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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxb4a

Z-value: 0.29

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Transcription factors associated with hoxb4a

Gene Symbol Gene ID Gene Info
hoxb4a
ENSDARG00000013533 homeobox B4a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb4adr11_v1_chr3_+_23710839_23710839-0.106.9e-01Click!

Activity profile of hoxb4a motif

Sorted Z-values of hoxb4a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_+_21406769 0.74 ENSDART00000135766
si:dkey-163f12.6
si:dkey-163f12.6
chr19_+_816208 0.73 ENSDART00000093304
nrm
nurim
chr10_+_36026576 0.68 ENSDART00000193786
hmgb1a
high mobility group box 1a
chr21_+_22423286 0.62 ENSDART00000133190
capslb
calcyphosine-like b
chr17_+_23937262 0.61 ENSDART00000113276
si:ch211-189k9.2
si:ch211-189k9.2
chr25_-_4482449 0.60 ENSDART00000056278
ENSDART00000149425
slc25a22a
solute carrier family 25 member 22a
chr5_+_20112032 0.54 ENSDART00000130554
isg15
ISG15 ubiquitin-like modifier
chr6_+_29791164 0.50 ENSDART00000017424
ptmaa
prothymosin, alpha a
chr12_+_28854410 0.42 ENSDART00000152991
nfe2l1b
nuclear factor, erythroid 2-like 1b
chr20_+_51478939 0.37 ENSDART00000149758
tlr5a
toll-like receptor 5a
chr5_+_32924669 0.34 ENSDART00000085219
lmo4a
LIM domain only 4a
chr8_-_912821 0.33 ENSDART00000082296
ptger4a
prostaglandin E receptor 4 (subtype EP4) a
chr1_-_46981134 0.32 ENSDART00000130607
pknox1.2
pbx/knotted 1 homeobox 1.2
chr17_-_19626357 0.32 ENSDART00000011432
reep3a
receptor accessory protein 3a
chr21_-_24632778 0.29 ENSDART00000132533
ENSDART00000058370
arhgap32b
Rho GTPase activating protein 32b
chr25_-_13842618 0.28 ENSDART00000160258
mapk8ip1a
mitogen-activated protein kinase 8 interacting protein 1a
chr20_+_51479263 0.25 ENSDART00000148798
tlr5a
toll-like receptor 5a
chr10_-_26744131 0.23 ENSDART00000020096
ENSDART00000162710
ENSDART00000179853
fgf13b
fibroblast growth factor 13b
chr21_-_27338639 0.22 ENSDART00000130632
hif1al2
hypoxia-inducible factor 1, alpha subunit, like 2
chr9_+_45605410 0.19 ENSDART00000136444
ENSDART00000007189
ENSDART00000158713
ENSDART00000182671
traf3ip1
TNF receptor-associated factor 3 interacting protein 1
chr12_+_28854963 0.19 ENSDART00000153227
nfe2l1b
nuclear factor, erythroid 2-like 1b
chr3_+_27027781 0.17 ENSDART00000065495
emp2
epithelial membrane protein 2
chr23_+_3721042 0.17 ENSDART00000143323
smim29
small integral membrane protein 29
chr3_-_51109286 0.17 ENSDART00000172010
si:ch211-148f13.1
si:ch211-148f13.1
chr4_+_12340655 0.15 ENSDART00000168487
pimr214
Pim proto-oncogene, serine/threonine kinase, related 214
chr9_-_15789526 0.15 ENSDART00000141318
si:dkey-103d23.3
si:dkey-103d23.3
chr6_-_28345002 0.15 ENSDART00000158955
si:busm1-105l16.2
si:busm1-105l16.2
chr20_-_32188897 0.14 ENSDART00000133887
si:ch211-51a19.5
si:ch211-51a19.5
chr7_-_20453661 0.14 ENSDART00000174001
ntn5
netrin 5
chr15_-_15968883 0.14 ENSDART00000166583
ENSDART00000154042
synrg
synergin, gamma
chr5_-_7834582 0.12 ENSDART00000162626
ENSDART00000157661
pdlim5a
PDZ and LIM domain 5a
chr4_+_7391110 0.12 ENSDART00000160708
ENSDART00000187823
tnni4a
troponin I4a
chr20_-_29420713 0.12 ENSDART00000147464
ryr3
ryanodine receptor 3
chr20_-_26491567 0.11 ENSDART00000147154
mthfd1l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
chr7_-_52842007 0.11 ENSDART00000182710
map1aa
microtubule-associated protein 1Aa
chr13_+_36622100 0.10 ENSDART00000133198
si:ch211-67f24.7
si:ch211-67f24.7
chr17_-_114121 0.09 ENSDART00000172408
ENSDART00000157784
arhgap11a
Rho GTPase activating protein 11A
chr14_+_46274611 0.09 ENSDART00000134363
cabp2b
calcium binding protein 2b
chr17_-_23241393 0.08 ENSDART00000190697
AL935174.4

chr17_+_39242437 0.08 ENSDART00000156138
ENSDART00000128863
zgc:174356
zgc:174356
chr6_-_29105727 0.07 ENSDART00000184355
fam69ab
family with sequence similarity 69, member Ab
chr15_+_17251191 0.07 ENSDART00000156587
si:ch73-223p23.2
si:ch73-223p23.2
chr18_-_14836862 0.07 ENSDART00000124843
mtss1la
metastasis suppressor 1-like a
chr18_-_14836600 0.07 ENSDART00000045232
mtss1la
metastasis suppressor 1-like a
chr17_+_27434626 0.07 ENSDART00000052446
vgll2b
vestigial-like family member 2b
chr2_-_722156 0.06 ENSDART00000045770
ENSDART00000169498
foxq1a
forkhead box Q1a
chr3_-_52644737 0.06 ENSDART00000126180
si:dkey-210j14.3
si:dkey-210j14.3
chr7_+_35268880 0.04 ENSDART00000182231
dpep2
dipeptidase 2
chr1_-_47431453 0.04 ENSDART00000101104
gja5b
gap junction protein, alpha 5b
chr1_+_11881559 0.04 ENSDART00000166981
snx8b
sorting nexin 8b
chr11_+_40530748 0.04 ENSDART00000173239
mmel1
membrane metallo-endopeptidase-like 1
chr7_+_27317174 0.03 ENSDART00000193058
sox6
SRY (sex determining region Y)-box 6
chr13_+_30912117 0.03 ENSDART00000133138
drgx
dorsal root ganglia homeobox
chr9_+_22351443 0.03 ENSDART00000080054
crygs3
crystallin, gamma S3
chr12_+_9703172 0.03 ENSDART00000091489
ppp1r9bb
protein phosphatase 1, regulatory subunit 9Bb
chr13_+_30912385 0.02 ENSDART00000182642
drgx
dorsal root ganglia homeobox
chr10_-_20445549 0.02 ENSDART00000064613
loxl2a
lysyl oxidase-like 2a
chr24_-_26460853 0.02 ENSDART00000078628
slc7a14b
solute carrier family 7, member 14b
chr23_-_3721444 0.01 ENSDART00000141682
nudt3a
nudix (nucleoside diphosphate linked moiety X)-type motif 3a
chr2_+_27010439 0.01 ENSDART00000030547
cdh7a
cadherin 7a

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb4a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0034146 toll-like receptor 5 signaling pathway(GO:0034146)
0.1 0.3 GO:0071380 response to prostaglandin E(GO:0034695) cellular response to prostaglandin E stimulus(GO:0071380)
0.1 0.6 GO:0043490 acidic amino acid transport(GO:0015800) aspartate transport(GO:0015810) L-glutamate transport(GO:0015813) malate-aspartate shuttle(GO:0043490)
0.1 0.2 GO:0003071 renal system process involved in regulation of blood volume(GO:0001977) renal system process involved in regulation of systemic arterial blood pressure(GO:0003071) regulation of glomerular filtration(GO:0003093)
0.0 0.7 GO:0009409 response to cold(GO:0009409)
0.0 0.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.2 GO:0031113 regulation of microtubule polymerization(GO:0031113) cerebrospinal fluid circulation(GO:0090660)
0.0 0.2 GO:1905150 regulation of voltage-gated sodium channel activity(GO:1905150)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0001650 fibrillar center(GO:0001650)
0.0 0.3 GO:0071782 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.0 0.1 GO:0005790 smooth endoplasmic reticulum(GO:0005790)
0.0 0.7 GO:0005637 nuclear inner membrane(GO:0005637)
0.0 0.2 GO:0030992 intraciliary transport particle B(GO:0030992)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0016316 phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity(GO:0016316)
0.1 0.6 GO:0015183 L-aspartate transmembrane transporter activity(GO:0015183)
0.0 0.7 GO:0008301 DNA binding, bending(GO:0008301)
0.0 0.5 GO:0031386 protein tag(GO:0031386)
0.0 0.3 GO:0004957 prostaglandin E receptor activity(GO:0004957)
0.0 0.1 GO:0048763 ryanodine-sensitive calcium-release channel activity(GO:0005219) calcium-induced calcium release activity(GO:0048763)
0.0 0.1 GO:0004329 formate-tetrahydrofolate ligase activity(GO:0004329)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.5 REACTOME INTERFERON ALPHA BETA SIGNALING Genes involved in Interferon alpha/beta signaling