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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxb1a+hoxb1b-2

Z-value: 0.11

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Transcription factors associated with hoxb1a+hoxb1b-2

Gene Symbol Gene ID Gene Info
hoxb1a
ENSDARG00000008174 homeobox B1a
hoxb1b-2
ENSDARG00000112663 homeobox B1b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb1adr11_v1_chr3_+_23768898_23768898-0.068.1e-01Click!

Activity profile of hoxb1a+hoxb1b-2 motif

Sorted Z-values of hoxb1a+hoxb1b-2 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr6_-_53143667 0.30 ENSDART00000079694
gnai2b
guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b
chr19_-_867071 0.27 ENSDART00000122257
eomesa
eomesodermin homolog a
chr2_-_49031303 0.20 ENSDART00000143471
cdc34b
cell division cycle 34 homolog (S. cerevisiae) b
chr17_+_19626479 0.20 ENSDART00000044993
ENSDART00000131863
rgs7a
regulator of G protein signaling 7a
chr4_-_10826575 0.19 ENSDART00000164771
ENSDART00000067256
ppfibp1a
PTPRF interacting protein, binding protein 1a (liprin beta 1)
chr6_-_4214297 0.17 ENSDART00000191433
trak2
trafficking protein, kinesin binding 2
chr3_-_6417328 0.17 ENSDART00000160979
jpt1b
Jupiter microtubule associated homolog 1b
chr3_+_40409100 0.15 ENSDART00000103486
tnrc18
trinucleotide repeat containing 18
chr6_+_4255319 0.15 ENSDART00000170351
nbeal1
neurobeachin-like 1
chr18_-_40753583 0.15 ENSDART00000026767
akt2
v-akt murine thymoma viral oncogene homolog 2
chr17_+_28102487 0.14 ENSDART00000131638
ENSDART00000076265
zgc:91908
zgc:91908
chr22_+_10676981 0.14 ENSDART00000138016
hyal2b
hyaluronoglucosaminidase 2b
chr3_-_55650771 0.14 ENSDART00000162413
axin2
axin 2 (conductin, axil)
chr13_-_22961605 0.13 ENSDART00000143112
ENSDART00000057641
tspan15
tetraspanin 15
chr3_-_1283247 0.13 ENSDART00000149814
tcf20
transcription factor 20
chr10_+_37182626 0.12 ENSDART00000137636
ksr1a
kinase suppressor of ras 1a
chr9_+_21795917 0.12 ENSDART00000169069
rev1
REV1, polymerase (DNA directed)
chr2_+_25658112 0.12 ENSDART00000051234
tnika
TRAF2 and NCK interacting kinase a
chr16_+_46401756 0.12 ENSDART00000147370
ENSDART00000144000
rpz2
rapunzel 2
chr15_-_33304133 0.11 ENSDART00000186092
nbeab
neurobeachin b
chr2_+_25657958 0.11 ENSDART00000161407
tnika
TRAF2 and NCK interacting kinase a
chr8_-_49207319 0.10 ENSDART00000022870
fam110a
family with sequence similarity 110, member A
chr15_-_25094026 0.10 ENSDART00000129154
exo5
exonuclease 5
chr4_+_26496489 0.10 ENSDART00000160652
iqsec3a
IQ motif and Sec7 domain 3a
chr1_-_681116 0.10 ENSDART00000165894
adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
chr3_-_55650417 0.10 ENSDART00000171441
axin2
axin 2 (conductin, axil)
chr23_+_27782071 0.10 ENSDART00000131379
kmt2d
lysine (K)-specific methyltransferase 2D
chr15_-_25093680 0.09 ENSDART00000062695
exo5
exonuclease 5
chr5_+_31959954 0.09 ENSDART00000142826
myo1hb
myosin IHb
chr25_-_29072162 0.09 ENSDART00000169269
arid3b
AT rich interactive domain 3B (BRIGHT-like)
chr13_+_50778187 0.08 ENSDART00000159597
dntt
deoxynucleotidyltransferase, terminal
chr24_+_39518774 0.08 ENSDART00000132939
dcun1d3
defective in cullin neddylation 1 domain containing 3
chr14_-_24101897 0.08 ENSDART00000143695
cpeb4a
cytoplasmic polyadenylation element binding protein 4a
chr16_-_20932896 0.08 ENSDART00000180646
tax1bp1b
Tax1 (human T-cell leukemia virus type I) binding protein 1b
chr2_+_23731194 0.08 ENSDART00000155747
slc22a13a
solute carrier family 22 member 13a
chr5_-_16791223 0.08 ENSDART00000192744
atad1a
ATPase family, AAA domain containing 1a
chr21_-_25395223 0.07 ENSDART00000016219
ppme1
protein phosphatase methylesterase 1
chr11_-_27702778 0.07 ENSDART00000045942
ENSDART00000125352
phf2
PHD finger protein 2
chr4_-_13255700 0.07 ENSDART00000162277
ENSDART00000026593
grip1
glutamate receptor interacting protein 1
chr10_+_32646402 0.07 ENSDART00000137244
zbtb21
zinc finger and BTB domain containing 21
chr11_-_40457325 0.06 ENSDART00000128442
tnfrsf1b
tumor necrosis factor receptor superfamily, member 1B
chr14_-_7888748 0.06 ENSDART00000166293
ppp3cb
protein phosphatase 3, catalytic subunit, beta isozyme
chr5_+_8964926 0.06 ENSDART00000091397
ENSDART00000164535
tnksb
tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase b
chr9_+_35017702 0.06 ENSDART00000193640
gabpa
GA binding protein transcription factor, alpha subunit
chr3_-_21118969 0.05 ENSDART00000129016
maza
MYC-associated zinc finger protein a (purine-binding transcription factor)
chr8_-_38201415 0.05 ENSDART00000155189
pdlim2
PDZ and LIM domain 2 (mystique)
chr3_-_21062706 0.05 ENSDART00000155605
ENSDART00000153686
ENSDART00000157168
ENSDART00000156614
ENSDART00000155743
ENSDART00000156275
fam57ba
family with sequence similarity 57, member Ba
chr7_+_21787507 0.05 ENSDART00000100936
tmem88b
transmembrane protein 88 b
chr19_+_13994563 0.05 ENSDART00000164696
tmem222b
transmembrane protein 222b
chr5_+_36896933 0.05 ENSDART00000151984
srsf7a
serine/arginine-rich splicing factor 7a
chr12_+_22580579 0.05 ENSDART00000171725
ENSDART00000192290
capgb
capping protein (actin filament), gelsolin-like b
chr24_+_32472155 0.05 ENSDART00000098859
neurod6a
neuronal differentiation 6a
chr1_+_26626824 0.04 ENSDART00000158193
coro2a
coronin, actin binding protein, 2A
chr8_-_5220125 0.04 ENSDART00000035676
bnip3la
BCL2 interacting protein 3 like a
chr18_-_18875308 0.04 ENSDART00000127182
arl2bp
ADP-ribosylation factor-like 2 binding protein
chr5_-_37881345 0.04 ENSDART00000084819
arhgap35b
Rho GTPase activating protein 35b
chr24_+_27548474 0.04 ENSDART00000105774
ENSDART00000123368
ek1
eph-like kinase 1
chr5_+_6617401 0.04 ENSDART00000060532
zgc:110796
zgc:110796
chr15_-_46673161 0.04 ENSDART00000125211
CABZ01044053.1

chr7_-_33350082 0.03 ENSDART00000008785
anp32a
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
chr7_+_36898850 0.03 ENSDART00000113342
tox3
TOX high mobility group box family member 3
chr10_-_2527342 0.03 ENSDART00000184168
CU856539.1

chr2_+_10821579 0.03 ENSDART00000179694
glmna
glomulin, FKBP associated protein a
chr4_+_21129752 0.03 ENSDART00000169764
syt1a
synaptotagmin Ia
chr5_-_52277643 0.03 ENSDART00000010757
rgmb
repulsive guidance molecule family member b
chr5_+_35398745 0.02 ENSDART00000098010
ptger4b
prostaglandin E receptor 4 (subtype EP4) b
chr18_-_18874921 0.02 ENSDART00000193332
arl2bp
ADP-ribosylation factor-like 2 binding protein
chr17_-_20897407 0.02 ENSDART00000149481
ank3b
ankyrin 3b
chr11_+_30817943 0.02 ENSDART00000150130
ENSDART00000159997
cacna1ab
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b
chr3_+_29714775 0.02 ENSDART00000041388
cacng2a
calcium channel, voltage-dependent, gamma subunit 2a
chr7_-_37547889 0.02 ENSDART00000193359
cylda
cylindromatosis (turban tumor syndrome), a
chr6_+_19383267 0.02 ENSDART00000166549
mchr1a
melanin-concentrating hormone receptor 1a
chr17_-_28101880 0.02 ENSDART00000149458
ENSDART00000149226
ENSDART00000085758
kdm1a
lysine (K)-specific demethylase 1a
chr2_+_10821127 0.02 ENSDART00000145770
ENSDART00000174629
ENSDART00000081094
glmna
glomulin, FKBP associated protein a
chr17_-_20897250 0.02 ENSDART00000088106
ank3b
ankyrin 3b
chr9_+_20781047 0.02 ENSDART00000139174
fam46c
family with sequence similarity 46, member C
chr18_+_28102620 0.01 ENSDART00000132342
kiaa1549lb
KIAA1549-like b
chr16_+_25196572 0.01 ENSDART00000141956
tyrobp
TYRO protein tyrosine kinase binding protein
chr20_+_1088658 0.01 ENSDART00000162991
BX537249.1

chr7_+_7151832 0.01 ENSDART00000109485
gal3st3
galactose-3-O-sulfotransferase 3
chr9_+_20780813 0.01 ENSDART00000142787
fam46c
family with sequence similarity 46, member C
chr25_+_2668892 0.01 ENSDART00000122929
bbs4
Bardet-Biedl syndrome 4
chr9_-_53537989 0.01 ENSDART00000114022
slitrk5b
SLIT and NTRK-like family, member 5b
chr10_-_25591194 0.01 ENSDART00000131640
tiam1a
T cell lymphoma invasion and metastasis 1a
chr8_-_39739056 0.01 ENSDART00000147992
si:ch211-170d8.5
si:ch211-170d8.5
chr1_+_58370526 0.01 ENSDART00000067775
slc27a1b
solute carrier family 27 (fatty acid transporter), member 1b
chr1_-_10577945 0.01 ENSDART00000179237
ENSDART00000040502
ENSDART00000186876
trpc5a
transient receptor potential cation channel, subfamily C, member 5a
chr9_+_22003942 0.01 ENSDART00000091013
si:dkey-57a22.15
si:dkey-57a22.15
chr2_+_17451656 0.01 ENSDART00000163620
BX640408.1

chr24_+_28528000 0.00 ENSDART00000155924
arhgap29a
Rho GTPase activating protein 29a
chr10_-_31175744 0.00 ENSDART00000191728
pknox2
pbx/knotted 1 homeobox 2
chr8_-_39903803 0.00 ENSDART00000012391
cabp1a
calcium binding protein 1a
chr1_-_49505449 0.00 ENSDART00000187294
ENSDART00000132171
si:dkeyp-80c12.5
si:dkeyp-80c12.5
chr8_+_6954984 0.00 ENSDART00000145610
si:ch211-255g12.6
si:ch211-255g12.6
chr8_+_6410933 0.00 ENSDART00000168789
lrrtm4l2
leucine rich repeat transmembrane neuronal 4 like 2
chr2_+_22765492 0.00 ENSDART00000133222
espnlb
espin like b
chr1_-_9227804 0.00 ENSDART00000190360
gng13a
guanine nucleotide binding protein (G protein), gamma 13a
chr10_-_27049170 0.00 ENSDART00000143451
cnih2
cornichon family AMPA receptor auxiliary protein 2
chr2_+_55984788 0.00 ENSDART00000183599
nmrk2
nicotinamide riboside kinase 2
chr16_-_16761164 0.00 ENSDART00000135872
si:dkey-27n14.1
si:dkey-27n14.1
chr24_-_21713883 0.00 ENSDART00000081357
flt3
fms-related tyrosine kinase 3
chr10_-_44305180 0.00 ENSDART00000187552
CDK2AP1
cyclin dependent kinase 2 associated protein 1

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb1a+hoxb1b-2

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0060571 invagination involved in gastrulation with mouth forming second(GO:0055109) morphogenesis of an epithelial fold(GO:0060571)
0.0 0.2 GO:0046324 regulation of glucose import(GO:0046324)
0.0 0.1 GO:0070987 error-free translesion synthesis(GO:0070987)
0.0 0.2 GO:0098957 anterograde axonal transport of mitochondrion(GO:0098957)
0.0 0.3 GO:0035588 adenosine receptor signaling pathway(GO:0001973) purinergic receptor signaling pathway(GO:0035587) G-protein coupled purinergic receptor signaling pathway(GO:0035588)
0.0 0.1 GO:0061188 regulation of chromatin silencing at rDNA(GO:0061187) negative regulation of chromatin silencing at rDNA(GO:0061188)
0.0 0.2 GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000054)
0.0 0.1 GO:0032206 positive regulation of telomere maintenance(GO:0032206) regulation of telomere capping(GO:1904353) positive regulation of telomere capping(GO:1904355)
0.0 0.1 GO:0002931 response to ischemia(GO:0002931)
0.0 0.1 GO:0030214 hyaluronan catabolic process(GO:0030214)
0.0 0.1 GO:0003428 growth plate cartilage morphogenesis(GO:0003422) chondrocyte intercalation involved in growth plate cartilage morphogenesis(GO:0003428)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0005955 calcineurin complex(GO:0005955)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity(GO:0045145)
0.0 0.1 GO:0033906 hyaluronoglucuronidase activity(GO:0033906)
0.0 0.1 GO:0055105 ubiquitin-protein transferase inhibitor activity(GO:0055105)
0.0 0.1 GO:0033192 calcium-dependent protein serine/threonine phosphatase activity(GO:0004723) calmodulin-dependent protein phosphatase activity(GO:0033192)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 PID BETA CATENIN DEG PATHWAY Degradation of beta catenin

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK Genes involved in Negative regulation of the PI3K/AKT network