mm39_v1_chr2_+_136555364_136555412	10.1438	UGCAUAG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr2_-_110781268_110781268	7.51454	UGCAUAG	ENSMUST00000099623.10|Ano3|ENSMUSG00000074968.12|anoctamin 3
mm39_v1_chr16_-_45544960_45544982	6.87226	UGCAUAG	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chr19_-_45804446_45804515	6.65767	UGCAUAG	ENSMUST00000079431.10|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2	ENSMUST00000026247.13|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2	ENSMUST00000162528.9|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2
mm39_v1_chr16_-_67417768_67417810	6.65201	UGCAUAG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr7_-_127423641_127423751	6.49379	UGCAUAG	ENSMUST00000106267.5|Stx1b|ENSMUSG00000030806.7|syntaxin 1B
mm39_v1_chr2_+_21372338_21372353	6.33606	UGCAUAG	ENSMUST00000055946.8|Gpr158|ENSMUSG00000045967.12|G protein-coupled receptor 158
mm39_v1_chr17_-_45860580_45860603	6.17641	UGCAUAG	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr11_-_98220466_98220482	5.7314	UGCAUAG	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr1_-_77491683_77491779	5.68403	UGCAUAG	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chr8_+_14145848_14145931	5.62322	UGCAUAG	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr12_+_52746158_52746186	5.60951	UGCAUAG	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr13_-_12121831_12121871	5.57142	UGCAUAG	ENSMUST00000021750.15|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000170156.3|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000220597.2|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac
mm39_v1_chr4_-_91260265_91260306	5.5486	UGCAUAG	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr2_-_24653059_24653164	5.43504	UGCAUAG	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr16_-_60425608_60425616	5.41346	UGCAUAG	ENSMUST00000068860.13|Epha6|ENSMUSG00000055540.16|Eph receptor A6
mm39_v1_chr3_-_89230190_89230272	5.15402	UGCAUAG	ENSMUST00000200436.2|Efna3|ENSMUSG00000028039.12|ephrin A3	ENSMUST00000029673.10|Efna3|ENSMUSG00000028039.12|ephrin A3
mm39_v1_chr3_+_8574420_8574620	5.03544	UGCAUAG	ENSMUST00000029002.9|Stmn2|ENSMUSG00000027500.11|stathmin-like 2
mm39_v1_chr1_-_173195236_173195261	5.0164	UGCAUAG	ENSMUST00000005470.5|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3	ENSMUST00000111220.8|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3
mm39_v1_chr4_-_110144676_110144731	4.95483	UGCAUAG	ENSMUST00000106598.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000102723.11|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000153906.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chr6_-_126621751_126621768	4.72545	UGCAUAG	ENSMUST00000055168.5|Kcna1|ENSMUSG00000047976.5|potassium voltage-gated channel, shaker-related subfamily, member 1
mm39_v1_chr6_-_126717590_126717644	4.65213	UGCAUAG	ENSMUST00000185333.2|Kcna6|ENSMUSG00000038077.8|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm39_v1_chr11_-_46203047_46203185	4.43559	UGCAUAG	ENSMUST00000129474.2|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2	ENSMUST00000093166.11|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2	ENSMUST00000165599.9|Cyfip2|ENSMUSG00000020340.17|cytoplasmic FMR1 interacting protein 2
mm39_v1_chr13_-_58261406_58261469	4.31511	UGCAUAG	ENSMUST00000160860.9|Klhl3|ENSMUSG00000014164.16|kelch-like 3
mm39_v1_chr13_-_14697770_14697811	4.29602	UGCAUAG	ENSMUST00000110516.3|Hecw1|ENSMUSG00000021301.10|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm39_v1_chr6_-_91784405_91784437	4.06221	UGCAUAG	ENSMUST00000162300.8|Grip2|ENSMUSG00000030098.16|glutamate receptor interacting protein 2
mm39_v1_chr9_-_108067552_108067617	3.92049	UGCAUAG	ENSMUST00000035208.14|Bsn|ENSMUSG00000032589.15|bassoon
mm39_v1_chr10_-_5872386_5872405	3.88333	UGCAUAG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr9_-_42855775_42855806	3.85809	UGCAUAG	ENSMUST00000114865.8|Grik4|ENSMUSG00000032017.15|glutamate receptor, ionotropic, kainate 4
mm39_v1_chr5_-_131645437_131645450	3.64111	UGCAUAG	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr13_+_19132375_19132587	3.56229	UGCAUAG	ENSMUST00000239207.2|Amph|ENSMUSG00000021314.14|amphiphysin	ENSMUST00000003345.10|Amph|ENSMUSG00000021314.14|amphiphysin	ENSMUST00000200466.5|Amph|ENSMUSG00000021314.14|amphiphysin
mm39_v1_chr2_+_134627987_134628090	3.55156	UGCAUAG	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr18_+_34354031_34354073	3.49551	UGCAUAG	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr15_-_66158445_66158509	3.47329	UGCAUAG	ENSMUST00000070256.9|Kcnq3|ENSMUSG00000056258.10|potassium voltage-gated channel, subfamily Q, member 3
mm39_v1_chr17_+_44114894_44114932	3.45744	UGCAUAG	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr2_+_107120934_107121005	3.43174	UGCAUAG	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr5_-_122917341_122917496	3.29327	UGCAUAG	ENSMUST00000198257.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000199599.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000196742.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000200109.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000111668.8|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm39_v1_chr5_+_57876401_57876457	3.22953	UGCAUAG	ENSMUST00000094783.7|Pcdh7|ENSMUSG00000029108.15|protocadherin 7
mm39_v1_chr5_+_27109679_27109709	3.21556	UGCAUAG	ENSMUST00000120555.8|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr7_+_90739904_90739959	3.18209	UGCAUAG	ENSMUST00000107196.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000074273.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chrX_+_65692924_65693001	3.16399	UGCAUAG	ENSMUST00000166241.2|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr2_+_102488985_102489014	3.10276	UGCAUAG	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr15_-_71599664_71599697	3.0859	UGCAUAG	ENSMUST00000022953.10|Fam135b|ENSMUSG00000036800.9|family with sequence similarity 135, member B
mm39_v1_chr3_+_54063459_54063525	3.00794	UGCAUAG	ENSMUST00000029311.11|Trpc4|ENSMUSG00000027748.12|transient receptor potential cation channel, subfamily C, member 4	ENSMUST00000200048.5|Trpc4|ENSMUSG00000027748.12|transient receptor potential cation channel, subfamily C, member 4
mm39_v1_chr3_+_107008867_107008883	3.00429	UGCAUAG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr3_+_136375839_136375948	2.96228	UGCAUAG	ENSMUST00000070198.14|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr1_+_63485002_63485102	2.95689	UGCAUAG	ENSMUST00000087374.10|Adam23|ENSMUSG00000025964.16|a disintegrin and metallopeptidase domain 23
mm39_v1_chr2_-_17735847_17735898	2.94325	UGCAUAG	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr18_-_31580436_31580460	2.89557	UGCAUAG	ENSMUST00000025110.5|Syt4|ENSMUSG00000024261.7|synaptotagmin IV
mm39_v1_chr2_+_73102269_73102283	2.76299	UGCAUAG	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr2_-_79287095_79287102	2.76106	UGCAUAG	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr2_-_52566583_52566601	2.73926	UGCAUAG	ENSMUST00000178799.8|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit
mm39_v1_chr3_+_61269059_61269059	2.72193	UGCAUAG	ENSMUST00000049064.4|Rap2b|ENSMUSG00000036894.4|RAP2B, member of RAS oncogene family
mm39_v1_chr10_-_108846816_108846844	2.71652	UGCAUAG	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr5_+_130477642_130477671	2.70413	UGCAUAG	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr14_-_80008745_80008758	2.70336	UGCAUAG	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr5_-_49682150_49682249	2.6905	UGCAUAG	ENSMUST00000087395.11|Kcnip4|ENSMUSG00000029088.17|Kv channel interacting protein 4
mm39_v1_chr6_-_60806810_60806839	2.68101	UGCAUAG	ENSMUST00000163779.8|Snca|ENSMUSG00000025889.14|synuclein, alpha
mm39_v1_chr13_-_105191403_105191438	2.65461	UGCAUAG	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr9_+_95441652_95441710	2.58794	UGCAUAG	ENSMUST00000079597.7|Paqr9|ENSMUSG00000064225.7|progestin and adipoQ receptor family member IX
mm39_v1_chr8_-_26275182_26275315	2.56832	UGCAUAG	ENSMUST00000038498.10|Bag4|ENSMUSG00000037316.10|BCL2-associated athanogene 4
mm39_v1_chr18_+_37130860_37130933	2.54397	UGCAUAG	ENSMUST00000115659.6|Pcdha9|ENSMUSG00000103770.2|protocadherin alpha 9
mm39_v1_chr12_-_67269323_67269354	2.54078	UGCAUAG	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr6_-_55658242_55658255	2.52988	UGCAUAG	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr14_-_65499835_65499941	2.523	UGCAUAG	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr16_+_80997580_80997629	2.48274	UGCAUAG	ENSMUST00000037785.14|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2	ENSMUST00000067602.5|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2
mm39_v1_chr18_-_72484126_72484140	2.43622	UGCAUAG	ENSMUST00000114943.11|Dcc|ENSMUSG00000060534.17|deleted in colorectal carcinoma
mm39_v1_chr9_-_42035560_42035631	2.42063	UGCAUAG	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr4_+_155976279_155976351	2.4189	UGCAUAG	ENSMUST00000105584.10|Acap3|ENSMUSG00000029033.17|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	ENSMUST00000079031.6|Acap3|ENSMUSG00000029033.17|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm39_v1_chr2_-_73722874_73722900	2.40055	UGCAUAG	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr2_-_113047397_113047439	2.33435	UGCAUAG	ENSMUST00000080673.13|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3	ENSMUST00000208151.2|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3	ENSMUST00000208290.2|Ryr3|ENSMUSG00000057378.16|ryanodine receptor 3
mm39_v1_chr5_+_30868908_30868932	2.3011	UGCAUAG	ENSMUST00000114729.8|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr18_+_37858753_37858810	2.27468	UGCAUAG	ENSMUST00000066149.9|Pcdhga8|ENSMUSG00000103897.2|protocadherin gamma subfamily A, 8
mm39_v1_chr1_+_34840785_34840875	2.26597	UGCAUAG	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chr16_-_64926076_64926217	2.24614	UGCAUAG	ENSMUST00000063076.6|Htr1f|ENSMUSG00000050783.6|5-hydroxytryptamine (serotonin) receptor 1F
mm39_v1_chr9_+_58536386_58536393	2.22624	UGCAUAG	ENSMUST00000176250.2|Nptn|ENSMUSG00000032336.18|neuroplastin
mm39_v1_chr5_-_122187884_122187947	2.19445	UGCAUAG	ENSMUST00000111752.10|Cux2|ENSMUSG00000042589.19|cut-like homeobox 2
mm39_v1_chr8_+_61085890_61085952	2.17527	UGCAUAG	ENSMUST00000160719.8|Mfap3l|ENSMUSG00000031647.11|microfibrillar-associated protein 3-like
mm39_v1_chr2_-_5719302_5719349	2.10784	UGCAUAG	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chrX_+_92698469_92698587	2.08853	UGCAUAG	ENSMUST00000113933.9|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr11_+_97306353_97306402	2.07439	UGCAUAG	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr8_-_70892204_70892261	2.05445	UGCAUAG	ENSMUST00000076615.6|Crtc1|ENSMUSG00000003575.14|CREB regulated transcription coactivator 1
mm39_v1_chr1_+_42734889_42734937	2.04758	UGCAUAG	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr10_-_86334700_86334730	1.98351	UGCAUAG	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr6_+_36364990_36365019	1.97165	UGCAUAG	ENSMUST00000172278.8|Chrm2|ENSMUSG00000045613.10|cholinergic receptor, muscarinic 2, cardiac
mm39_v1_chr1_-_16689660_16689713	1.94407	UGCAUAG	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr2_+_151923449_151923544	1.93568	UGCAUAG	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr1_+_5658716_5658780	1.91703	UGCAUAG	ENSMUST00000160777.8|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000239100.2|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000027038.11|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1
mm39_v1_chr13_+_41403317_41403340	1.91531	UGCAUAG	ENSMUST00000165561.4|Smim13|ENSMUSG00000091264.4|small integral membrane protein 13
mm39_v1_chr10_-_121146940_121147094	1.88586	UGCAUAG	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr2_-_167032068_167032093	1.87085	UGCAUAG	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr9_-_54408780_54408928	1.84121	UGCAUAG	ENSMUST00000118600.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2	ENSMUST00000118163.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2
mm39_v1_chr17_-_88105422_88105476	1.76072	UGCAUAG	ENSMUST00000055221.9|Kcnk12|ENSMUSG00000050138.9|potassium channel, subfamily K, member 12
mm39_v1_chr13_+_83652352_83652374	1.75585	UGCAUAG	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr15_-_96540760_96540865	1.73512	UGCAUAG	ENSMUST00000088452.11|Slc38a1|ENSMUSG00000023169.16|solute carrier family 38, member 1
mm39_v1_chr1_-_16589511_16589560	1.72289	UGCAUAG	ENSMUST00000162751.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000027052.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000149320.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr4_+_129823042_129823042	1.72034	UGCAUAG	ENSMUST00000084263.6|Spocd1|ENSMUSG00000028784.15|SPOC domain containing 1
mm39_v1_chr11_-_86648309_86648399	1.68775	UGCAUAG	ENSMUST00000060766.16|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)	ENSMUST00000103186.11|Cltc|ENSMUSG00000047126.18|clathrin, heavy polypeptide (Hc)
mm39_v1_chr7_+_109617456_109617481	1.67653	UGCAUAG	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr7_-_137999434_137999516	1.66679	UGCAUAG	ENSMUST00000160436.2|Tcerg1l|ENSMUSG00000091002.3|transcription elongation regulator 1-like
mm39_v1_chr9_-_16289527_16289527	1.6531	UGCAUAG	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr3_+_141170941_141170983	1.61166	UGCAUAG	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr7_-_121306476_121306685	1.60453	UGCAUAG	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr12_+_64964674_64964776	1.57986	UGCAUAG	ENSMUST00000058135.6|Gm527|ENSMUSG00000047227.6|predicted gene 527	ENSMUST00000220993.2|Gm527|ENSMUSG00000047227.6|predicted gene 527
mm39_v1_chr2_+_106523532_106523624	1.55977	UGCAUAG	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr13_+_16189041_16189060	1.52698	UGCAUAG	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr5_+_89034666_89034684	1.50926	UGCAUAG	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr7_-_63588610_63588704	1.50194	UGCAUAG	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr3_+_55149947_55149976	1.49315	UGCAUAG	ENSMUST00000167204.8|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1	ENSMUST00000054237.14|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1
mm39_v1_chr14_-_14255588_14255638	1.4862	UGCAUAG	ENSMUST00000022272.14|Kctd6|ENSMUSG00000021752.15|potassium channel tetramerisation domain containing 6
mm39_v1_chr4_-_108637979_108638000	1.43442	UGCAUAG	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr16_-_74208180_74208314	1.41901	UGCAUAG	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr19_+_30007910_30007928	1.38482	UGCAUAG	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr9_+_57818243_57818334	1.37336	UGCAUAG	ENSMUST00000216925.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000163329.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000213654.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000217132.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000216841.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)	ENSMUST00000214086.2|Ubl7|ENSMUSG00000055720.11|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm39_v1_chr12_+_95658987_95659011	1.36536	UGCAUAG	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr15_-_39807081_39807200	1.35702	UGCAUAG	ENSMUST00000022916.13|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chrX_+_67722147_67722159	1.35289	UGCAUAG	ENSMUST00000088546.12|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr12_-_75224099_75224133	1.33736	UGCAUAG	ENSMUST00000042299.4|Kcnh5|ENSMUSG00000034402.4|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm39_v1_chr17_-_66826661_66826724	1.33095	UGCAUAG	ENSMUST00000167962.2|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family	ENSMUST00000070538.12|Rab12|ENSMUSG00000023460.14|RAB12, member RAS oncogene family
mm39_v1_chr12_-_4788415_4788444	1.32885	UGCAUAG	ENSMUST00000111154.4|Fam228a|ENSMUSG00000079177.5|family with sequence similarity 228, member A
mm39_v1_chr19_+_18690556_18690576	1.3271	UGCAUAG	ENSMUST00000062753.3|D030056L22Rik|ENSMUSG00000047044.8|RIKEN cDNA D030056L22 gene
mm39_v1_chr1_-_3741721_3741721	1.31424	UGCAUAG	ENSMUST00000070533.5|Xkr4|ENSMUSG00000051951.6|X-linked Kx blood group related 4
mm39_v1_chr5_-_106844685_106844707	1.30392	UGCAUAG	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr12_+_111132779_111132832	1.27032	UGCAUAG	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr2_-_63014622_63014681	1.18422	UGCAUAG	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr7_+_126446588_126446931	1.18072	UGCAUAG	ENSMUST00000141805.8|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000064110.14|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000205938.2|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000152051.8|Doc2a|ENSMUSG00000052301.15|double C2, alpha
mm39_v1_chr1_-_16727067_16727121	1.17214	UGCAUAG	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr1_-_133728779_133728805	1.16992	UGCAUAG	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chrX_+_135608725_135608789	1.16627	UGCAUAG	ENSMUST00000055104.6|Tceal1|ENSMUSG00000049536.6|transcription elongation factor A (SII)-like 1
mm39_v1_chr10_-_22607136_22607346	1.15259	UGCAUAG	ENSMUST00000238910.2|ENSMUSG00000118528.2|ENSMUSG00000118528.2|novel protein	ENSMUST00000127698.8|Tbpl1|ENSMUSG00000071359.14|TATA box binding protein-like 1
mm39_v1_chr17_-_52139693_52139706	1.14975	UGCAUAG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr12_-_100691251_100691287	1.14461	UGCAUAG	ENSMUST00000043599.7|Rps6ka5|ENSMUSG00000021180.10|ribosomal protein S6 kinase, polypeptide 5
mm39_v1_chr18_-_77652820_77652858	1.1323	UGCAUAG	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr7_+_100355798_100355909	1.12264	UGCAUAG	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr4_-_122779837_122779861	1.08014	UGCAUAG	ENSMUST00000106255.8|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)	ENSMUST00000106257.10|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)
mm39_v1_chr3_-_69767208_69767273	1.06422	UGCAUAG	ENSMUST00000171529.4|Sptssb|ENSMUSG00000043461.14|serine palmitoyltransferase, small subunit B	ENSMUST00000051239.13|Sptssb|ENSMUSG00000043461.14|serine palmitoyltransferase, small subunit B
mm39_v1_chr11_-_115590318_115590360	1.05046	UGCAUAG	ENSMUST00000106497.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr12_-_27392356_27392573	1.05011	UGCAUAG	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr11_+_117545618_117545655	1.01965	UGCAUAG	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr7_+_48896560_48896592	1.0118	UGCAUAG	ENSMUST00000184945.8|Nav2|ENSMUSG00000052512.18|neuron navigator 2
mm39_v1_chr11_+_102175757_102175857	1.01097	UGCAUAG	ENSMUST00000036376.13|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2	ENSMUST00000100387.11|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr2_-_65397809_65397839	1.00883	UGCAUAG	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
mm39_v1_chr10_-_125164399_125164410	0.992938	UGCAUAG	ENSMUST00000063318.10|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr2_-_6889783_6889807	0.979383	UGCAUAG	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr18_-_21433186_21433226	0.970767	UGCAUAG	ENSMUST00000049260.7|Garem1|ENSMUSG00000042680.9|GRB2 associated regulator of MAPK1 subtype 1
mm39_v1_chr9_-_54467419_54467509	0.967128	UGCAUAG	ENSMUST00000041901.7|Cib2|ENSMUSG00000037493.7|calcium and integrin binding family member 2
mm39_v1_chr14_-_25769457_25769513	0.965216	UGCAUAG	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr5_+_34731008_34731081	0.955993	UGCAUAG	ENSMUST00000114338.9|Add1|ENSMUSG00000029106.15|adducin 1 (alpha)
mm39_v1_chr10_-_59787646_59787663	0.94862	UGCAUAG	ENSMUST00000020308.5|Ddit4|ENSMUSG00000020108.5|DNA-damage-inducible transcript 4
mm39_v1_chr5_+_43390513_43390580	0.942231	UGCAUAG	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr6_+_108190050_108190065	0.922748	UGCAUAG	ENSMUST00000032192.9|Itpr1|ENSMUSG00000030102.12|inositol 1,4,5-trisphosphate receptor 1
mm39_v1_chr8_-_61436249_61436353	0.915593	UGCAUAG	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr2_-_166904902_166904967	0.913223	UGCAUAG	ENSMUST00000048988.14|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr5_-_110596352_110596385	0.910507	UGCAUAG	ENSMUST00000069483.12|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1	ENSMUST00000200293.2|Fbrsl1|ENSMUSG00000043323.18|fibrosin-like 1
mm39_v1_chr3_+_34074048_34074092	0.909707	UGCAUAG	ENSMUST00000001620.13|Fxr1|ENSMUSG00000027680.16|fragile X mental retardation gene 1, autosomal homolog
mm39_v1_chr5_-_140634773_140634807	0.887916	UGCAUAG	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr1_-_43866910_43866960	0.859976	UGCAUAG	ENSMUST00000153317.6|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000128261.2|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000126008.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000139451.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1
mm39_v1_chrX_+_81992467_81992521	0.826973	UGCAUAG	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr19_-_59932079_59932110	0.820616	UGCAUAG	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr8_-_110464345_110464418	0.812146	UGCAUAG	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chr12_-_46865709_46865720	0.805681	UGCAUAG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr4_+_139302009_139302036	0.805032	UGCAUAG	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr11_+_75084609_75084691	0.797852	UGCAUAG	ENSMUST00000102514.4|Rtn4rl1|ENSMUSG00000045287.7|reticulon 4 receptor-like 1
mm39_v1_chr9_+_59485475_59485620	0.784403	UGCAUAG	ENSMUST00000118549.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000034840.10|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr4_-_135161044_135161180	0.778359	UGCAUAG	ENSMUST00000156635.2|Rcan3|ENSMUSG00000059713.13|regulator of calcineurin 3	ENSMUST00000030606.14|Rcan3|ENSMUSG00000059713.13|regulator of calcineurin 3
mm39_v1_chr4_+_13743424_13743478	0.775251	UGCAUAG	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr14_+_30547541_30547595	0.760164	UGCAUAG	ENSMUST00000006701.8|Stimate|ENSMUSG00000006526.14|STIM activating enhancer
mm39_v1_chr11_+_29642937_29643001	0.755644	UGCAUAG	ENSMUST00000102843.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000102842.10|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000078830.11|Rtn4|ENSMUSG00000020458.17|reticulon 4	ENSMUST00000170731.8|Rtn4|ENSMUSG00000020458.17|reticulon 4
mm39_v1_chr7_+_121666388_121666438	0.745432	UGCAUAG	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr3_+_28317354_28317364	0.744496	UGCAUAG	ENSMUST00000159236.9|Tnik|ENSMUSG00000027692.17|TRAF2 and NCK interacting kinase
mm39_v1_chr9_-_57375269_57375357	0.743905	UGCAUAG	ENSMUST00000215059.2|Scamp5|ENSMUSG00000040722.8|secretory carrier membrane protein 5	ENSMUST00000046587.8|Scamp5|ENSMUSG00000040722.8|secretory carrier membrane protein 5	ENSMUST00000214256.2|Scamp5|ENSMUSG00000040722.8|secretory carrier membrane protein 5
mm39_v1_chr1_-_190711151_190711199	0.727735	UGCAUAG	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chr1_-_58544105_58544268	0.720289	UGCAUAG	ENSMUST00000191206.2|Orc2|ENSMUSG00000026037.15|origin recognition complex, subunit 2	ENSMUST00000027198.12|Orc2|ENSMUSG00000026037.15|origin recognition complex, subunit 2
mm39_v1_chr5_-_69749617_69749683	0.71436	UGCAUAG	ENSMUST00000173927.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000120789.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000031117.13|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2
mm39_v1_chr4_+_32657105_32657167	0.71411	UGCAUAG	ENSMUST00000071642.11|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1	ENSMUST00000178134.2|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1
mm39_v1_chrX_+_7688528_7688528	0.712511	UGCAUAG	ENSMUST00000009875.5|Kcnd1|ENSMUSG00000009731.5|potassium voltage-gated channel, Shal-related family, member 1
mm39_v1_chr4_+_53631460_53631574	0.685343	UGCAUAG	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chrY_-_1245685_1245770	0.674878	UGCAUAG	ENSMUST00000143286.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000137048.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000069309.14|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000139365.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked	ENSMUST00000154004.8|Uty|ENSMUSG00000068457.15|ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
mm39_v1_chr15_+_101071948_101072029	0.673291	UGCAUAG	ENSMUST00000000544.12|Acvr1b|ENSMUSG00000000532.12|activin A receptor, type 1B
mm39_v1_chr11_+_93776965_93777045	0.663707	UGCAUAG	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr7_+_118454957_118455024	0.655831	UGCAUAG	ENSMUST00000208658.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000098087.9|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000106547.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K
mm39_v1_chr8_+_77626400_77626456	0.642453	UGCAUAG	ENSMUST00000109913.9|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr19_-_10282218_10282318	0.620541	UGCAUAG	ENSMUST00000039327.11|Dagla|ENSMUSG00000035735.11|diacylglycerol lipase, alpha
mm39_v1_chr6_-_86710250_86710377	0.601326	UGCAUAG	ENSMUST00000001185.14|Gmcl1|ENSMUSG00000001157.14|germ cell-less, spermatogenesis associated 1
mm39_v1_chr9_+_70586232_70586292	0.596214	UGCAUAG	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr10_-_119075910_119076002	0.571521	UGCAUAG	ENSMUST00000020315.13|Cand1|ENSMUSG00000020114.13|cullin associated and neddylation disassociated 1
mm39_v1_chr13_+_13764982_13765058	0.570593	UGCAUAG	ENSMUST00000110559.3|Lyst|ENSMUSG00000019726.13|lysosomal trafficking regulator
mm39_v1_chr1_-_13442658_13442681	0.564447	UGCAUAG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr10_-_84963841_84963900	0.56408	UGCAUAG	ENSMUST00000214193.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000050813.4|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2	ENSMUST00000217027.2|Mterf2|ENSMUSG00000049038.4|mitochondrial transcription termination factor 2
mm39_v1_chr16_-_84970617_84970654	0.556521	UGCAUAG	ENSMUST00000226232.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227021.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000005406.12|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein	ENSMUST00000227723.2|App|ENSMUSG00000022892.12|amyloid beta (A4) precursor protein
mm39_v1_chr2_+_25070749_25070776	0.553898	UGCAUAG	ENSMUST00000104999.4|Nrarp|ENSMUSG00000078202.4|Notch-regulated ankyrin repeat protein
mm39_v1_chr15_+_58805605_58805685	0.548311	UGCAUAG	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr1_+_127796508_127796549	0.538786	UGCAUAG	ENSMUST00000037649.6|Rab3gap1|ENSMUSG00000036104.13|RAB3 GTPase activating protein subunit 1	ENSMUST00000212506.2|Rab3gap1|ENSMUSG00000036104.13|RAB3 GTPase activating protein subunit 1
mm39_v1_chr4_-_141602190_141602264	0.528151	UGCAUAG	ENSMUST00000036854.4|Efhd2|ENSMUSG00000040659.4|EF hand domain containing 2
mm39_v1_chr1_-_54233207_54233207	0.523779	UGCAUAG	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr2_+_157266175_157266243	0.520485	UGCAUAG	ENSMUST00000029175.14|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene	ENSMUST00000092576.11|Src|ENSMUSG00000027646.16|Rous sarcoma oncogene
mm39_v1_chr14_-_122035225_122035272	0.514882	UGCAUAG	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr3_+_32583602_32583676	0.511772	UGCAUAG	ENSMUST00000091257.11|Mfn1|ENSMUSG00000027668.14|mitofusin 1
mm39_v1_chr14_-_106134253_106134253	0.508271	UGCAUAG	ENSMUST00000022709.6|Spry2|ENSMUSG00000022114.6|sprouty RTK signaling antagonist 2
mm39_v1_chr10_+_39245746_39245808	0.503897	UGCAUAG	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr2_+_76505619_76505630	0.499631	UGCAUAG	ENSMUST00000111920.2|Plekha3|ENSMUSG00000002733.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm39_v1_chr5_+_53966956_53967025	0.495824	UGCAUAG	ENSMUST00000037337.10|Tbc1d19|ENSMUSG00000039178.10|TBC1 domain family, member 19
mm39_v1_chr2_+_37342248_37342297	0.481707	UGCAUAG	ENSMUST00000148470.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000066055.10|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000112920.2|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr10_+_62816005_62816041	0.460041	UGCAUAG	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr2_+_156038562_156038695	0.455618	UGCAUAG	ENSMUST00000037401.10|Phf20|ENSMUSG00000038116.17|PHD finger protein 20
mm39_v1_chr3_+_97565528_97565656	0.448768	UGCAUAG	ENSMUST00000045743.13|Prkab2|ENSMUSG00000038205.13|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm39_v1_chr3_-_27950491_27950540	0.438356	UGCAUAG	ENSMUST00000058077.4|Tmem212|ENSMUSG00000043164.4|transmembrane protein 212
mm39_v1_chr5_+_65694552_65694576	0.432135	UGCAUAG	ENSMUST00000142407.8|Ube2k|ENSMUSG00000029203.17|ubiquitin-conjugating enzyme E2K
mm39_v1_chr11_+_110289941_110289982	0.426188	UGCAUAG	ENSMUST00000020949.12|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6	ENSMUST00000100260.2|Map2k6|ENSMUSG00000020623.12|mitogen-activated protein kinase kinase 6
mm39_v1_chr2_+_48704121_48704187	0.423452	UGCAUAG	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr17_+_25407352_25407392	0.405645	UGCAUAG	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr15_+_40518414_40518450	0.403907	UGCAUAG	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr14_+_121272950_121272990	0.401285	UGCAUAG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr18_+_44513547_44513644	0.401086	UGCAUAG	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr5_-_143255713_143255777	0.391662	UGCAUAG	ENSMUST00000161448.8|Zfp316|ENSMUSG00000046658.17|zinc finger protein 316
mm39_v1_chr2_+_155223728_155223804	0.37686	UGCAUAG	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr10_+_122514669_122514703	0.374874	UGCAUAG	ENSMUST00000161487.8|Ppm1h|ENSMUSG00000034613.13|protein phosphatase 1H (PP2C domain containing)	ENSMUST00000067918.12|Ppm1h|ENSMUSG00000034613.13|protein phosphatase 1H (PP2C domain containing)
mm39_v1_chr5_+_114518653_114518673	0.374168	UGCAUAG	ENSMUST00000074002.12|Ube3b|ENSMUSG00000029577.14|ubiquitin protein ligase E3B
mm39_v1_chr12_+_4642987_4643091	0.370749	UGCAUAG	ENSMUST00000062580.8|Itsn2|ENSMUSG00000020640.11|intersectin 2	ENSMUST00000220311.2|Itsn2|ENSMUSG00000020640.11|intersectin 2
mm39_v1_chr2_-_120801186_120801242	0.368959	UGCAUAG	ENSMUST00000028728.6|Ubr1|ENSMUSG00000027272.6|ubiquitin protein ligase E3 component n-recognin 1
mm39_v1_chr2_-_120439764_120439798	0.365461	UGCAUAG	ENSMUST00000102496.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr4_-_57301791_57301837	0.362392	UGCAUAG	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr4_+_57434247_57434369	0.361492	UGCAUAG	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr18_+_51250748_51250822	0.359321	UGCAUAG	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr17_+_64203017_64203059	0.345752	UGCAUAG	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr1_-_170695328_170695354	0.299593	UGCAUAG	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr1_-_34882131_34882148	0.299301	UGCAUAG	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr19_+_44977512_44977555	0.296556	UGCAUAG	ENSMUST00000026225.15|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr7_+_120276801_120276868	0.280901	UGCAUAG	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr7_+_116980173_116980249	0.242007	UGCAUAG	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr10_-_115220293_115220350	0.236602	UGCAUAG	ENSMUST00000020346.6|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2	ENSMUST00000218842.2|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2	ENSMUST00000218989.2|Thap2|ENSMUSG00000020137.6|THAP domain containing, apoptosis associated protein 2
mm39_v1_chr4_-_154721288_154721330	0.22395	UGCAUAG	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr6_-_83418656_83418666	0.212279	UGCAUAG	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr12_-_40087393_40087428	0.198445	UGCAUAG	ENSMUST00000146905.2|Arl4a|ENSMUSG00000047446.19|ADP-ribosylation factor-like 4A
mm39_v1_chr14_+_67470884_67471035	0.19488	UGCAUAG	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr8_+_117983803_117983846	0.190009	UGCAUAG	ENSMUST00000166750.9|Cmip|ENSMUSG00000034390.17|c-Maf inducing protein
mm39_v1_chr1_-_134883645_134883693	0.189278	UGCAUAG	ENSMUST00000045665.13|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000086444.6|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000112163.2|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B
mm39_v1_chr3_-_104725535_104725558	0.180743	UGCAUAG	ENSMUST00000002297.12|Mov10|ENSMUSG00000002227.16|Mov10 RISC complex RNA helicase
mm39_v1_chr1_+_191449946_191450017	0.175915	UGCAUAG	ENSMUST00000133076.7|Lpgat1|ENSMUSG00000026623.17|lysophosphatidylglycerol acyltransferase 1	ENSMUST00000110855.8|Lpgat1|ENSMUSG00000026623.17|lysophosphatidylglycerol acyltransferase 1
mm39_v1_chr6_-_32565127_32565148	0.156381	UGCAUAG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr16_-_10606513_10606531	0.154953	UGCAUAG	ENSMUST00000051297.9|Tnp2|ENSMUSG00000043050.9|transition protein 2
mm39_v1_chr11_+_98754434_98754472	0.148324	UGCAUAG	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr12_+_78273356_78273432	0.134091	UGCAUAG	ENSMUST00000110388.10|Gphn|ENSMUSG00000047454.13|gephyrin
mm39_v1_chr17_-_12537635_12537690	0.112986	UGCAUAG	ENSMUST00000233755.2|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4	ENSMUST00000089058.7|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4
mm39_v1_chr10_+_58282735_58282750	0.108856	UGCAUAG	ENSMUST00000003310.7|Ranbp2|ENSMUSG00000003226.8|RAN binding protein 2
mm39_v1_chr1_+_132405099_132405229	0.092981	UGCAUAG	ENSMUST00000190825.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000190997.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000187505.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000027700.15|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	ENSMUST00000188575.7|Rbbp5|ENSMUSG00000026439.15|retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit
mm39_v1_chr7_-_44542098_44542136	0.0829397	UGCAUAG	ENSMUST00000003049.8|Med25|ENSMUSG00000002968.10|mediator complex subunit 25
mm39_v1_chr6_-_38230890_38231089	0.0733967	UGCAUAG	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr4_+_31964082_31964263	0.0706561	UGCAUAG	ENSMUST00000037607.11|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000080933.13|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108183.8|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108184.3|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7
mm39_v1_chr11_-_50216426_50216500	0.0666273	UGCAUAG	ENSMUST00000179865.8|Canx|ENSMUSG00000020368.16|calnexin	ENSMUST00000020637.9|Canx|ENSMUSG00000020368.16|calnexin
mm39_v1_chr14_-_26693189_26693189	0.0535017	UGCAUAG	ENSMUST00000036570.5|Appl1|ENSMUSG00000040760.12|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm39_v1_chr9_-_21504101_21504144	0.0494126	UGCAUAG	ENSMUST00000180365.9|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2	ENSMUST00000213809.2|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2	ENSMUST00000034700.15|Yipf2|ENSMUSG00000032182.16|Yip1 domain family, member 2
mm39_v1_chr2_+_58991352_58991398	0.0435231	UGCAUAG	ENSMUST00000037903.15|Pkp4|ENSMUSG00000026991.21|plakophilin 4
mm39_v1_chr6_-_88022172_88022252	0.0411507	UGCAUAG	ENSMUST00000203674.3|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000204126.2|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113596.8|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113600.10|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family
mm39_v1_chr6_+_8209216_8209265	0.03713	UGCAUAG	ENSMUST00000040017.8|Mios|ENSMUSG00000042447.14|meiosis regulator for oocyte development
mm39_v1_chr1_-_189902868_189902942	0.0293782	UGCAUAG	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr9_-_105372235_105372316	0.0250356	UGCAUAG	ENSMUST00000176190.8|Atp2c1|ENSMUSG00000032570.18|ATPase, Ca++-sequestering	ENSMUST00000163879.9|Atp2c1|ENSMUSG00000032570.18|ATPase, Ca++-sequestering	ENSMUST00000112558.10|Atp2c1|ENSMUSG00000032570.18|ATPase, Ca++-sequestering	ENSMUST00000176363.9|Atp2c1|ENSMUSG00000032570.18|ATPase, Ca++-sequestering
mm39_v1_chr8_-_35432783_35432869	0.0196738	UGCAUAG	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr12_-_80483343_80483379	0.0154852	UGCAUAG	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr1_-_106687457_106687478	0.0122098	UGCAUAG	ENSMUST00000010049.6|Kdsr|ENSMUSG00000009905.6|3-ketodihydrosphingosine reductase
mm39_v1_chr5_+_86952072_86952135	0.00229588	UGCAUAG	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
