mm39_v1_chr4_+_104623505_104623592	1.718	UGCAUUG	ENSMUST00000031663.10|C8b|ENSMUSG00000029656.14|complement component 8, beta polypeptide	ENSMUST00000065072.7|C8b|ENSMUSG00000029656.14|complement component 8, beta polypeptide
mm39_v1_chr9_+_74769166_74769203	1.50101	UGCAUUG	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr13_+_93810911_93810959	1.43257	UGCAUUG	ENSMUST00000048001.8|Dmgdh|ENSMUSG00000042102.8|dimethylglycine dehydrogenase precursor
mm39_v1_chr18_+_64473091_64473114	1.27554	UGCAUUG	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr9_+_68561042_68561068	1.20144	UGCAUUG	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr13_-_36918424_36918466	1.16707	UGCAUUG	ENSMUST00000037623.15|Nrn1|ENSMUSG00000039114.17|neuritin 1
mm39_v1_chr5_-_9047324_9047324	0.92103	UGCAUUG	ENSMUST00000003720.5|Crot|ENSMUSG00000003623.5|carnitine O-octanoyltransferase
mm39_v1_chr2_-_32321116_32321186	0.907628	UGCAUUG	ENSMUST00000127961.3|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	ENSMUST00000136361.8|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	ENSMUST00000052119.14|Slc25a25|ENSMUSG00000026819.16|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm39_v1_chr16_-_67417768_67417810	0.806159	UGCAUUG	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr5_+_104582978_104583024	0.803152	UGCAUUG	ENSMUST00000086833.13|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1	ENSMUST00000031243.15|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1	ENSMUST00000112748.8|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1	ENSMUST00000112746.8|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1	ENSMUST00000145084.8|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1	ENSMUST00000132457.8|Spp1|ENSMUSG00000029304.15|secreted phosphoprotein 1
mm39_v1_chr9_-_43151179_43151208	0.741888	UGCAUUG	ENSMUST00000034512.7|Oaf|ENSMUSG00000032014.7|out at first homolog
mm39_v1_chr12_+_103498542_103498542	0.700589	UGCAUUG	ENSMUST00000021631.12|Ppp4r4|ENSMUSG00000021209.13|protein phosphatase 4, regulatory subunit 4
mm39_v1_chr2_+_107120934_107121005	0.619362	UGCAUUG	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr3_-_125732255_125732268	0.533455	UGCAUUG	ENSMUST00000057944.12|Ugt8a|ENSMUSG00000032854.13|UDP galactosyltransferase 8A
mm39_v1_chr6_-_149003171_149003184	0.527095	UGCAUUG	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr17_+_81251997_81252073	0.493475	UGCAUUG	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chr17_-_91400499_91400504	0.457164	UGCAUUG	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr4_-_151946219_151946333	0.456158	UGCAUUG	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr8_-_85526653_85526912	0.42528	UGCAUUG	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr9_+_65536892_65536965	0.418771	UGCAUUG	ENSMUST00000169003.8|Rbpms2|ENSMUSG00000032387.16|RNA binding protein with multiple splicing 2
mm39_v1_chr8_+_14145848_14145931	0.403986	UGCAUUG	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr7_+_123582021_123582092	0.402106	UGCAUUG	ENSMUST00000106437.2|Hs3st4|ENSMUSG00000078591.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm39_v1_chr4_-_49845549_49845549	0.393709	UGCAUUG	ENSMUST00000093859.11|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A	ENSMUST00000076674.4|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A
mm39_v1_chr19_+_3373285_3373356	0.390448	UGCAUUG	ENSMUST00000025835.6|Cpt1a|ENSMUSG00000024900.6|carnitine palmitoyltransferase 1a, liver
mm39_v1_chr5_+_28370687_28370720	0.375651	UGCAUUG	ENSMUST00000036177.9|En2|ENSMUSG00000039095.9|engrailed 2
mm39_v1_chr4_-_53159885_53159900	0.370181	UGCAUUG	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr12_+_102915102_102915133	0.354804	UGCAUUG	ENSMUST00000101099.12|Unc79|ENSMUSG00000021198.17|unc-79 homolog
mm39_v1_chr15_+_58805605_58805685	0.352323	UGCAUUG	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chrM_+_3906_3942	0.341897	UGCAUUG	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr2_+_96148418_96148561	0.330204	UGCAUUG	ENSMUST00000135431.8|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C	ENSMUST00000162807.9|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C
mm39_v1_chr15_+_39061612_39061758	0.330008	UGCAUUG	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr4_+_102617495_102617722	0.317937	UGCAUUG	ENSMUST00000072481.12|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000156596.8|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000080728.13|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000106882.9|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chr3_+_135531409_135531425	0.31079	UGCAUUG	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr5_+_43390513_43390580	0.30793	UGCAUUG	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr13_+_117738972_117739018	0.300609	UGCAUUG	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr1_+_136552639_136552688	0.284158	UGCAUUG	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr6_-_28831746_28831746	0.284046	UGCAUUG	ENSMUST00000062304.7|Lrrc4|ENSMUSG00000049939.7|leucine rich repeat containing 4
mm39_v1_chr1_-_25267894_25267916	0.258811	UGCAUUG	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr19_-_7083094_7083094	0.258697	UGCAUUG	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr12_+_10440755_10440837	0.258649	UGCAUUG	ENSMUST00000020947.7|Rdh14|ENSMUSG00000020621.7|retinol dehydrogenase 14 (all-trans and 9-cis)
mm39_v1_chr13_+_9143995_9144018	0.252836	UGCAUUG	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chr6_-_28134544_28134544	0.251278	UGCAUUG	ENSMUST00000115323.8|Grm8|ENSMUSG00000024211.16|glutamate receptor, metabotropic 8
mm39_v1_chr6_-_38853097_38853167	0.233772	UGCAUUG	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr15_+_102829538_102829568	0.228088	UGCAUUG	ENSMUST00000001700.7|Hoxc13|ENSMUSG00000001655.7|homeobox C13
mm39_v1_chr11_-_60111391_60111458	0.221376	UGCAUUG	ENSMUST00000020846.8|Srebf1|ENSMUSG00000020538.16|sterol regulatory element binding transcription factor 1
mm39_v1_chr12_-_72117865_72117899	0.217133	UGCAUUG	ENSMUST00000050649.6|Gpr135|ENSMUSG00000043398.6|G protein-coupled receptor 135
mm39_v1_chr18_-_77652820_77652858	0.213322	UGCAUUG	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr13_-_105191403_105191438	0.21169	UGCAUUG	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr9_+_65201542_65201624	0.21158	UGCAUUG	ENSMUST00000015501.11|Clpx|ENSMUSG00000015357.11|caseinolytic mitochondrial matrix peptidase chaperone subunit	ENSMUST00000113824.8|Clpx|ENSMUSG00000015357.11|caseinolytic mitochondrial matrix peptidase chaperone subunit
mm39_v1_chr1_-_123973223_123973308	0.209237	UGCAUUG	ENSMUST00000112606.8|Dpp10|ENSMUSG00000036815.18|dipeptidylpeptidase 10
mm39_v1_chr13_-_96807346_96807444	0.190007	UGCAUUG	ENSMUST00000022176.15|Hmgcr|ENSMUSG00000021670.15|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm39_v1_chr11_+_31822211_31822263	0.188088	UGCAUUG	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr14_+_67148619_67148698	0.187633	UGCAUUG	ENSMUST00000089236.11|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2	ENSMUST00000122431.3|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2
mm39_v1_chr14_-_32110312_32110353	0.185591	UGCAUUG	ENSMUST00000100723.4|1700024G13Rik|ENSMUSG00000072473.5|RIKEN cDNA 1700024G13 gene
mm39_v1_chr19_+_43428843_43428886	0.185344	UGCAUUG	ENSMUST00000223787.2|Cnnm1|ENSMUSG00000025189.10|cyclin M1	ENSMUST00000165311.3|Cnnm1|ENSMUSG00000025189.10|cyclin M1
mm39_v1_chr3_+_58322119_58322161	0.181496	UGCAUUG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr12_-_14202041_14202070	0.172875	UGCAUUG	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr4_+_124696336_124696381	0.168076	UGCAUUG	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr15_+_40518414_40518450	0.167112	UGCAUUG	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr5_-_129030367_129030550	0.165158	UGCAUUG	ENSMUST00000111346.6|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2	ENSMUST00000200470.5|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2
mm39_v1_chr3_-_84212069_84212116	0.165104	UGCAUUG	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr1_-_58625431_58625482	0.164593	UGCAUUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr3_-_72965136_72965136	0.163444	UGCAUUG	ENSMUST00000059407.9|Slitrk3|ENSMUSG00000048304.9|SLIT and NTRK-like family, member 3
mm39_v1_chr6_+_105654729_105654756	0.158115	UGCAUUG	ENSMUST00000089208.9|Cntn4|ENSMUSG00000064293.15|contactin 4
mm39_v1_chr15_+_88746380_88746396	0.152865	UGCAUUG	ENSMUST00000042818.11|Pim3|ENSMUSG00000035828.12|proviral integration site 3
mm39_v1_chrX_-_103024847_103024893	0.151184	UGCAUUG	ENSMUST00000121153.8|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting	ENSMUST00000070705.6|Rlim|ENSMUSG00000056537.12|ring finger protein, LIM domain interacting
mm39_v1_chr18_+_37130860_37130933	0.148724	UGCAUUG	ENSMUST00000115659.6|Pcdha9|ENSMUSG00000103770.2|protocadherin alpha 9
mm39_v1_chr3_+_127426783_127426789	0.148511	UGCAUUG	ENSMUST00000029587.9|Neurog2|ENSMUSG00000027967.9|neurogenin 2
mm39_v1_chr7_+_78922947_78922973	0.146667	UGCAUUG	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr5_-_102217770_102217807	0.146052	UGCAUUG	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr10_-_5872386_5872405	0.145628	UGCAUUG	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr18_-_64794338_64794338	0.142437	UGCAUUG	ENSMUST00000025482.10|Atp8b1|ENSMUSG00000039529.10|ATPase, class I, type 8B, member 1
mm39_v1_chr2_+_90677499_90677638	0.1398	UGCAUUG	ENSMUST00000136872.8|Mtch2|ENSMUSG00000027282.18|mitochondrial carrier 2	ENSMUST00000150232.8|Mtch2|ENSMUSG00000027282.18|mitochondrial carrier 2	ENSMUST00000111467.4|Mtch2|ENSMUSG00000027282.18|mitochondrial carrier 2
mm39_v1_chr19_+_22425565_22425596	0.135825	UGCAUUG	ENSMUST00000037901.14|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr12_+_55611975_55612042	0.13534	UGCAUUG	ENSMUST00000080123.2|Aldoart2|ENSMUSG00000063129.2|aldolase 1 A, retrogene 2
mm39_v1_chr19_+_38825005_38825056	0.13453	UGCAUUG	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr3_-_107603778_107603890	0.134456	UGCAUUG	ENSMUST00000029490.15|Ahcyl1|ENSMUSG00000027893.15|S-adenosylhomocysteine hydrolase-like 1
mm39_v1_chr8_-_81466126_81466126	0.132217	UGCAUUG	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr1_+_187730018_187730031	0.128261	UGCAUUG	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr3_-_26187883_26187883	0.125587	UGCAUUG	ENSMUST00000108308.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1	ENSMUST00000075054.10|Nlgn1|ENSMUSG00000063887.14|neuroligin 1
mm39_v1_chr19_+_59446804_59446883	0.124932	UGCAUUG	ENSMUST00000062216.4|Emx2|ENSMUSG00000043969.5|empty spiracles homeobox 2
mm39_v1_chr3_-_116601815_116601849	0.119371	UGCAUUG	ENSMUST00000040603.14|Agl|ENSMUSG00000033400.15|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm39_v1_chr2_+_28095660_28095684	0.117527	UGCAUUG	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr7_-_141009264_141009339	0.117374	UGCAUUG	ENSMUST00000164387.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000137488.2|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1	ENSMUST00000084436.10|Cend1|ENSMUSG00000060240.13|cell cycle exit and neuronal differentiation 1
mm39_v1_chr11_-_85030761_85030864	0.117129	UGCAUUG	ENSMUST00000108075.9|Usp32|ENSMUSG00000000804.15|ubiquitin specific peptidase 32
mm39_v1_chr2_-_48839276_48839288	0.116299	UGCAUUG	ENSMUST00000028098.11|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4
mm39_v1_chr3_+_157653051_157653148	0.114387	UGCAUUG	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr1_+_191638854_191638879	0.110119	UGCAUUG	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr19_-_6107766_6107815	0.100587	UGCAUUG	ENSMUST00000235520.2|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49	ENSMUST00000007482.8|Mrpl49|ENSMUSG00000007338.11|mitochondrial ribosomal protein L49
mm39_v1_chr16_+_93885775_93885793	0.10004	UGCAUUG	ENSMUST00000072182.9|Sim2|ENSMUSG00000062713.9|single-minded family bHLH transcription factor 2
mm39_v1_chr4_-_133746138_133746152	0.0926472	UGCAUUG	ENSMUST00000051674.3|Lin28a|ENSMUSG00000050966.10|lin-28 homolog A (C. elegans)
mm39_v1_chr11_-_55498559_55498650	0.0907759	UGCAUUG	ENSMUST00000108853.8|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit	ENSMUST00000075603.5|Glra1|ENSMUSG00000000263.16|glycine receptor, alpha 1 subunit
mm39_v1_chr1_-_176102840_176102875	0.0869064	UGCAUUG	ENSMUST00000111166.2|Pld5|ENSMUSG00000055214.16|phospholipase D family, member 5	ENSMUST00000065967.14|Pld5|ENSMUSG00000055214.16|phospholipase D family, member 5
mm39_v1_chrX_+_13147209_13147270	0.0865442	UGCAUUG	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr18_-_12369351_12369463	0.0864146	UGCAUUG	ENSMUST00000025279.6|Npc1|ENSMUSG00000024413.15|NPC intracellular cholesterol transporter 1
mm39_v1_chr14_-_124914516_124914539	0.0858737	UGCAUUG	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr17_-_64638887_64638951	0.0826902	UGCAUUG	ENSMUST00000172818.8|Pja2|ENSMUSG00000024083.17|praja ring finger ubiquitin ligase 2
mm39_v1_chr8_-_35432783_35432869	0.0815059	UGCAUUG	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr12_-_67269323_67269354	0.0802838	UGCAUUG	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr1_-_57011595_57011661	0.0752559	UGCAUUG	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr3_-_115508680_115508721	0.0746496	UGCAUUG	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr1_+_6557455_6557563	0.0720101	UGCAUUG	ENSMUST00000140079.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131494.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr4_-_14621805_14621819	0.0676712	UGCAUUG	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr3_+_41510160_41510195	0.0669711	UGCAUUG	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr14_+_9646630_9646731	0.0668748	UGCAUUG	ENSMUST00000112658.8|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000112657.9|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000177814.2|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator	ENSMUST00000067491.14|Cadps|ENSMUSG00000054423.15|Ca2+-dependent secretion activator
mm39_v1_chr11_+_105480796_105480857	0.0643341	UGCAUUG	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr8_-_122379631_122379652	0.0625445	UGCAUUG	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr13_-_119545520_119545540	0.0610741	UGCAUUG	ENSMUST00000069902.13|Nnt|ENSMUSG00000025453.19|nicotinamide nucleotide transhydrogenase	ENSMUST00000099149.10|Nnt|ENSMUSG00000025453.19|nicotinamide nucleotide transhydrogenase	ENSMUST00000109204.8|Nnt|ENSMUSG00000025453.19|nicotinamide nucleotide transhydrogenase
mm39_v1_chr12_-_46865709_46865720	0.059744	UGCAUUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr11_-_29975916_29976033	0.0587149	UGCAUUG	ENSMUST00000058902.6|Eml6|ENSMUSG00000044072.15|echinoderm microtubule associated protein like 6
mm39_v1_chr12_+_38830081_38830116	0.0571093	UGCAUUG	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr4_-_136684082_136684176	0.0569955	UGCAUUG	ENSMUST00000030420.9|Epha8|ENSMUSG00000028661.9|Eph receptor A8
mm39_v1_chr9_+_25163735_25163812	0.056467	UGCAUUG	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr3_-_116047148_116047155	0.0532986	UGCAUUG	ENSMUST00000090473.7|Gpr88|ENSMUSG00000068696.7|G-protein coupled receptor 88
mm39_v1_chr8_-_86026385_86026431	0.0518024	UGCAUUG	ENSMUST00000034131.10|Vps35|ENSMUSG00000031696.10|VPS35 retromer complex component
mm39_v1_chr5_+_30360246_30360300	0.0495695	UGCAUUG	ENSMUST00000026841.15|Hadhb|ENSMUSG00000059447.14|hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	ENSMUST00000123980.8|Hadhb|ENSMUSG00000059447.14|hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	ENSMUST00000114783.6|Hadhb|ENSMUSG00000059447.14|hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta	ENSMUST00000114786.8|Hadhb|ENSMUSG00000059447.14|hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
mm39_v1_chr1_+_118555668_118555686	0.0462493	UGCAUUG	ENSMUST00000027629.10|Tfcp2l1|ENSMUSG00000026380.11|transcription factor CP2-like 1
mm39_v1_chr7_+_109721230_109721342	0.044838	UGCAUUG	ENSMUST00000033326.10|Wee1|ENSMUSG00000031016.10|WEE 1 homolog 1 (S. pombe)
mm39_v1_chr14_-_61677258_61677323	0.0444229	UGCAUUG	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr6_+_4903299_4903347	0.0438379	UGCAUUG	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr3_+_101917455_101917487	0.0436148	UGCAUUG	ENSMUST00000066187.6|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2	ENSMUST00000198675.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chr19_-_59334172_59334277	0.0412116	UGCAUUG	ENSMUST00000099274.4|Pdzd8|ENSMUSG00000074746.4|PDZ domain containing 8
mm39_v1_chr9_-_89996712_89996779	0.0379314	UGCAUUG	ENSMUST00000191353.2|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1	ENSMUST00000085248.12|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1
mm39_v1_chr1_+_179788037_179788150	0.0366556	UGCAUUG	ENSMUST00000097453.9|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000111117.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr1_-_164285914_164285932	0.035279	UGCAUUG	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chr9_-_42383494_42383561	0.0342797	UGCAUUG	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr3_+_31956814_31956852	0.0288791	UGCAUUG	ENSMUST00000192429.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000191869.6|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000178668.2|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2	ENSMUST00000119970.8|Kcnmb2|ENSMUSG00000037610.16|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm39_v1_chr14_-_30075424_30075492	0.0230641	UGCAUUG	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr4_+_84802513_84802551	0.0224363	UGCAUUG	ENSMUST00000047023.13|Cntln|ENSMUSG00000038070.16|centlein, centrosomal protein
mm39_v1_chr1_-_13442658_13442681	0.0224287	UGCAUUG	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr15_-_81900335_81900372	0.0205913	UGCAUUG	ENSMUST00000152227.8|Desi1|ENSMUSG00000022472.17|desumoylating isopeptidase 1
mm39_v1_chr10_+_80330669_80330714	0.0204374	UGCAUUG	ENSMUST00000051773.9|Onecut3|ENSMUSG00000045518.9|one cut domain, family member 3
mm39_v1_chr17_+_27874519_27874542	0.0181589	UGCAUUG	ENSMUST00000045896.11|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
mm39_v1_chr2_-_73044752_73044791	0.0162395	UGCAUUG	ENSMUST00000028517.13|Ola1|ENSMUSG00000027108.16|Obg-like ATPase 1
mm39_v1_chr2_+_93472657_93472733	0.0159386	UGCAUUG	ENSMUST00000042078.10|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4	ENSMUST00000111254.2|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4
mm39_v1_chr3_-_69034425_69034446	0.0152402	UGCAUUG	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr15_+_102875229_102875248	0.0150222	UGCAUUG	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr15_+_44482944_44483033	0.0142069	UGCAUUG	ENSMUST00000022964.9|Ebag9|ENSMUSG00000022339.10|estrogen receptor-binding fragment-associated gene 9
mm39_v1_chr17_+_29709723_29709742	0.0140403	UGCAUUG	ENSMUST00000024811.9|Pim1|ENSMUSG00000024014.9|proviral integration site 1
mm39_v1_chr9_-_75316625_75316668	0.0133801	UGCAUUG	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr7_+_131144596_131144596	0.0115092	UGCAUUG	ENSMUST00000046093.6|Hmx3|ENSMUSG00000040148.6|H6 homeobox 3
mm39_v1_chr4_-_134014525_134014575	0.00910855	UGCAUUG	ENSMUST00000145006.8|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105877.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000127857.2|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105876.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like
mm39_v1_chr18_-_9450097_9450174	0.00797401	UGCAUUG	ENSMUST00000053917.6|Ccny|ENSMUSG00000024286.9|cyclin Y
mm39_v1_chr10_-_80492315_80492357	0.00382805	UGCAUUG	ENSMUST00000126980.8|Btbd2|ENSMUSG00000003344.15|BTB (POZ) domain containing 2
mm39_v1_chr3_+_96634974_96635060	0.00203428	UGCAUUG	ENSMUST00000029740.14|Rnf115|ENSMUSG00000028098.14|ring finger protein 115
mm39_v1_chr4_-_59549314_59549364	0.00109512	UGCAUUG	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr10_-_89522112_89522170	0.000426202	UGCAUUG	ENSMUST00000092227.12|Scyl2|ENSMUSG00000069539.12|SCY1-like 2 (S. cerevisiae)	ENSMUST00000174252.8|Scyl2|ENSMUSG00000069539.12|SCY1-like 2 (S. cerevisiae)
