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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for dmbx1a+dmbx1b

Z-value: 0.14

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Transcription factors associated with dmbx1a+dmbx1b

Gene Symbol Gene ID Gene Info
dmbx1b
ENSDARG00000002510 diencephalon/mesencephalon homeobox 1b
dmbx1a
ENSDARG00000009922 diencephalon/mesencephalon homeobox 1a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
dmbx1adr11_v1_chr2_-_10188598_10188598-0.762.6e-04Click!
dmbx1bdr11_v1_chr6_-_3573716_3573716-0.691.5e-03Click!

Activity profile of dmbx1a+dmbx1b motif

Sorted Z-values of dmbx1a+dmbx1b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_4256300 0.27 ENSDART00000103319
ENSDART00000150279
cd9b
CD9 molecule b
chr4_-_16628801 0.26 ENSDART00000040708
ENSDART00000064009
caprin2
caprin family member 2
chr16_-_46578523 0.22 ENSDART00000131061
si:dkey-152b24.6
si:dkey-152b24.6
chr5_-_22602979 0.21 ENSDART00000146287
nono
non-POU domain containing, octamer-binding
chr5_-_22602780 0.19 ENSDART00000011699
nono
non-POU domain containing, octamer-binding
chr5_-_69180587 0.16 ENSDART00000156681
ENSDART00000160753
zgc:171967
zgc:171967
chr23_-_3759345 0.15 ENSDART00000132205
ENSDART00000137707
ENSDART00000189382
hmga1a
high mobility group AT-hook 1a
chr19_-_30811161 0.15 ENSDART00000103524
myclb
MYCL proto-oncogene, bHLH transcription factor b
chr12_+_33460794 0.15 ENSDART00000007053
ENSDART00000142716
narf
nuclear prelamin A recognition factor
chr2_+_51783120 0.15 ENSDART00000177559
crygn1
crystallin, gamma N1
chr2_+_44972720 0.14 ENSDART00000075146
alg3
asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
chr23_-_27050083 0.14 ENSDART00000142324
ENSDART00000133249
ENSDART00000138751
ENSDART00000128718
zgc:66440
zgc:66440
chr5_-_69180227 0.13 ENSDART00000154816
zgc:171967
zgc:171967
chr2_+_243778 0.13 ENSDART00000182262
CABZ01085887.1

chr16_+_16265850 0.13 ENSDART00000181265
setd2
SET domain containing 2
chr23_-_3759692 0.13 ENSDART00000028885
hmga1a
high mobility group AT-hook 1a
chr8_+_54263946 0.12 ENSDART00000193119
TMCC1 (1 of many)
transmembrane and coiled-coil domain family 1
chr5_+_25733774 0.11 ENSDART00000137088
ENSDART00000098467
abhd17b
abhydrolase domain containing 17B
chr9_+_48123224 0.11 ENSDART00000141610
klhl23
kelch-like family member 23
chr19_+_24324967 0.11 ENSDART00000090081
sema4ab
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab
chr7_+_19483277 0.10 ENSDART00000173750
si:ch211-212k18.7
si:ch211-212k18.7
chr23_+_25291891 0.10 ENSDART00000016248
pa2g4b
proliferation-associated 2G4, b
chr14_+_2487672 0.10 ENSDART00000170629
ENSDART00000123063
fgf18a
fibroblast growth factor 18a
chr17_-_8656155 0.09 ENSDART00000148990
ctbp2a
C-terminal binding protein 2a
chr15_-_7337148 0.09 ENSDART00000182568
SLC7A1 (1 of many)
high affinity cationic amino acid transporter 1
chr7_+_19482877 0.09 ENSDART00000077868
si:ch211-212k18.7
si:ch211-212k18.7
chr13_-_14269626 0.09 ENSDART00000079176
gfra4a
GDNF family receptor alpha 4a
chr13_+_40815012 0.09 ENSDART00000016960
prkg1a
protein kinase, cGMP-dependent, type Ia
chr21_-_28340977 0.09 ENSDART00000141629
nrxn2a
neurexin 2a
chr24_-_24060460 0.08 ENSDART00000142813
abcc13
ATP-binding cassette, sub-family C (CFTR/MRP), member 13
chr8_-_30424182 0.08 ENSDART00000099021
dock8
dedicator of cytokinesis 8
chr13_+_1015749 0.08 ENSDART00000190982
prokr1b
prokineticin receptor 1b
chr13_-_31938512 0.08 ENSDART00000026726
ENSDART00000182666
diexf
digestive organ expansion factor homolog
chr18_+_15644559 0.08 ENSDART00000061794
nr1h4
nuclear receptor subfamily 1, group H, member 4
chr2_-_9744081 0.07 ENSDART00000097732
dvl3a
dishevelled segment polarity protein 3a
chr24_-_24060632 0.07 ENSDART00000090514
abcc13
ATP-binding cassette, sub-family C (CFTR/MRP), member 13
chr7_-_72423666 0.07 ENSDART00000191214
rph3ab
rabphilin 3A homolog (mouse), b
chr18_+_21951551 0.07 ENSDART00000146261
ranbp10
RAN binding protein 10
chr11_-_29082175 0.07 ENSDART00000123245
igsf21a
immunoglobin superfamily, member 21a
chr7_-_21905851 0.07 ENSDART00000111066
ENSDART00000020288
epoa
erythropoietin a
chr21_+_44773237 0.06 ENSDART00000084780
rnf121
ring finger protein 121
chr10_+_31244619 0.06 ENSDART00000145562
ENSDART00000184412
robo4
roundabout, axon guidance receptor, homolog 4 (Drosophila)
chr13_-_35892051 0.06 ENSDART00000145884
tacc3
transforming, acidic coiled-coil containing protein 3
chr3_-_41995321 0.06 ENSDART00000192277
ttyh3a
tweety family member 3a
chr2_-_38363017 0.06 ENSDART00000088026
prmt5
protein arginine methyltransferase 5
chr13_-_35892243 0.06 ENSDART00000002750
ENSDART00000122810
ENSDART00000162399
tacc3
transforming, acidic coiled-coil containing protein 3
chr19_+_3140313 0.06 ENSDART00000125504
zgc:86598
zgc:86598
chr23_-_545942 0.05 ENSDART00000105316
samhd1
SAM domain and HD domain 1
chr10_-_18468385 0.05 ENSDART00000183302
si:dkey-28o19.1
si:dkey-28o19.1
chr9_+_31075896 0.05 ENSDART00000188042
clybl
citrate lyase beta like
chr18_+_5308392 0.04 ENSDART00000179072
DUT
deoxyuridine triphosphatase
chr18_+_50525109 0.04 ENSDART00000098390
ubl7b
ubiquitin-like 7b (bone marrow stromal cell-derived)
chr9_-_9689367 0.04 ENSDART00000191820
gpr156
G protein-coupled receptor 156
chr23_-_26652273 0.04 ENSDART00000112124
ENSDART00000111029
hspg2
heparan sulfate proteoglycan 2
chr16_-_21692024 0.04 ENSDART00000123597
si:ch211-154o6.2
si:ch211-154o6.2
chr5_-_25733745 0.04 ENSDART00000051566
zgc:101016
zgc:101016
chr4_+_76671012 0.04 ENSDART00000005585
ms4a17a.2
membrane-spanning 4-domains, subfamily A, member 17a.2
chr1_-_45177373 0.04 ENSDART00000143142
ENSDART00000034549
zgc:111983
zgc:111983
chr1_-_16507812 0.03 ENSDART00000169081
mtmr7b
myotubularin related protein 7b
chr4_+_33012407 0.03 ENSDART00000151873
si:dkey-26h11.2
si:dkey-26h11.2
chr19_+_2631565 0.03 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr14_-_3944017 0.03 ENSDART00000055817
si:ch73-49o8.1
si:ch73-49o8.1
chr20_-_31308805 0.03 ENSDART00000147045
hpcal1
hippocalcin-like 1
chr11_-_29082429 0.03 ENSDART00000041443
igsf21a
immunoglobin superfamily, member 21a
chr5_-_38107741 0.03 ENSDART00000156853
si:ch211-284e13.14
si:ch211-284e13.14
chr4_+_10721795 0.03 ENSDART00000136000
ENSDART00000067253
stab2
stabilin 2
chr3_+_23092762 0.02 ENSDART00000142884
ENSDART00000024136
gngt2a
guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2a
chr5_-_8817458 0.02 ENSDART00000191098
fgf10b
fibroblast growth factor 10b
chr5_-_58840971 0.02 ENSDART00000050932
tmem136b
transmembrane protein 136b
chr21_-_3770636 0.02 ENSDART00000053596
scamp1
secretory carrier membrane protein 1
chr10_+_24504292 0.02 ENSDART00000090059
mtus2a
microtubule associated tumor suppressor candidate 2a
chr17_-_21617618 0.02 ENSDART00000109031
gpr26
G protein-coupled receptor 26
chr11_+_27973055 0.02 ENSDART00000135135
alpl
alkaline phosphatase, liver/bone/kidney
chr1_-_12126535 0.02 ENSDART00000164817
ENSDART00000015251
mttp
microsomal triglyceride transfer protein
chr5_-_8817841 0.02 ENSDART00000170921
fgf10b
fibroblast growth factor 10b
chr10_+_24504464 0.02 ENSDART00000141387
mtus2a
microtubule associated tumor suppressor candidate 2a
chr23_-_29553430 0.02 ENSDART00000157773
ENSDART00000126384
ube4b
ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
chr10_+_6013076 0.02 ENSDART00000167613
ENSDART00000159216
hmgcs1
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
chr12_-_13081229 0.01 ENSDART00000152510
ENSDART00000126866
ccser2b
coiled-coil serine-rich protein 2b
chr1_-_58064738 0.01 ENSDART00000073778
caspb
caspase b
chr21_-_20342096 0.01 ENSDART00000065659
rbp4l
retinol binding protein 4, like
chr17_-_31058900 0.01 ENSDART00000134998
ENSDART00000104307
ENSDART00000172721
eml1
echinoderm microtubule associated protein like 1
chr9_+_21990095 0.01 ENSDART00000146829
ENSDART00000133515
ENSDART00000193582
si:dkey-57a22.13
si:dkey-57a22.13
chr22_+_6740039 0.01 ENSDART00000144122
CT583625.2

chr18_+_33172634 0.01 ENSDART00000151519
si:ch73-125k17.2
si:ch73-125k17.2
chr21_-_20341836 0.01 ENSDART00000176689
rbp4l
retinol binding protein 4, like
chr15_-_8191992 0.01 ENSDART00000155381
ENSDART00000190714
bach1a
BTB and CNC homology 1, basic leucine zipper transcription factor 1 a
chr4_-_59152337 0.01 ENSDART00000156770
znf1149
zinc finger protein 1149
chr15_-_8191841 0.01 ENSDART00000156663
bach1a
BTB and CNC homology 1, basic leucine zipper transcription factor 1 a
chr20_-_9963713 0.01 ENSDART00000104234
gjd2b
gap junction protein delta 2b
chr3_+_15296824 0.01 ENSDART00000043801
cabp5b
calcium binding protein 5b
chr4_-_76488581 0.01 ENSDART00000174291
ftr51
finTRIM family, member 51
chr12_+_31729498 0.01 ENSDART00000188546
ENSDART00000182562
ENSDART00000186147
RNF157
si:dkey-49c17.3
chr9_-_38587275 0.01 ENSDART00000077446
si:dkey-101k6.5
si:dkey-101k6.5
chr4_+_55593843 0.01 ENSDART00000163356
znf1078
zinc finger protein 1078
chr4_+_36906436 0.01 ENSDART00000136773
BX537137.1

chr3_-_28828242 0.01 ENSDART00000151445
si:ch211-76l23.4
si:ch211-76l23.4
chr16_+_37876779 0.01 ENSDART00000140148
si:ch211-198c19.1
si:ch211-198c19.1
chr18_+_5172848 0.01 ENSDART00000190642
CABZ01080599.1

chr11_-_15090564 0.01 ENSDART00000162079
slc1a8a
solute carrier family 1 (glutamate transporter), member 8a
chr18_+_15182965 0.01 ENSDART00000137018
si:ch73-62b13.1
si:ch73-62b13.1
chr20_-_1141722 0.01 ENSDART00000152675
gabrr1
gamma-aminobutyric acid (GABA) A receptor, rho 1
chr23_+_44644911 0.01 ENSDART00000140799
zgc:85858
zgc:85858
chr7_+_18989241 0.01 ENSDART00000053213
zgc:194252
zgc:194252
chr25_+_11456696 0.00 ENSDART00000171408
AGBL1
si:ch73-141f14.1
chr15_+_45640906 0.00 ENSDART00000149361
ENSDART00000149079
sagb
S-antigen; retina and pineal gland (arrestin) b
chr4_-_42039794 0.00 ENSDART00000110313
si:dkeyp-85d8.5
si:dkeyp-85d8.5
chr25_-_32381642 0.00 ENSDART00000133872
ENSDART00000006124
cops2
COP9 signalosome subunit 2
chr1_+_33383644 0.00 ENSDART00000187194
dhrsx
dehydrogenase/reductase (SDR family) X-linked
chr4_+_40383229 0.00 ENSDART00000126906
ENSDART00000191198
si:ch211-218h8.1
si:ch211-218h8.1
chr10_+_21899753 0.00 ENSDART00000080155
hrh2b
histamine receptor H2b
chr7_-_54320088 0.00 ENSDART00000172396
fadd
Fas (tnfrsf6)-associated via death domain
chr14_+_11909966 0.00 ENSDART00000171829
frmpd3
FERM and PDZ domain containing 3
chr13_+_1726953 0.00 ENSDART00000103004
zmp:0000000760
zmp:0000000760
chr4_-_49133107 0.00 ENSDART00000150806
znf1146
zinc finger protein 1146
chr20_-_21672970 0.00 ENSDART00000133286
si:ch211-207i1.2
si:ch211-207i1.2

Network of associatons between targets according to the STRING database.

First level regulatory network of dmbx1a+dmbx1b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.0 0.1 GO:0097198 histone H3-K36 trimethylation(GO:0097198)
0.0 0.1 GO:1903069 regulation of ER-associated ubiquitin-dependent protein catabolic process(GO:1903069)
0.0 0.1 GO:0001954 positive regulation of cell-matrix adhesion(GO:0001954)
0.0 0.0 GO:0002566 somatic diversification of immune receptors via somatic mutation(GO:0002566) somatic hypermutation of immunoglobulin genes(GO:0016446)
0.0 0.1 GO:0034969 histone arginine methylation(GO:0034969)
0.0 0.1 GO:0070073 clustering of voltage-gated calcium channels(GO:0070073)
0.0 0.1 GO:0090179 establishment of planar polarity of embryonic epithelium(GO:0042249) establishment of planar polarity involved in neural tube closure(GO:0090177) regulation of establishment of planar polarity involved in neural tube closure(GO:0090178) planar cell polarity pathway involved in neural tube closure(GO:0090179)
0.0 0.0 GO:0061033 lung growth(GO:0060437) secretion by lung epithelial cell involved in lung growth(GO:0061033)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005521 lamin binding(GO:0005521)
0.0 0.1 GO:0000033 alpha-1,3-mannosyltransferase activity(GO:0000033)
0.0 0.1 GO:0005128 erythropoietin receptor binding(GO:0005128)
0.0 0.1 GO:0035243 protein-arginine omega-N symmetric methyltransferase activity(GO:0035243)
0.0 0.0 GO:0047777 (3S)-citramalyl-CoA lyase activity(GO:0047777)
0.0 0.1 GO:0004692 cGMP-dependent protein kinase activity(GO:0004692)
0.0 0.1 GO:0032052 bile acid binding(GO:0032052)
0.0 0.1 GO:0005105 type 1 fibroblast growth factor receptor binding(GO:0005105)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID CIRCADIAN PATHWAY Circadian rhythm pathway