mm39_v1_chr15_+_75027089_75027179	5.62854	Zkscan1	ENSMUST00000190262.2|Ly6g|ENSMUSG00000022582.5|lymphocyte antigen 6 complex, locus G
mm39_v1_chr17_-_33937565_33937664	5.15289	Zkscan1	ENSMUST00000174040.2|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000173015.8|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000066121.13|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000186022.7|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000173329.8|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2	ENSMUST00000172767.9|Marchf2|ENSMUSG00000079557.12|membrane associated ring-CH-type finger 2
mm39_v1_chr19_-_61216834_61216882	4.9009	Zkscan1	ENSMUST00000076046.7|Csf2ra|ENSMUSG00000059326.8|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
mm39_v1_chr10_+_79716876_79716893	4.58243	Zkscan1	ENSMUST00000166201.2|Prtn3|ENSMUSG00000057729.13|proteinase 3
mm39_v1_chr3_-_88291740_88291778	4.57135	Zkscan1	ENSMUST00000076048.5|Bglap|ENSMUSG00000074483.3|bone gamma carboxyglutamate protein
mm39_v1_chr8_-_72178340_72178378	4.39825	Zkscan1	ENSMUST00000153800.8|Fcho1|ENSMUSG00000070000.14|FCH domain only 1	ENSMUST00000146100.8|Fcho1|ENSMUSG00000070000.14|FCH domain only 1
mm39_v1_chr3_-_88286006_88286066	4.39803	Zkscan1	ENSMUST00000098956.3|Bglap2|ENSMUSG00000074486.3|bone gamma-carboxyglutamate protein 2
mm39_v1_chr15_-_74983786_74983825	3.78779	Zkscan1	ENSMUST00000191451.2|Ly6c2|ENSMUSG00000022584.15|lymphocyte antigen 6 complex, locus C2	ENSMUST00000100542.10|Ly6c2|ENSMUSG00000022584.15|lymphocyte antigen 6 complex, locus C2
mm39_v1_chr2_+_31135813_31135913	3.77208	Zkscan1	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr17_+_44114894_44114932	3.6598	Zkscan1	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr15_-_82505132_82505147	3.30109	Zkscan1	ENSMUST00000109515.3|Cyp2d34|ENSMUSG00000094559.3|cytochrome P450, family 2, subfamily d, polypeptide 34
mm39_v1_chr2_+_84564394_84564451	3.13543	Zkscan1	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr15_+_83664196_83664288	2.95065	Zkscan1	ENSMUST00000046168.12|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1
mm39_v1_chr12_-_76865148_76865169	2.9383	Zkscan1	ENSMUST00000118604.8|Rab15|ENSMUSG00000021062.16|RAB15, member RAS oncogene family
mm39_v1_chr12_+_112586465_112586491	2.88733	Zkscan1	ENSMUST00000021726.8|Adssl1|ENSMUSG00000011148.15|adenylosuccinate synthetase like 1
mm39_v1_chr6_-_126717590_126717644	2.88589	Zkscan1	ENSMUST00000185333.2|Kcna6|ENSMUSG00000038077.8|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm39_v1_chr6_-_126717114_126717286	2.83467	Zkscan1	ENSMUST00000112242.2|Kcna6|ENSMUSG00000038077.8|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm39_v1_chr8_+_73373304_73373353	2.8336	Zkscan1	ENSMUST00000093427.11|Nwd1|ENSMUSG00000048148.19|NACHT and WD repeat domain containing 1
mm39_v1_chr8_+_73373356_73373409	2.79723	Zkscan1	ENSMUST00000161254.9|Nwd1|ENSMUSG00000048148.19|NACHT and WD repeat domain containing 1
mm39_v1_chr11_-_61344818_61344932	2.74038	Zkscan1	ENSMUST00000060255.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000054927.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000102661.4|Rnf112|ENSMUSG00000010086.18|ring finger protein 112
mm39_v1_chr10_+_126836578_126836621	2.60331	Zkscan1	ENSMUST00000026500.12|Avil|ENSMUSG00000025432.12|advillin	ENSMUST00000142698.8|Avil|ENSMUSG00000025432.12|advillin
mm39_v1_chr12_+_112586501_112586527	2.58236	Zkscan1	ENSMUST00000180015.9|Adssl1|ENSMUSG00000011148.15|adenylosuccinate synthetase like 1
mm39_v1_chr15_-_74855264_74855280	2.47528	Zkscan1	ENSMUST00000023250.11|Ly6i|ENSMUSG00000022586.12|lymphocyte antigen 6 complex, locus I	ENSMUST00000166694.2|Ly6i|ENSMUSG00000022586.12|lymphocyte antigen 6 complex, locus I
mm39_v1_chr5_-_8417982_8418106	2.41349	Zkscan1	ENSMUST00000088761.11|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115386.8|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000050166.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000046838.14|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115388.9|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000088744.12|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22	ENSMUST00000115385.2|Adam22|ENSMUSG00000040537.18|a disintegrin and metallopeptidase domain 22
mm39_v1_chr15_-_79048674_79048696	2.38753	Zkscan1	ENSMUST00000230261.2|Sox10|ENSMUSG00000033006.11|SRY (sex determining region Y)-box 10	ENSMUST00000040019.5|Sox10|ENSMUSG00000033006.11|SRY (sex determining region Y)-box 10
mm39_v1_chr15_+_83664175_83664189	2.36133	Zkscan1	ENSMUST00000163723.8|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1
mm39_v1_chr4_+_42922253_42922268	2.33458	Zkscan1	ENSMUST00000139100.2|Phf24|ENSMUSG00000036062.14|PHD finger protein 24
mm39_v1_chr11_+_42310557_42310612	2.30552	Zkscan1	ENSMUST00000007797.10|Gabrb2|ENSMUSG00000007653.13|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm39_v1_chr9_-_103357564_103357619	2.06722	Zkscan1	ENSMUST00000124310.5|Bfsp2|ENSMUSG00000032556.12|beaded filament structural protein 2, phakinin
mm39_v1_chr12_-_79054050_79054133	2.02481	Zkscan1	ENSMUST00000056660.13|Tmem229b|ENSMUSG00000046157.14|transmembrane protein 229B	ENSMUST00000174721.8|Tmem229b|ENSMUSG00000046157.14|transmembrane protein 229B
mm39_v1_chr15_-_74920518_74920690	1.9977	Zkscan1	ENSMUST00000185372.2|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000187347.7|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000188845.7|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000185200.7|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000179762.8|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000191216.7|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1	ENSMUST00000065408.16|Ly6c1|ENSMUSG00000079018.11|lymphocyte antigen 6 complex, locus C1
mm39_v1_chr7_-_97811525_97811575	1.98402	Zkscan1	ENSMUST00000107112.2|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chr10_-_81360059_81360093	1.96879	Zkscan1	ENSMUST00000043709.8|Gna15|ENSMUSG00000034792.9|guanine nucleotide binding protein, alpha 15
mm39_v1_chr7_+_43959637_43959677	1.86258	Zkscan1	ENSMUST00000107938.8|Shank1|ENSMUSG00000038738.16|SH3 and multiple ankyrin repeat domains 1
mm39_v1_chr9_+_106245792_106245839	1.8557	Zkscan1	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr11_+_104468107_104468213	1.83756	Zkscan1	ENSMUST00000106956.10|Myl4|ENSMUSG00000061086.13|myosin, light polypeptide 4
mm39_v1_chr17_+_34258411_34258455	1.77156	Zkscan1	ENSMUST00000087497.11|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000131134.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000235819.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114255.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114252.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000237989.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2
mm39_v1_chr2_-_91795910_91795945	1.73359	Zkscan1	ENSMUST00000239257.2|Dgkz|ENSMUSG00000040479.13|diacylglycerol kinase zeta
mm39_v1_chr9_+_118881838_118881870	1.6342	Zkscan1	ENSMUST00000051386.13|Vill|ENSMUSG00000038775.15|villin-like	ENSMUST00000074734.13|Vill|ENSMUSG00000038775.15|villin-like
mm39_v1_chr7_+_28834276_28834323	1.58078	Zkscan1	ENSMUST00000161522.8|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000204845.3|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000205027.3|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000204194.3|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000203070.3|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4	ENSMUST00000203380.3|Rasgrp4|ENSMUSG00000030589.16|RAS guanyl releasing protein 4
mm39_v1_chr18_-_80133177_80133177	1.53633	Zkscan1	ENSMUST00000178391.2|Gm21886|ENSMUSG00000096597.2|predicted gene, 21886
mm39_v1_chr9_+_62249341_62249368	1.52565	Zkscan1	ENSMUST00000135395.8|Anp32a|ENSMUSG00000032249.15|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm39_v1_chr15_-_82291372_82291404	1.51149	Zkscan1	ENSMUST00000230198.2|Cyp2d10|ENSMUSG00000094806.3|cytochrome P450, family 2, subfamily d, polypeptide 10	ENSMUST00000230248.2|Cyp2d10|ENSMUSG00000094806.3|cytochrome P450, family 2, subfamily d, polypeptide 10	ENSMUST00000072776.5|Cyp2d10|ENSMUSG00000094806.3|cytochrome P450, family 2, subfamily d, polypeptide 10	ENSMUST00000229911.2|Cyp2d10|ENSMUSG00000094806.3|cytochrome P450, family 2, subfamily d, polypeptide 10
mm39_v1_chr9_-_106533279_106533295	1.49805	Zkscan1	ENSMUST00000023959.13|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2	ENSMUST00000201681.2|Grm2|ENSMUSG00000023192.13|glutamate receptor, metabotropic 2
mm39_v1_chr5_+_110248276_110248293	1.49655	Zkscan1	ENSMUST00000141066.8|Plcxd1|ENSMUSG00000064247.15|phosphatidylinositol-specific phospholipase C, X domain containing 1
mm39_v1_chr7_+_111825063_111825112	1.46894	Zkscan1	ENSMUST00000050149.12|Mical2|ENSMUSG00000038244.15|microtubule associated monooxygenase, calponin and LIM domain containing 2
mm39_v1_chr10_+_90665270_90665343	1.43972	Zkscan1	ENSMUST00000182202.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B	ENSMUST00000182966.8|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr4_-_155870321_155870337	1.42891	Zkscan1	ENSMUST00000097742.3|Tmem88b|ENSMUSG00000073680.3|transmembrane protein 88B
mm39_v1_chr15_-_78456898_78456988	1.38983	Zkscan1	ENSMUST00000043214.8|Rac2|ENSMUSG00000033220.8|Rac family small GTPase 2
mm39_v1_chr16_-_17019352_17019372	1.33072	Zkscan1	ENSMUST00000090192.12|Ube2l3|ENSMUSG00000038965.18|ubiquitin-conjugating enzyme E2L 3
mm39_v1_chr7_-_126399778_126399923	1.32068	Zkscan1	ENSMUST00000141355.4|Aldoa|ENSMUSG00000030695.17|aldolase A, fructose-bisphosphate
mm39_v1_chr10_+_90665639_90665653	1.28977	Zkscan1	ENSMUST00000179337.9|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr10_+_90665399_90665428	1.28345	Zkscan1	ENSMUST00000179694.9|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr2_-_167032068_167032093	1.2703	Zkscan1	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr6_-_144993451_144993579	1.25984	Zkscan1	ENSMUST00000123930.8|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr1_+_171668173_171668208	1.25633	Zkscan1	ENSMUST00000136479.8|Cd84|ENSMUSG00000038147.15|CD84 antigen
mm39_v1_chr18_-_61147272_61147334	1.25612	Zkscan1	ENSMUST00000025520.10|Slc6a7|ENSMUSG00000052026.9|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm39_v1_chr9_+_51124983_51125008	1.23867	Zkscan1	ENSMUST00000034554.9|Pou2af1|ENSMUSG00000032053.9|POU domain, class 2, associating factor 1
mm39_v1_chr2_+_172235702_172235750	1.20446	Zkscan1	ENSMUST00000099061.9|Cass4|ENSMUSG00000074570.15|Cas scaffolding protein family member 4	ENSMUST00000103073.9|Cass4|ENSMUSG00000074570.15|Cas scaffolding protein family member 4
mm39_v1_chr15_+_16778187_16778187	1.18347	Zkscan1	ENSMUST00000026432.8|Cdh9|ENSMUSG00000025370.8|cadherin 9
mm39_v1_chr2_-_104241358_104241358	1.16796	Zkscan1	ENSMUST00000230671.2|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene
mm39_v1_chr4_+_20042045_20042107	1.16059	Zkscan1	ENSMUST00000098242.4|Ggh|ENSMUSG00000073987.5|gamma-glutamyl hydrolase
mm39_v1_chrX_-_48886577_48886632	1.12769	Zkscan1	ENSMUST00000033442.14|Igsf1|ENSMUSG00000031111.17|immunoglobulin superfamily, member 1	ENSMUST00000114891.2|Igsf1|ENSMUSG00000031111.17|immunoglobulin superfamily, member 1
mm39_v1_chr15_+_82439273_82439315	1.12722	Zkscan1	ENSMUST00000229103.2|Cyp2d12|ENSMUSG00000096852.3|cytochrome P450, family 2, subfamily d, polypeptide 12	ENSMUST00000068861.8|Cyp2d12|ENSMUSG00000096852.3|cytochrome P450, family 2, subfamily d, polypeptide 12	ENSMUST00000229904.2|Cyp2d12|ENSMUSG00000096852.3|cytochrome P450, family 2, subfamily d, polypeptide 12
mm39_v1_chr10_+_80134917_80134960	1.11822	Zkscan1	ENSMUST00000154212.8|Apc2|ENSMUSG00000020135.14|APC regulator of WNT signaling pathway 2
mm39_v1_chr11_+_19874354_19874375	1.113	Zkscan1	ENSMUST00000093299.13|Spred2|ENSMUSG00000045671.18|sprouty-related EVH1 domain containing 2
mm39_v1_chr5_+_125518609_125518678	1.10332	Zkscan1	ENSMUST00000049040.14|Bri3bp|ENSMUSG00000037905.14|Bri3 binding protein
mm39_v1_chr15_-_74869684_74869880	1.09613	Zkscan1	ENSMUST00000190188.2|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A	ENSMUST00000189068.7|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A	ENSMUST00000186526.7|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A	ENSMUST00000187171.2|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A	ENSMUST00000187994.7|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A
mm39_v1_chr9_+_62249177_62249208	1.0718	Zkscan1	ENSMUST00000128636.8|Anp32a|ENSMUSG00000032249.15|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm39_v1_chr6_-_144993362_144993387	1.06449	Zkscan1	ENSMUST00000149769.6|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr2_-_106804679_106804810	1.02831	Zkscan1	ENSMUST00000028536.13|Arl14ep|ENSMUSG00000027122.16|ADP-ribosylation factor-like 14 effector protein
mm39_v1_chr16_-_10265204_10265233	1.00949	Zkscan1	ENSMUST00000051118.7|Tvp23a|ENSMUSG00000050908.13|trans-golgi network vesicle protein 23A
mm39_v1_chr9_+_62248611_62248672	1.00398	Zkscan1	ENSMUST00000085519.13|Anp32a|ENSMUSG00000032249.15|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm39_v1_chr6_+_57234937_57234937	0.998203	Zkscan1	ENSMUST00000228297.2|Vmn1r15|ENSMUSG00000115199.2|vomeronasal 1 receptor 15
mm39_v1_chr3_+_62245765_62245765	0.958812	Zkscan1	ENSMUST00000079300.13|Arhgef26|ENSMUSG00000036885.15|Rho guanine nucleotide exchange factor (GEF) 26
mm39_v1_chr5_-_131567526_131567557	0.956812	Zkscan1	ENSMUST00000161374.8|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr1_+_50966670_50966702	0.943204	Zkscan1	ENSMUST00000081851.4|Tmeff2|ENSMUSG00000026109.15|transmembrane protein with EGF-like and two follistatin-like domains 2
mm39_v1_chr4_-_97472844_97472880	0.93847	Zkscan1	ENSMUST00000107067.8|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene	ENSMUST00000107068.9|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene
mm39_v1_chr17_+_47604995_47604995	0.926515	Zkscan1	ENSMUST00000190020.4|Trerf1|ENSMUSG00000064043.16|transcriptional regulating factor 1
mm39_v1_chr4_-_140805613_140805668	0.916764	Zkscan1	ENSMUST00000030760.15|Necap2|ENSMUSG00000028923.15|NECAP endocytosis associated 2
mm39_v1_chr11_-_47270201_47270349	0.906295	Zkscan1	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr17_-_54153367_54153394	0.895193	Zkscan1	ENSMUST00000023886.7|Sult1c2|ENSMUSG00000023122.7|sulfotransferase family, cytosolic, 1C, member 2
mm39_v1_chr7_+_15909010_15909064	0.883659	Zkscan1	ENSMUST00000176342.8|Meis3|ENSMUSG00000041420.19|Meis homeobox 3	ENSMUST00000177540.8|Meis3|ENSMUSG00000041420.19|Meis homeobox 3
mm39_v1_chr12_-_101943134_101943323	0.840654	Zkscan1	ENSMUST00000221227.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr15_-_74869483_74869483	0.83587	Zkscan1	ENSMUST00000023248.13|Ly6a|ENSMUSG00000075602.11|lymphocyte antigen 6 complex, locus A
mm39_v1_chr10_-_79624758_79624819	0.820517	Zkscan1	ENSMUST00000020573.13|Prss57|ENSMUSG00000020323.15|protease, serine 57
mm39_v1_chr19_-_10502468_10502545	0.812912	Zkscan1	ENSMUST00000025570.8|Sdhaf2|ENSMUSG00000024668.9|succinate dehydrogenase complex assembly factor 2	ENSMUST00000236455.2|Sdhaf2|ENSMUSG00000024668.9|succinate dehydrogenase complex assembly factor 2
mm39_v1_chr17_+_28794615_28794717	0.80895	Zkscan1	ENSMUST00000232862.2|Lhfpl5|ENSMUSG00000062252.10|lipoma HMGIC fusion partner-like 5	ENSMUST00000080780.8|Lhfpl5|ENSMUSG00000062252.10|lipoma HMGIC fusion partner-like 5
mm39_v1_chr18_-_31742946_31742982	0.801326	Zkscan1	ENSMUST00000060396.7|Slc25a46|ENSMUSG00000024259.10|solute carrier family 25, member 46
mm39_v1_chr12_-_17061545_17061563	0.779184	Zkscan1	ENSMUST00000190691.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr2_+_172235820_172235884	0.760264	Zkscan1	ENSMUST00000109136.3|Cass4|ENSMUSG00000074570.15|Cas scaffolding protein family member 4	ENSMUST00000228775.2|Cass4|ENSMUSG00000074570.15|Cas scaffolding protein family member 4
mm39_v1_chr5_+_64969679_64969727	0.725813	Zkscan1	ENSMUST00000166409.6|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)	ENSMUST00000197879.2|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr4_+_73931679_73931931	0.713846	Zkscan1	ENSMUST00000098006.9|Frmd3|ENSMUSG00000049122.18|FERM domain containing 3	ENSMUST00000084474.6|Frmd3|ENSMUSG00000049122.18|FERM domain containing 3
mm39_v1_chr18_+_61238908_61238959	0.706193	Zkscan1	ENSMUST00000115268.4|Csf1r|ENSMUSG00000024621.17|colony stimulating factor 1 receptor
mm39_v1_chr4_+_103476777_103476862	0.704798	Zkscan1	ENSMUST00000106827.8|Dab1|ENSMUSG00000028519.17|disabled 1
mm39_v1_chr7_-_132415257_132415400	0.697935	Zkscan1	ENSMUST00000097999.9|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr19_-_10502546_10502562	0.683119	Zkscan1	ENSMUST00000237827.2|Sdhaf2|ENSMUSG00000024668.9|succinate dehydrogenase complex assembly factor 2
mm39_v1_chr4_+_101276474_101276547	0.680735	Zkscan1	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
mm39_v1_chr11_+_43046476_43046545	0.67206	Zkscan1	ENSMUST00000238415.2|Atp10b|ENSMUSG00000055415.9|ATPase, class V, type 10B
mm39_v1_chr2_-_121381832_121381861	0.664563	Zkscan1	ENSMUST00000212518.2|Frmd5|ENSMUSG00000027238.18|FERM domain containing 5
mm39_v1_chr4_-_134642286_134642335	0.662258	Zkscan1	ENSMUST00000105863.2|Tmem50a|ENSMUSG00000028822.12|transmembrane protein 50A	ENSMUST00000030626.12|Tmem50a|ENSMUSG00000028822.12|transmembrane protein 50A
mm39_v1_chr11_+_19874403_19874458	0.623824	Zkscan1	ENSMUST00000093298.12|Spred2|ENSMUSG00000045671.18|sprouty-related EVH1 domain containing 2
mm39_v1_chr1_-_57008986_57009031	0.612285	Zkscan1	ENSMUST00000176759.2|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2	ENSMUST00000177424.2|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr2_-_127571836_127571856	0.607983	Zkscan1	ENSMUST00000028856.3|Mall|ENSMUSG00000027377.3|mal, T cell differentiation protein-like
mm39_v1_chr4_+_126156118_126156173	0.583691	Zkscan1	ENSMUST00000030660.9|Trappc3|ENSMUSG00000028847.9|trafficking protein particle complex 3
mm39_v1_chr8_+_85676489_85676500	0.578199	Zkscan1	ENSMUST00000121880.8|Rtbdn|ENSMUSG00000048617.17|retbindin
mm39_v1_chr17_+_29042640_29042681	0.551993	Zkscan1	ENSMUST00000233088.2|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3	ENSMUST00000233182.2|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3	ENSMUST00000233520.2|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3
mm39_v1_chr2_+_134627987_134628090	0.546866	Zkscan1	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr8_-_4375320_4375413	0.540561	Zkscan1	ENSMUST00000098950.6|Elavl1|ENSMUSG00000040028.11|ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
mm39_v1_chr17_+_33743144_33743218	0.520048	Zkscan1	ENSMUST00000087623.13|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234715.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	ENSMUST00000234497.2|Adamts10|ENSMUSG00000024299.18|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm39_v1_chr11_+_53992054_53992085	0.506879	Zkscan1	ENSMUST00000135653.8|P4ha2|ENSMUSG00000018906.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide
mm39_v1_chr5_-_134668152_134668344	0.495867	Zkscan1	ENSMUST00000036125.10|Eif4h|ENSMUSG00000040731.14|eukaryotic translation initiation factor 4H	ENSMUST00000202622.4|Eif4h|ENSMUSG00000040731.14|eukaryotic translation initiation factor 4H
mm39_v1_chr8_-_70169500_70169598	0.495211	Zkscan1	ENSMUST00000238408.2|Zfp869|ENSMUSG00000054648.9|zinc finger protein 869	ENSMUST00000238418.2|Zfp869|ENSMUSG00000054648.9|zinc finger protein 869	ENSMUST00000238753.2|Zfp869|ENSMUSG00000054648.9|zinc finger protein 869
mm39_v1_chr12_+_88327607_88327659	0.494372	Zkscan1	ENSMUST00000166940.3|Adck1|ENSMUSG00000021044.16|aarF domain containing kinase 1
mm39_v1_chr4_-_63414188_63414270	0.477258	Zkscan1	ENSMUST00000063650.10|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000102867.8|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000107393.8|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000084510.8|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000095038.8|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000119294.8|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000095037.2|Whrn|ENSMUSG00000039137.19|whirlin	ENSMUST00000063672.10|Whrn|ENSMUSG00000039137.19|whirlin
mm39_v1_chr8_+_95712151_95712197	0.469907	Zkscan1	ENSMUST00000212799.2|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr4_+_141171965_141172025	0.463375	Zkscan1	ENSMUST00000006377.13|Zbtb17|ENSMUSG00000006215.13|zinc finger and BTB domain containing 17
mm39_v1_chr5_-_22549688_22549708	0.45849	Zkscan1	ENSMUST00000062372.14|Reln|ENSMUSG00000042453.15|reelin	ENSMUST00000161356.8|Reln|ENSMUSG00000042453.15|reelin
mm39_v1_chr12_+_116369017_116369083	0.456899	Zkscan1	ENSMUST00000084828.5|Ncapg2|ENSMUSG00000042029.8|non-SMC condensin II complex, subunit G2	ENSMUST00000222469.2|Ncapg2|ENSMUSG00000042029.8|non-SMC condensin II complex, subunit G2	ENSMUST00000221114.2|Ncapg2|ENSMUSG00000042029.8|non-SMC condensin II complex, subunit G2	ENSMUST00000221970.2|Ncapg2|ENSMUSG00000042029.8|non-SMC condensin II complex, subunit G2
mm39_v1_chr18_+_31742565_31742565	0.452327	Zkscan1	ENSMUST00000164667.2|B930094E09Rik|ENSMUSG00000092124.2|RIKEN cDNA B930094E09 gene
mm39_v1_chr17_+_25105617_25105739	0.427261	Zkscan1	ENSMUST00000117890.8|Spsb3|ENSMUSG00000024160.17|splA/ryanodine receptor domain and SOCS box containing 3	ENSMUST00000168265.8|Spsb3|ENSMUSG00000024160.17|splA/ryanodine receptor domain and SOCS box containing 3	ENSMUST00000120943.8|Spsb3|ENSMUSG00000024160.17|splA/ryanodine receptor domain and SOCS box containing 3	ENSMUST00000068508.13|Spsb3|ENSMUSG00000024160.17|splA/ryanodine receptor domain and SOCS box containing 3	ENSMUST00000119829.8|Spsb3|ENSMUSG00000024160.17|splA/ryanodine receptor domain and SOCS box containing 3
mm39_v1_chr19_+_10502612_10502671	0.410604	Zkscan1	ENSMUST00000237321.2|Cpsf7|ENSMUSG00000034820.5|cleavage and polyadenylation specific factor 7	ENSMUST00000038379.5|Cpsf7|ENSMUSG00000034820.5|cleavage and polyadenylation specific factor 7
mm39_v1_chr8_+_70980374_70980496	0.409773	Zkscan1	ENSMUST00000119353.9|Fkbp8|ENSMUSG00000019428.17|FK506 binding protein 8	ENSMUST00000075491.14|Fkbp8|ENSMUSG00000019428.17|FK506 binding protein 8	ENSMUST00000119698.8|Fkbp8|ENSMUSG00000019428.17|FK506 binding protein 8
mm39_v1_chrX_-_77627486_77627508	0.386451	Zkscan1	ENSMUST00000114025.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000134602.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000114024.9|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1
mm39_v1_chr5_-_140307280_140307341	0.375756	Zkscan1	ENSMUST00000031534.9|Mad1l1|ENSMUSG00000029554.16|MAD1 mitotic arrest deficient 1-like 1
mm39_v1_chr16_+_43582584_43582584	0.374535	Zkscan1	ENSMUST00000023390.5|Drd3|ENSMUSG00000022705.6|dopamine receptor D3
mm39_v1_chr11_-_72380730_72380805	0.364435	Zkscan1	ENSMUST00000045303.10|Spns2|ENSMUSG00000040447.16|spinster homolog 2
mm39_v1_chr15_-_82278223_82278223	0.363572	Zkscan1	ENSMUST00000170255.2|Cyp2d11|ENSMUSG00000068085.7|cytochrome P450, family 2, subfamily d, polypeptide 11
mm39_v1_chr14_-_40728839_40728933	0.354353	Zkscan1	ENSMUST00000152837.2|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A	ENSMUST00000134715.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr5_-_113369096_113369107	0.353644	Zkscan1	ENSMUST00000211733.2|2900026A02Rik|ENSMUSG00000051339.11|RIKEN cDNA 2900026A02 gene
mm39_v1_chr8_+_4303067_4303140	0.352162	Zkscan1	ENSMUST00000011981.5|Snapc2|ENSMUSG00000011837.5|small nuclear RNA activating complex, polypeptide 2	ENSMUST00000208316.2|Snapc2|ENSMUSG00000011837.5|small nuclear RNA activating complex, polypeptide 2
mm39_v1_chr13_-_56283331_56283444	0.348593	Zkscan1	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chrX_-_77627388_77627402	0.33346	Zkscan1	ENSMUST00000177904.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1
mm39_v1_chr10_+_81648020_81648020	0.326725	Zkscan1	ENSMUST00000188096.7|Gm4767|ENSMUSG00000094076.8|predicted gene 4767
mm39_v1_chr6_-_57367651_57367651	0.322675	Zkscan1	ENSMUST00000164732.2|Vmn1r18|ENSMUSG00000091382.3|vomeronasal 1 receptor 18
mm39_v1_chr2_+_131048998_131049015	0.315697	Zkscan1	ENSMUST00000153097.3|Ap5s1|ENSMUSG00000068264.12|adaptor-related protein 5 complex, sigma 1 subunit
mm39_v1_chr13_-_43713583_43713707	0.306624	Zkscan1	ENSMUST00000021800.6|Mcur1|ENSMUSG00000021371.6|mitochondrial calcium uniporter regulator 1
mm39_v1_chr11_-_102588536_102588608	0.301901	Zkscan1	ENSMUST00000164506.3|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43	ENSMUST00000092569.13|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43
mm39_v1_chr7_-_118091135_118091198	0.298048	Zkscan1	ENSMUST00000178344.3|Itpripl2|ENSMUSG00000095115.3|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm39_v1_chr1_-_93563406_93563444	0.281536	Zkscan1	ENSMUST00000027498.14|Stk25|ENSMUSG00000026277.15|serine/threonine kinase 25 (yeast)
mm39_v1_chrX_+_158155171_158155285	0.266331	Zkscan1	ENSMUST00000087143.7|Eif1ax|ENSMUSG00000067194.7|eukaryotic translation initiation factor 1A, X-linked
mm39_v1_chr10_+_81484858_81484893	0.241986	Zkscan1	ENSMUST00000189672.7|Gm10778|ENSMUSG00000096856.8|predicted gene 10778
mm39_v1_chr12_+_84332006_84332188	0.23966	Zkscan1	ENSMUST00000123614.8|Ptgr2|ENSMUSG00000072946.13|prostaglandin reductase 2	ENSMUST00000147363.8|Ptgr2|ENSMUSG00000072946.13|prostaglandin reductase 2	ENSMUST00000135001.8|Ptgr2|ENSMUSG00000072946.13|prostaglandin reductase 2	ENSMUST00000146377.8|Ptgr2|ENSMUSG00000072946.13|prostaglandin reductase 2
mm39_v1_chr19_-_53932581_53932659	0.193329	Zkscan1	ENSMUST00000236885.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000236098.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000236370.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chr6_-_116050081_116050124	0.192181	Zkscan1	ENSMUST00000173548.3|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr19_+_10914517_10914542	0.189773	Zkscan1	ENSMUST00000037261.4|Ptgdr2|ENSMUSG00000034117.4|prostaglandin D2 receptor 2
mm39_v1_chr9_+_118881926_118881965	0.183593	Zkscan1	ENSMUST00000131647.2|Vill|ENSMUSG00000038775.15|villin-like
mm39_v1_chr17_+_33395390_33395390	0.177064	Zkscan1	ENSMUST00000112168.4|Olfr55|ENSMUSG00000094891.3|olfactory receptor 55
mm39_v1_chr7_-_132415408_132415462	0.152441	Zkscan1	ENSMUST00000134946.3|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr16_-_17019321_17019343	0.146117	Zkscan1	ENSMUST00000232668.2|Ube2l3|ENSMUSG00000038965.18|ubiquitin-conjugating enzyme E2L 3	ENSMUST00000231643.2|Ube2l3|ENSMUSG00000038965.18|ubiquitin-conjugating enzyme E2L 3	ENSMUST00000232035.2|Ube2l3|ENSMUSG00000038965.18|ubiquitin-conjugating enzyme E2L 3
mm39_v1_chrX_+_55917903_55917903	0.134438	Zkscan1	ENSMUST00000153784.8|Adgrg4|ENSMUSG00000053852.12|adhesion G protein-coupled receptor G4
mm39_v1_chr4_-_57300750_57300839	0.133343	Zkscan1	ENSMUST00000151964.2|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr11_-_78056347_78056415	0.116534	Zkscan1	ENSMUST00000017530.4|Traf4|ENSMUSG00000017386.11|TNF receptor associated factor 4
mm39_v1_chr19_-_53933052_53933063	0.113683	Zkscan1	ENSMUST00000135402.4|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chr13_+_68745528_68745540	0.109903	Zkscan1	ENSMUST00000022007.8|1700001L19Rik|ENSMUSG00000021534.9|RIKEN cDNA 1700001L19 gene
mm39_v1_chr19_+_44321531_44321531	0.105433	Zkscan1	ENSMUST00000058856.9|Scd4|ENSMUSG00000050195.9|stearoyl-coenzyme A desaturase 4
mm39_v1_chr12_-_72711509_72711530	0.0964578	Zkscan1	ENSMUST00000221750.2|Dhrs7|ENSMUSG00000021094.11|dehydrogenase/reductase (SDR family) member 7
mm39_v1_chr4_-_57300361_57300404	0.0957667	Zkscan1	ENSMUST00000153926.8|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr8_-_71315651_71315651	0.0947321	Zkscan1	ENSMUST00000212414.2|Kcnn1|ENSMUSG00000002908.18|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm39_v1_chr11_+_120348919_120348973	0.0925188	Zkscan1	ENSMUST00000058370.14|Ccdc137|ENSMUSG00000049957.15|coiled-coil domain containing 137	ENSMUST00000175970.8|Ccdc137|ENSMUSG00000049957.15|coiled-coil domain containing 137	ENSMUST00000176120.2|Ccdc137|ENSMUSG00000049957.15|coiled-coil domain containing 137
mm39_v1_chr5_+_30869193_30869259	0.0878623	Zkscan1	ENSMUST00000088081.11|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5	ENSMUST00000101442.4|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr12_-_72711533_72711683	0.0786617	Zkscan1	ENSMUST00000021512.11|Dhrs7|ENSMUSG00000021094.11|dehydrogenase/reductase (SDR family) member 7
mm39_v1_chr8_+_47193275_47193310	0.0758983	Zkscan1	ENSMUST00000207571.3|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr10_+_81919146_81919199	0.075542	Zkscan1	ENSMUST00000220287.2|BC024063|ENSMUSG00000112160.2|cDNA sequence BC024063
mm39_v1_chr11_+_69871952_69872040	0.0715404	Zkscan1	ENSMUST00000108593.8|Ctdnep1|ENSMUSG00000018559.17|CTD nuclear envelope phosphatase 1
mm39_v1_chr10_+_81540659_81540712	0.0713203	Zkscan1	ENSMUST00000200889.4|Zfp433|ENSMUSG00000096795.5|zinc finger protein 433	ENSMUST00000201819.4|Zfp433|ENSMUSG00000096795.5|zinc finger protein 433
mm39_v1_chr19_-_53932867_53932919	0.0588864	Zkscan1	ENSMUST00000235688.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1	ENSMUST00000235348.2|Bbip1|ENSMUSG00000084957.4|BBSome interacting protein 1
mm39_v1_chr2_-_73410632_73410697	0.036962	Zkscan1	ENSMUST00000028515.4|Chrna1|ENSMUSG00000027107.4|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm39_v1_chr19_+_28941292_28941369	0.0338104	Zkscan1	ENSMUST00000045674.4|Plpp6|ENSMUSG00000040105.4|phospholipid phosphatase 6
mm39_v1_chr8_-_70980584_70980633	0.0324139	Zkscan1	ENSMUST00000138260.8|Kxd1|ENSMUSG00000055553.17|KxDL motif containing 1	ENSMUST00000117580.8|Kxd1|ENSMUSG00000055553.17|KxDL motif containing 1
mm39_v1_chr19_+_53298906_53298983	0.0323059	Zkscan1	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr12_-_17061504_17061541	0.0320861	Zkscan1	ENSMUST00000189479.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr13_+_50571889_50571950	0.0300445	Zkscan1	ENSMUST00000046974.5|Fbxw17|ENSMUSG00000037816.11|F-box and WD-40 domain protein 17
mm39_v1_chr2_+_118428690_118428707	0.0299824	Zkscan1	ENSMUST00000038341.8|Bub1b|ENSMUSG00000040084.10|BUB1B, mitotic checkpoint serine/threonine kinase
mm39_v1_chr1_+_90531183_90531250	0.0270506	Zkscan1	ENSMUST00000186750.2|Cops8|ENSMUSG00000034432.12|COP9 signalosome subunit 8
mm39_v1_chr10_+_81699768_81699768	0.0250489	Zkscan1	ENSMUST00000220314.2|Gm32687|ENSMUSG00000112640.2|predicted gene, 32687
mm39_v1_chr10_-_81121596_81121651	0.0185027	Zkscan1	ENSMUST00000218484.2|Tjp3|ENSMUSG00000034917.9|tight junction protein 3
mm39_v1_chr17_+_33418036_33418036	0.0108545	Zkscan1	ENSMUST00000112165.4|Olfr239|ENSMUSG00000093884.3|olfactory receptor 239
mm39_v1_chr14_+_53707213_53707213	0.00183863	Zkscan1	ENSMUST00000103643.4|Trav8-1|ENSMUSG00000076831.4|T cell receptor alpha variable 8-1
