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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for grhl1

Z-value: 0.65

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Transcription factors associated with grhl1

Gene Symbol Gene ID Gene Info
grhl1
ENSDARG00000061391 grainyhead-like transcription factor 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
grhl1dr11_v1_chr17_-_32426392_324264130.857.7e-06Click!

Activity profile of grhl1 motif

Sorted Z-values of grhl1 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr4_-_9780931 1.93 ENSDART00000134280
ENSDART00000150664
ENSDART00000150304
ENSDART00000080744
svopl
SVOP-like
chr22_-_22337382 1.78 ENSDART00000144684
si:ch211-129c21.1
si:ch211-129c21.1
chr2_-_58075414 1.59 ENSDART00000161920
nectin4
nectin cell adhesion molecule 4
chr2_-_47620806 1.52 ENSDART00000038228
ap1s3b
adaptor-related protein complex 1, sigma 3 subunit, b
chr1_-_9858508 1.45 ENSDART00000147904
mad1l1
mitotic arrest deficient 1 like 1
chr25_-_24202576 1.38 ENSDART00000048507
uevld
UEV and lactate/malate dehyrogenase domains
chr16_+_35905031 1.38 ENSDART00000162411
sh3d21
SH3 domain containing 21
chr14_-_33945692 1.25 ENSDART00000168546
ENSDART00000189778
zdhhc24
zinc finger, DHHC-type containing 24
chr20_-_43346049 1.24 ENSDART00000152888
afdna
afadin, adherens junction formation factor a
chr4_-_14954327 1.21 ENSDART00000182729
slc26a5
solute carrier family 26 (anion exchanger), member 5
chr10_-_36793412 1.18 ENSDART00000185966
dhrs13a.2
dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2
chr9_-_30264415 1.18 ENSDART00000060150
mid1ip1a
MID1 interacting protein 1a
chr17_+_28102487 1.18 ENSDART00000131638
ENSDART00000076265
zgc:91908
zgc:91908
chr1_-_31105376 1.16 ENSDART00000132466
ppp1r9alb
protein phosphatase 1 regulatory subunit 9A-like B
chr4_-_14954029 1.05 ENSDART00000038642
slc26a5
solute carrier family 26 (anion exchanger), member 5
chr21_-_3700334 1.05 ENSDART00000137844
atp8b1
ATPase phospholipid transporting 8B1
chr12_-_28794957 1.03 ENSDART00000020667
osbpl7
oxysterol binding protein-like 7
chr1_-_48933 1.01 ENSDART00000171162
ildr1a
immunoglobulin-like domain containing receptor 1a
chr14_-_763744 0.93 ENSDART00000165856
trim35-27
tripartite motif containing 35-27
chr20_-_42378865 0.89 ENSDART00000139912
ENSDART00000015801
dcbld1
discoidin, CUB and LCCL domain containing 1
chr3_+_32832042 0.83 ENSDART00000132679
ENSDART00000035759
cd2bp2
CD2 (cytoplasmic tail) binding protein 2
chr5_+_43470544 0.83 ENSDART00000111587
rhobtb2a
Rho-related BTB domain containing 2a
chr15_-_5901514 0.81 ENSDART00000155252
si:ch73-281n10.2
si:ch73-281n10.2
chr23_+_43668756 0.80 ENSDART00000112598
otud4
OTU deubiquitinase 4
chr3_-_30186296 0.77 ENSDART00000134395
ENSDART00000077057
ENSDART00000017422
tbc1d17
TBC1 domain family, member 17
chr20_+_20731052 0.66 ENSDART00000047662
ppp1r13bb
protein phosphatase 1, regulatory subunit 13Bb
chr5_-_6567464 0.66 ENSDART00000184985
tnks1bp1
tankyrase 1 binding protein 1
chr5_+_58665648 0.65 ENSDART00000167481
zgc:194948
zgc:194948
chr3_-_32831429 0.61 ENSDART00000184932
zgc:153733
zgc:153733
chr14_+_4276394 0.59 ENSDART00000038301
gnpda2
glucosamine-6-phosphate deaminase 2
chr3_-_32831971 0.57 ENSDART00000075270
zgc:153733
zgc:153733
chr16_+_23431189 0.53 ENSDART00000004679
icn
ictacalcin
chr16_+_53526135 0.51 ENSDART00000083558
smpd5
sphingomyelin phosphodiesterase 5
chr7_+_54259657 0.45 ENSDART00000170174
pacsin3
protein kinase C and casein kinase substrate in neurons 3
chr15_+_42560354 0.44 ENSDART00000059484
CLDN8 (1 of many)
zgc:110333
chr14_-_4044545 0.43 ENSDART00000169527
snx25
sorting nexin 25
chr19_-_32500373 0.42 ENSDART00000052104
fuca1.1
alpha-L-fucosidase 1, tandem duplicate 1
chr25_+_15994100 0.36 ENSDART00000144723
ppfibp2b
PTPRF interacting protein, binding protein 2b (liprin beta 2)
chr6_+_23057311 0.36 ENSDART00000026448
evpla
envoplakin a
chr1_+_49352900 0.33 ENSDART00000008468
msx1b
muscle segment homeobox 1b
chr5_+_4006837 0.30 ENSDART00000138862
pigw
phosphatidylinositol glycan anchor biosynthesis, class W
chr16_-_10837245 0.25 ENSDART00000036891
rabac1
Rab acceptor 1 (prenylated)
chr3_-_55511569 0.25 ENSDART00000108995
tex2
testis expressed 2
chr16_+_35661771 0.25 ENSDART00000161393
map7d1a
MAP7 domain containing 1a
chr15_+_41919484 0.21 ENSDART00000099821
ENSDART00000146246
nlrp16
NACHT, LRR and PYD domains-containing protein 16
chr4_+_76722754 0.19 ENSDART00000153867
ms4a17a.3
membrane-spanning 4-domains, subfamily A, member 17A.3
chr16_+_35661331 0.19 ENSDART00000161725
map7d1a
MAP7 domain containing 1a
chr19_+_30885258 0.18 ENSDART00000143394
yars
tyrosyl-tRNA synthetase
chr25_+_7435291 0.13 ENSDART00000172567
ENSDART00000163017
prc1a
protein regulator of cytokinesis 1a
chr2_+_5521671 0.13 ENSDART00000099647
ENSDART00000138443
crfb16
cytokine receptor family member B16
chr16_-_9675982 0.12 ENSDART00000113724
mal2
mal, T cell differentiation protein 2 (gene/pseudogene)
chr22_+_25672155 0.12 ENSDART00000087769
si:ch211-250e5.2
si:ch211-250e5.2
chr23_-_22650668 0.12 ENSDART00000132733
ca6
carbonic anhydrase VI
chr15_-_12360409 0.12 ENSDART00000164596
tmprss13a
transmembrane protease, serine 13a
chr23_-_22650992 0.11 ENSDART00000079007
ca6
carbonic anhydrase VI
chr2_+_7557912 0.10 ENSDART00000160053
ripk2
receptor-interacting serine-threonine kinase 2
chr8_+_3405612 0.08 ENSDART00000163437
zgc:112433
zgc:112433
chr8_-_36399884 0.06 ENSDART00000108538
si:zfos-2070c2.3
si:zfos-2070c2.3
chr5_-_57686487 0.05 ENSDART00000074264
crfb12
cytokine receptor family member B12
chr2_-_42864472 0.05 ENSDART00000134139
adcy8
adenylate cyclase 8 (brain)
chr11_-_45140227 0.05 ENSDART00000184062
cant1b
calcium activated nucleotidase 1b
chr3_+_45756605 0.04 ENSDART00000189772
gper1
G protein-coupled estrogen receptor 1
chr15_+_41901710 0.04 ENSDART00000159874
si:ch211-191a16.5
si:ch211-191a16.5
chr21_+_11244068 0.04 ENSDART00000163432
arid6
AT-rich interaction domain 6
chr22_-_14361022 0.03 ENSDART00000140224
si:dkeyp-122a9.2
si:dkeyp-122a9.2
chr15_+_41901970 0.03 ENSDART00000152724
si:ch211-191a16.5
si:ch211-191a16.5
chr11_+_8152872 0.03 ENSDART00000091638
ENSDART00000138057
ENSDART00000166379
samd13
sterile alpha motif domain containing 13
chr4_+_4232562 0.03 ENSDART00000177529
smkr1
small lysine rich protein 1
chr4_-_26413391 0.03 ENSDART00000145955
b4galnt3a
beta-1,4-N-acetyl-galactosaminyl transferase 3a
chr5_-_37900350 0.02 ENSDART00000084839
ENSDART00000084841
ENSDART00000133437
tmprss13b
transmembrane protease, serine 13b
chr6_+_30668098 0.01 ENSDART00000112294
ttc22
tetratricopeptide repeat domain 22
chr12_+_30360579 0.01 ENSDART00000152900
si:ch211-225b10.3
si:ch211-225b10.3

Network of associatons between targets according to the STRING database.

First level regulatory network of grhl1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 2.3 GO:0019532 oxalate transport(GO:0019532)
0.4 1.8 GO:0010693 regulation of alkaline phosphatase activity(GO:0010692) negative regulation of alkaline phosphatase activity(GO:0010693)
0.2 0.8 GO:2000660 regulation of interleukin-1-mediated signaling pathway(GO:2000659) negative regulation of interleukin-1-mediated signaling pathway(GO:2000660)
0.2 0.6 GO:0006043 glucosamine metabolic process(GO:0006041) glucosamine catabolic process(GO:0006043)
0.2 1.4 GO:0051315 attachment of mitotic spindle microtubules to kinetochore(GO:0051315)
0.1 1.2 GO:0001881 receptor recycling(GO:0001881)
0.1 0.4 GO:0006004 fucose metabolic process(GO:0006004)
0.1 1.2 GO:0042574 retinal metabolic process(GO:0042574)
0.1 0.5 GO:0006685 sphingomyelin catabolic process(GO:0006685)
0.0 0.5 GO:0014028 notochord formation(GO:0014028)
0.0 1.2 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 1.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.1 GO:0045056 transcytosis(GO:0045056)
0.0 0.8 GO:0043652 engulfment of apoptotic cell(GO:0043652)
0.0 1.2 GO:0046890 regulation of lipid biosynthetic process(GO:0046890)
0.0 0.4 GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway(GO:0030512) negative regulation of cellular response to transforming growth factor beta stimulus(GO:1903845)
0.0 0.0 GO:1903430 negative regulation of cell maturation(GO:1903430)
0.0 0.1 GO:0051256 mitotic spindle elongation(GO:0000022) spindle elongation(GO:0051231) mitotic spindle midzone assembly(GO:0051256)
0.0 1.2 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 1.2 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.3 GO:0006506 GPI anchor biosynthetic process(GO:0006506)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.0 GO:0097038 perinuclear endoplasmic reticulum(GO:0097038)
0.0 0.8 GO:0005682 U5 snRNP(GO:0005682)
0.0 1.6 GO:0072686 mitotic spindle(GO:0072686)
0.0 2.2 GO:0005802 trans-Golgi network(GO:0005802)
0.0 1.5 GO:0048475 membrane coat(GO:0030117) coated membrane(GO:0048475)
0.0 0.5 GO:0031970 mitochondrial intermembrane space(GO:0005758) organelle envelope lumen(GO:0031970)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.1 0.4 GO:0015928 alpha-L-fucosidase activity(GO:0004560) fucosidase activity(GO:0015928)
0.1 2.3 GO:0019531 oxalate transmembrane transporter activity(GO:0019531)
0.1 1.2 GO:0052650 NADP-retinol dehydrogenase activity(GO:0052650)
0.1 0.4 GO:0019215 intermediate filament binding(GO:0019215)
0.0 0.8 GO:0061578 Lys63-specific deubiquitinase activity(GO:0061578)
0.0 1.0 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.7 GO:0002039 p53 binding(GO:0002039)
0.0 0.8 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.0 0.5 GO:0004767 sphingomyelin phosphodiesterase activity(GO:0004767)
0.0 1.8 GO:0030215 semaphorin receptor binding(GO:0030215)
0.0 1.2 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.5 GO:0048306 calcium-dependent protein binding(GO:0048306)
0.0 0.1 GO:0004706 JUN kinase kinase kinase activity(GO:0004706)
0.0 1.4 GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.4 PID CMYB PATHWAY C-MYB transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 REACTOME DEADENYLATION OF MRNA Genes involved in Deadenylation of mRNA
0.0 1.1 REACTOME ION TRANSPORT BY P TYPE ATPASES Genes involved in Ion transport by P-type ATPases
0.0 0.2 REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE Genes involved in Reversible Hydration of Carbon Dioxide
0.0 1.4 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.0 0.3 REACTOME SYNTHESIS OF GLYCOSYLPHOSPHATIDYLINOSITOL GPI Genes involved in Synthesis of glycosylphosphatidylinositol (GPI)