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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for e2f3

Z-value: 0.48

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Transcription factors associated with e2f3

Gene Symbol Gene ID Gene Info
e2f3
ENSDARG00000070463 E2F transcription factor 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
e2f3dr11_v1_chr19_-_29294457_29294457-0.728.5e-04Click!

Activity profile of e2f3 motif

Sorted Z-values of e2f3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr25_-_4482449 1.58 ENSDART00000056278
ENSDART00000149425
slc25a22a
solute carrier family 25 member 22a
chr19_+_43604256 1.57 ENSDART00000151080
ENSDART00000110305
si:ch211-199g17.9
si:ch211-199g17.9
chr19_+_43604643 1.54 ENSDART00000151168
si:ch211-199g17.9
si:ch211-199g17.9
chr15_-_34056733 0.96 ENSDART00000170130
ENSDART00000188272
VWDE
si:dkey-30e9.7
chr3_-_61592417 0.84 ENSDART00000155082
nptx2a
neuronal pentraxin 2a
chr5_-_10946232 0.83 ENSDART00000163139
ENSDART00000031265
rtn4r
reticulon 4 receptor
chr3_-_53486169 0.82 ENSDART00000115243
soul5
heme-binding protein soul5
chr16_+_28728347 0.80 ENSDART00000149240
si:dkey-24i24.3
si:dkey-24i24.3
chr16_+_40575742 0.73 ENSDART00000161503
ccne2
cyclin E2
chr4_-_9909371 0.67 ENSDART00000102656
si:dkey-22l11.6
si:dkey-22l11.6
chr7_+_26534131 0.63 ENSDART00000173980
si:dkey-62k3.5
si:dkey-62k3.5
chr16_-_25085327 0.62 ENSDART00000077661
prss1
protease, serine 1
chr18_+_34861568 0.61 ENSDART00000192825
LO018333.1

chr16_-_21140097 0.57 ENSDART00000145837
ENSDART00000146500
si:dkey-271j15.3
si:dkey-271j15.3
chr24_-_38657683 0.54 ENSDART00000154843
si:ch1073-164k15.3
si:ch1073-164k15.3
chr24_+_39108243 0.53 ENSDART00000156353
mss51
MSS51 mitochondrial translational activator
chr15_-_14884332 0.52 ENSDART00000165237
si:ch211-24o8.4
si:ch211-24o8.4
chr1_-_42289704 0.51 ENSDART00000150124
si:ch211-71k14.1
si:ch211-71k14.1
chr1_-_9980765 0.48 ENSDART00000142906
si:dkeyp-75b4.7
si:dkeyp-75b4.7
chr13_+_13033837 0.43 ENSDART00000079558
letm1
leucine zipper-EF-hand containing transmembrane protein 1
chr23_-_18913032 0.34 ENSDART00000136678
si:ch211-209j10.6
si:ch211-209j10.6
chr3_+_38540411 0.33 ENSDART00000154943
si:dkey-7f16.3
si:dkey-7f16.3
chr17_-_29224908 0.30 ENSDART00000156288
si:dkey-28g23.6
si:dkey-28g23.6
chr21_-_26490186 0.29 ENSDART00000009889
zgc:110540
zgc:110540
chr15_+_33991928 0.27 ENSDART00000170177
vwde
von Willebrand factor D and EGF domains
chr1_+_9886991 0.25 ENSDART00000135702
rgs11
regulator of G protein signaling 11
chr16_+_11188810 0.23 ENSDART00000186011
cicb
capicua transcriptional repressor b
chr19_+_636886 0.23 ENSDART00000149192
tert
telomerase reverse transcriptase
chr25_+_36339867 0.20 ENSDART00000152195
si:ch211-113a14.18
si:ch211-113a14.18
chr18_-_48983690 0.19 ENSDART00000182359
FO681288.3

chr6_+_54142311 0.17 ENSDART00000154115
hmga1b
high mobility group AT-hook 1b
chr5_+_66433287 0.15 ENSDART00000170757
kntc1
kinetochore associated 1
chr1_+_36722122 0.14 ENSDART00000111566
tmem184c
transmembrane protein 184C
chr8_+_23355484 0.13 ENSDART00000085361
ENSDART00000125729
dnmt3ba
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a
chr3_-_10612186 0.13 ENSDART00000191034
map2k4a
mitogen-activated protein kinase kinase 4a
chr15_-_2954443 0.13 ENSDART00000161053
zgc:153184
zgc:153184
chr19_-_6988837 0.12 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr22_+_1028724 0.12 ENSDART00000149625
si:ch73-352p18.4
si:ch73-352p18.4
chr23_-_44219902 0.11 ENSDART00000185874
zgc:158659
zgc:158659
chr22_-_20259309 0.09 ENSDART00000139160
si:dkey-110c1.10
si:dkey-110c1.10
chr9_-_7213772 0.09 ENSDART00000174720
ENSDART00000092435
mgat4a
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A
chr19_+_2546775 0.08 ENSDART00000148527
ENSDART00000097528
sp4
sp4 transcription factor
chr19_-_10214264 0.07 ENSDART00000053300
ENSDART00000148225
znf865
zinc finger protein 865
chr14_+_904850 0.06 ENSDART00000161847
si:ch73-208h1.1
si:ch73-208h1.1
chr11_+_41936435 0.06 ENSDART00000173103
aldh4a1
aldehyde dehydrogenase 4 family, member A1
chr5_+_64732270 0.06 ENSDART00000134241
olfm1a
olfactomedin 1a
chr25_+_6451038 0.06 ENSDART00000009971
snx33
sorting nexin 33
chr7_-_43857938 0.03 ENSDART00000183602
cdh11
cadherin 11, type 2, OB-cadherin (osteoblast)
chr17_-_465285 0.02 ENSDART00000168718
chrm5a
cholinergic receptor, muscarinic 5a
chr1_-_46663997 0.01 ENSDART00000134450
ebpl
emopamil binding protein-like

Network of associatons between targets according to the STRING database.

First level regulatory network of e2f3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 3.1 GO:0070193 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.2 1.6 GO:0015810 acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490)
0.1 0.4 GO:0034214 protein hexamerization(GO:0034214)
0.1 0.2 GO:0007571 age-dependent general metabolic decline(GO:0007571)
0.0 0.8 GO:0048936 peripheral nervous system neuron axonogenesis(GO:0048936)
0.0 0.7 GO:1904029 regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0000079) regulation of cyclin-dependent protein kinase activity(GO:1904029)
0.0 0.1 GO:0010133 proline catabolic process to glutamate(GO:0010133)
0.0 0.8 GO:0051966 regulation of synaptic transmission, glutamatergic(GO:0051966)
0.0 0.2 GO:0016584 nucleosome positioning(GO:0016584)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0097134 cyclin E1-CDK2 complex(GO:0097134)
0.1 3.1 GO:0000795 synaptonemal complex(GO:0000795)
0.1 0.2 GO:0000333 telomerase catalytic core complex(GO:0000333)
0.0 0.1 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.6 GO:0015183 L-aspartate transmembrane transporter activity(GO:0015183)
0.1 0.4 GO:0051139 calcium:proton antiporter activity(GO:0015369) metal ion:proton antiporter activity(GO:0051139)
0.1 0.2 GO:0003721 telomerase RNA reverse transcriptase activity(GO:0003721)
0.1 0.8 GO:0048495 Roundabout binding(GO:0048495)
0.0 0.3 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 0.1 GO:0008545 JUN kinase kinase activity(GO:0008545)
0.0 0.7 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.1 GO:0052812 phosphatidylinositol-4,5-bisphosphate 3-kinase activity(GO:0046934) phosphatidylinositol-3,4-bisphosphate 5-kinase activity(GO:0052812)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.0 0.8 PID P75 NTR PATHWAY p75(NTR)-mediated signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX Genes involved in Degradation of the extracellular matrix
0.0 0.7 REACTOME SCFSKP2 MEDIATED DEGRADATION OF P27 P21 Genes involved in SCF(Skp2)-mediated degradation of p27/p21