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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for evx2

Z-value: 0.51

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Transcription factors associated with evx2

Gene Symbol Gene ID Gene Info
evx2
ENSDARG00000059255 even-skipped homeobox 2

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
evx2dr11_v1_chr9_+_2002701_2002701-0.865.4e-06Click!

Activity profile of evx2 motif

Sorted Z-values of evx2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr2_-_21819421 0.94 ENSDART00000121586
chd7
chromodomain helicase DNA binding protein 7
chr7_+_22313533 0.93 ENSDART00000123457
TMEM102
si:dkey-11f12.2
chr25_-_6049339 0.92 ENSDART00000075184
snx1a
sorting nexin 1a
chr5_+_22067570 0.75 ENSDART00000045574
shisa2a
shisa family member 2a
chr5_-_67241633 0.74 ENSDART00000114783
clip1a
CAP-GLY domain containing linker protein 1a
chr14_+_21820034 0.66 ENSDART00000122739
ctbp1
C-terminal binding protein 1
chr8_-_15129573 0.66 ENSDART00000142358
bcar3
BCAR3, NSP family adaptor protein
chr22_-_21897203 0.64 ENSDART00000158501
ENSDART00000105566
ENSDART00000136795
gna11a
guanine nucleotide binding protein (G protein), alpha 11a (Gq class)
chr11_+_5588122 0.63 ENSDART00000113281
zgc:172302
zgc:172302
chr21_-_13662237 0.52 ENSDART00000091647
ENSDART00000151547
pnpla7a
patatin-like phospholipase domain containing 7a
chr24_-_25004553 0.49 ENSDART00000080997
ENSDART00000136860
zdhhc20b
zinc finger, DHHC-type containing 20b
chr15_-_18115540 0.49 ENSDART00000131639
ENSDART00000047902
arcn1b
archain 1b
chr13_-_9236905 0.46 ENSDART00000142597
ENSDART00000147176
ENSDART00000181670
HTRA2 (1 of many)
si:dkey-112g5.12
si:dkey-33c12.12
si:dkey-112g5.12
chr5_+_19933356 0.42 ENSDART00000088819
ankrd13a
ankyrin repeat domain 13A
chr21_+_4410733 0.38 ENSDART00000136831
ENSDART00000131612
HTRA2 (1 of many)
si:dkey-84o3.7
chr13_-_9213207 0.34 ENSDART00000139861
ENSDART00000140524
HTRA2 (1 of many)
si:dkey-33c12.11
chr13_-_9257728 0.31 ENSDART00000145985
ENSDART00000169991
ENSDART00000132764
HTRA2 (1 of many)
zgc:173425
chr21_+_4328348 0.30 ENSDART00000131658
ENSDART00000143799
HTRA2 (1 of many)
si:dkey-84o3.7
chr13_+_9521629 0.30 ENSDART00000149870
ENSDART00000137666
si:dkey-19p15.4
si:dkey-19p15.4
chr13_-_9111927 0.28 ENSDART00000133815
ENSDART00000109783
ENSDART00000142540
ENSDART00000192613
HTRA2 (1 of many)
si:dkey-112g5.12
si:dkey-19p15.4
si:dkey-112g5.12
chr9_-_3934963 0.26 ENSDART00000062336
ubr3
ubiquitin protein ligase E3 component n-recognin 3
chr13_-_9159852 0.24 ENSDART00000170185
ENSDART00000158697
ENSDART00000143393
ENSDART00000164973
ENSDART00000159910
HTRA2 (1 of many)
si:dkey-112g5.16
chr5_-_25733745 0.23 ENSDART00000051566
zgc:101016
zgc:101016
chr21_+_4429001 0.23 ENSDART00000134520
HTRA2 (1 of many)
si:dkey-84o3.6
chr13_-_9184132 0.22 ENSDART00000135289
ENSDART00000136309
ENSDART00000132630
HTRA2 (1 of many)
si:dkey-33c12.10
chr10_+_34175476 0.20 ENSDART00000102123
zgc:174193
zgc:174193
chr13_+_9468535 0.20 ENSDART00000135088
ENSDART00000164270
ENSDART00000099619
ENSDART00000164656
HTRA2 (1 of many)
si:dkey-265c15.6
chr13_-_9070754 0.19 ENSDART00000143783
ENSDART00000102121
ENSDART00000140820
ENSDART00000184210
si:dkey-112g5.12
si:dkey-112g5.12
chr21_+_4348600 0.19 ENSDART00000138463
HTRA2 (1 of many)
si:dkey-84o3.2
chr13_-_9091354 0.18 ENSDART00000140319
ENSDART00000142697
HTRA2 (1 of many)
si:dkey-112g5.13
chr13_-_9045879 0.18 ENSDART00000155463
ENSDART00000140041
ENSDART00000137454
si:dkey-112g5.11
si:dkey-112g5.11
chr17_-_5426458 0.16 ENSDART00000157937
supt3h
SPT3 homolog, SAGA and STAGA complex component
chr21_-_13661631 0.16 ENSDART00000184408
pnpla7a
patatin-like phospholipase domain containing 7a
chr21_+_4368735 0.11 ENSDART00000182817
CT027677.1

chr19_-_19379084 0.10 ENSDART00000165206
smarcc1b
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b
chr13_+_9496748 0.08 ENSDART00000147050
ENSDART00000102120
CR848040.4

chr11_+_29790626 0.06 ENSDART00000067822
dynlt3
dynein, light chain, Tctex-type 3
chr2_-_26720854 0.06 ENSDART00000148110
si:dkey-181m9.8
si:dkey-181m9.8
chr9_+_56194410 0.05 ENSDART00000168530
LO018176.1

chr3_+_23692462 0.04 ENSDART00000145934
hoxb7a
homeobox B7a
chr5_-_58112032 0.02 ENSDART00000016418
drd2b
dopamine receptor D2b
chr25_+_19666621 0.01 ENSDART00000112746
zgc:171459
zgc:171459

Network of associatons between targets according to the STRING database.

First level regulatory network of evx2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0034498 early endosome to Golgi transport(GO:0034498)
0.1 0.7 GO:0031116 positive regulation of microtubule polymerization(GO:0031116)
0.1 0.5 GO:0051645 Golgi localization(GO:0051645)
0.1 0.9 GO:0048796 rRNA transcription(GO:0009303) swim bladder maturation(GO:0048796) swim bladder inflation(GO:0048798)
0.1 0.6 GO:0033700 phospholipid efflux(GO:0033700)
0.1 0.3 GO:0071596 ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0 0.7 GO:0033138 positive regulation of peptidyl-serine phosphorylation(GO:0033138)
0.0 0.7 GO:0060158 phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)
0.0 0.5 GO:0018231 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.7 GO:0048384 retinoic acid receptor signaling pathway(GO:0048384)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.9 GO:0030904 retromer complex(GO:0030904)
0.0 0.5 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.7 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.2 GO:0030914 STAGA complex(GO:0030914)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0090554 phospholipid-translocating ATPase activity(GO:0004012) phosphatidylcholine-translocating ATPase activity(GO:0090554) phosphatidylserine-translocating ATPase activity(GO:0090556)
0.1 0.6 GO:0031826 type 2A serotonin receptor binding(GO:0031826)
0.0 0.7 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.9 GO:0003678 DNA helicase activity(GO:0003678)
0.0 0.5 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.9 PID WNT NONCANONICAL PATHWAY Noncanonical Wnt signaling pathway
0.0 0.7 PID ATM PATHWAY ATM pathway
0.0 0.7 PID CDC42 REG PATHWAY Regulation of CDC42 activity