mm39_v1_chr13_-_37234213_37234249	0.327315	UGACCUA	ENSMUST00000164727.8|F13a1|ENSMUSG00000039109.18|coagulation factor XIII, A1 subunit
mm39_v1_chr12_-_26506422_26506451	0.286593	UGACCUA	ENSMUST00000020970.10|Rsad2|ENSMUSG00000020641.17|radical S-adenosyl methionine domain containing 2
mm39_v1_chrX_+_95139639_95139662	0.272505	UGACCUA	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr4_+_123176570_123176704	0.252973	UGACCUA	ENSMUST00000106243.8|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4	ENSMUST00000106241.8|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4	ENSMUST00000080178.13|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4
mm39_v1_chr10_+_87695117_87695128	0.24376	UGACCUA	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr13_+_111822712_111822745	0.20513	UGACCUA	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr5_-_136596299_136596390	0.190934	UGACCUA	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr5_+_73808718_73808737	0.185767	UGACCUA	ENSMUST00000071077.14|Spata18|ENSMUSG00000029155.17|spermatogenesis associated 18
mm39_v1_chrX_-_163041185_163041195	0.180453	UGACCUA	ENSMUST00000112265.9|Bmx|ENSMUSG00000031377.12|BMX non-receptor tyrosine kinase
mm39_v1_chrX_+_105964224_105964239	0.168487	UGACCUA	ENSMUST00000060576.8|Lpar4|ENSMUSG00000049929.8|lysophosphatidic acid receptor 4
mm39_v1_chr2_+_27776428_27776452	0.162822	UGACCUA	ENSMUST00000028280.14|Col5a1|ENSMUSG00000026837.17|collagen, type V, alpha 1
mm39_v1_chr4_-_96673423_96673423	0.159761	UGACCUA	ENSMUST00000107071.2|Gm12695|ENSMUSG00000078639.2|predicted gene 12695
mm39_v1_chr1_-_54965470_54965561	0.154818	UGACCUA	ENSMUST00000179030.8|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44	ENSMUST00000044359.16|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44
mm39_v1_chr19_+_27194757_27194825	0.152172	UGACCUA	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr3_-_27764571_27764616	0.145645	UGACCUA	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr4_+_8691303_8691381	0.137152	UGACCUA	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr2_-_45003270_45003296	0.134919	UGACCUA	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr9_-_56835633_56835676	0.134318	UGACCUA	ENSMUST00000050916.7|Snx33|ENSMUSG00000032733.7|sorting nexin 33
mm39_v1_chr19_-_41790458_41790499	0.133504	UGACCUA	ENSMUST00000026150.15|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000163265.9|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000177495.2|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19
mm39_v1_chr11_+_98798627_98798692	0.131338	UGACCUA	ENSMUST00000092706.13|Cdc6|ENSMUSG00000017499.16|cell division cycle 6
mm39_v1_chr6_+_100681670_100681721	0.129997	UGACCUA	ENSMUST00000032157.9|Gxylt2|ENSMUSG00000030074.10|glucoside xylosyltransferase 2
mm39_v1_chr7_+_49559859_49559894	0.127642	UGACCUA	ENSMUST00000056442.12|Slc6a5|ENSMUSG00000039728.16|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm39_v1_chr1_-_135032972_135033014	0.126101	UGACCUA	ENSMUST00000044828.14|Lgr6|ENSMUSG00000042793.14|leucine-rich repeat-containing G protein-coupled receptor 6
mm39_v1_chr10_-_31485180_31485180	0.124787	UGACCUA	ENSMUST00000081989.8|Rnf217|ENSMUSG00000063760.10|ring finger protein 217
mm39_v1_chr2_-_33321306_33321359	0.121871	UGACCUA	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr12_+_24881582_24881657	0.117525	UGACCUA	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr10_-_53252210_53252261	0.110888	UGACCUA	ENSMUST00000095691.7|Cep85l|ENSMUSG00000038594.10|centrosomal protein 85-like
mm39_v1_chr15_-_8473918_8473991	0.109355	UGACCUA	ENSMUST00000052965.8|Nipbl|ENSMUSG00000022141.8|NIPBL cohesin loading factor
mm39_v1_chr1_-_151965876_151965918	0.104228	UGACCUA	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr2_-_178056251_178056300	0.10387	UGACCUA	ENSMUST00000058678.5|Ppp1r3d|ENSMUSG00000049999.5|protein phosphatase 1, regulatory subunit 3D
mm39_v1_chr6_+_145156860_145156933	0.10113	UGACCUA	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chrX_+_23559282_23559357	0.0947839	UGACCUA	ENSMUST00000035766.13|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44	ENSMUST00000101670.3|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44
mm39_v1_chr9_+_35332837_35332913	0.0940624	UGACCUA	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr2_+_162773440_162773581	0.0934103	UGACCUA	ENSMUST00000130411.7|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6	ENSMUST00000126163.3|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6
mm39_v1_chr6_-_120015608_120015660	0.0908935	UGACCUA	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr6_-_97594498_97594558	0.0884375	UGACCUA	ENSMUST00000113355.9|Frmd4b|ENSMUSG00000030064.17|FERM domain containing 4B
mm39_v1_chr9_-_44145280_44145300	0.0839966	UGACCUA	ENSMUST00000205968.2|Cbl|ENSMUSG00000034342.10|Casitas B-lineage lymphoma	ENSMUST00000206147.2|Cbl|ENSMUSG00000034342.10|Casitas B-lineage lymphoma	ENSMUST00000037644.8|Cbl|ENSMUSG00000034342.10|Casitas B-lineage lymphoma
mm39_v1_chr1_+_60219724_60219797	0.0805128	UGACCUA	ENSMUST00000160834.8|Nbeal1|ENSMUSG00000073664.12|neurobeachin like 1
mm39_v1_chr10_-_10348058_10348149	0.0780532	UGACCUA	ENSMUST00000179956.8|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000208717.2|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000172530.8|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000132573.2|Adgb|ENSMUSG00000050994.21|androglobin
mm39_v1_chr5_+_91222470_91222487	0.076301	UGACCUA	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr18_-_38068456_38068529	0.0736138	UGACCUA	ENSMUST00000080033.7|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1	ENSMUST00000115631.8|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1	ENSMUST00000115634.8|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1
mm39_v1_chr10_+_19232281_19232312	0.0630846	UGACCUA	ENSMUST00000053225.7|Olig3|ENSMUSG00000045591.7|oligodendrocyte transcription factor 3
mm39_v1_chr5_+_32616187_32616312	0.0626793	UGACCUA	ENSMUST00000015100.15|Ppp1cb|ENSMUSG00000014956.16|protein phosphatase 1 catalytic subunit beta
mm39_v1_chr15_+_6737853_6737883	0.0624042	UGACCUA	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chrX_-_94488394_94488478	0.0588913	UGACCUA	ENSMUST00000084535.6|Amer1|ENSMUSG00000050332.8|APC membrane recruitment 1
mm39_v1_chr16_+_35803674_35803765	0.056672	UGACCUA	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr10_-_39009844_39009908	0.0533582	UGACCUA	ENSMUST00000134279.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000139743.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000149949.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000124941.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000125042.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000063204.9|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr6_+_65019574_65019651	0.0491813	UGACCUA	ENSMUST00000031984.9|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	ENSMUST00000205118.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chr3_-_69034425_69034446	0.0423699	UGACCUA	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr5_+_72805122_72805144	0.0414934	UGACCUA	ENSMUST00000087212.8|Nipal1|ENSMUSG00000067219.10|NIPA-like domain containing 1
mm39_v1_chr16_+_91855158_91855216	0.0412859	UGACCUA	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr5_+_107745562_107745601	0.0410758	UGACCUA	ENSMUST00000112651.8|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2	ENSMUST00000112654.8|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2	ENSMUST00000065422.12|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2
mm39_v1_chr1_-_131066004_131066077	0.0383972	UGACCUA	ENSMUST00000016670.9|Dyrk3|ENSMUSG00000016526.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
mm39_v1_chr15_-_35155896_35155959	0.0351638	UGACCUA	ENSMUST00000067033.8|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3	ENSMUST00000018476.14|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3
mm39_v1_chr4_+_83443777_83443851	0.0318506	UGACCUA	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr9_-_50657800_50657848	0.024719	UGACCUA	ENSMUST00000239417.2|2310030G06Rik|ENSMUSG00000032062.4|RIKEN cDNA 2310030G06 gene	ENSMUST00000034564.4|2310030G06Rik|ENSMUSG00000032062.4|RIKEN cDNA 2310030G06 gene
mm39_v1_chr3_+_116306719_116306793	0.0220817	UGACCUA	ENSMUST00000000349.11|Dbt|ENSMUSG00000000340.11|dihydrolipoamide branched chain transacylase E2	ENSMUST00000197201.5|Dbt|ENSMUSG00000000340.11|dihydrolipoamide branched chain transacylase E2
mm39_v1_chr2_+_69652714_69652855	0.0168457	UGACCUA	ENSMUST00000053087.4|Klhl23|ENSMUSG00000042155.4|kelch-like 23
mm39_v1_chr3_-_41037427_41037481	0.0153235	UGACCUA	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr5_+_88702307_88702357	0.0146986	UGACCUA	ENSMUST00000090413.6|Utp3|ENSMUSG00000070697.5|UTP3 small subunit processome component
mm39_v1_chrX_-_47123719_47123736	0.00925537	UGACCUA	ENSMUST00000039026.8|Apln|ENSMUSG00000037010.8|apelin
mm39_v1_chr1_-_10302895_10302895	0.00783379	UGACCUA	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr14_-_73563212_73563276	0.00688282	UGACCUA	ENSMUST00000022701.7|Rb1|ENSMUSG00000022105.7|RB transcriptional corepressor 1
