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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for cux1a

Z-value: 0.09

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Transcription factors associated with cux1a

Gene Symbol Gene ID Gene Info
cux1a
ENSDARG00000078459 cut-like homeobox 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
cux1adr11_v1_chr10_-_33156789_33156789-0.542.2e-02Click!

Activity profile of cux1a motif

Sorted Z-values of cux1a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr12_-_7607114 0.25 ENSDART00000158095
slc16a9b
solute carrier family 16, member 9b
chr18_+_7611298 0.23 ENSDART00000062156
odf3b
outer dense fiber of sperm tails 3B
chr22_-_15562933 0.21 ENSDART00000141528
ankmy1
ankyrin repeat and MYND domain containing 1
chr16_+_25126935 0.18 ENSDART00000058945
zgc:92590
zgc:92590
chr17_+_12159529 0.16 ENSDART00000046802
sccpdha
saccharopine dehydrogenase a
chr23_-_33986762 0.15 ENSDART00000144609
tmed4
transmembrane p24 trafficking protein 4
chr12_+_48220584 0.15 ENSDART00000164392
lrrc20
leucine rich repeat containing 20
chr22_+_29067388 0.12 ENSDART00000133673
pimr100
Pim proto-oncogene, serine/threonine kinase, related 100
chr25_-_6082509 0.11 ENSDART00000104755
cpeb1a
cytoplasmic polyadenylation element binding protein 1a
chr15_+_36966369 0.11 ENSDART00000163622
kirrel3l
kirre like nephrin family adhesion molecule 3, like
chr5_-_13835461 0.11 ENSDART00000148297
ENSDART00000114841
add2
adducin 2 (beta)
chr22_+_28969071 0.10 ENSDART00000163427
pimr95
Pim proto-oncogene, serine/threonine kinase, related 95
chr2_+_7715810 0.10 ENSDART00000130781
eif4a2
eukaryotic translation initiation factor 4A, isoform 2
chr20_+_33875256 0.09 ENSDART00000002554
rxrgb
retinoid X receptor, gamma b
chr16_+_19014886 0.09 ENSDART00000079298
si:ch211-254p10.2
si:ch211-254p10.2
chr25_-_35182347 0.09 ENSDART00000115210
ano9a
anoctamin 9a
chr11_-_12673637 0.08 ENSDART00000186058
CR450764.7

chr21_+_21012210 0.08 ENSDART00000190317
ndr1
nodal-related 1
chr18_+_5490668 0.08 ENSDART00000167035
mibp2
muscle-specific beta 1 integrin binding protein 2
chr22_+_13917311 0.08 ENSDART00000022654
sh3bp4a
SH3-domain binding protein 4a
chrM_+_9735 0.07 ENSDART00000093613
mt-co3
cytochrome c oxidase III, mitochondrial
chr11_-_12705608 0.07 ENSDART00000158937
ENSDART00000114391
zgc:174353
zgc:174353
chr12_-_19091214 0.07 ENSDART00000153225
si:ch73-139e5.4
si:ch73-139e5.4
chr20_-_54075136 0.07 ENSDART00000074255
mgat2
mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
chr11_+_16152316 0.07 ENSDART00000081054
tada3l
transcriptional adaptor 3 (NGG1 homolog, yeast)-like
chr7_+_49272702 0.06 ENSDART00000083389
abtb2a
ankyrin repeat and BTB (POZ) domain containing 2a
chr8_+_48491387 0.06 ENSDART00000086053
PRDM16
si:ch211-263k4.2
chr4_-_14915268 0.06 ENSDART00000067040
si:dkey-180p18.9
si:dkey-180p18.9
chr7_-_25895189 0.06 ENSDART00000173599
ENSDART00000079235
ENSDART00000173786
ENSDART00000173602
ENSDART00000079245
ENSDART00000187568
ENSDART00000173505
cd99l2
CD99 molecule-like 2
chr16_+_1383914 0.06 ENSDART00000185089
cers2b
ceramide synthase 2b
chr7_+_29951997 0.06 ENSDART00000173453
tpma
alpha-tropomyosin
chr4_-_25485404 0.05 ENSDART00000041402
pfkfb3
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
chr24_+_35881124 0.05 ENSDART00000143015
klhl14
kelch-like family member 14
chr25_+_21324588 0.05 ENSDART00000151842
lrrn3a
leucine rich repeat neuronal 3a
chr3_-_37082618 0.05 ENSDART00000026701
ENSDART00000110716
tubg1
tubulin, gamma 1
chr22_+_34691020 0.04 ENSDART00000192202
hykk.1
hydroxylysine kinase, tandem duplicate 1
chr10_-_11397590 0.04 ENSDART00000064212
srek1ip1
SREK1-interacting protein 1
chr6_-_29105727 0.04 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr23_+_3721042 0.04 ENSDART00000143323
smim29
small integral membrane protein 29
chr24_-_39826865 0.04 ENSDART00000089232
slc12a7b
solute carrier family 12 (potassium/chloride transporter), member 7b
chr11_-_16152400 0.04 ENSDART00000123665
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr23_-_44494401 0.03 ENSDART00000114640
ENSDART00000148532
actl6b
actin-like 6B
chr15_+_42626957 0.03 ENSDART00000154754
grik1b
glutamate receptor, ionotropic, kainate 1b
chr23_+_9353552 0.03 ENSDART00000163298
BX511246.1

chr12_-_9700605 0.03 ENSDART00000161063
heatr1
HEAT repeat containing 1
chr16_+_4658250 0.03 ENSDART00000006212
LIN28A
si:ch1073-284b18.2
chr3_-_5555500 0.03 ENSDART00000176133
ENSDART00000057464
trim35-31
tripartite motif containing 35-31
chr11_-_16152105 0.03 ENSDART00000081062
arpc4l
actin related protein 2/3 complex, subunit 4, like
chr17_+_53435279 0.03 ENSDART00000126630
cx52.9
connexin 52.9
chr21_+_17768174 0.02 ENSDART00000141380
rxraa
retinoid X receptor, alpha a
chr1_-_49932040 0.02 ENSDART00000048281
cyp2u1
cytochrome P450, family 2, subfamily U, polypeptide 1
chr8_-_29851706 0.02 ENSDART00000149297
slc20a2
solute carrier family 20 (phosphate transporter), member 2
chr23_-_24047054 0.02 ENSDART00000184308
ENSDART00000185902
CR925720.1

chr1_+_55703120 0.02 ENSDART00000141089
adgre6
adhesion G protein-coupled receptor E6
chr14_-_25985698 0.02 ENSDART00000172909
ENSDART00000123053
atox1
antioxidant 1 copper chaperone
chr22_+_28446365 0.02 ENSDART00000189359
abi3bpb
ABI family, member 3 (NESH) binding protein b
chr4_-_51460013 0.02 ENSDART00000193382
CR628395.1

chr17_+_45454943 0.02 ENSDART00000074838
kcnk3b
potassium channel, subfamily K, member 3b
chr12_-_4185554 0.02 ENSDART00000152313
si:dkey-32n7.7
si:dkey-32n7.7
chr24_-_3407507 0.01 ENSDART00000132648
nck1b
NCK adaptor protein 1b
chr17_+_11507131 0.01 ENSDART00000013170
kif26ba
kinesin family member 26Ba
chr17_-_30839338 0.01 ENSDART00000139707
gdf7
growth differentiation factor 7
chr17_+_48164536 0.01 ENSDART00000161750
ENSDART00000156923
plekhd1
pleckstrin homology domain containing, family D (with coiled-coil domains) member 1
chr3_-_38692920 0.01 ENSDART00000155042
mpp3a
membrane protein, palmitoylated 3a (MAGUK p55 subfamily member 3)
chr20_+_32406011 0.01 ENSDART00000018640
ENSDART00000137910
snx3
sorting nexin 3
chr3_-_31079186 0.01 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr22_+_28446557 0.01 ENSDART00000089546
abi3bpb
ABI family, member 3 (NESH) binding protein b
chr16_-_24561354 0.01 ENSDART00000193278
ENSDART00000126274
si:ch211-79k12.2
si:ch211-79k12.2
chr2_-_56649883 0.01 ENSDART00000191786
gpx4b
glutathione peroxidase 4b
chr8_-_24135171 0.01 ENSDART00000112926
adora1b
adenosine A1 receptor b
chr12_-_4540564 0.00 ENSDART00000106566
CABZ01030107.1

chr16_-_17175731 0.00 ENSDART00000183057
opn9
opsin 9
chr1_-_39976492 0.00 ENSDART00000181680
stox2a
storkhead box 2a
chr15_-_16704417 0.00 ENSDART00000155163
caln1
calneuron 1
chr13_-_36264861 0.00 ENSDART00000100204
slc8a3
solute carrier family 8 (sodium/calcium exchanger), member 3
chr10_+_21786656 0.00 ENSDART00000185851
ENSDART00000167219
pcdh1g26
protocadherin 1 gamma 26
chr11_-_20956309 0.00 ENSDART00000188659
CABZ01008739.1

chr16_-_12095144 0.00 ENSDART00000145106
pex5
peroxisomal biogenesis factor 5
chr19_+_14059349 0.00 ENSDART00000166230
tpbga
trophoblast glycoprotein a
chr14_-_33083539 0.00 ENSDART00000160173
dlg3
discs, large homolog 3 (Drosophila)

Network of associatons between targets according to the STRING database.

First level regulatory network of cux1a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0034260 negative regulation of GTPase activity(GO:0034260)
0.0 0.0 GO:0000212 meiotic spindle organization(GO:0000212)
0.0 0.1 GO:0034755 iron ion transmembrane transport(GO:0034755)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0044323 retinoic acid-responsive element binding(GO:0044323)
0.0 0.1 GO:0070698 type I activin receptor binding(GO:0070698)
0.0 0.1 GO:0050262 ribosylnicotinamide kinase activity(GO:0050262)