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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for batf2+batf3

Z-value: 0.40

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Transcription factors associated with batf2+batf3

Gene Symbol Gene ID Gene Info
batf3
ENSDARG00000042577 basic leucine zipper transcription factor, ATF-like 3
batf2
ENSDARG00000105562 si_dkey-23i12.7

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
si:dkey-23i12.7dr11_v1_chr7_+_25049545_25049577-0.626.5e-03Click!
batf3dr11_v1_chr20_-_37813863_378138630.272.7e-01Click!

Activity profile of batf2+batf3 motif

Sorted Z-values of batf2+batf3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_-_6447835 1.52 ENSDART00000012820
snupn
snurportin 1
chr25_-_6448050 1.40 ENSDART00000180616
snupn
snurportin 1
chr16_-_29387215 1.07 ENSDART00000148787
s100a1
S100 calcium binding protein A1
chr1_+_10305611 1.03 ENSDART00000043881
zgc:77880
zgc:77880
chr16_-_41667101 0.97 ENSDART00000084528
atp2c1
ATPase secretory pathway Ca2+ transporting 1
chr24_+_25822999 0.90 ENSDART00000109809
sh3kbp1
SH3-domain kinase binding protein 1
chr17_+_15674052 0.88 ENSDART00000156726
bach2a
BTB and CNC homology 1, basic leucine zipper transcription factor 2a
chr15_+_34963316 0.85 ENSDART00000153840
si:ch73-95l15.5
si:ch73-95l15.5
chr16_+_27614989 0.78 ENSDART00000005625
glipr2l
GLI pathogenesis-related 2, like
chr8_+_11687586 0.64 ENSDART00000146241
atp2a2a
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a
chr11_+_24313931 0.62 ENSDART00000017599
ENSDART00000166045
rem1
RAS (RAD and GEM)-like GTP-binding 1
chr22_+_1940595 0.58 ENSDART00000163506
znf1167
zinc finger protein 1167
chr22_+_2751887 0.58 ENSDART00000133652
si:dkey-20i20.11
si:dkey-20i20.11
chr25_+_19913611 0.56 ENSDART00000155029
gramd4b
GRAM domain containing 4b
chr11_-_43226255 0.55 ENSDART00000172929
sptbn1
spectrin, beta, non-erythrocytic 1
chr8_-_21110233 0.53 ENSDART00000127371
ENSDART00000100276
tmco1
transmembrane and coiled-coil domains 1
chr11_+_24314148 0.50 ENSDART00000171491
rem1
RAS (RAD and GEM)-like GTP-binding 1
chr3_-_49514874 0.48 ENSDART00000167179
asf1ba
anti-silencing function 1Ba histone chaperone
chr22_+_1947494 0.47 ENSDART00000159121
si:dkey-15h8.15
si:dkey-15h8.15
chr2_+_27341559 0.45 ENSDART00000176838
tesk2
testis-specific kinase 2
chr11_+_28166165 0.44 ENSDART00000169360
ENSDART00000192311
ephb2b
eph receptor B2b
chr15_-_20412286 0.44 ENSDART00000008589
chp2
calcineurin-like EF-hand protein 2
chr7_-_69352424 0.43 ENSDART00000170714
ap1g1
adaptor-related protein complex 1, gamma 1 subunit
chr4_-_25271455 0.38 ENSDART00000066936
tmem110l
transmembrane protein 110, like
chr14_-_32959851 0.34 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr22_+_2120815 0.33 ENSDART00000169133
ENSDART00000166644
ENSDART00000162221
ENSDART00000157840
znf1155
zinc finger protein 1155
chr22_+_1953096 0.29 ENSDART00000166630
ENSDART00000186234
si:dkey-15h8.16
si:dkey-15h8.16
chr10_+_28306749 0.28 ENSDART00000142016
ptrh2
peptidyl-tRNA hydrolase 2
chr15_-_762319 0.28 ENSDART00000154306
ENSDART00000157492
si:dkey-7i4.16
znf1011
si:dkey-7i4.16
zinc finger protein 1011
chr21_-_23307653 0.27 ENSDART00000140284
ENSDART00000134103
zbtb16a
zinc finger and BTB domain containing 16a
chr22_+_1853999 0.26 ENSDART00000163288
znf1174
zinc finger protein 1174
chr13_-_40754499 0.26 ENSDART00000111641
ENSDART00000159255
morn4
MORN repeat containing 4
chr25_+_7321675 0.22 ENSDART00000104712
ENSDART00000142934
hmg20a
high mobility group 20A
chr6_-_14010554 0.22 ENSDART00000004656
zgc:92027
zgc:92027
chr20_-_21994901 0.21 ENSDART00000004984
daam1b
dishevelled associated activator of morphogenesis 1b
chr18_-_12451772 0.20 ENSDART00000175083
si:ch211-1e14.1
si:ch211-1e14.1
chr2_-_30324610 0.19 ENSDART00000185422
jph1b
junctophilin 1b
chr22_+_2345752 0.19 ENSDART00000143687
zgc:174224
zgc:174224
chr1_+_41666611 0.17 ENSDART00000145789
fbxo41
F-box protein 41
chr22_+_2390544 0.16 ENSDART00000147345
ENSDART00000133611
zgc:171435
zgc:171435
chr23_-_1571682 0.16 ENSDART00000013635
fbxo30b
F-box protein 30b
chr5_+_11812089 0.16 ENSDART00000111359
fbxo21
F-box protein 21
chr22_+_2524615 0.14 ENSDART00000134277
znf1003
zinc finger protein 1003
chr1_-_20068155 0.14 ENSDART00000102993
mettl14
methyltransferase like 14
chr21_-_14762944 0.13 ENSDART00000114096
arrdc1b
arrestin domain containing 1b
chr22_+_1904546 0.10 ENSDART00000164865
si:dkey-15h8.10
si:dkey-15h8.10
chr14_+_33264303 0.10 ENSDART00000130680
ENSDART00000075187
pdzd11
PDZ domain containing 11
chr4_+_63484571 0.09 ENSDART00000169518
ENSDART00000168681
si:dkey-11d20.1
si:dkey-11d20.1
chr17_-_14591764 0.09 ENSDART00000174703
daam1a
dishevelled associated activator of morphogenesis 1a
chr22_+_2819613 0.08 ENSDART00000131234
si:dkey-20i20.3
si:dkey-20i20.3
chr3_-_40162843 0.07 ENSDART00000129664
ENSDART00000025285
drg2
developmentally regulated GTP binding protein 2
chr22_+_1517318 0.07 ENSDART00000160406
si:ch211-255f4.5
si:ch211-255f4.5
chr5_+_37035978 0.07 ENSDART00000167418
nfkbib
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta
chr2_-_30324297 0.07 ENSDART00000099078
jph1b
junctophilin 1b
chr24_+_744713 0.06 ENSDART00000067764
stk17a
serine/threonine kinase 17a
chr8_+_53120278 0.05 ENSDART00000125232
nr2c2
nuclear receptor subfamily 2, group C, member 2
chr22_+_1930589 0.04 ENSDART00000159807
znf1153
zinc finger protein 1153
chr22_+_2207502 0.04 ENSDART00000169162
si:dkeyp-79b7.12
si:dkeyp-79b7.12
chr22_+_2844865 0.03 ENSDART00000139123
si:dkey-20i20.4
si:dkey-20i20.4
chr7_-_8156169 0.03 ENSDART00000182960
ENSDART00000190184
ENSDART00000190885
ENSDART00000189867
ENSDART00000160836
si:cabz01030277.1
si:ch211-163c2.3
si:cabz01030277.1
si:ch211-163c2.3
chr22_+_1610183 0.02 ENSDART00000170725
ENSDART00000168692
znf1183
zinc finger protein 1183
chr22_+_1501566 0.02 ENSDART00000167788
AL954741.3

chr22_+_1821718 0.01 ENSDART00000132220
znf1002
zinc finger protein 1002
chr4_+_1283068 0.01 ENSDART00000167233
chrm2a
cholinergic receptor, muscarinic 2a
chr4_+_30785713 0.01 ENSDART00000165945
si:dkey-178j11.5
si:dkey-178j11.5
chr25_+_19947298 0.00 ENSDART00000067648
kcna6a
potassium voltage-gated channel, shaker-related, subfamily, member 6 a
chr25_+_37435720 0.00 ENSDART00000164390
chmp1a
charged multivesicular body protein 1A

Network of associatons between targets according to the STRING database.

First level regulatory network of batf2+batf3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.9 GO:0006404 RNA import into nucleus(GO:0006404) snRNA import into nucleus(GO:0061015)
0.2 1.1 GO:1901841 regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.2 1.0 GO:0055071 manganese ion homeostasis(GO:0055071)
0.1 0.6 GO:0034164 regulation of toll-like receptor 9 signaling pathway(GO:0034163) negative regulation of toll-like receptor 9 signaling pathway(GO:0034164)
0.1 0.5 GO:0006335 DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723)
0.1 0.5 GO:0032469 endoplasmic reticulum calcium ion homeostasis(GO:0032469)
0.1 0.9 GO:0072554 endothelial tube morphogenesis(GO:0061154) blood vessel lumenization(GO:0072554)
0.0 1.0 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.1 GO:0060019 radial glial cell differentiation(GO:0060019)
0.0 0.4 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 0.1 GO:1903361 protein localization to basolateral plasma membrane(GO:1903361)
0.0 0.4 GO:0021952 central nervous system projection neuron axonogenesis(GO:0021952)
0.0 1.7 GO:0008016 regulation of heart contraction(GO:0008016)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0008091 spectrin(GO:0008091)
0.1 0.4 GO:0030121 AP-1 adaptor complex(GO:0030121)
0.1 0.3 GO:0030314 junctional membrane complex(GO:0030314)
0.0 0.1 GO:0036396 MIS complex(GO:0036396) mRNA editing complex(GO:0045293)
0.0 0.6 GO:0033017 sarcoplasmic reticulum membrane(GO:0033017)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.9 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.2 1.0 GO:0005384 manganese ion transmembrane transporter activity(GO:0005384)
0.0 0.1 GO:0001734 mRNA (N6-adenosine)-methyltransferase activity(GO:0001734)
0.0 0.6 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 1.1 GO:0005246 calcium channel regulator activity(GO:0005246)
0.0 0.8 GO:0008474 palmitoyl-(protein) hydrolase activity(GO:0008474) palmitoyl hydrolase activity(GO:0098599)
0.0 0.3 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 1.1 GO:0048306 calcium-dependent protein binding(GO:0048306)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.1 GO:1990756 protein binding, bridging involved in substrate recognition for ubiquitination(GO:1990756)
0.0 0.4 GO:0005005 transmembrane-ephrin receptor activity(GO:0005005)
0.0 1.0 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.4 GO:0035615 clathrin adaptor activity(GO:0035615) endocytic adaptor activity(GO:0098748)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.9 PID ERBB1 INTERNALIZATION PATHWAY Internalization of ErbB1
0.0 0.6 PID TGFBR PATHWAY TGF-beta receptor signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 2.9 REACTOME METABOLISM OF NON CODING RNA Genes involved in Metabolism of non-coding RNA
0.0 0.4 REACTOME NEF MEDIATED DOWNREGULATION OF MHC CLASS I COMPLEX CELL SURFACE EXPRESSION Genes involved in Nef mediated downregulation of MHC class I complex cell surface expression
0.0 0.6 REACTOME INTERACTION BETWEEN L1 AND ANKYRINS Genes involved in Interaction between L1 and Ankyrins
0.0 0.9 REACTOME EGFR DOWNREGULATION Genes involved in EGFR downregulation
0.0 1.0 REACTOME ION TRANSPORT BY P TYPE ATPASES Genes involved in Ion transport by P-type ATPases