120801186_120801242	0.222863	UGAAAUG	ENSMUST00000028728.6|Ubr1|ENSMUSG00000027272.6|ubiquitin protein ligase E3 component n-recognin 1
mm39_v1_chr4_-_11322106_11322147	0.214927	UGAAAUG	ENSMUST00000084892.12|Dpy19l4|ENSMUSG00000045205.17|dpy-19-like 4 (C. elegans)	ENSMUST00000128024.8|Dpy19l4|ENSMUSG00000045205.17|dpy-19-like 4 (C. elegans)
mm39_v1_chr1_-_84912810_84912855	0.214601	UGAAAUG	ENSMUST00000027422.7|Slc16a14|ENSMUSG00000026220.7|solute carrier family 16 (monocarboxylic acid transporters), member 14
mm39_v1_chr11_-_20062876_20062925	0.212957	UGAAAUG	ENSMUST00000000137.8|Actr2|ENSMUSG00000020152.8|ARP2 actin-related protein 2
mm39_v1_chr6_+_8259379_8259404	0.210721	UGAAAUG	ENSMUST00000162034.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr16_+_95502911_95502960	0.200891	UGAAAUG	ENSMUST00000023612.17|Ets2|ENSMUSG00000022895.17|E26 avian leukemia oncogene 2, 3' domain
mm39_v1_chrX_-_20157966_20158078	0.200805	UGAAAUG	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr9_+_123921573_123921623	0.197416	UGAAAUG	ENSMUST00000111442.3|Ccr5|ENSMUSG00000079227.11|chemokine (C-C motif) receptor 5	ENSMUST00000171499.3|Ccr5|ENSMUSG00000079227.11|chemokine (C-C motif) receptor 5
mm39_v1_chr5_-_143255713_143255777	0.18953	UGAAAUG	ENSMUST00000161448.8|Zfp316|ENSMUSG00000046658.17|zinc finger protein 316
mm39_v1_chrX_-_102865546_102865598	0.185812	UGAAAUG	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr4_-_11076159_11076211	0.184292	UGAAAUG	ENSMUST00000058183.9|Ndufaf6|ENSMUSG00000050323.15|NADH:ubiquinone oxidoreductase complex assembly factor 6
mm39_v1_chr14_+_5894220_5894254	0.182265	UGAAAUG	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chrX_-_13712746_13712826	0.174701	UGAAAUG	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr16_-_17709457_17709564	0.174138	UGAAAUG	ENSMUST00000117082.2|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000066127.13|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000117945.8|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2	ENSMUST00000012152.13|Dgcr2|ENSMUSG00000003166.21|DiGeorge syndrome critical region gene 2
mm39_v1_chr13_-_89890609_89890634	0.172182	UGAAAUG	ENSMUST00000109546.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chrX_-_73129195_73129296	0.171936	UGAAAUG	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr18_+_38383297_38383340	0.166072	UGAAAUG	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr18_+_69478790_69478882	0.163488	UGAAAUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr12_-_3359924_3359975	0.162684	UGAAAUG	ENSMUST00000021001.10|Rab10|ENSMUSG00000020671.10|RAB10, member RAS oncogene family
mm39_v1_chr2_+_3119442_3119513	0.156277	UGAAAUG	ENSMUST00000091505.11|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr3_+_30847024_30847024	0.154724	UGAAAUG	ENSMUST00000029256.9|Sec62|ENSMUSG00000027706.9|SEC62 homolog (S. cerevisiae)
mm39_v1_chr2_-_151510453_151510453	0.150848	UGAAAUG	ENSMUST00000180195.8|Rad21l|ENSMUSG00000074704.10|RAD21-like (S. pombe)	ENSMUST00000096439.4|Rad21l|ENSMUSG00000074704.10|RAD21-like (S. pombe)
mm39_v1_chr2_+_31462780_31462841	0.14594	UGAAAUG	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr6_-_97125817_97125896	0.141792	UGAAAUG	ENSMUST00000204331.3|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000142116.2|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	ENSMUST00000113387.8|Eogt|ENSMUSG00000035245.13|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm39_v1_chr4_-_104967032_104967110	0.140905	UGAAAUG	ENSMUST00000030243.8|Prkaa2|ENSMUSG00000028518.9|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm39_v1_chr3_-_10396418_10396499	0.139671	UGAAAUG	ENSMUST00000191670.6|Impa1|ENSMUSG00000027531.17|inositol (myo)-1(or 4)-monophosphatase 1	ENSMUST00000065938.15|Impa1|ENSMUSG00000027531.17|inositol (myo)-1(or 4)-monophosphatase 1	ENSMUST00000118410.8|Impa1|ENSMUSG00000027531.17|inositol (myo)-1(or 4)-monophosphatase 1
mm39_v1_chr9_+_3532778_3532778	0.133838	UGAAAUG	ENSMUST00000115733.3|Gucy1a2|ENSMUSG00000041624.11|guanylate cyclase 1, soluble, alpha 2
mm39_v1_chr13_-_53135064_53135114	0.131492	UGAAAUG	ENSMUST00000071065.8|Nfil3|ENSMUSG00000056749.8|nuclear factor, interleukin 3, regulated
mm39_v1_chr4_+_54947976_54948054	0.124882	UGAAAUG	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr18_-_62044871_62044925	0.122848	UGAAAUG	ENSMUST00000166783.3|Ablim3|ENSMUSG00000032735.16|actin binding LIM protein family, member 3	ENSMUST00000049378.15|Ablim3|ENSMUSG00000032735.16|actin binding LIM protein family, member 3
mm39_v1_chr4_-_82423985_82424044	0.117066	UGAAAUG	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr5_-_25305621_25305655	0.115755	UGAAAUG	ENSMUST00000030784.14|Prkag2|ENSMUSG00000028944.15|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm39_v1_chr2_-_48839276_48839288	0.115704	UGAAAUG	ENSMUST00000028098.11|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4
mm39_v1_chr12_-_79136397_79136434	0.114825	UGAAAUG	ENSMUST00000217998.2|Pigh|ENSMUSG00000021120.12|phosphatidylinositol glycan anchor biosynthesis, class H	ENSMUST00000072154.9|Pigh|ENSMUSG00000021120.12|phosphatidylinositol glycan anchor biosynthesis, class H
mm39_v1_chr7_+_121666388_121666438	0.112861	UGAAAUG	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr3_+_31049896_31050017	0.110985	UGAAAUG	ENSMUST00000108249.9|Prkci|ENSMUSG00000037643.15|protein kinase C, iota
mm39_v1_chr11_+_60668350_60668390	0.109341	UGAAAUG	ENSMUST00000102667.5|Smcr8|ENSMUSG00000049323.9|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	ENSMUST00000056907.7|Smcr8|ENSMUSG00000049323.9|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
mm39_v1_chr14_+_120513076_120513094	0.105337	UGAAAUG	ENSMUST00000088419.13|Mbnl2|ENSMUSG00000022139.18|muscleblind like splicing factor 2
mm39_v1_chr4_-_101122433_101122479	0.0935516	UGAAAUG	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr13_-_25015392_25015500	0.0930066	UGAAAUG	ENSMUST00000006900.7|Acot13|ENSMUSG00000006717.8|acyl-CoA thioesterase 13
mm39_v1_chr2_-_168072295_168072304	0.0853617	UGAAAUG	ENSMUST00000154111.8|Dpm1|ENSMUSG00000078919.11|dolichol-phosphate (beta-D) mannosyltransferase 1
mm39_v1_chr12_-_35584968_35585059	0.0797817	UGAAAUG	ENSMUST00000116436.9|Ahr|ENSMUSG00000019256.18|aryl-hydrocarbon receptor
mm39_v1_chr7_+_127344942_127344999	0.0774105	UGAAAUG	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr1_+_85992341_85992370	0.0723893	UGAAAUG	ENSMUST00000027432.9|Psmd1|ENSMUSG00000026229.18|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm39_v1_chr2_+_133394079_133394157	0.0720264	UGAAAUG	ENSMUST00000028836.7|Bmp2|ENSMUSG00000027358.7|bone morphogenetic protein 2
mm39_v1_chrX_-_17438520_17438564	0.0700183	UGAAAUG	ENSMUST00000026016.13|Fundc1|ENSMUSG00000025040.14|FUN14 domain containing 1
mm39_v1_chr13_-_64422693_64422761	0.0641748	UGAAAUG	ENSMUST00000109770.2|Cdc14b|ENSMUSG00000033102.16|CDC14 cell division cycle 14B
mm39_v1_chr12_+_51424343_51424371	0.0636327	UGAAAUG	ENSMUST00000219434.2|Scfd1|ENSMUSG00000020952.11|Sec1 family domain containing 1	ENSMUST00000021335.7|Scfd1|ENSMUSG00000020952.11|Sec1 family domain containing 1
mm39_v1_chr6_+_14901343_14901363	0.0628428	UGAAAUG	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr19_-_12773472_12773510	0.0573446	UGAAAUG	ENSMUST00000038627.9|Zfp91|ENSMUSG00000024695.17|zinc finger protein 91
mm39_v1_chr12_+_87194476_87194558	0.0452709	UGAAAUG	ENSMUST00000063117.10|Gstz1|ENSMUSG00000021033.12|glutathione transferase zeta 1 (maleylacetoacetate isomerase)	ENSMUST00000220574.2|Gstz1|ENSMUSG00000021033.12|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm39_v1_chr1_-_60605867_60605938	0.0442459	UGAAAUG	ENSMUST00000027168.12|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000090293.11|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000140485.8|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm39_v1_chr15_-_96597610_96597617	0.0434184	UGAAAUG	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr13_-_41373870_41373889	0.0400413	UGAAAUG	ENSMUST00000021793.15|Elovl2|ENSMUSG00000021364.17|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm39_v1_chr6_+_92068361_92068371	0.0330307	UGAAAUG	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr1_-_72914036_72914050	0.0320027	UGAAAUG	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr14_+_76741918_76741970	0.0237413	UGAAAUG	ENSMUST00000022587.10|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1	ENSMUST00000134109.2|Tsc22d1|ENSMUSG00000022010.20|TSC22 domain family, member 1
mm39_v1_chr14_+_26959975_26960003	0.0192922	UGAAAUG	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr1_+_150269001_150269016	0.0111131	UGAAAUG	ENSMUST00000119161.9|Tpr|ENSMUSG00000006005.19|translocated promoter region, nuclear basket protein
mm39_v1_chr8_+_18896267_18896344	0.00837124	UGAAAUG	ENSMUST00000149565.8|Agpat5|ENSMUSG00000031467.11|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	ENSMUST00000033847.5|Agpat5|ENSMUSG00000031467.11|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm39_v1_chr10_-_121422635_121422708	0.008255	UGAAAUG	ENSMUST00000219493.2|Tbk1|ENSMUSG00000020115.4|TANK-binding kinase 1	ENSMUST00000020316.4|Tbk1|ENSMUSG00000020115.4|TANK-binding kinase 1
mm39_v1_chr5_-_76452365_76452398	0.00371503	UGAAAUG	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr5_-_5799315_5799340	0.000341935	UGAAAUG	ENSMUST00000015796.9|Steap1|ENSMUSG00000015652.10|six transmembrane epithelial antigen of the prostate 1
