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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxb7a

Z-value: 0.26

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Transcription factors associated with hoxb7a

Gene Symbol Gene ID Gene Info
hoxb7a
ENSDARG00000056030 homeobox B7a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxb7adr11_v1_chr3_+_23691847_236918470.302.2e-01Click!

Activity profile of hoxb7a motif

Sorted Z-values of hoxb7a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr17_+_16090436 0.50 ENSDART00000136059
ENSDART00000138734
znf395a
zinc finger protein 395a
chr10_-_21362071 0.49 ENSDART00000125167
avd
avidin
chr10_-_21362320 0.46 ENSDART00000189789
avd
avidin
chr9_+_54039006 0.43 ENSDART00000112441
tlr7
toll-like receptor 7
chr21_+_34088377 0.38 ENSDART00000170070
mtmr1b
myotubularin related protein 1b
chr21_+_34088110 0.36 ENSDART00000145123
ENSDART00000029599
ENSDART00000147519
mtmr1b
myotubularin related protein 1b
chr7_+_7696665 0.28 ENSDART00000091099
ino80b
INO80 complex subunit B
chr17_+_30369396 0.25 ENSDART00000076611
greb1
growth regulation by estrogen in breast cancer 1
chr9_-_27398369 0.24 ENSDART00000186499
tex30
testis expressed 30
chr18_+_14619544 0.24 ENSDART00000010821
utp4
UTP4, small subunit processome component
chr22_-_19102256 0.23 ENSDART00000171866
ENSDART00000166295
polrmt
polymerase (RNA) mitochondrial (DNA directed)
chr10_+_11261576 0.22 ENSDART00000155333
hsdl2
hydroxysteroid dehydrogenase like 2
chr12_-_4243268 0.22 ENSDART00000131275
zgc:92313
zgc:92313
chr2_+_15048410 0.21 ENSDART00000058484
cnn3b
calponin 3, acidic b
chr6_+_7414215 0.21 ENSDART00000049339
sox21a
SRY (sex determining region Y)-box 21a
chr3_+_26288981 0.20 ENSDART00000163500
rhot1a
ras homolog family member T1a
chr23_-_36446307 0.20 ENSDART00000136623
zgc:174906
zgc:174906
chr9_+_21793565 0.19 ENSDART00000134915
rev1
REV1, polymerase (DNA directed)
chr2_-_54039293 0.19 ENSDART00000166013
abhd8a
abhydrolase domain containing 8a
chr24_-_16980337 0.19 ENSDART00000183812
klhl15
kelch-like family member 15
chr10_+_43039947 0.19 ENSDART00000193434
atg10
ATG10 autophagy related 10 homolog (S. cerevisiae)
chr21_-_34032650 0.17 ENSDART00000138575
ENSDART00000047515
rnf145b
ring finger protein 145b
chr14_+_16287968 0.17 ENSDART00000106593
prpf19
pre-mRNA processing factor 19
chr5_-_23675222 0.16 ENSDART00000135153
TBC1D8B
si:dkey-110k5.6
chr10_-_13343831 0.15 ENSDART00000135941
il11ra
interleukin 11 receptor, alpha
chr3_-_20040636 0.14 ENSDART00000104118
atxn7l3
ataxin 7-like 3
chr24_+_16985181 0.13 ENSDART00000135580
eif2s3
eukaryotic translation initiation factor 2, subunit 3 gamma
chr25_-_3058687 0.13 ENSDART00000149117
ENSDART00000137950
si:ch1073-296i8.2
si:ch1073-296i8.2
chr6_+_21992820 0.12 ENSDART00000147507
thumpd3
THUMP domain containing 3
chr18_-_15551360 0.11 ENSDART00000159915
ENSDART00000172690
ppfibp1b
PTPRF interacting protein, binding protein 1b (liprin beta 1)
chr23_+_28809002 0.11 ENSDART00000134121
ENSDART00000183661
pex14
peroxisomal biogenesis factor 14
chr2_-_7246848 0.11 ENSDART00000146434
zgc:153115
zgc:153115
chr2_+_105748 0.10 ENSDART00000169601
CABZ01098670.1

chr2_-_1486023 0.10 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr6_+_9898683 0.10 ENSDART00000005573
tmem237b
transmembrane protein 237b
chr3_+_62000822 0.10 ENSDART00000106680
rai1
retinoic acid induced 1
chr16_-_42965192 0.09 ENSDART00000113714
mtx1a
metaxin 1a
chr17_+_51682429 0.09 ENSDART00000004379
nol10
nucleolar protein 10
chr23_+_4709607 0.09 ENSDART00000166503
ENSDART00000158752
ENSDART00000163860
ENSDART00000172739
raf1a
raf1a
Raf-1 proto-oncogene, serine/threonine kinase a
Raf-1 proto-oncogene, serine/threonine kinase a
chr18_+_34362608 0.09 ENSDART00000131478
kcnab1a
potassium voltage-gated channel, shaker-related subfamily, beta member 1 a
chr7_+_69019851 0.09 ENSDART00000162891
CABZ01057488.1

chr8_-_50888806 0.08 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr8_+_18011522 0.08 ENSDART00000136756
ssbp3b
single stranded DNA binding protein 3b
chr3_+_27798094 0.08 ENSDART00000075100
ENSDART00000151437
carhsp1
calcium regulated heat stable protein 1
chr5_-_67750907 0.07 ENSDART00000172097
b4galt4
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4
chr7_+_21272833 0.07 ENSDART00000052942
serpinh2
serine (or cysteine) peptidase inhibitor, clade H, member 2
chr13_-_5252559 0.07 ENSDART00000181652
si:dkey-78p8.1
si:dkey-78p8.1
chr9_-_43538328 0.06 ENSDART00000140526
znf385b
zinc finger protein 385B
chr23_-_25779995 0.06 ENSDART00000110670
si:dkey-21c19.3
si:dkey-21c19.3
chr8_+_7801060 0.06 ENSDART00000161618
tfe3a
transcription factor binding to IGHM enhancer 3a
chr3_-_36602379 0.05 ENSDART00000161501
ENSDART00000162396
rrn3
RRN3 homolog, RNA polymerase I transcription factor
chr2_+_50608099 0.04 ENSDART00000185805
ENSDART00000111135
neurod6b
neuronal differentiation 6b
chr17_+_20589553 0.04 ENSDART00000154447
si:ch73-288o11.4
si:ch73-288o11.4
chr21_-_15200556 0.04 ENSDART00000141809
sfswap
splicing factor SWAP
chr15_+_857148 0.04 ENSDART00000156949
si:dkey-7i4.13
si:dkey-7i4.13
chr12_+_48803098 0.04 ENSDART00000074768
ppifb
peptidylprolyl isomerase Fb
chr25_+_13620555 0.04 ENSDART00000163642
si:ch211-172l8.4
si:ch211-172l8.4
chr23_+_39462208 0.03 ENSDART00000136707
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr3_-_31079186 0.03 ENSDART00000145636
ENSDART00000140569
ELOB (1 of many)
elob
elongin B
elongin B
chr17_+_31914877 0.03 ENSDART00000177801
FAM196A (1 of many)
family with sequence similarity 196 member A
chr8_+_25034544 0.03 ENSDART00000123300
ngrn
neugrin, neurite outgrowth associated
chr4_+_70151160 0.03 ENSDART00000111816
si:dkey-3h2.4
si:dkey-3h2.4
chr13_-_10945288 0.02 ENSDART00000114315
ENSDART00000164667
ENSDART00000159482
abcg8
ATP-binding cassette, sub-family G (WHITE), member 8
chr9_+_1139378 0.02 ENSDART00000170033
slc15a1a
solute carrier family 15 (oligopeptide transporter), member 1a
chr1_+_19303241 0.02 ENSDART00000129970
si:dkeyp-118a3.2
si:dkeyp-118a3.2
chr1_-_22851481 0.02 ENSDART00000054386
qdprb1
quinoid dihydropteridine reductase b1
chr3_-_50443607 0.02 ENSDART00000074036
rcvrna
recoverin a
chr3_-_36602069 0.02 ENSDART00000165414
rrn3
RRN3 homolog, RNA polymerase I transcription factor
chr23_+_39461989 0.02 ENSDART00000184761
mical1
microtubule associated monooxygenase, calponin and LIM domain containing 1
chr1_+_22851261 0.02 ENSDART00000193925
gtf2e2
general transcription factor IIE, polypeptide 2, beta
chr19_+_5480327 0.01 ENSDART00000148794
jupb
junction plakoglobin b
chr5_+_71802014 0.01 ENSDART00000124939
ENSDART00000097164
LHX3
LIM homeobox 3
chr22_-_27296889 0.01 ENSDART00000155724
si:dkey-208m12.3
si:dkey-208m12.3
chr17_+_44697604 0.01 ENSDART00000156625
pgfb
placental growth factor b
chr15_-_43284021 0.01 ENSDART00000041677
serpine2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr20_-_46128590 0.01 ENSDART00000123744
taar1b
trace amine associated receptor 1b
chr5_-_16218777 0.01 ENSDART00000141698
kremen1
kringle containing transmembrane protein 1
chr4_-_1801519 0.01 ENSDART00000188604
ENSDART00000135749
nudt4b
nudix (nucleoside diphosphate linked moiety X)-type motif 4b
chr8_-_12867128 0.01 ENSDART00000142201
slc2a6
solute carrier family 2 (facilitated glucose transporter), member 6
chr19_+_2631565 0.01 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr17_-_49438873 0.01 ENSDART00000004424
znf292a
zinc finger protein 292a
chr12_+_31735159 0.01 ENSDART00000185442
RNF157
si:dkey-49c17.3
chr5_+_34623107 0.00 ENSDART00000184126
enc1
ectodermal-neural cortex 1
chr24_-_36680261 0.00 ENSDART00000059507
ccr10
chemokine (C-C motif) receptor 10

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxb7a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0034154 toll-like receptor 7 signaling pathway(GO:0034154)
0.0 0.2 GO:0070987 error-free translesion synthesis(GO:0070987)
0.0 0.2 GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator(GO:0043518)
0.0 0.1 GO:0045903 positive regulation of translational fidelity(GO:0045903)
0.0 0.2 GO:0006390 transcription from mitochondrial promoter(GO:0006390)
0.0 0.2 GO:0097345 mitochondrial outer membrane permeabilization(GO:0097345)
0.0 0.1 GO:1901017 negative regulation of potassium ion transmembrane transporter activity(GO:1901017) negative regulation of potassium ion transmembrane transport(GO:1901380) negative regulation of delayed rectifier potassium channel activity(GO:1902260) negative regulation of voltage-gated potassium channel activity(GO:1903817)
0.0 0.1 GO:0019417 sulfur oxidation(GO:0019417)
0.0 0.7 GO:0046856 phosphatidylinositol dephosphorylation(GO:0046856)
0.0 0.1 GO:2000001 regulation of DNA damage checkpoint(GO:2000001)
0.0 0.1 GO:0022615 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.0 0.3 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1990429 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.2 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.1 GO:0005850 eukaryotic translation initiation factor 2 complex(GO:0005850)
0.0 0.3 GO:0031011 Ino80 complex(GO:0031011) DNA helicase complex(GO:0033202)
0.0 0.2 GO:0031307 integral component of mitochondrial outer membrane(GO:0031307)
0.0 0.1 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0009374 biotin binding(GO:0009374)
0.1 0.7 GO:0052629 phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)
0.1 0.2 GO:0019777 Atg12 transferase activity(GO:0019777)
0.0 0.1 GO:0001042 RNA polymerase I core binding(GO:0001042)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.4 REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR Genes involved in Trafficking and processing of endosomal TLR