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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxb13a

Z-value: 0.30

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Transcription factors associated with hoxb13a

Gene Symbol Gene ID Gene Info
hoxb13a
ENSDARG00000056015 homeobox B13a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb13adr11_v1_chr3_+_23654233_23654233-0.522.8e-02Click!

Activity profile of hoxb13a motif

Sorted Z-values of hoxb13a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_+_21295132 0.49 ENSDART00000103845
eno4
enolase family member 4
chr5_-_61970674 0.44 ENSDART00000143161
znf541
zinc finger protein 541
chr22_+_18187857 0.41 ENSDART00000166300
mef2b
myocyte enhancer factor 2b
chr7_-_33130552 0.39 ENSDART00000127006
mns1
meiosis-specific nuclear structural 1
chr18_+_1154189 0.36 ENSDART00000135090
si:ch1073-75f15.2
si:ch1073-75f15.2
chr22_+_18188045 0.30 ENSDART00000140106
mef2b
myocyte enhancer factor 2b
chr7_-_30367650 0.29 ENSDART00000075519
aldh1a2
aldehyde dehydrogenase 1 family, member A2
chr20_+_29743904 0.28 ENSDART00000146366
ENSDART00000153154
kidins220b
kinase D-interacting substrate 220b
chr1_-_58562129 0.28 ENSDART00000159070
slc27a1b
solute carrier family 27 (fatty acid transporter), member 1b
chr25_+_28823952 0.28 ENSDART00000067072
nfybb
nuclear transcription factor Y, beta b
chr19_-_5380770 0.27 ENSDART00000000221
krt91
keratin 91
chr13_+_17694845 0.21 ENSDART00000079778
ifit8
interferon-induced protein with tetratricopeptide repeats 8
chr1_-_58561963 0.20 ENSDART00000165040
slc27a1b
solute carrier family 27 (fatty acid transporter), member 1b
chr24_+_37903448 0.19 ENSDART00000155476
ccdc78
coiled-coil domain containing 78
chr13_+_22675802 0.19 ENSDART00000145538
ENSDART00000143312
zgc:193505
zgc:193505
chr14_-_24761132 0.17 ENSDART00000146299
slit3
slit homolog 3 (Drosophila)
chr18_+_44649804 0.17 ENSDART00000059063
ehd2b
EH-domain containing 2b
chr17_-_15382704 0.16 ENSDART00000005313
zgc:85722
zgc:85722
chr15_-_28596507 0.16 ENSDART00000156800
si:ch211-225b7.5
si:ch211-225b7.5
chr11_-_29623380 0.16 ENSDART00000162587
ENSDART00000193935
ENSDART00000191646
chd5
chromodomain helicase DNA binding protein 5
chr22_+_15624371 0.15 ENSDART00000124868
lpl
lipoprotein lipase
chr12_-_7253270 0.14 ENSDART00000035762
ube2d1b
ubiquitin-conjugating enzyme E2D 1b
chr7_+_39401388 0.14 ENSDART00000144750
tnni2b.1
troponin I type 2b (skeletal, fast), tandem duplicate 1
chr7_+_33130639 0.14 ENSDART00000142450
ENSDART00000173967
ENSDART00000173832
zgc:153219
si:ch211-194p6.7
zgc:153219
si:ch211-194p6.7
chr7_-_20865005 0.14 ENSDART00000190752
fis1
fission, mitochondrial 1
chr6_+_35362225 0.13 ENSDART00000133783
ENSDART00000102483
rgs4
regulator of G protein signaling 4
chr25_-_35599887 0.12 ENSDART00000153827
clpxb
caseinolytic mitochondrial matrix peptidase chaperone subunit b
chr3_+_60044780 0.12 ENSDART00000080437
zgc:113030
zgc:113030
chr1_+_47486104 0.12 ENSDART00000114746
lrrc58a
leucine rich repeat containing 58a
chr16_-_21785261 0.11 ENSDART00000078858
si:ch73-86n18.1
si:ch73-86n18.1
chr5_-_26181863 0.11 ENSDART00000098500
ccdc125
coiled-coil domain containing 125
chr3_+_32443395 0.11 ENSDART00000188447
prr12b
proline rich 12b
chr1_-_44940830 0.10 ENSDART00000097500
ENSDART00000134464
ENSDART00000137216
tmem176
transmembrane protein 176
chr2_-_59145027 0.10 ENSDART00000128320
FO834803.1

chr23_+_30048849 0.10 ENSDART00000126027
uts2a
urotensin 2, alpha
chr7_-_40082053 0.09 ENSDART00000083719
ENSDART00000173687
shrprbck1r
sharpin and rbck1 related
chr14_+_23184517 0.09 ENSDART00000181410
enox2
ecto-NOX disulfide-thiol exchanger 2
chr24_-_23675446 0.09 ENSDART00000066644
hnf4g
hepatocyte nuclear factor 4, gamma
chr18_+_39327010 0.08 ENSDART00000012164
tmod2
tropomodulin 2
chr20_-_48485354 0.08 ENSDART00000124040
ENSDART00000148437
insm1a
insulinoma-associated 1a
chr13_-_26799244 0.08 ENSDART00000036419
vrk2
vaccinia related kinase 2
chr9_-_14683574 0.08 ENSDART00000144022
pard3bb
par-3 family cell polarity regulator beta b
chr23_+_35759843 0.07 ENSDART00000047082
gdap1l1
ganglioside induced differentiation associated protein 1-like 1
chr5_+_34622320 0.07 ENSDART00000141338
enc1
ectodermal-neural cortex 1
chr6_-_12644563 0.07 ENSDART00000153797
dock9b
dedicator of cytokinesis 9b
chr20_-_25709247 0.07 ENSDART00000146711
si:dkeyp-117h8.2
si:dkeyp-117h8.2
chr10_-_7785930 0.07 ENSDART00000043961
ENSDART00000111058
mpx
myeloid-specific peroxidase
chr24_-_23323526 0.07 ENSDART00000112256
ENSDART00000176903
zfhx4
zinc finger homeobox 4
chr2_+_45548890 0.06 ENSDART00000113994
fndc7a
fibronectin type III domain containing 7a
chr17_+_15788100 0.06 ENSDART00000027667
rragd
ras-related GTP binding D
chr6_-_52348562 0.06 ENSDART00000142565
ENSDART00000145369
ENSDART00000016890
eif6
eukaryotic translation initiation factor 6
chr3_-_50118140 0.06 ENSDART00000131913
hgs
hepatocyte growth factor-regulated tyrosine kinase substrate
chr10_+_39164638 0.05 ENSDART00000188997
CU633908.1

chr13_-_35892243 0.05 ENSDART00000002750
ENSDART00000122810
ENSDART00000162399
tacc3
transforming, acidic coiled-coil containing protein 3
chr25_+_19106574 0.05 ENSDART00000067332
rlbp1b
retinaldehyde binding protein 1b
chr23_-_7799184 0.05 ENSDART00000190946
ENSDART00000165427
myt1b
myelin transcription factor 1b
chr5_-_46980651 0.05 ENSDART00000181022
ENSDART00000168038
edil3a
EGF-like repeats and discoidin I-like domains 3a
chr21_-_37733287 0.05 ENSDART00000157826
mpp1
membrane protein, palmitoylated 1
chr13_-_35892051 0.04 ENSDART00000145884
tacc3
transforming, acidic coiled-coil containing protein 3
chr17_-_23412705 0.04 ENSDART00000126995
si:ch211-149k12.3
si:ch211-149k12.3
chr1_+_44941031 0.04 ENSDART00000141145
si:dkey-9i23.16
si:dkey-9i23.16
chr23_+_31596441 0.04 ENSDART00000053534
tbpl1
TBP-like 1
chr21_-_25741411 0.04 ENSDART00000101211
cldnh
claudin h
chr12_+_41697664 0.04 ENSDART00000162302
bnip3
BCL2 interacting protein 3
chr2_-_31735142 0.04 ENSDART00000130903
ralyl
RALY RNA binding protein like
chr23_-_19682971 0.04 ENSDART00000048891
zgc:193598
zgc:193598
chr12_-_16524727 0.04 ENSDART00000166645
FO704724.1

chr15_+_11381532 0.03 ENSDART00000124172
si:ch73-321d9.2
si:ch73-321d9.2
chr7_-_31781339 0.03 ENSDART00000142666
nap1l4b
nucleosome assembly protein 1-like 4b
chr25_+_4750972 0.03 ENSDART00000168903
si:zfos-2372e4.1
si:zfos-2372e4.1
chr15_-_17406056 0.03 ENSDART00000146735
tubd1
tubulin, delta 1
chr16_-_41717063 0.03 ENSDART00000084610
cep85
centrosomal protein 85
chr11_-_30611814 0.03 ENSDART00000089803
slc8a1a
solute carrier family 8 (sodium/calcium exchanger), member 1a
chr8_+_30709685 0.02 ENSDART00000133989
upb1
ureidopropionase, beta
chr21_-_27273147 0.02 ENSDART00000143239
mark2a
MAP/microtubule affinity-regulating kinase 2a
chr17_-_45150763 0.02 ENSDART00000155043
ENSDART00000156786
ENSDART00000191147
tmed8
transmembrane p24 trafficking protein 8
chr10_-_21953643 0.02 ENSDART00000188921
ENSDART00000193569
FO744833.2

chr2_+_16597011 0.02 ENSDART00000160641
ENSDART00000125413
xrn1
5'-3' exoribonuclease 1
chr22_+_11857356 0.02 ENSDART00000179540
mras
muscle RAS oncogene homolog
chr2_-_4070850 0.02 ENSDART00000159990
yme1l1b
YME1-like 1b
chr15_+_45586471 0.02 ENSDART00000165699
cldn15lb
claudin 15-like b
chr24_+_1042594 0.02 ENSDART00000109117
si:dkey-192l18.9
si:dkey-192l18.9
chr20_-_27733683 0.01 ENSDART00000103317
ENSDART00000138139
zgc:153157
zgc:153157
chr2_-_31661609 0.01 ENSDART00000144383
si:ch211-106h4.9
si:ch211-106h4.9
chr21_-_2173300 0.01 ENSDART00000172276
zgc:163077
zgc:163077
chr25_+_25453221 0.01 ENSDART00000176822
rassf7a
Ras association (RalGDS/AF-6) domain family (N-terminal) member 7a
chr19_-_42557416 0.01 ENSDART00000163217
ENSDART00000128278
ENSDART00000162304
ENSDART00000166556
si:dkey-267n13.1
si:dkey-267n13.1
chr13_-_49802194 0.00 ENSDART00000148722
b3galnt2
beta-1,3-N-acetylgalactosaminyltransferase 2
chr8_-_25120231 0.00 ENSDART00000147308
amigo1
adhesion molecule with Ig-like domain 1
chr17_-_7371564 0.00 ENSDART00000060336
rab32b
RAB32b, member RAS oncogene family
chr17_-_52587598 0.00 ENSDART00000061497
si:ch211-173a9.6
si:ch211-173a9.6
chr5_+_27434601 0.00 ENSDART00000064701
loxl2b
lysyl oxidase-like 2b

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb13a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0031650 heat generation(GO:0031649) regulation of heat generation(GO:0031650) positive regulation of heat generation(GO:0031652) regulation of phospholipid biosynthetic process(GO:0071071) negative regulation of phospholipid biosynthetic process(GO:0071072)
0.1 0.3 GO:0061113 pancreas morphogenesis(GO:0061113)
0.1 0.5 GO:0032889 regulation of vacuole fusion, non-autophagic(GO:0032889)
0.0 0.1 GO:0043653 peroxisome fission(GO:0016559) mitochondrial fragmentation involved in apoptotic process(GO:0043653)
0.0 0.1 GO:1902626 mature ribosome assembly(GO:0042256) assembly of large subunit precursor of preribosome(GO:1902626)
0.0 0.1 GO:0051660 establishment of centrosome localization(GO:0051660)
0.0 0.1 GO:0097039 protein linear polyubiquitination(GO:0097039)
0.0 0.1 GO:0007624 ultradian rhythm(GO:0007624)
0.0 0.1 GO:0003322 pancreatic A cell development(GO:0003322)
0.0 0.1 GO:0060221 retinal rod cell differentiation(GO:0060221)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.0 0.3 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.1 GO:0031231 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.1 GO:0034448 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0 0.1 GO:0042627 chylomicron(GO:0042627)
0.0 0.1 GO:0071797 LUBAC complex(GO:0071797)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.5 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.0 0.1 GO:0034185 apolipoprotein binding(GO:0034185)
0.0 0.3 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0 0.7 GO:0042826 histone deacetylase binding(GO:0042826)
0.0 0.2 GO:0048495 Roundabout binding(GO:0048495)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT Genes involved in Chylomicron-mediated lipid transport