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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for bhlha15_bhlhe23+si:ch211-196c10.13_bhlhe22

Z-value: 0.16

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Transcription factors associated with bhlha15_bhlhe23+si:ch211-196c10.13_bhlhe22

Gene Symbol Gene ID Gene Info
bhlha15
ENSDARG00000045166 basic helix-loop-helix family, member a15
bhlhe23
ENSDARG00000037588 basic helix-loop-helix family, member e23
si_ch211-196c10.13
ENSDARG00000096756 si_ch211-196c10.13
bhlhe22
ENSDARG00000058039 basic helix-loop-helix family, member e22

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
si:ch211-196c10.13dr11_v1_chr8_+_23142946_231429460.503.4e-02Click!
bhlhe22dr11_v1_chr24_+_24461558_244615580.456.2e-02Click!
bhlha15dr11_v1_chr12_+_17754859_177548590.409.9e-02Click!
bhlhe23dr11_v1_chr23_-_17657348_17657348-0.243.3e-01Click!

Activity profile of bhlha15_bhlhe23+si:ch211-196c10.13_bhlhe22 motif

Sorted Z-values of bhlha15_bhlhe23+si:ch211-196c10.13_bhlhe22 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr19_+_31904836 0.46 ENSDART00000162297
ENSDART00000088340
ENSDART00000151280
ENSDART00000151218
tpd52
tumor protein D52
chr1_-_17711636 0.34 ENSDART00000148322
ENSDART00000122670
ufsp2
ufm1-specific peptidase 2
chr13_-_24311628 0.33 ENSDART00000004420
rab4a
RAB4a, member RAS oncogene family
chr3_+_28953274 0.33 ENSDART00000133528
ENSDART00000103602
lgals2a
lectin, galactoside-binding, soluble, 2a
chr1_-_17711361 0.32 ENSDART00000078848
ufsp2
ufm1-specific peptidase 2
chr3_+_40809011 0.30 ENSDART00000033713
arpc1b
actin related protein 2/3 complex, subunit 1B
chr20_+_34326874 0.27 ENSDART00000061659
ivns1abpa
influenza virus NS1A binding protein a
chr23_+_23658474 0.26 ENSDART00000162838
agrn
agrin
chr2_-_27775236 0.26 ENSDART00000187983
XKR4
zgc:123035
chr2_-_27774783 0.21 ENSDART00000161864
XKR4
zgc:123035
chr17_+_33453689 0.21 ENSDART00000156894
rin3
Ras and Rab interactor 3
chr12_-_14922955 0.19 ENSDART00000002078
neurod2
neurogenic differentiation 2
chr6_-_29159888 0.19 ENSDART00000110288
zbtb11
zinc finger and BTB domain containing 11
chr22_-_188102 0.16 ENSDART00000125391
ENSDART00000170463
CABZ01052268.1

chr25_+_4787607 0.15 ENSDART00000159422
myo5c
myosin VC
chr25_+_4787431 0.14 ENSDART00000170640
myo5c
myosin VC
chr16_-_45225520 0.14 ENSDART00000158855
fxyd1
FXYD domain containing ion transport regulator 1 (phospholemman)
chr10_-_31440500 0.13 ENSDART00000024778
robo3
roundabout, axon guidance receptor, homolog 3 (Drosophila)
chr1_-_10847753 0.13 ENSDART00000141052
dmd
dystrophin
chr23_-_6982966 0.12 ENSDART00000033774
ENSDART00000169965
edem2
ER degradation enhancer, mannosidase alpha-like 2
chr11_+_3989403 0.11 ENSDART00000082379
spcs1
signal peptidase complex subunit 1
chr5_+_45138934 0.11 ENSDART00000041412
ENSDART00000136002
smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
chr3_-_52674089 0.11 ENSDART00000154260
ENSDART00000125455
si:dkey-210j14.4
si:dkey-210j14.4
chr2_+_7075220 0.11 ENSDART00000022963
cdc14aa
cell division cycle 14Aa
chr3_+_31621774 0.10 ENSDART00000076636
fzd2
frizzled class receptor 2
chr15_+_15856178 0.10 ENSDART00000080338
dusp14
dual specificity phosphatase 14
chr20_-_22476255 0.09 ENSDART00000103510
pdgfra
platelet-derived growth factor receptor, alpha polypeptide
chr8_+_27555314 0.09 ENSDART00000135568
ENSDART00000016696
rhocb
ras homolog family member Cb
chr15_-_14884332 0.09 ENSDART00000165237
si:ch211-24o8.4
si:ch211-24o8.4
chr2_-_39036604 0.08 ENSDART00000129963
rbp1
retinol binding protein 1b, cellular
chr19_-_21766461 0.08 ENSDART00000104279
znf516
zinc finger protein 516
chr4_+_15968483 0.08 ENSDART00000101575
si:dkey-117n7.5
si:dkey-117n7.5
chr18_-_14836862 0.08 ENSDART00000124843
mtss1la
metastasis suppressor 1-like a
chr20_+_18994059 0.08 ENSDART00000152380
tdh
L-threonine dehydrogenase
chr19_+_31044487 0.08 ENSDART00000143494
ankmy2b
ankyrin repeat and MYND domain containing 2b
chr10_-_31015535 0.07 ENSDART00000146116
panx3
pannexin 3
chr4_-_8882572 0.07 ENSDART00000190060
mpped1
metallophosphoesterase domain containing 1
chr19_+_30990815 0.07 ENSDART00000134645
sync
syncoilin, intermediate filament protein
chr17_-_42218652 0.07 ENSDART00000081396
ENSDART00000190007
nkx2.2a
NK2 homeobox 2a
chr5_+_45139196 0.06 ENSDART00000113738
smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
chr6_+_50451337 0.06 ENSDART00000155051
mych
myelocytomatosis oncogene homolog
chr19_+_32822269 0.06 ENSDART00000052097
ENSDART00000052096
ENSDART00000188012
rida
reactive intermediate imine deaminase A homolog
chr7_-_50395395 0.06 ENSDART00000065868
vps33b
vacuolar protein sorting 33B
chr11_+_16152316 0.06 ENSDART00000081054
tada3l
transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr17_+_28882977 0.06 ENSDART00000153937
prkd1
protein kinase D1
chr12_-_8070969 0.06 ENSDART00000020995
tmem26b
transmembrane protein 26b
chr7_-_50395059 0.06 ENSDART00000191150
vps33b
vacuolar protein sorting 33B
chr19_+_19786117 0.05 ENSDART00000167757
ENSDART00000163546
hoxa1a
homeobox A1a
chr11_-_34521342 0.05 ENSDART00000114004
pik3ca
phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha
chr7_-_15413188 0.05 ENSDART00000185980
si:ch211-106j24.1
si:ch211-106j24.1
chr1_+_42874410 0.05 ENSDART00000153506
ctnna2
catenin (cadherin-associated protein), alpha 2
chr13_-_8692432 0.05 ENSDART00000058106
mcfd2
multiple coagulation factor deficiency 2
chr3_+_57779673 0.05 ENSDART00000101839
tmc6a
transmembrane channel-like 6a
chr21_+_11468642 0.05 ENSDART00000041869
grin1a
glutamate receptor, ionotropic, N-methyl D-aspartate 1a
chr11_-_16152400 0.04 ENSDART00000123665
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr6_+_54142311 0.04 ENSDART00000154115
hmga1b
high mobility group AT-hook 1b
chr5_+_36693859 0.04 ENSDART00000019259
dlb
deltaB
chr10_+_22536693 0.04 ENSDART00000185037
ENSDART00000146040
efnb3a
ephrin-B3a
chr13_+_22295905 0.04 ENSDART00000180133
ENSDART00000181125
usp54a
ubiquitin specific peptidase 54a
chr20_+_18994465 0.04 ENSDART00000152778
tdh
L-threonine dehydrogenase
chr13_-_8692860 0.04 ENSDART00000058107
mcfd2
multiple coagulation factor deficiency 2
chr24_+_17345521 0.04 ENSDART00000024722
ENSDART00000154250
ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
chr14_+_25817246 0.04 ENSDART00000136733
glra1
glycine receptor, alpha 1
chr15_-_4314042 0.04 ENSDART00000173311
ENSDART00000170562
ECE2
si:ch211-117a13.2
chr17_-_20558961 0.04 ENSDART00000155993
sh3pxd2ab
SH3 and PX domains 2Ab
chr9_+_32860345 0.04 ENSDART00000121751
si:dkey-145p14.5
si:dkey-145p14.5
chr9_+_8894788 0.04 ENSDART00000132068
naxd
NAD(P)HX dehydratase
chr7_-_18508815 0.04 ENSDART00000173539
rgs12a
regulator of G protein signaling 12a
chr12_+_3301149 0.04 ENSDART00000010569
g6pc3
glucose 6 phosphatase, catalytic, 3
chr11_-_16152105 0.04 ENSDART00000081062
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr6_+_14980761 0.03 ENSDART00000087782
mrps9
mitochondrial ribosomal protein S9
chr13_-_31441042 0.03 ENSDART00000076571
rtn1a
reticulon 1a
chr9_-_8895130 0.03 ENSDART00000144673
ENSDART00000138527
rab20
RAB20, member RAS oncogene family
chr7_-_46019756 0.03 ENSDART00000162583
zgc:162297
zgc:162297
chr19_+_14113886 0.03 ENSDART00000169343
kdf1b
keratinocyte differentiation factor 1b
chr9_+_29994439 0.03 ENSDART00000012447
tmem30c
transmembrane protein 30C
chr13_-_17723417 0.03 ENSDART00000183834
vdac2
voltage-dependent anion channel 2
chr1_+_5275811 0.03 ENSDART00000189676
spry2
sprouty RTK signaling antagonist 2
chr5_-_41709234 0.03 ENSDART00000083656
atxn2
ataxin 2
chr13_+_28821841 0.03 ENSDART00000179900
CU639469.1

chr9_-_34121839 0.03 ENSDART00000000004
slc35a5
solute carrier family 35, member A5
chr8_-_3773374 0.03 ENSDART00000115036
bicdl1
BICD family like cargo adaptor 1
chr4_+_5796761 0.03 ENSDART00000164854
si:ch73-352p4.8
si:ch73-352p4.8
chr23_+_31979602 0.03 ENSDART00000140351
pan2
PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr7_-_15413019 0.03 ENSDART00000172147
si:ch211-106j24.1
si:ch211-106j24.1
chr24_+_13925066 0.03 ENSDART00000134221
ENSDART00000012253
ENSDART00000081595
ENSDART00000136443
eya1
EYA transcriptional coactivator and phosphatase 1
chr8_+_39663612 0.02 ENSDART00000188074
BX005328.1

chr14_-_4682114 0.02 ENSDART00000014454
gabra4
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
chr23_-_21453614 0.02 ENSDART00000079274
her4.1
hairy-related 4, tandem duplicate 1
chr1_-_16394814 0.02 ENSDART00000013024
fgf20a
fibroblast growth factor 20a
chr20_+_19423823 0.02 ENSDART00000152216
znf513a
zinc finger protein 513a
chr14_-_30897177 0.02 ENSDART00000087918
slc7a3b
solute carrier family 7 (cationic amino acid transporter, y+ system), member 3b
chr16_+_13424534 0.02 ENSDART00000114944
zgc:101640
zgc:101640
chr14_+_25816874 0.02 ENSDART00000005499
glra1
glycine receptor, alpha 1
chr1_+_47486104 0.02 ENSDART00000114746
lrrc58a
leucine rich repeat containing 58a
chr6_-_36182115 0.02 ENSDART00000154639
brinp3a.2
bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 2
chr10_+_22012389 0.02 ENSDART00000035188
kcnip1b
Kv channel interacting protein 1 b
chr22_+_3238474 0.02 ENSDART00000157954
si:ch1073-178p5.3
si:ch1073-178p5.3
chr9_+_32859967 0.02 ENSDART00000168992
si:dkey-145p14.5
si:dkey-145p14.5
chr12_-_17602958 0.02 ENSDART00000134690
ENSDART00000028090
eif2ak1
eukaryotic translation initiation factor 2-alpha kinase 1
chr1_-_54706039 0.02 ENSDART00000083633
exosc1
exosome component 1
chr8_+_20825987 0.02 ENSDART00000133309
si:ch211-133l5.4
si:ch211-133l5.4
chr6_-_60020385 0.02 ENSDART00000169990
ENSDART00000167740
ENSDART00000098247
wbp4
WW domain binding protein 4
chr17_+_12658411 0.02 ENSDART00000139918
gpn1
GPN-loop GTPase 1
chr7_+_5977707 0.02 ENSDART00000172790
si:dkey-23a13.22
si:dkey-23a13.22
chr9_-_42989297 0.02 ENSDART00000126871
ttn.2
titin, tandem duplicate 2
chr7_+_41421998 0.02 ENSDART00000083967
chpf2
chondroitin polymerizing factor 2
chr7_-_71384391 0.02 ENSDART00000112841
ccdc149a
coiled-coil domain containing 149a
chr23_+_21544227 0.01 ENSDART00000140253
arhgef10lb
Rho guanine nucleotide exchange factor (GEF) 10-like b
chr3_-_57779801 0.01 ENSDART00000074285
syngr2a
synaptogyrin 2a
chr7_-_31938938 0.01 ENSDART00000132353
bdnf
brain-derived neurotrophic factor
chr2_+_33383227 0.01 ENSDART00000183068
slc6a9
solute carrier family 6 (neurotransmitter transporter, glycine), member 9
chr19_-_10771558 0.01 ENSDART00000085165
slc9a3.2
solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3, tandem duplicate 2
chr14_+_23874062 0.01 ENSDART00000172149
sh3rf2
SH3 domain containing ring finger 2
chr4_+_20318127 0.01 ENSDART00000028856
ENSDART00000132909
cacna1c
calcium channel, voltage-dependent, L type, alpha 1C subunit
chr10_-_7347311 0.01 ENSDART00000168885
nrg1
neuregulin 1
chr19_-_24125457 0.01 ENSDART00000080632
zgc:64022
zgc:64022
chr21_-_13751535 0.01 ENSDART00000111666
npdc1a
neural proliferation, differentiation and control, 1a
chr20_+_36730049 0.01 ENSDART00000045948
ncoa1
nuclear receptor coactivator 1
chr22_+_11857356 0.01 ENSDART00000179540
mras
muscle RAS oncogene homolog
chr21_-_25601648 0.01 ENSDART00000042578
efemp2b
EGF containing fibulin extracellular matrix protein 2b
chr15_-_14486534 0.01 ENSDART00000179368
numbl
numb homolog (Drosophila)-like
chr24_+_14527935 0.01 ENSDART00000134846
si:dkeyp-73g8.5
si:dkeyp-73g8.5
chr13_-_41908583 0.01 ENSDART00000136515
ipmka
inositol polyphosphate multikinase a
chr12_+_24562667 0.01 ENSDART00000056256
nrxn1a
neurexin 1a
chr20_-_46138110 0.01 ENSDART00000134704
taar10b
trace amine-associated receptor 10b
chr22_-_14475927 0.01 ENSDART00000135768
lrp1ba
low density lipoprotein receptor-related protein 1Ba
chr9_+_38168012 0.01 ENSDART00000102445
clasp1a
cytoplasmic linker associated protein 1a
chr22_-_18116635 0.01 ENSDART00000005724
ncanb
neurocan b
chr15_+_14145346 0.01 ENSDART00000047531
clca5.2
chloride channel accessory 5, tandem duplicate 2
chr15_+_32297441 0.01 ENSDART00000153657
trim3a
tripartite motif containing 3a
chr3_-_26109322 0.01 ENSDART00000113780
zgc:162612
zgc:162612
chr20_+_39283849 0.01 ENSDART00000002481
ENSDART00000146683
scara3
scavenger receptor class A, member 3
chr20_+_43379029 0.01 ENSDART00000142486
ENSDART00000186486
unc93a
unc-93 homolog A
chr4_+_12617108 0.01 ENSDART00000134362
ENSDART00000112860
lmo3
LIM domain only 3
chr22_-_24248420 0.01 ENSDART00000165433
rgs2
regulator of G protein signaling 2
chr4_+_14360372 0.00 ENSDART00000007103
nuak1a
NUAK family, SNF1-like kinase, 1a
chr11_+_2202987 0.00 ENSDART00000190008
ENSDART00000173139
hoxc6b
homeobox C6b
chr17_+_20174812 0.00 ENSDART00000186628
si:ch211-248a14.8
si:ch211-248a14.8
chr20_-_46155153 0.00 ENSDART00000140132
taar10c
trace amine-associated receptor 10c
chr20_-_8365244 0.00 ENSDART00000167102
dab1a
Dab, reelin signal transducer, homolog 1a (Drosophila)
chr12_-_3753131 0.00 ENSDART00000129668
fam57bb
family with sequence similarity 57, member Bb
chr14_+_36521553 0.00 ENSDART00000136233
TENM3
si:dkey-237h12.3
chr12_+_15487834 0.00 ENSDART00000181138
arhgap23b
Rho GTPase activating protein 23b
chr18_+_48428126 0.00 ENSDART00000137978
fli1a
Fli-1 proto-oncogene, ETS transcription factor a
chr6_+_7553085 0.00 ENSDART00000150939
ENSDART00000151114
myh10
myosin, heavy chain 10, non-muscle
chr10_-_23358357 0.00 ENSDART00000135475
cadm2a
cell adhesion molecule 2a
chr5_-_24127310 0.00 ENSDART00000182700
ENSDART00000154313
capga
capping protein (actin filament), gelsolin-like a
chr19_-_22387141 0.00 ENSDART00000151234
eppk1
epiplakin 1
chr3_+_50310684 0.00 ENSDART00000112152
gas7a
growth arrest-specific 7a
chr2_-_55861351 0.00 ENSDART00000059003
rx2
retinal homeobox gene 2
chr10_-_36220061 0.00 ENSDART00000160392
or109-7
odorant receptor, family D, subfamily 109, member 7
chr6_+_46668717 0.00 ENSDART00000064853
oxtrl
oxytocin receptor like
chr15_+_36457888 0.00 ENSDART00000155100
si:dkey-262k9.2
si:dkey-262k9.2
chr10_+_24445698 0.00 ENSDART00000146370
slc7a1
solute carrier family 7 (cationic amino acid transporter, y+ system), member 1

Network of associatons between targets according to the STRING database.

First level regulatory network of bhlha15_bhlhe23+si:ch211-196c10.13_bhlhe22

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:1902571 regulation of serine-type peptidase activity(GO:1902571)
0.0 0.2 GO:0060074 synapse maturation(GO:0060074)
0.0 0.1 GO:0061341 non-canonical Wnt signaling pathway involved in heart development(GO:0061341)
0.0 0.2 GO:0031507 heterochromatin assembly(GO:0031507)
0.0 0.3 GO:0090303 positive regulation of wound healing(GO:0090303)
0.0 0.1 GO:0021530 spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.0 0.5 GO:0030183 B cell differentiation(GO:0030183)
0.0 0.1 GO:0071361 cellular response to ethanol(GO:0071361)
0.0 0.1 GO:0003261 cardiac muscle progenitor cell migration to the midline involved in heart field formation(GO:0003261)
0.0 0.3 GO:0002574 thrombocyte differentiation(GO:0002574)
0.0 0.1 GO:0006567 threonine metabolic process(GO:0006566) threonine catabolic process(GO:0006567)
0.0 0.1 GO:1902766 skeletal muscle satellite cell migration(GO:1902766)
0.0 0.0 GO:0051823 regulation of synapse structural plasticity(GO:0051823)
0.0 0.1 GO:0007525 somatic muscle development(GO:0007525)
0.0 0.1 GO:0032732 positive regulation of interleukin-1 production(GO:0032732)
0.0 0.3 GO:0032482 Rab protein signal transduction(GO:0032482)
0.0 0.1 GO:0071850 mitotic cell cycle arrest(GO:0071850)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0032593 insulin-responsive compartment(GO:0032593)
0.0 0.1 GO:0033263 CORVET complex(GO:0033263)
0.0 0.1 GO:1902636 kinociliary basal body(GO:1902636)
0.0 0.3 GO:0005885 Arp2/3 protein complex(GO:0005885)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0016936 galactoside binding(GO:0016936)
0.0 0.1 GO:0008743 L-threonine 3-dehydrogenase activity(GO:0008743)
0.0 0.1 GO:0005017 platelet-derived growth factor-activated receptor activity(GO:0005017) platelet-derived growth factor binding(GO:0048407)
0.0 0.3 GO:0043236 laminin binding(GO:0043236)
0.0 0.0 GO:0052855 ATP-dependent NAD(P)H-hydrate dehydratase activity(GO:0047453) ADP-dependent NAD(P)H-hydrate dehydratase activity(GO:0052855)
0.0 0.1 GO:0015924 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571) mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.0 0.7 GO:0016790 thiolester hydrolase activity(GO:0016790)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 REACTOME HS GAG BIOSYNTHESIS Genes involved in HS-GAG biosynthesis