mm39_v1_chr10_-_108846816_108846844	8.1901	UUGGUCC	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr8_+_55407872_55407889	7.92785	UUGGUCC	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr6_+_114259596_114259777	6.73546	UUGGUCC	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr3_+_96088467_96088483	6.17615	UUGGUCC	ENSMUST00000035371.9|Sv2a|ENSMUSG00000038486.10|synaptic vesicle glycoprotein 2 a
mm39_v1_chr3_-_80710097_80710147	6.17205	UUGGUCC	ENSMUST00000075316.10|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)	ENSMUST00000107745.8|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm39_v1_chr13_+_89687915_89687915	6.07741	UUGGUCC	ENSMUST00000022108.9|Hapln1|ENSMUSG00000021613.10|hyaluronan and proteoglycan link protein 1
mm39_v1_chr15_-_95426419_95426523	6.01955	UUGGUCC	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr6_+_22875494_22875511	5.79124	UUGGUCC	ENSMUST00000090568.7|Ptprz1|ENSMUSG00000068748.8|protein tyrosine phosphatase, receptor type Z, polypeptide 1
mm39_v1_chr2_-_115896279_115896334	5.51737	UUGGUCC	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr1_+_66507523_66507606	5.42079	UUGGUCC	ENSMUST00000061620.17|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator	ENSMUST00000212557.3|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator
mm39_v1_chr8_-_72124359_72124416	5.40641	UUGGUCC	ENSMUST00000177517.8|Unc13a|ENSMUSG00000034799.17|unc-13 homolog A	ENSMUST00000030170.15|Unc13a|ENSMUSG00000034799.17|unc-13 homolog A
mm39_v1_chr13_+_54519161_54519173	4.97212	UUGGUCC	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr2_-_24653059_24653164	4.89342	UUGGUCC	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr7_-_126620378_126620387	4.8735	UUGGUCC	ENSMUST00000159916.5|Prrt2|ENSMUSG00000045114.11|proline-rich transmembrane protein 2
mm39_v1_chr15_+_87509413_87509434	4.76302	UUGGUCC	ENSMUST00000068088.8|Tafa5|ENSMUSG00000054863.10|TAFA chemokine like family member 5
mm39_v1_chr11_-_90281721_90281753	4.6207	UUGGUCC	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr14_+_111912529_111912556	4.5469	UUGGUCC	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr11_-_102837514_102837551	4.53704	UUGGUCC	ENSMUST00000057849.6|C1ql1|ENSMUSG00000045532.6|complement component 1, q subcomponent-like 1
mm39_v1_chr18_-_25886750_25886807	4.51354	UUGGUCC	ENSMUST00000224553.2|Celf4|ENSMUSG00000024268.17|CUGBP, Elav-like family member 4	ENSMUST00000025117.14|Celf4|ENSMUSG00000024268.17|CUGBP, Elav-like family member 4
mm39_v1_chr4_+_42916666_42916713	4.43255	UUGGUCC	ENSMUST00000132173.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24	ENSMUST00000107975.8|Phf24|ENSMUSG00000036062.14|PHD finger protein 24
mm39_v1_chr15_-_34495329_34495401	4.28509	UUGGUCC	ENSMUST00000022946.6|Rida|ENSMUSG00000022323.12|reactive intermediate imine deaminase A homolog
mm39_v1_chr11_-_97520511_97520541	4.12828	UUGGUCC	ENSMUST00000052281.6|Epop|ENSMUSG00000043439.6|elongin BC and polycomb repressive complex 2 associated protein
mm39_v1_chr1_-_22845124_22845203	4.11807	UUGGUCC	ENSMUST00000115273.10|Rims1|ENSMUSG00000041670.20|regulating synaptic membrane exocytosis 1
mm39_v1_chrX_-_94209913_94210145	3.9789	UUGGUCC	ENSMUST00000113873.9|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113876.9|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000199920.5|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113885.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113883.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000196012.2|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000182001.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113878.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000113882.8|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9	ENSMUST00000182562.2|Arhgef9|ENSMUSG00000025656.18|CDC42 guanine nucleotide exchange factor (GEF) 9
mm39_v1_chr10_+_106306122_106306228	3.97525	UUGGUCC	ENSMUST00000029404.17|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	ENSMUST00000217854.2|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm39_v1_chrX_-_164110372_164110416	3.93372	UUGGUCC	ENSMUST00000058787.9|Glra2|ENSMUSG00000018589.9|glycine receptor, alpha 2 subunit
mm39_v1_chr12_+_12312135_12312158	3.89352	UUGGUCC	ENSMUST00000069066.14|Cyria|ENSMUSG00000020589.18|CYFIP related Rac1 interactor A
mm39_v1_chr15_-_90934021_90934058	3.81623	UUGGUCC	ENSMUST00000109287.4|Kif21a|ENSMUSG00000022629.18|kinesin family member 21A	ENSMUST00000067205.16|Kif21a|ENSMUSG00000022629.18|kinesin family member 21A	ENSMUST00000088614.13|Kif21a|ENSMUSG00000022629.18|kinesin family member 21A
mm39_v1_chr19_-_10217968_10218125	3.73286	UUGGUCC	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr6_+_129510117_129510144	3.72712	UUGGUCC	ENSMUST00000032264.9|Gabarapl1|ENSMUSG00000030161.9|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm39_v1_chr13_+_104246245_104246254	3.63321	UUGGUCC	ENSMUST00000044385.14|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm39_v1_chr15_+_83676140_83676355	3.5918	UUGGUCC	ENSMUST00000172115.8|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1	ENSMUST00000172398.2|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1
mm39_v1_chr11_+_80367839_80367910	3.52373	UUGGUCC	ENSMUST00000053413.12|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	ENSMUST00000147694.2|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm39_v1_chr7_-_105289515_105289623	3.46193	UUGGUCC	ENSMUST00000133519.8|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000209550.2|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000210911.2|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000084782.10|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000131446.8|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2
mm39_v1_chr5_+_63806451_63806451	3.44086	UUGGUCC	ENSMUST00000159584.3|Nwd2|ENSMUSG00000090061.10|NACHT and WD repeat domain containing 2
mm39_v1_chr3_-_158267771_158267939	3.36844	UUGGUCC	ENSMUST00000199890.5|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000238317.3|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000200137.5|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7	ENSMUST00000106044.6|Lrrc7|ENSMUSG00000028176.14|leucine rich repeat containing 7
mm39_v1_chr5_-_113458563_113458654	3.27969	UUGGUCC	ENSMUST00000154248.8|Sgsm1|ENSMUSG00000042216.14|small G protein signaling modulator 1	ENSMUST00000112325.8|Sgsm1|ENSMUSG00000042216.14|small G protein signaling modulator 1	ENSMUST00000048112.13|Sgsm1|ENSMUSG00000042216.14|small G protein signaling modulator 1
mm39_v1_chr6_-_112924205_112924239	3.22359	UUGGUCC	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr16_+_34975245_34975299	3.22299	UUGGUCC	ENSMUST00000114913.3|Adcy5|ENSMUSG00000022840.10|adenylate cyclase 5
mm39_v1_chr1_+_166081664_166081722	3.18916	UUGGUCC	ENSMUST00000111416.7|Ildr2|ENSMUSG00000040612.14|immunoglobulin-like domain containing receptor 2
mm39_v1_chr9_+_75922137_75922337	3.18566	UUGGUCC	ENSMUST00000008052.13|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000183425.8|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000183979.8|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000117981.3|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm39_v1_chr17_+_93506590_93506601	3.17096	UUGGUCC	ENSMUST00000064775.8|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr13_-_25121568_25121684	3.14805	UUGGUCC	ENSMUST00000037615.7|Aldh5a1|ENSMUSG00000035936.7|aldhehyde dehydrogenase family 5, subfamily A1
mm39_v1_chr11_-_72026547_72026604	3.11806	UUGGUCC	ENSMUST00000108508.3|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3	ENSMUST00000075258.13|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3
mm39_v1_chr12_+_49429574_49429666	3.10866	UUGGUCC	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr8_-_105122397_105122490	3.09843	UUGGUCC	ENSMUST00000179802.2|Cmtm4|ENSMUSG00000096188.2|CKLF-like MARVEL transmembrane domain containing 4
mm39_v1_chr16_+_80997580_80997629	3.06856	UUGGUCC	ENSMUST00000037785.14|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2	ENSMUST00000067602.5|Ncam2|ENSMUSG00000022762.19|neural cell adhesion molecule 2
mm39_v1_chr7_+_15864265_15864290	2.98385	UUGGUCC	ENSMUST00000168693.3|Slc8a2|ENSMUSG00000030376.9|solute carrier family 8 (sodium/calcium exchanger), member 2
mm39_v1_chr5_+_142946098_142946131	2.97215	UUGGUCC	ENSMUST00000031565.15|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1	ENSMUST00000198017.5|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr4_-_46991842_46991916	2.94842	UUGGUCC	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr18_+_64387428_64387457	2.9459	UUGGUCC	ENSMUST00000025477.15|St8sia3|ENSMUSG00000056812.15|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm39_v1_chr6_-_120470768_120470874	2.87718	UUGGUCC	ENSMUST00000178687.2|Tmem121b|ENSMUSG00000094626.2|transmembrane protein 121B
mm39_v1_chr3_-_57755500_57755519	2.81929	UUGGUCC	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr7_+_90739904_90739959	2.80393	UUGGUCC	ENSMUST00000107196.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000074273.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr10_+_27950809_27950870	2.77572	UUGGUCC	ENSMUST00000166468.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K	ENSMUST00000218359.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K	ENSMUST00000218276.2|Ptprk|ENSMUSG00000019889.11|protein tyrosine phosphatase, receptor type, K
mm39_v1_chr17_-_13179589_13179634	2.73816	UUGGUCC	ENSMUST00000233792.2|Acat2|ENSMUSG00000023832.15|acetyl-Coenzyme A acetyltransferase 2	ENSMUST00000007005.14|Acat2|ENSMUSG00000023832.15|acetyl-Coenzyme A acetyltransferase 2
mm39_v1_chr18_+_86729184_86729235	2.67064	UUGGUCC	ENSMUST00000068423.10|Cbln2|ENSMUSG00000024647.15|cerebellin 2 precursor protein
mm39_v1_chr5_+_14564932_14565007	2.64365	UUGGUCC	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr2_+_138098454_138098499	2.63982	UUGGUCC	ENSMUST00000091556.12|Btbd3|ENSMUSG00000062098.12|BTB (POZ) domain containing 3
mm39_v1_chr13_+_48414582_48414704	2.63883	UUGGUCC	ENSMUST00000021810.3|Id4|ENSMUSG00000021379.3|inhibitor of DNA binding 4
mm39_v1_chr3_-_33136153_33136217	2.57359	UUGGUCC	ENSMUST00000108225.10|Pex5l|ENSMUSG00000027674.17|peroxisomal biogenesis factor 5-like
mm39_v1_chr15_-_66841465_66841496	2.57174	UUGGUCC	ENSMUST00000170903.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000166420.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000005256.14|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000164070.2|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1
mm39_v1_chr5_-_103247920_103247954	2.55466	UUGGUCC	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr1_+_134637031_134637056	2.47504	UUGGUCC	ENSMUST00000121990.2|Syt2|ENSMUSG00000026452.16|synaptotagmin II
mm39_v1_chr6_+_86826470_86826577	2.39161	UUGGUCC	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr14_-_55019387_55019411	2.32965	UUGGUCC	ENSMUST00000022787.8|Slc7a8|ENSMUSG00000022180.8|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm39_v1_chr1_+_153528689_153528771	2.22068	UUGGUCC	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr14_+_84680993_84681009	2.19818	UUGGUCC	ENSMUST00000071370.7|Pcdh17|ENSMUSG00000035566.8|protocadherin 17
mm39_v1_chr11_+_75084609_75084691	2.19233	UUGGUCC	ENSMUST00000102514.4|Rtn4rl1|ENSMUSG00000045287.7|reticulon 4 receptor-like 1
mm39_v1_chr11_-_69260203_69260242	2.18026	UUGGUCC	ENSMUST00000092971.13|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3	ENSMUST00000108661.8|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3
mm39_v1_chr5_+_139893698_139893698	2.16322	UUGGUCC	ENSMUST00000050519.8|Elfn1|ENSMUSG00000048988.9|leucine rich repeat and fibronectin type III, extracellular 1
mm39_v1_chr11_+_101066867_101066867	2.15921	UUGGUCC	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr3_+_129974531_129974548	2.13186	UUGGUCC	ENSMUST00000080335.11|Col25a1|ENSMUSG00000058897.19|collagen, type XXV, alpha 1	ENSMUST00000106353.2|Col25a1|ENSMUSG00000058897.19|collagen, type XXV, alpha 1
mm39_v1_chr19_+_45003304_45003445	2.12565	UUGGUCC	ENSMUST00000039016.14|Lzts2|ENSMUSG00000035342.15|leucine zipper, putative tumor suppressor 2
mm39_v1_chr9_-_113855776_113855833	2.02997	UUGGUCC	ENSMUST00000035090.14|Fbxl2|ENSMUSG00000032507.16|F-box and leucine-rich repeat protein 2
mm39_v1_chr2_-_162502994_162503067	2.0215	UUGGUCC	ENSMUST00000109442.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109445.9|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109443.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109441.2|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T
mm39_v1_chr19_+_46750016_46750057	2.01048	UUGGUCC	ENSMUST00000099373.12|Cnnm2|ENSMUSG00000064105.14|cyclin M2	ENSMUST00000077666.6|Cnnm2|ENSMUSG00000064105.14|cyclin M2
mm39_v1_chr3_+_141170941_141170983	1.95651	UUGGUCC	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr12_-_45120895_45121089	1.94559	UUGGUCC	ENSMUST00000120531.8|Stxbp6|ENSMUSG00000046314.17|syntaxin binding protein 6 (amisyn)	ENSMUST00000143376.8|Stxbp6|ENSMUSG00000046314.17|syntaxin binding protein 6 (amisyn)
mm39_v1_chr15_+_99599978_99600010	1.93113	UUGGUCC	ENSMUST00000023759.6|Smarcd1|ENSMUSG00000023018.6|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm39_v1_chr10_+_107107477_107107557	1.92374	UUGGUCC	ENSMUST00000020057.16|Lin7a|ENSMUSG00000019906.16|lin-7 homolog A (C. elegans)
mm39_v1_chr9_+_27702243_27702299	1.90311	UUGGUCC	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr17_-_46798566_46798608	1.89428	UUGGUCC	ENSMUST00000047034.9|Ttbk1|ENSMUSG00000015599.10|tau tubulin kinase 1
mm39_v1_chr15_+_100366886_100366954	1.88558	UUGGUCC	ENSMUST00000037001.10|Letmd1|ENSMUSG00000037353.10|LETM1 domain containing 1	ENSMUST00000230294.2|Letmd1|ENSMUSG00000037353.10|LETM1 domain containing 1
mm39_v1_chr2_+_163444214_163444242	1.88432	UUGGUCC	ENSMUST00000171696.8|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like	ENSMUST00000109408.10|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like
mm39_v1_chr16_+_20354225_20354300	1.85027	UUGGUCC	ENSMUST00000090023.13|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000007216.9|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000232001.2|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit
mm39_v1_chr7_+_138665900_138665964	1.80698	UUGGUCC	ENSMUST00000026551.15|Dpysl4|ENSMUSG00000025478.16|dihydropyrimidinase-like 4
mm39_v1_chr6_-_35516700_35516823	1.78958	UUGGUCC	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chrX_+_92330102_92330128	1.77687	UUGGUCC	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr7_-_97827461_97827481	1.77568	UUGGUCC	ENSMUST00000040971.14|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chrX_+_12454031_12454085	1.77511	UUGGUCC	ENSMUST00000033313.3|Atp6ap2|ENSMUSG00000031007.3|ATPase, H+ transporting, lysosomal accessory protein 2
mm39_v1_chrX_-_42256694_42256715	1.71933	UUGGUCC	ENSMUST00000115058.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1	ENSMUST00000115059.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1
mm39_v1_chr13_+_97377604_97377624	1.70183	UUGGUCC	ENSMUST00000041623.9|Enc1|ENSMUSG00000041773.9|ectodermal-neural cortex 1
mm39_v1_chr10_-_43050516_43050565	1.68976	UUGGUCC	ENSMUST00000040275.9|Sobp|ENSMUSG00000038248.9|sine oculis binding protein
mm39_v1_chr8_-_106292616_106292704	1.65897	UUGGUCC	ENSMUST00000013304.8|Atp6v0d1|ENSMUSG00000013160.8|ATPase, H+ transporting, lysosomal V0 subunit D1
mm39_v1_chr8_+_26008773_26008788	1.65773	UUGGUCC	ENSMUST00000084027.13|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000178276.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000179592.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr4_+_44004437_44004455	1.65241	UUGGUCC	ENSMUST00000107846.10|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)
mm39_v1_chr1_-_186438177_186438196	1.64128	UUGGUCC	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr4_-_138123700_138123839	1.6377	UUGGUCC	ENSMUST00000105032.4|Fam43b|ENSMUSG00000078235.4|family with sequence similarity 43, member B
mm39_v1_chr4_+_137004793_137004800	1.63698	UUGGUCC	ENSMUST00000045747.5|Wnt4|ENSMUSG00000036856.5|wingless-type MMTV integration site family, member 4
mm39_v1_chr11_-_6425877_6425917	1.59776	UUGGUCC	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr7_+_51528788_51528813	1.59534	UUGGUCC	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr6_-_85310393_85310424	1.57112	UUGGUCC	ENSMUST00000059034.13|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5	ENSMUST00000045846.12|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5	ENSMUST00000113788.2|Sfxn5|ENSMUSG00000033720.13|sideroflexin 5
mm39_v1_chr12_+_111132779_111132832	1.53655	UUGGUCC	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr18_+_53995156_53995215	1.53103	UUGGUCC	ENSMUST00000069597.8|Csnk1g3|ENSMUSG00000073563.4|casein kinase 1, gamma 3
mm39_v1_chr1_+_132345293_132345348	1.49318	UUGGUCC	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr7_-_112968533_112968602	1.48587	UUGGUCC	ENSMUST00000047091.14|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10	ENSMUST00000119278.8|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10
mm39_v1_chr3_+_105359641_105359688	1.47593	UUGGUCC	ENSMUST00000098761.10|Kcnd3|ENSMUSG00000040896.17|potassium voltage-gated channel, Shal-related family, member 3
mm39_v1_chr11_+_78079243_78079311	1.4627	UUGGUCC	ENSMUST00000002128.14|Rab34|ENSMUSG00000002059.19|RAB34, member RAS oncogene family	ENSMUST00000150941.8|Rab34|ENSMUSG00000002059.19|RAB34, member RAS oncogene family
mm39_v1_chr2_-_32977182_32977265	1.46066	UUGGUCC	ENSMUST00000102810.10|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr9_+_123358810_123358824	1.45808	UUGGUCC	ENSMUST00000026270.9|Sacm1l|ENSMUSG00000025240.11|SAC1 suppressor of actin mutations 1-like (yeast)	ENSMUST00000239083.2|Sacm1l|ENSMUSG00000025240.11|SAC1 suppressor of actin mutations 1-like (yeast)
mm39_v1_chr2_+_29692638_29692660	1.44853	UUGGUCC	ENSMUST00000080065.3|Slc27a4|ENSMUSG00000059316.3|solute carrier family 27 (fatty acid transporter), member 4
mm39_v1_chr3_-_100592747_100592819	1.40715	UUGGUCC	ENSMUST00000008907.14|Man1a2|ENSMUSG00000008763.17|mannosidase, alpha, class 1A, member 2
mm39_v1_chr13_+_92981257_92981298	1.3959	UUGGUCC	ENSMUST00000076169.4|Mtx3|ENSMUSG00000021704.9|metaxin 3
mm39_v1_chr11_+_102919153_102919195	1.37096	UUGGUCC	ENSMUST00000021314.8|Nmt1|ENSMUSG00000020936.9|N-myristoyltransferase 1
mm39_v1_chr9_+_45029080_45029179	1.32909	UUGGUCC	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chr3_-_63872189_63872208	1.30432	UUGGUCC	ENSMUST00000029402.15|Slc33a1|ENSMUSG00000027822.17|solute carrier family 33 (acetyl-CoA transporter), member 1
mm39_v1_chr11_+_76092833_76092858	1.26684	UUGGUCC	ENSMUST00000094014.10|Tlcd3a|ENSMUSG00000069808.14|TLC domain containing 3A
mm39_v1_chr4_-_57301791_57301837	1.25784	UUGGUCC	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr6_-_72593983_72593983	1.24584	UUGGUCC	ENSMUST00000070524.5|Tgoln1|ENSMUSG00000056429.5|trans-golgi network protein
mm39_v1_chr7_+_99184645_99184709	1.23601	UUGGUCC	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr6_+_137229427_137229472	1.21858	UUGGUCC	ENSMUST00000077115.13|Ptpro|ENSMUSG00000030223.15|protein tyrosine phosphatase, receptor type, O
mm39_v1_chr4_-_122779837_122779861	1.20953	UUGGUCC	ENSMUST00000106255.8|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)	ENSMUST00000106257.10|Cap1|ENSMUSG00000028656.15|CAP, adenylate cyclase-associated protein 1 (yeast)
mm39_v1_chr9_-_96634874_96634924	1.16904	UUGGUCC	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr6_+_57679621_57679644	1.15571	UUGGUCC	ENSMUST00000050077.15|Lancl2|ENSMUSG00000062190.13|LanC (bacterial lantibiotic synthetase component C)-like 2
mm39_v1_chr5_+_73648368_73648452	1.15347	UUGGUCC	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr7_+_92390811_92390923	1.15104	UUGGUCC	ENSMUST00000032879.15|Rab30|ENSMUSG00000030643.15|RAB30, member RAS oncogene family
mm39_v1_chr3_-_152045986_152046055	1.1408	UUGGUCC	ENSMUST00000199397.2|Miga1|ENSMUSG00000054942.14|mitoguardin 1	ENSMUST00000199334.5|Miga1|ENSMUSG00000054942.14|mitoguardin 1	ENSMUST00000068243.11|Miga1|ENSMUSG00000054942.14|mitoguardin 1	ENSMUST00000073089.13|Miga1|ENSMUSG00000054942.14|mitoguardin 1
mm39_v1_chr2_+_31840151_31840293	1.13313	UUGGUCC	ENSMUST00000001920.13|Aif1l|ENSMUSG00000001864.14|allograft inflammatory factor 1-like	ENSMUST00000151276.3|Aif1l|ENSMUSG00000001864.14|allograft inflammatory factor 1-like
mm39_v1_chrX_-_151151680_151151737	1.12345	UUGGUCC	ENSMUST00000070316.12|Gpr173|ENSMUSG00000056679.14|G-protein coupled receptor 173
mm39_v1_chr2_-_5719302_5719349	1.11953	UUGGUCC	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chr9_+_59485475_59485620	1.11837	UUGGUCC	ENSMUST00000118549.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000034840.10|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr11_+_5738480_5738560	1.09522	UUGGUCC	ENSMUST00000109845.8|Dbnl|ENSMUSG00000020476.15|drebrin-like	ENSMUST00000020769.14|Dbnl|ENSMUSG00000020476.15|drebrin-like	ENSMUST00000102928.5|Dbnl|ENSMUSG00000020476.15|drebrin-like
mm39_v1_chr4_+_127062924_127063023	1.06712	UUGGUCC	ENSMUST00000046659.14|Dlgap3|ENSMUSG00000042388.15|DLG associated protein 3
mm39_v1_chr14_-_70445086_70445124	1.04941	UUGGUCC	ENSMUST00000022682.6|Sorbs3|ENSMUSG00000022091.7|sorbin and SH3 domain containing 3
mm39_v1_chr7_+_139474612_139474770	1.04879	UUGGUCC	ENSMUST00000053445.18|Kndc1|ENSMUSG00000066129.18|kinase non-catalytic C-lobe domain (KIND) containing 1	ENSMUST00000121839.2|Kndc1|ENSMUSG00000066129.18|kinase non-catalytic C-lobe domain (KIND) containing 1
mm39_v1_chr19_-_7460600_7460651	1.04762	UUGGUCC	ENSMUST00000235593.2|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000088171.12|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000065304.13|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000025667.14|Rtn3|ENSMUSG00000024758.16|reticulon 3
mm39_v1_chr4_+_28813125_28813139	1.03864	UUGGUCC	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr2_-_63014622_63014681	1.03727	UUGGUCC	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr2_+_76505619_76505630	0.997037	UUGGUCC	ENSMUST00000111920.2|Plekha3|ENSMUSG00000002733.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm39_v1_chr14_+_5894220_5894254	0.986851	UUGGUCC	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr4_+_85123654_85123772	0.985018	UUGGUCC	ENSMUST00000030212.15|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107189.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107184.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2
mm39_v1_chr7_-_127494750_127494821	0.980244	UUGGUCC	ENSMUST00000033074.8|Vkorc1|ENSMUSG00000096145.3|vitamin K epoxide reductase complex, subunit 1
mm39_v1_chr2_+_109721189_109721226	0.97046	UUGGUCC	ENSMUST00000028583.8|Lin7c|ENSMUSG00000027162.8|lin-7 homolog C (C. elegans)
mm39_v1_chr18_-_38734389_38734468	0.962768	UUGGUCC	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr10_+_52293617_52293677	0.948486	UUGGUCC	ENSMUST00000023830.16|Nus1|ENSMUSG00000023068.17|NUS1 dehydrodolichyl diphosphate synthase subunit
mm39_v1_chr13_+_54651592_54651617	0.939044	UUGGUCC	ENSMUST00000121401.8|Simc1|ENSMUSG00000043183.19|SUMO-interacting motifs containing 1	ENSMUST00000118072.8|Simc1|ENSMUSG00000043183.19|SUMO-interacting motifs containing 1	ENSMUST00000159721.2|Simc1|ENSMUSG00000043183.19|SUMO-interacting motifs containing 1
mm39_v1_chr2_+_121697398_121697478	0.936279	UUGGUCC	ENSMUST00000110586.10|Golm2|ENSMUSG00000060227.16|golgi membrane protein 2	ENSMUST00000078752.10|Golm2|ENSMUSG00000060227.16|golgi membrane protein 2
mm39_v1_chr17_-_25789652_25789670	0.915258	UUGGUCC	ENSMUST00000025003.10|Sox8|ENSMUSG00000024176.11|SRY (sex determining region Y)-box 8	ENSMUST00000173447.2|Sox8|ENSMUSG00000024176.11|SRY (sex determining region Y)-box 8
mm39_v1_chr17_-_13159204_13159289	0.914387	UUGGUCC	ENSMUST00000043923.12|Acat3|ENSMUSG00000062480.13|acetyl-Coenzyme A acetyltransferase 3
mm39_v1_chr6_-_59001455_59001534	0.907128	UUGGUCC	ENSMUST00000089860.12|Fam13a|ENSMUSG00000037709.14|family with sequence similarity 13, member A
mm39_v1_chr14_+_30547541_30547595	0.903331	UUGGUCC	ENSMUST00000006701.8|Stimate|ENSMUSG00000006526.14|STIM activating enhancer
mm39_v1_chr11_+_94881861_94881916	0.89275	UUGGUCC	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr17_+_25407352_25407392	0.877679	UUGGUCC	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr5_+_32293145_32293201	0.874532	UUGGUCC	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr3_+_133942244_133942261	0.868686	UUGGUCC	ENSMUST00000181904.3|Cxxc4|ENSMUSG00000044365.16|CXXC finger 4
mm39_v1_chrX_+_60753074_60753124	0.859948	UUGGUCC	ENSMUST00000075983.6|Ldoc1|ENSMUSG00000057615.6|regulator of NFKB signaling
mm39_v1_chr17_-_72910822_72910822	0.843204	UUGGUCC	ENSMUST00000086639.6|Alk|ENSMUSG00000055471.8|anaplastic lymphoma kinase
mm39_v1_chr11_-_100628979_100629041	0.84182	UUGGUCC	ENSMUST00000155500.2|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000107364.8|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000019317.12|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family
mm39_v1_chr1_+_187730018_187730031	0.824631	UUGGUCC	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr11_-_85030761_85030864	0.786814	UUGGUCC	ENSMUST00000108075.9|Usp32|ENSMUSG00000000804.15|ubiquitin specific peptidase 32
mm39_v1_chrX_-_104973003_104973014	0.762156	UUGGUCC	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr6_-_126717590_126717644	0.749397	UUGGUCC	ENSMUST00000185333.2|Kcna6|ENSMUSG00000038077.8|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm39_v1_chr7_+_121666388_121666438	0.748304	UUGGUCC	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr1_-_65218217_65218340	0.746413	UUGGUCC	ENSMUST00000097709.11|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr3_+_96079642_96079653	0.70897	UUGGUCC	ENSMUST00000076372.5|Sf3b4|ENSMUSG00000068856.4|splicing factor 3b, subunit 4
mm39_v1_chr9_-_110572721_110572754	0.69936	UUGGUCC	ENSMUST00000166716.8|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr13_+_54769592_54769606	0.680246	UUGGUCC	ENSMUST00000126071.9|Faf2|ENSMUSG00000025873.17|Fas associated factor family member 2
mm39_v1_chr5_+_67417908_67418054	0.678844	UUGGUCC	ENSMUST00000037918.12|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000162543.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000161233.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33	ENSMUST00000160352.8|Tmem33|ENSMUSG00000037720.17|transmembrane protein 33
mm39_v1_chr11_+_32592707_32592875	0.663355	UUGGUCC	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr13_-_100969878_100969978	0.658265	UUGGUCC	ENSMUST00000067246.6|Slc30a5|ENSMUSG00000021629.11|solute carrier family 30 (zinc transporter), member 5
mm39_v1_chr7_-_45109262_45109312	0.656499	UUGGUCC	ENSMUST00000094434.13|Ftl1|ENSMUSG00000050708.17|ferritin light polypeptide 1
mm39_v1_chr5_+_102629240_102629257	0.630023	UUGGUCC	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chr16_+_32096267_32096295	0.625795	UUGGUCC	ENSMUST00000014218.15|Rnf168|ENSMUSG00000014074.18|ring finger protein 168	ENSMUST00000171474.2|Rnf168|ENSMUSG00000014074.18|ring finger protein 168
mm39_v1_chr19_-_4956626_4956661	0.621811	UUGGUCC	ENSMUST00000237085.2|Bbs1|ENSMUSG00000006464.10|Bardet-Biedl syndrome 1 (human)	ENSMUST00000053506.8|Bbs1|ENSMUSG00000006464.10|Bardet-Biedl syndrome 1 (human)	ENSMUST00000238170.2|Bbs1|ENSMUSG00000006464.10|Bardet-Biedl syndrome 1 (human)
mm39_v1_chr8_-_105169621_105169679	0.621405	UUGGUCC	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr11_+_100465730_100465808	0.620074	UUGGUCC	ENSMUST00000103120.5|Cnp|ENSMUSG00000006782.17|2',3'-cyclic nucleotide 3' phosphodiesterase
mm39_v1_chrX_+_100892981_100892998	0.602553	UUGGUCC	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr16_-_13977084_13977152	0.599478	UUGGUCC	ENSMUST00000090300.6|Marf1|ENSMUSG00000060657.9|meiosis regulator and mRNA stability 1
mm39_v1_chr2_-_130681978_130682070	0.597619	UUGGUCC	ENSMUST00000044766.15|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000138990.2|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000120316.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000110243.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr7_+_127344942_127344999	0.587701	UUGGUCC	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr11_+_68989763_68989811	0.563172	UUGGUCC	ENSMUST00000021271.14|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr4_+_11485945_11485975	0.559819	UUGGUCC	ENSMUST00000055372.14|Virma|ENSMUSG00000040720.16|vir like m6A methyltransferase associated	ENSMUST00000059914.13|Virma|ENSMUSG00000040720.16|vir like m6A methyltransferase associated
mm39_v1_chr11_+_87482971_87483055	0.547019	UUGGUCC	ENSMUST00000103179.10|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000092802.12|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000146871.8|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4
mm39_v1_chr12_+_100165694_100165773	0.542324	UUGGUCC	ENSMUST00000110082.11|Calm1|ENSMUSG00000001175.17|calmodulin 1
mm39_v1_chr9_+_44290787_44290810	0.52629	UUGGUCC	ENSMUST00000066601.13|Hyou1|ENSMUSG00000032115.15|hypoxia up-regulated 1
mm39_v1_chr18_-_32044877_32044877	0.520626	UUGGUCC	ENSMUST00000054984.8|Sft2d3|ENSMUSG00000044982.8|SFT2 domain containing 3
mm39_v1_chr13_-_98628509_98628509	0.515214	UUGGUCC	ENSMUST00000170205.2|Gm10320|ENSMUSG00000092116.2|predicted pseudogene 10320
mm39_v1_chr17_+_74796473_74796570	0.497492	UUGGUCC	ENSMUST00000024873.7|Yipf4|ENSMUSG00000024072.10|Yip1 domain family, member 4
mm39_v1_chr9_-_96993169_96993214	0.493265	UUGGUCC	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr16_-_56537808_56537820	0.492593	UUGGUCC	ENSMUST00000065515.14|Tfg|ENSMUSG00000022757.20|Trk-fused gene
mm39_v1_chr10_-_83484576_83484602	0.48305	UUGGUCC	ENSMUST00000020500.14|Appl2|ENSMUSG00000020263.15|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
mm39_v1_chr3_-_89177796_89177877	0.481136	UUGGUCC	ENSMUST00000107460.8|Slc50a1|ENSMUSG00000027953.14|solute carrier family 50 (sugar transporter), member 1	ENSMUST00000029565.11|Slc50a1|ENSMUSG00000027953.14|solute carrier family 50 (sugar transporter), member 1	ENSMUST00000130230.2|Slc50a1|ENSMUSG00000027953.14|solute carrier family 50 (sugar transporter), member 1
mm39_v1_chr5_-_36954064_36954116	0.476928	UUGGUCC	ENSMUST00000068795.4|Mrfap1|ENSMUSG00000055302.6|Morf4 family associated protein 1
mm39_v1_chr12_+_80509869_80509974	0.472281	UUGGUCC	ENSMUST00000038185.10|Exd2|ENSMUSG00000032705.10|exonuclease 3'-5' domain containing 2
mm39_v1_chr19_+_29078765_29078776	0.449268	UUGGUCC	ENSMUST00000064393.6|Rcl1|ENSMUSG00000024785.8|RNA terminal phosphate cyclase-like 1	ENSMUST00000235900.2|Rcl1|ENSMUSG00000024785.8|RNA terminal phosphate cyclase-like 1
mm39_v1_chr16_-_10131804_10131832	0.443037	UUGGUCC	ENSMUST00000078357.5|Emp2|ENSMUSG00000022505.10|epithelial membrane protein 2
mm39_v1_chrX_+_139565657_139565821	0.420766	UUGGUCC	ENSMUST00000112990.8|Mid2|ENSMUSG00000000266.12|midline 2	ENSMUST00000112988.8|Mid2|ENSMUSG00000000266.12|midline 2
mm39_v1_chrX_+_128650579_128650725	0.414028	UUGGUCC	ENSMUST00000113320.3|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2
mm39_v1_chr19_-_46561532_46561646	0.404923	UUGGUCC	ENSMUST00000026009.10|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3	ENSMUST00000236255.2|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3
mm39_v1_chr9_-_78389006_78389033	0.400892	UUGGUCC	ENSMUST00000042235.15|Eef1a1|ENSMUSG00000037742.15|eukaryotic translation elongation factor 1 alpha 1
mm39_v1_chr13_+_31990604_31990633	0.400381	UUGGUCC	ENSMUST00000062292.5|Foxc1|ENSMUSG00000050295.5|forkhead box C1
mm39_v1_chr1_+_131755715_131755757	0.389495	UUGGUCC	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr6_+_56691875_56691937	0.381926	UUGGUCC	ENSMUST00000031805.11|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated	ENSMUST00000177249.3|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated
mm39_v1_chrX_+_132959905_132959988	0.37749	UUGGUCC	ENSMUST00000113287.8|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2	ENSMUST00000033609.9|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2	ENSMUST00000113286.8|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2
mm39_v1_chr2_-_160714473_160714542	0.35185	UUGGUCC	ENSMUST00000103111.9|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr5_+_36050663_36050817	0.348008	UUGGUCC	ENSMUST00000064571.11|Afap1|ENSMUSG00000029094.13|actin filament associated protein 1
mm39_v1_chr9_+_98868418_98868465	0.347151	UUGGUCC	ENSMUST00000035038.8|Faim|ENSMUSG00000032463.11|Fas apoptotic inhibitory molecule	ENSMUST00000112911.9|Faim|ENSMUSG00000032463.11|Fas apoptotic inhibitory molecule
mm39_v1_chr14_+_55120875_55120972	0.342179	UUGGUCC	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr2_+_158251761_158251783	0.335922	UUGGUCC	ENSMUST00000109486.9|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)	ENSMUST00000046274.12|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)
mm39_v1_chr5_-_140634773_140634807	0.330452	UUGGUCC	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr12_-_75782502_75782511	0.320821	UUGGUCC	ENSMUST00000021450.6|Sgpp1|ENSMUSG00000021054.7|sphingosine-1-phosphate phosphatase 1
mm39_v1_chr6_-_53045546_53045640	0.3177	UUGGUCC	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr4_-_114844417_114844453	0.316973	UUGGUCC	ENSMUST00000030491.9|Cmpk1|ENSMUSG00000028719.9|cytidine monophosphate (UMP-CMP) kinase 1
mm39_v1_chr8_+_84334805_84334827	0.311339	UUGGUCC	ENSMUST00000005620.10|Dnajb1|ENSMUSG00000005483.11|DnaJ heat shock protein family (Hsp40) member B1
mm39_v1_chr11_-_86884507_86884538	0.308355	UUGGUCC	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr3_-_87081939_87082054	0.298576	UUGGUCC	ENSMUST00000159976.8|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1	ENSMUST00000107618.9|Kirrel|ENSMUSG00000041734.16|kirre like nephrin family adhesion molecule 1
mm39_v1_chr4_+_99603877_99603919	0.295966	UUGGUCC	ENSMUST00000097961.9|Alg6|ENSMUSG00000073792.12|asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	ENSMUST00000107004.9|Alg6|ENSMUSG00000073792.12|asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	ENSMUST00000139799.3|Alg6|ENSMUSG00000073792.12|asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
mm39_v1_chr11_-_5331734_5331745	0.294237	UUGGUCC	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr6_-_90787100_90787142	0.287782	UUGGUCC	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr4_+_136013372_136013425	0.28144	UUGGUCC	ENSMUST00000069195.5|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46	ENSMUST00000130658.2|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr18_-_35760260_35760302	0.278209	UUGGUCC	ENSMUST00000025212.8|Slc23a1|ENSMUSG00000024354.14|solute carrier family 23 (nucleobase transporters), member 1
mm39_v1_chrX_+_7628891_7628934	0.271831	UUGGUCC	ENSMUST00000077680.10|Tfe3|ENSMUSG00000000134.18|transcription factor E3	ENSMUST00000079542.13|Tfe3|ENSMUSG00000000134.18|transcription factor E3	ENSMUST00000115679.8|Tfe3|ENSMUSG00000000134.18|transcription factor E3	ENSMUST00000137467.8|Tfe3|ENSMUSG00000000134.18|transcription factor E3
mm39_v1_chr11_+_16702203_16702215	0.268784	UUGGUCC	ENSMUST00000102884.10|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor	ENSMUST00000020329.13|Egfr|ENSMUSG00000020122.17|epidermal growth factor receptor
mm39_v1_chr1_-_59709971_59709993	0.261392	UUGGUCC	ENSMUST00000091374.9|Sumo1|ENSMUSG00000026021.16|small ubiquitin-like modifier 1
mm39_v1_chr11_+_75570085_75570167	0.253827	UUGGUCC	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chr4_-_129566505_129566567	0.25142	UUGGUCC	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr2_-_166555678_166555752	0.24657	UUGGUCC	ENSMUST00000036719.12|Prex1|ENSMUSG00000039621.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm39_v1_chr8_+_121842902_121842916	0.242981	UUGGUCC	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chrX_-_73129195_73129296	0.231025	UUGGUCC	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr5_-_124387812_124387845	0.223949	UUGGUCC	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr4_+_59805829_59805914	0.213158	UUGGUCC	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr4_-_82423985_82424044	0.18674	UUGGUCC	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr15_+_76423012_76423076	0.171515	UUGGUCC	ENSMUST00000023220.10|Slc52a2|ENSMUSG00000022560.10|solute carrier protein 52, member 2
mm39_v1_chr15_-_76702170_76702375	0.166904	UUGGUCC	ENSMUST00000175843.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000177026.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176736.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000036176.16|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176219.9|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239134.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239003.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000077821.10|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39
mm39_v1_chr2_-_48839276_48839288	0.159913	UUGGUCC	ENSMUST00000028098.11|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4
mm39_v1_chr2_-_152673585_152673648	0.156854	UUGGUCC	ENSMUST00000156688.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000007803.12|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr8_-_80784619_80784646	0.143777	UUGGUCC	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr11_-_97635484_97635571	0.128273	UUGGUCC	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr5_+_142615292_142615348	0.123605	UUGGUCC	ENSMUST00000036872.16|Wipi2|ENSMUSG00000029578.16|WD repeat domain, phosphoinositide interacting 2	ENSMUST00000110778.2|Wipi2|ENSMUSG00000029578.16|WD repeat domain, phosphoinositide interacting 2
mm39_v1_chr1_-_14380418_14380463	0.116405	UUGGUCC	ENSMUST00000027066.13|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000168081.9|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr14_-_79718890_79718960	0.114325	UUGGUCC	ENSMUST00000022601.7|Wbp4|ENSMUSG00000022023.7|WW domain binding protein 4
mm39_v1_chr8_-_3329605_3329622	0.104797	UUGGUCC	ENSMUST00000091291.5|Insr|ENSMUSG00000005534.11|insulin receptor
mm39_v1_chr11_+_28803188_28803259	0.0953376	UUGGUCC	ENSMUST00000020759.12|Efemp1|ENSMUSG00000020467.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 1
mm39_v1_chr17_-_66384017_66384086	0.0803217	UUGGUCC	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr8_-_4375320_4375413	0.0748594	UUGGUCC	ENSMUST00000098950.6|Elavl1|ENSMUSG00000040028.11|ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
mm39_v1_chr11_+_68979332_68979380	0.0714857	UUGGUCC	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr9_-_56151334_56151382	0.0653523	UUGGUCC	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr1_+_91729175_91729210	0.0625799	UUGGUCC	ENSMUST00000007949.4|Twist2|ENSMUSG00000007805.5|twist basic helix-loop-helix transcription factor 2	ENSMUST00000186075.2|Twist2|ENSMUSG00000007805.5|twist basic helix-loop-helix transcription factor 2
mm39_v1_chr2_-_147028309_147028331	0.0615531	UUGGUCC	ENSMUST00000067075.7|Nkx2-2|ENSMUSG00000027434.12|NK2 homeobox 2
mm39_v1_chr6_+_63232955_63233024	0.0580687	UUGGUCC	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr8_+_41315419_41315472	0.0500752	UUGGUCC	ENSMUST00000098816.10|Slc7a2|ENSMUSG00000031596.16|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	ENSMUST00000057784.15|Slc7a2|ENSMUSG00000031596.16|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm39_v1_chr7_-_18883113_18883216	0.0489612	UUGGUCC	ENSMUST00000032566.3|Qpctl|ENSMUSG00000030407.3|glutaminyl-peptide cyclotransferase-like
mm39_v1_chr6_+_88061464_88061509	0.0479694	UUGGUCC	ENSMUST00000032143.8|Rpn1|ENSMUSG00000030062.8|ribophorin I
mm39_v1_chr7_+_138828391_138828476	0.0411511	UUGGUCC	ENSMUST00000093993.5|Pwwp2b|ENSMUSG00000060260.14|PWWP domain containing 2B	ENSMUST00000172136.9|Pwwp2b|ENSMUSG00000060260.14|PWWP domain containing 2B
mm39_v1_chr9_-_20726344_20726365	0.0371501	UUGGUCC	ENSMUST00000004201.8|Col5a3|ENSMUSG00000004098.8|collagen, type V, alpha 3
mm39_v1_chr1_-_152642032_152642069	0.0367949	UUGGUCC	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr11_+_98754434_98754472	0.0339973	UUGGUCC	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chrX_+_150304137_150304203	0.0303517	UUGGUCC	ENSMUST00000112670.8|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046962.11|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000112668.9|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046950.13|Phf8|ENSMUSG00000041229.16|PHD finger protein 8
mm39_v1_chr5_+_120569764_120569764	0.0285458	UUGGUCC	ENSMUST00000031591.10|Lhx5|ENSMUSG00000029595.10|LIM homeobox protein 5
mm39_v1_chr5_+_65694552_65694576	0.021376	UUGGUCC	ENSMUST00000142407.8|Ube2k|ENSMUSG00000029203.17|ubiquitin-conjugating enzyme E2K
mm39_v1_chr1_-_106724417_106724458	0.020245	UUGGUCC	ENSMUST00000094646.6|Vps4b|ENSMUSG00000009907.18|vacuolar protein sorting 4B
mm39_v1_chr11_-_20691440_20691545	0.00179023	UUGGUCC	ENSMUST00000177543.8|Aftph|ENSMUSG00000049659.16|aftiphilin
