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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for ebf3a-2+ebf3b

Z-value: 0.38

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Transcription factors associated with ebf3a-2+ebf3b

Gene Symbol Gene ID Gene Info
ebf3b
ENSDARG00000091287 EBF transcription factor 3b
ebf3a-2
ENSDARG00000100244 EBF transcription factor 3a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ebf3adr11_v1_chr12_+_42574148_425741480.302.2e-01Click!
ebf3bdr11_v1_chr17_-_20229812_202298120.029.5e-01Click!

Activity profile of ebf3a-2+ebf3b motif

Sorted Z-values of ebf3a-2+ebf3b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr22_+_11756040 0.65 ENSDART00000105808
krt97
keratin 97
chr22_+_11775269 0.37 ENSDART00000140272
krt96
keratin 96
chr19_-_8880688 0.34 ENSDART00000039629
celf3a
cugbp, Elav-like family member 3a
chr25_+_4541211 0.31 ENSDART00000129978
pnpla2
patatin-like phospholipase domain containing 2
chr22_-_20761759 0.31 ENSDART00000013803
amh
anti-Mullerian hormone
chr13_-_4018888 0.30 ENSDART00000058238
tjap1
tight junction associated protein 1 (peripheral)
chr16_-_32013913 0.23 ENSDART00000030282
ENSDART00000138701
gstk1
glutathione S-transferase kappa 1
chr19_+_19786117 0.21 ENSDART00000167757
ENSDART00000163546
hoxa1a
homeobox A1a
chr15_+_37559570 0.21 ENSDART00000085522
hspb6
heat shock protein, alpha-crystallin-related, b6
chr17_-_30521043 0.20 ENSDART00000087111
itsn2b
intersectin 2b
chr6_+_7250824 0.20 ENSDART00000177226
dzip1
DAZ interacting zinc finger protein 1
chr14_-_36397768 0.20 ENSDART00000185199
ENSDART00000052562
spata4
spermatogenesis associated 4
chr9_-_36924388 0.19 ENSDART00000059756
ralba
v-ral simian leukemia viral oncogene homolog Ba (ras related)
chr10_-_42237304 0.19 ENSDART00000140341
tcf7l1a
transcription factor 7 like 1a
chr17_+_17955063 0.19 ENSDART00000104999
ccdc85ca
coiled-coil domain containing 85C, a
chr22_-_18387059 0.19 ENSDART00000007769
tssk6
testis-specific serine kinase 6
chr3_-_3496738 0.18 ENSDART00000186849
CABZ01040998.1

chr5_-_19052184 0.18 ENSDART00000133330
fam214b
family with sequence similarity 214, member B
chr25_-_21716326 0.18 ENSDART00000152011
DOCK4 (1 of many)
si:dkey-81e3.1
chr20_+_25711718 0.17 ENSDART00000033436
cep135
centrosomal protein 135
chr11_-_25324534 0.17 ENSDART00000158598
si:ch211-232b12.5
si:ch211-232b12.5
chr6_+_54711306 0.17 ENSDART00000074605
pkp1b
plakophilin 1b
chr11_-_3308569 0.16 ENSDART00000036581
cdk2
cyclin-dependent kinase 2
chr1_+_15062 0.16 ENSDART00000169005
cep97
centrosomal protein 97
chr13_-_31452516 0.16 ENSDART00000193268
rtn1a
reticulon 1a
chr12_+_34763795 0.16 ENSDART00000153097
slc38a10
solute carrier family 38, member 10
chr4_+_37992753 0.16 ENSDART00000193890
CR759843.2

chr20_+_18209895 0.15 ENSDART00000111063
kctd1
potassium channel tetramerization domain containing 1
chr6_+_45932276 0.14 ENSDART00000103491
rbp7b
retinol binding protein 7b, cellular
chr2_-_37465517 0.14 ENSDART00000139983
si:dkey-57k2.6
si:dkey-57k2.6
chr10_+_31809226 0.14 ENSDART00000087898
foxo1b
forkhead box O1 b
chr2_-_10563576 0.14 ENSDART00000185818
ENSDART00000190887
ccdc18
coiled-coil domain containing 18
chr13_+_17694845 0.13 ENSDART00000079778
ifit8
interferon-induced protein with tetratricopeptide repeats 8
chr3_-_55328548 0.12 ENSDART00000082944
dock6
dedicator of cytokinesis 6
chr16_-_36834505 0.12 ENSDART00000141275
ENSDART00000139588
ENSDART00000041993
pnp4b
purine nucleoside phosphorylase 4b
chr11_-_22303678 0.12 ENSDART00000159527
ENSDART00000159681
tfeb
transcription factor EB
chr1_-_191971 0.12 ENSDART00000164091
ENSDART00000159237
grtp1a
growth hormone regulated TBC protein 1a
chr17_+_24222190 0.12 ENSDART00000181698
ENSDART00000189411
ehbp1
EH domain binding protein 1
chr23_-_36003282 0.12 ENSDART00000103150
calcoco1a
calcium binding and coiled-coil domain 1a
chr4_-_760560 0.11 ENSDART00000103601
agbl5
ATP/GTP binding protein-like 5
chr11_+_3308656 0.11 ENSDART00000082458
sarnp
SAP domain containing ribonucleoprotein
chr7_+_17063761 0.11 ENSDART00000182880
htatip2
HIV-1 Tat interactive protein 2
chr2_-_55317035 0.11 ENSDART00000169382
ENSDART00000097874
tpm4b
tropomyosin 4b
chr24_+_32472155 0.11 ENSDART00000098859
neurod6a
neuronal differentiation 6a
chr7_-_33949246 0.10 ENSDART00000173513
pias1a
protein inhibitor of activated STAT, 1a
chr20_+_38201644 0.10 ENSDART00000022694
ehd3
EH-domain containing 3
chr8_-_21988833 0.10 ENSDART00000167708
nphp4
nephronophthisis 4
chr7_+_38811800 0.10 ENSDART00000052322
zgc:110699
zgc:110699
chr1_-_35924495 0.10 ENSDART00000184424
smad1
SMAD family member 1
chr23_-_36418059 0.10 ENSDART00000135232
znf740b
zinc finger protein 740b
chr19_+_10979983 0.10 ENSDART00000142975
si:ch1073-70f20.1
si:ch1073-70f20.1
chr6_+_40794015 0.10 ENSDART00000144479
gata2b
GATA binding protein 2b
chr19_-_10043142 0.10 ENSDART00000193016
grin2da
glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a
chr1_+_36911471 0.09 ENSDART00000148640
arhgap10
Rho GTPase activating protein 10
chr24_+_27023616 0.09 ENSDART00000089541
dip2ca
disco-interacting protein 2 homolog Ca
chr15_-_1941042 0.09 ENSDART00000112946
ENSDART00000155504
dock10
dedicator of cytokinesis 10
chr16_-_34212912 0.08 ENSDART00000145017
phactr4b
phosphatase and actin regulator 4b
chr24_+_25794318 0.08 ENSDART00000143395
sh3kbp1
SH3-domain kinase binding protein 1
chr24_+_3972260 0.08 ENSDART00000131753
pfkpa
phosphofructokinase, platelet a
chr20_+_6590220 0.08 ENSDART00000136567
tns3.2
tensin 3, tandem duplicate 2
chr13_+_502230 0.08 ENSDART00000013007
degs1
delta(4)-desaturase, sphingolipid 1
chr10_-_27199135 0.08 ENSDART00000189511
ENSDART00000180314
auts2a
autism susceptibility candidate 2a
chr9_-_98982 0.08 ENSDART00000147882
lims2
LIM and senescent cell antigen-like domains 2
chr10_-_5022176 0.08 ENSDART00000148277
hnrnpdl
heterogeneous nuclear ribonucleoprotein D-like
chr16_-_30927764 0.07 ENSDART00000156804
slc45a4
solute carrier family 45, member 4
chr5_-_25174420 0.07 ENSDART00000141554
abca2
ATP-binding cassette, sub-family A (ABC1), member 2
chr16_-_47245563 0.07 ENSDART00000190225
LO017877.2

chr6_+_102506 0.07 ENSDART00000172678
ldlrb
low density lipoprotein receptor b
chr3_+_13559199 0.07 ENSDART00000166547
si:ch73-106n3.1
si:ch73-106n3.1
chr5_-_31773208 0.07 ENSDART00000137556
ENSDART00000122066
fam102ab
family with sequence similarity 102, member Ab
chr19_+_9459050 0.07 ENSDART00000186419
si:ch211-288g17.3
si:ch211-288g17.3
chr9_-_33081781 0.07 ENSDART00000165748
zgc:172053
zgc:172053
chr17_+_25955003 0.07 ENSDART00000156029
grid1a
glutamate receptor, ionotropic, delta 1a
chr23_+_19814371 0.07 ENSDART00000182897
emd
emerin (Emery-Dreifuss muscular dystrophy)
chr9_+_56443416 0.07 ENSDART00000167947
CABZ01079480.1

chr20_+_46371458 0.07 ENSDART00000152912
adgrg11
adhesion G protein-coupled receptor G11
chr8_-_33154677 0.07 ENSDART00000133300
zbtb34
zinc finger and BTB domain containing 34
chr16_-_35952789 0.06 ENSDART00000180118
eva1ba
eva-1 homolog Ba (C. elegans)
chr12_-_46176115 0.06 ENSDART00000152848
si:ch211-226h7.8
si:ch211-226h7.8
chr17_+_53425730 0.06 ENSDART00000127617
fabp10b
fatty acid binding protein 10b, liver basic
chr20_-_53321499 0.06 ENSDART00000179894
ENSDART00000127427
ENSDART00000084952
wasf1
WAS protein family, member 1
chr17_+_26352372 0.06 ENSDART00000155177
grid1a
glutamate receptor, ionotropic, delta 1a
chr17_-_22324727 0.06 ENSDART00000160341
CU104709.1

chr13_+_33368140 0.06 ENSDART00000033848
brf1a
BRF1, RNA polymerase III transcription initiation factor a
chr8_+_30671060 0.06 ENSDART00000193749
adora2aa
adenosine A2a receptor a
chr23_+_35672542 0.06 ENSDART00000046268
pmelb
premelanosome protein b
chr9_+_32930622 0.06 ENSDART00000100928
cnga4
cyclic nucleotide gated channel alpha 4
chr4_+_29344957 0.05 ENSDART00000185164
CR847895.1

chr3_-_28665291 0.05 ENSDART00000151670
fbxl16
F-box and leucine-rich repeat protein 16
chr15_-_23936276 0.05 ENSDART00000137569
appbp2
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr25_-_20523927 0.05 ENSDART00000114448
si:ch211-269c21.2
si:ch211-269c21.2
chr11_+_13071645 0.05 ENSDART00000162259
zfyve9b
zinc finger, FYVE domain containing 9b
chr2_+_38608290 0.05 ENSDART00000159066
cdh24b
cadherin 24, type 2b
chr2_-_30987538 0.04 ENSDART00000148157
emilin2a
elastin microfibril interfacer 2a
chr4_-_30712588 0.04 ENSDART00000142393
si:dkey-16p19.5
si:dkey-16p19.5
chr17_+_45454943 0.04 ENSDART00000074838
kcnk3b
potassium channel, subfamily K, member 3b
chr25_+_31323978 0.04 ENSDART00000067030
lsp1
lymphocyte-specific protein 1
chr25_+_34915576 0.04 ENSDART00000073441
sntb2
syntrophin, beta 2
chr25_-_13549577 0.04 ENSDART00000166772
ano10b
anoctamin 10b
chr7_+_39410180 0.04 ENSDART00000168641
CT030188.1

chr19_+_1370504 0.03 ENSDART00000158946
dgat1a
diacylglycerol O-acyltransferase 1a
chr25_+_9003230 0.03 ENSDART00000180330
ENSDART00000142917
rag1
recombination activating gene 1
chr3_-_55649319 0.03 ENSDART00000176127
axin2
axin 2 (conductin, axil)
chr13_-_40316367 0.03 ENSDART00000009343
pyroxd2
pyridine nucleotide-disulphide oxidoreductase domain 2
chr4_-_38259998 0.03 ENSDART00000172389
znf1093
zinc finger protein 1093
chr6_+_55277419 0.03 ENSDART00000083670
CABZ01041604.1

chr4_-_28958601 0.03 ENSDART00000111294
zgc:174315
zgc:174315
chr2_+_37110504 0.03 ENSDART00000132794
ENSDART00000042974
slc1a8b
solute carrier family 1 (glutamate transporter), member 8b
chr6_-_42036685 0.03 ENSDART00000155174
GPR62 (1 of many)
si:dkeyp-111e5.4
chr21_-_37194365 0.03 ENSDART00000100286
fgfr4
fibroblast growth factor receptor 4
chr24_-_13364311 0.03 ENSDART00000183808
KCNB2
si:dkey-192j17.1
chr10_-_5016997 0.03 ENSDART00000101414
hnrnpd
heterogeneous nuclear ribonucleoprotein D
chr23_+_16948049 0.02 ENSDART00000139449
si:dkey-147f3.4
si:dkey-147f3.4
chr15_+_1372343 0.02 ENSDART00000152285
schip1
schwannomin interacting protein 1
chr2_-_32457919 0.02 ENSDART00000132792
ENSDART00000041319
slc4a2a
solute carrier family 4 (anion exchanger), member 2a
chr8_-_25422186 0.02 ENSDART00000113492
ENSDART00000131736
kcnq2a
potassium voltage-gated channel, KQT-like subfamily, member 2a
chr4_-_69127091 0.02 ENSDART00000136092
si:ch211-209j12.3
si:ch211-209j12.3
chr2_-_10943093 0.02 ENSDART00000148999
ssbp3a
single stranded DNA binding protein 3a
chr16_-_47483142 0.02 ENSDART00000147072
cthrc1b
collagen triple helix repeat containing 1b
chr11_-_27501027 0.02 ENSDART00000065889
wnt7aa
wingless-type MMTV integration site family, member 7Aa
chr18_+_40471826 0.02 ENSDART00000098806
ugt5c3
UDP glucuronosyltransferase 5 family, polypeptide C3
chr10_+_158590 0.02 ENSDART00000081982
KCNJ15
potassium voltage-gated channel subfamily J member 15
chr24_+_7800486 0.02 ENSDART00000145504
ptprh
protein tyrosine phosphatase, receptor type, h
chr1_+_56873359 0.02 ENSDART00000152713
si:ch211-152f2.2
si:ch211-152f2.2
chr8_-_1051438 0.02 ENSDART00000067093
ENSDART00000170737
smyd1b
SET and MYND domain containing 1b
chr3_-_25813426 0.01 ENSDART00000039482
ntn1b
netrin 1b
chr13_-_13751017 0.01 ENSDART00000180182
ky
kyphoscoliosis peptidase
chr23_-_5683147 0.01 ENSDART00000102766
ENSDART00000067351
tnnt2a
troponin T type 2a (cardiac)
chr14_+_22129096 0.01 ENSDART00000132514
ccng1
cyclin G1
chr6_-_40697585 0.01 ENSDART00000113196
si:ch211-157b11.14
si:ch211-157b11.14
chr15_+_35718354 0.01 ENSDART00000110003
nyap2a
neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2a
chr17_+_38566717 0.01 ENSDART00000145147
sptb
spectrin, beta, erythrocytic
chr9_-_7673856 0.01 ENSDART00000102715
tuba8l3
tubulin, alpha 8 like 3
chr6_-_49673476 0.01 ENSDART00000112226
apcdd1l
adenomatosis polyposis coli down-regulated 1-like
chr13_+_17702522 0.01 ENSDART00000057913
si:dkey-27m7.4
si:dkey-27m7.4
chr7_-_52558495 0.01 ENSDART00000138263
ENSDART00000009938
ENSDART00000174292
ENSDART00000174218
ENSDART00000174335
tcf12
transcription factor 12
chr2_-_144393 0.01 ENSDART00000156008
adcy1b
adenylate cyclase 1b
chr21_-_37194839 0.01 ENSDART00000175126
fgfr4
fibroblast growth factor receptor 4
chr5_+_32141790 0.01 ENSDART00000041504
tescb
tescalcin b
chr5_-_31772559 0.01 ENSDART00000183879
fam102ab
family with sequence similarity 102, member Ab
chr4_+_18782840 0.01 ENSDART00000146450
slc26a4
solute carrier family 26 (anion exchanger), member 4
chr13_+_17702853 0.01 ENSDART00000145438
si:dkey-27m7.4
si:dkey-27m7.4
chr16_-_36093776 0.01 ENSDART00000159134
OSCP1
organic solute carrier partner 1
chr5_+_23634665 0.01 ENSDART00000125161
cx39.9
connexin 39.9
chr24_-_27400017 0.01 ENSDART00000145829
ccl34b.1
chemokine (C-C motif) ligand 34b, duplicate 1
chr3_+_50310684 0.01 ENSDART00000112152
gas7a
growth arrest-specific 7a
chr22_-_23253481 0.01 ENSDART00000054807
lhx9
LIM homeobox 9
chr7_+_39410393 0.01 ENSDART00000158561
ENSDART00000185173
CT030188.1

chr23_+_21459263 0.01 ENSDART00000104209
her4.3
hairy-related 4, tandem duplicate 3
chr20_+_2039518 0.01 ENSDART00000043157
CABZ01088134.1

chr17_-_33407843 0.01 ENSDART00000129416
BX323819.1

chr21_-_37194669 0.01 ENSDART00000192748
fgfr4
fibroblast growth factor receptor 4
chr18_+_6054816 0.01 ENSDART00000113668
si:ch73-386h18.1
si:ch73-386h18.1
chr24_+_1294176 0.01 ENSDART00000106637
si:ch73-134f24.1
si:ch73-134f24.1
chr21_-_24632778 0.01 ENSDART00000132533
ENSDART00000058370
arhgap32b
Rho GTPase activating protein 32b
chr3_+_4266289 0.00 ENSDART00000101636
si:dkey-73p2.1
si:dkey-73p2.1
chr23_-_1144425 0.00 ENSDART00000098271
psmb11b
proteasome subunit beta11b
chr4_+_5193198 0.00 ENSDART00000067388
fgf23
fibroblast growth factor 23
chr18_+_30441740 0.00 ENSDART00000189074
gse1
Gse1 coiled-coil protein
chr25_+_9003879 0.00 ENSDART00000186228
rag1
recombination activating gene 1
chr15_+_16521785 0.00 ENSDART00000062191
galnt17
polypeptide N-acetylgalactosaminyltransferase 17
chr13_-_31622195 0.00 ENSDART00000057432
six1a
SIX homeobox 1a
chr18_+_15616167 0.00 ENSDART00000080454
slc17a8
solute carrier family 17 (vesicular glutamate transporter), member 8
chr5_-_29112956 0.00 ENSDART00000132726
whrnb
whirlin b
chr17_+_25187226 0.00 ENSDART00000148431
cln8
CLN8, transmembrane ER and ERGIC protein
chr8_+_8196087 0.00 ENSDART00000026965
plxnb3
plexin B3
chr3_+_4113551 0.00 ENSDART00000192309
LO018551.1

chr24_+_4977862 0.00 ENSDART00000114537
zic4
zic family member 4
chr17_+_25187670 0.00 ENSDART00000190873
cln8
CLN8, transmembrane ER and ERGIC protein
chr7_+_7630409 0.00 ENSDART00000172934
clcn3
chloride channel 3
chr20_+_34933183 0.00 ENSDART00000062738
snap25a
synaptosomal-associated protein, 25a
chr8_+_26293673 0.00 ENSDART00000144977
mgll
monoglyceride lipase

Network of associatons between targets according to the STRING database.

First level regulatory network of ebf3a-2+ebf3b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0032369 negative regulation of lipid transport(GO:0032369)
0.1 0.3 GO:0010898 regulation of triglyceride catabolic process(GO:0010896) positive regulation of triglyceride catabolic process(GO:0010898)
0.0 0.2 GO:0060829 negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060829)
0.0 0.2 GO:0010457 centriole-centriole cohesion(GO:0010457)
0.0 0.2 GO:0045110 intermediate filament bundle assembly(GO:0045110)
0.0 0.1 GO:0035608 protein deglutamylation(GO:0035608)
0.0 0.1 GO:2000096 positive regulation of Wnt signaling pathway, planar cell polarity pathway(GO:2000096)
0.0 0.3 GO:0048026 positive regulation of mRNA splicing, via spliceosome(GO:0048026)
0.0 0.2 GO:0006607 NLS-bearing protein import into nucleus(GO:0006607)
0.0 0.0 GO:0070857 regulation of bile acid biosynthetic process(GO:0070857) regulation of bile acid metabolic process(GO:1904251)
0.0 0.1 GO:0061469 regulation of type B pancreatic cell proliferation(GO:0061469)
0.0 0.1 GO:2001045 negative regulation of integrin-mediated signaling pathway(GO:2001045)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030332 cyclin binding(GO:0030332)
0.0 0.1 GO:0034046 poly(G) binding(GO:0034046)
0.0 0.0 GO:0005252 open rectifier potassium channel activity(GO:0005252)
0.0 0.1 GO:0004731 purine-nucleoside phosphorylase activity(GO:0004731)
0.0 0.3 GO:0004806 triglyceride lipase activity(GO:0004806)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 PID ALK2 PATHWAY ALK2 signaling events
0.0 0.2 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.