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PRJNA438478: RNAseq of wild type zebrafish germline
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Results for cxxc1a+cxxc1b+mbd1a
Z-value: 0.23
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Transcription factors associated with cxxc1a+cxxc1b+mbd1a
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
cxxc1b
|
ENSDARG00000025718 | CXXC finger protein 1b |
|
mbd1a
|
ENSDARG00000101205 | methyl-CpG binding domain protein 1a |
|
cxxc1a
|
ENSDARG00000101996 | CXXC finger protein 1a |
|
cxxc1b
|
ENSDARG00000111907 | CXXC finger protein 1b |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| cxxc1a | dr11_v1_chr8_+_7854130_7854130 | -0.85 | 9.3e-06 | Click! |
| mbd1a | dr11_v1_chr8_+_7875110_7875142 | -0.77 | 2.1e-04 | Click! |
| cxxc1b | dr11_v1_chr11_+_25539698_25539698 | 0.20 | 4.4e-01 | Click! |
Activity profile of cxxc1a+cxxc1b+mbd1a motif
Sorted Z-values of cxxc1a+cxxc1b+mbd1a motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr3_-_19200571 | 0.64 |
ENSDART00000131503
ENSDART00000012335 |
rfx1a
|
regulatory factor X, 1a (influences HLA class II expression) |
| chr18_+_1145571 | 0.61 |
ENSDART00000135055
|
rec114
|
REC114 meiotic recombination protein |
| chr7_+_38509333 | 0.29 |
ENSDART00000153482
|
slc7a9
|
solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9 |
| chr11_-_438294 | 0.28 |
ENSDART00000040812
|
nuf2
|
NUF2, NDC80 kinetochore complex component, homolog |
| chr21_+_2721752 | 0.26 |
ENSDART00000174953
|
CABZ01073424.1
|
|
| chr11_-_438492 | 0.25 |
ENSDART00000137121
ENSDART00000133784 |
nuf2
|
NUF2, NDC80 kinetochore complex component, homolog |
| chr21_+_27448856 | 0.24 |
ENSDART00000100784
|
cfbl
|
complement factor b-like |
| chr21_-_23746916 | 0.11 |
ENSDART00000017229
|
ncam1a
|
neural cell adhesion molecule 1a |
| chr21_-_7781555 | 0.09 |
ENSDART00000084380
ENSDART00000189131 |
aggf1
|
angiogenic factor with G patch and FHA domains 1 |
| chr17_+_3390772 | 0.09 |
ENSDART00000160073
|
sntg2
|
syntrophin, gamma 2 |
| chr15_-_3940671 | 0.08 |
ENSDART00000189741
|
mindy4b
|
MINDY family member 4B |
| chr11_+_44579865 | 0.06 |
ENSDART00000173425
|
nid1b
|
nidogen 1b |
| chr21_+_29179887 | 0.05 |
ENSDART00000161941
|
si:ch211-57b15.1
|
si:ch211-57b15.1 |
| chr21_-_28901095 | 0.03 |
ENSDART00000180820
|
cxxc5a
|
CXXC finger protein 5a |
| chr22_-_6988102 | 0.01 |
ENSDART00000185618
|
fgfr1bl
|
fibroblast growth factor receptor 1b, like |
Network of associatons between targets according to the STRING database.
First level regulatory network of cxxc1a+cxxc1b+mbd1a
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore(GO:0051315) |
| 0.0 | 0.1 | GO:0021961 | posterior commissure morphogenesis(GO:0021961) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0031262 | Ndc80 complex(GO:0031262) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:1990380 | Lys48-specific deubiquitinase activity(GO:1990380) |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |