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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxc11b

Z-value: 0.47

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Transcription factors associated with hoxc11b

Gene Symbol Gene ID Gene Info
hoxc11b
ENSDARG00000102631 homeobox C11b

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc11bdr11_v1_chr11_+_2180072_2180072-0.753.0e-04Click!

Activity profile of hoxc11b motif

Sorted Z-values of hoxc11b motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr24_-_17029374 0.93 ENSDART00000039267
ptgdsb.1
prostaglandin D2 synthase b, tandem duplicate 1
chr2_-_32738535 0.64 ENSDART00000135293
nrbp2a
nuclear receptor binding protein 2a
chr13_-_4018888 0.62 ENSDART00000058238
tjap1
tight junction associated protein 1 (peripheral)
chr3_-_3366590 0.60 ENSDART00000109428
ENSDART00000175329
si:dkey-46g23.1
si:dkey-46g23.1
chr10_-_10969444 0.51 ENSDART00000138041
exd3
exonuclease 3'-5' domain containing 3
chr2_+_16597011 0.49 ENSDART00000160641
ENSDART00000125413
xrn1
5'-3' exoribonuclease 1
chr14_+_4276394 0.48 ENSDART00000038301
gnpda2
glucosamine-6-phosphate deaminase 2
chr10_-_10969596 0.47 ENSDART00000092011
exd3
exonuclease 3'-5' domain containing 3
chr23_+_2666944 0.46 ENSDART00000192861
CABZ01057928.1

chr6_-_41138854 0.44 ENSDART00000128723
ENSDART00000151055
ENSDART00000132484
slc6a22.1
solute carrier family 6 member 22, tandem duplicate 1
chr20_-_34670236 0.42 ENSDART00000033325
slc25a24
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24
chr20_-_29499363 0.41 ENSDART00000152889
ENSDART00000153252
ENSDART00000170972
ENSDART00000166420
ENSDART00000163079
rrm2
ribonucleotide reductase M2 polypeptide
chr25_+_7532811 0.41 ENSDART00000161593
ptdss2
phosphatidylserine synthase 2
chr21_-_3700334 0.40 ENSDART00000137844
atp8b1
ATPase phospholipid transporting 8B1
chr24_+_21720304 0.40 ENSDART00000147250
ENSDART00000048273
pan3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr16_-_42965192 0.39 ENSDART00000113714
mtx1a
metaxin 1a
chr9_+_21977383 0.38 ENSDART00000135032
si:dkey-57a22.11
si:dkey-57a22.11
chr25_+_28823952 0.37 ENSDART00000067072
nfybb
nuclear transcription factor Y, beta b
chr3_+_39579393 0.37 ENSDART00000055170
cln3
ceroid-lipofuscinosis, neuronal 3
chr17_-_8592824 0.36 ENSDART00000127022
CU462878.1

chr20_-_51831657 0.35 ENSDART00000165076
mia3
melanoma inhibitory activity family, member 3
chr20_-_14462995 0.35 ENSDART00000152418
ENSDART00000044125
grcc10
gene rich cluster, C10 gene
chr5_-_65662996 0.35 ENSDART00000147707
camsap1b
calmodulin regulated spectrin-associated protein 1b
chr11_+_21586335 0.35 ENSDART00000091182
FAM72B
zgc:101564
chr14_+_14841685 0.34 ENSDART00000158291
ENSDART00000162039
slbp
stem-loop binding protein
chr19_-_47571797 0.33 ENSDART00000166180
ENSDART00000168134
rrm2
ribonucleotide reductase M2 polypeptide
chr13_+_36585399 0.33 ENSDART00000030211
gmfb
glia maturation factor, beta
chr15_-_1843831 0.33 ENSDART00000156718
ENSDART00000154175
taf15
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chr8_+_12951155 0.33 ENSDART00000081601
cept1a
choline/ethanolamine phosphotransferase 1a
chr19_-_617246 0.33 ENSDART00000062551
cyp51
cytochrome P450, family 51
chr13_-_25745089 0.32 ENSDART00000189333
ENSDART00000147420
sgpl1
sphingosine-1-phosphate lyase 1
chr6_+_27667359 0.32 ENSDART00000159624
ENSDART00000049177
rab6ba
RAB6B, member RAS oncogene family a
chr20_-_51831816 0.32 ENSDART00000060505
mia3
melanoma inhibitory activity family, member 3
chr19_-_47571456 0.31 ENSDART00000158071
ENSDART00000165841
rrm2
ribonucleotide reductase M2 polypeptide
chr2_-_9971609 0.31 ENSDART00000137924
ENSDART00000048655
ENSDART00000131613
zgc:55943
zgc:55943
chr20_+_27087539 0.30 ENSDART00000062094
tmem251
transmembrane protein 251
chr15_-_16946124 0.30 ENSDART00000154923
hip1
huntingtin interacting protein 1
chr15_+_44093286 0.30 ENSDART00000114352
zgc:112998
zgc:112998
chr24_-_32025637 0.30 ENSDART00000180448
ENSDART00000159034
rsu1
Ras suppressor protein 1
chr14_-_36763302 0.30 ENSDART00000074786
ctso
cathepsin O
chr2_-_45663945 0.30 ENSDART00000075080
prpf38b
pre-mRNA processing factor 38B
chr22_+_1953096 0.29 ENSDART00000166630
ENSDART00000186234
si:dkey-15h8.16
si:dkey-15h8.16
chr12_-_44759246 0.28 ENSDART00000162888
dock1
dedicator of cytokinesis 1
chr3_-_26183699 0.28 ENSDART00000147517
ENSDART00000140731
si:ch211-11k18.4
si:ch211-11k18.4
chr12_-_13337033 0.28 ENSDART00000105903
ENSDART00000139786
lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
chr2_+_31948352 0.27 ENSDART00000192611
ankhb
ANKH inorganic pyrophosphate transport regulator b
chr17_+_14965570 0.27 ENSDART00000066604
gpr137c
G protein-coupled receptor 137c
chr21_+_25236297 0.27 ENSDART00000112783
tmem45b
transmembrane protein 45B
chr11_+_37049105 0.27 ENSDART00000155408
bicd2
bicaudal D homolog 2 (Drosophila)
chr11_+_37049347 0.26 ENSDART00000109235
bicd2
bicaudal D homolog 2 (Drosophila)
chr3_+_35406998 0.25 ENSDART00000102994
rbbp6
retinoblastoma binding protein 6
chr1_+_52481332 0.25 ENSDART00000074231
cldnd1b
claudin domain containing 1b
chr23_+_22785375 0.24 ENSDART00000142085
rerea
arginine-glutamic acid dipeptide (RE) repeats a
chr2_-_32366287 0.24 ENSDART00000144758
ubtfl
upstream binding transcription factor, like
chr16_+_7380463 0.24 ENSDART00000029727
ENSDART00000149086
atg5
ATG5 autophagy related 5 homolog (S. cerevisiae)
chr14_+_32918172 0.24 ENSDART00000182867
lnx2b
ligand of numb-protein X 2b
chr13_-_37465524 0.24 ENSDART00000100324
ENSDART00000147336
ppp2r5eb
protein phosphatase 2, regulatory subunit B', epsilon isoform b
chr16_+_13883872 0.24 ENSDART00000101304
ENSDART00000136005
atg12
ATG12 autophagy related 12 homolog (S. cerevisiae)
chr7_-_60096318 0.23 ENSDART00000189125
BX511067.1

chr10_+_5234327 0.23 ENSDART00000133927
ENSDART00000063120
sptlc1
serine palmitoyltransferase, long chain base subunit 1
chr7_+_9981757 0.23 ENSDART00000113429
ENSDART00000173233
adamts17
ADAM metallopeptidase with thrombospondin type 1 motif, 17
chr15_-_36660789 0.22 ENSDART00000150109
nphs1
nephrosis 1, congenital, Finnish type (nephrin)
chr3_+_52545014 0.22 ENSDART00000018908
slc27a1a
solute carrier family 27 (fatty acid transporter), member 1a
chr3_+_52545400 0.21 ENSDART00000184183
slc27a1a
solute carrier family 27 (fatty acid transporter), member 1a
chr8_+_23381892 0.21 ENSDART00000180950
ENSDART00000063010
ENSDART00000074241
ENSDART00000142783
mapre1a
microtubule-associated protein, RP/EB family, member 1a
chr16_-_21903083 0.21 ENSDART00000165849
setdb1b
SET domain, bifurcated 1b
chr17_+_15788100 0.21 ENSDART00000027667
rragd
ras-related GTP binding D
chr7_-_7692992 0.21 ENSDART00000192619
aadat
aminoadipate aminotransferase
chr7_-_57637779 0.21 ENSDART00000028017
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast)
chr6_-_9282080 0.21 ENSDART00000159506
ccdc14
coiled-coil domain containing 14
chr13_-_26799244 0.21 ENSDART00000036419
vrk2
vaccinia related kinase 2
chr4_+_12292274 0.21 ENSDART00000061070
ENSDART00000150786
mkrn1
makorin, ring finger protein, 1
chr22_-_31517300 0.21 ENSDART00000164799
slc6a6b
solute carrier family 6 (neurotransmitter transporter), member 6b
chr11_+_25112269 0.20 ENSDART00000147546
ndrg3a
ndrg family member 3a
chr12_+_34770531 0.20 ENSDART00000153320
slc38a10
solute carrier family 38, member 10
chr16_+_54829293 0.20 ENSDART00000024729
pabpc1a
poly(A) binding protein, cytoplasmic 1a
chr2_-_44777592 0.20 ENSDART00000113351
ENSDART00000169310
ncapd2
non-SMC condensin I complex, subunit D2
chr15_-_23936276 0.20 ENSDART00000137569
appbp2
amyloid beta precursor protein (cytoplasmic tail) binding protein 2
chr7_-_26076970 0.20 ENSDART00000101120
zgc:92664
zgc:92664
chr25_+_14694876 0.20 ENSDART00000050478
ENSDART00000188093
mpped2
metallophosphoesterase domain containing 2b
chr11_-_12744082 0.19 ENSDART00000081319
zrsr2
zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2
chr11_-_25257045 0.19 ENSDART00000130477
snai1a
snail family zinc finger 1a
chr6_+_4528631 0.19 ENSDART00000122042
RNF219
ring finger protein 219
chr7_-_30280934 0.19 ENSDART00000126741
serf2
small EDRK-rich factor 2
chr16_+_38940758 0.19 ENSDART00000102482
ENSDART00000136215
eny2
enhancer of yellow 2 homolog (Drosophila)
chr12_-_11560794 0.19 ENSDART00000149098
ENSDART00000169975
plekha1b
pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b
chr23_-_36003282 0.19 ENSDART00000103150
calcoco1a
calcium binding and coiled-coil domain 1a
chr14_-_25949951 0.19 ENSDART00000141304
sparc
secreted protein, acidic, cysteine-rich (osteonectin)
chr7_-_7692723 0.18 ENSDART00000183352
aadat
aminoadipate aminotransferase
chr10_+_506538 0.18 ENSDART00000141713
si:ch211-242f23.3
si:ch211-242f23.3
chr5_-_21888368 0.18 ENSDART00000020725
smarca1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
chr5_+_44805028 0.18 ENSDART00000141198
ctsla
cathepsin La
chr10_+_32050906 0.18 ENSDART00000137373
si:ch211-266i6.3
si:ch211-266i6.3
chr20_-_48701593 0.17 ENSDART00000132835
pax1b
paired box 1b
chr7_+_10911396 0.17 ENSDART00000167273
ENSDART00000081323
ENSDART00000170655
abhd17c
abhydrolase domain containing 17C
chr8_+_36582728 0.17 ENSDART00000049230
pqbp1
polyglutamine binding protein 1
chr6_+_27991943 0.17 ENSDART00000143974
ENSDART00000141354
ENSDART00000088914
ENSDART00000139367
amotl2a
angiomotin like 2a
chr1_-_45577980 0.17 ENSDART00000160961
atf7ip
activating transcription factor 7 interacting protein
chr16_-_6205790 0.16 ENSDART00000038495
ctnnb1
catenin (cadherin-associated protein), beta 1
chr14_-_32959851 0.16 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr2_+_22409249 0.16 ENSDART00000182915
zgc:56628
zgc:56628
chr22_-_11648322 0.16 ENSDART00000109596
dpp4
dipeptidyl-peptidase 4
chr11_-_6265574 0.15 ENSDART00000181974
ENSDART00000104405
ccl25b
chemokine (C-C motif) ligand 25b
chr8_-_25033681 0.15 ENSDART00000003493
nfyal
nuclear transcription factor Y, alpha, like
chr8_+_23382568 0.15 ENSDART00000129167
mapre1a
microtubule-associated protein, RP/EB family, member 1a
chr24_-_21511737 0.15 ENSDART00000109587
rnf6
ring finger protein (C3H2C3 type) 6
chr22_-_11648094 0.15 ENSDART00000191791
dpp4
dipeptidyl-peptidase 4
chr21_-_39024754 0.15 ENSDART00000056878
traf4b
tnf receptor-associated factor 4b
chr20_-_25643667 0.15 ENSDART00000137457
si:dkeyp-117h8.4
si:dkeyp-117h8.4
chr21_-_19918286 0.15 ENSDART00000180816
ppp1r3b
protein phosphatase 1, regulatory subunit 3B
chr6_+_58622831 0.15 ENSDART00000128793
sp7
Sp7 transcription factor
chr4_-_5652030 0.15 ENSDART00000010903
rsph9
radial spoke head 9 homolog
chr17_-_2690083 0.14 ENSDART00000135374
ptpn21
protein tyrosine phosphatase, non-receptor type 21
chr12_-_25380028 0.14 ENSDART00000142674
zfp36l2
zinc finger protein 36, C3H type-like 2
chr5_-_65037525 0.14 ENSDART00000158856
anxa1b
annexin A1b
chr11_-_25257595 0.14 ENSDART00000123567
snai1a
snail family zinc finger 1a
chr7_+_46003449 0.14 ENSDART00000159700
ENSDART00000173625
si:ch211-260e23.9
si:ch211-260e23.9
chr8_+_11687254 0.14 ENSDART00000042040
atp2a2a
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a
chr4_+_23125689 0.13 ENSDART00000077854
mdm2
MDM2 oncogene, E3 ubiquitin protein ligase
chr20_-_34028967 0.13 ENSDART00000153408
ENSDART00000033817
scyl3
SCY1-like, kinase-like 3
chr8_+_47633438 0.13 ENSDART00000139096
si:ch211-251b21.1
si:ch211-251b21.1
chr3_-_9722603 0.13 ENSDART00000168234
crebbpb
CREB binding protein b
chr1_+_26105141 0.13 ENSDART00000102379
ENSDART00000127154
toporsa
topoisomerase I binding, arginine/serine-rich a
chr19_-_7033636 0.13 ENSDART00000122815
ENSDART00000123443
ENSDART00000124094
daxx
death-domain associated protein
chr1_+_47165842 0.13 ENSDART00000053152
ENSDART00000167051
cbr1
carbonyl reductase 1
chr14_+_23184517 0.13 ENSDART00000181410
enox2
ecto-NOX disulfide-thiol exchanger 2
chr7_+_13639473 0.12 ENSDART00000157870
ENSDART00000032899
clpxa
caseinolytic mitochondrial matrix peptidase chaperone subunit a
chr12_-_20373058 0.12 ENSDART00000066382
aqp8a.1
aquaporin 8a, tandem duplicate 1
chr24_+_5840258 0.12 ENSDART00000087034
trpc1
transient receptor potential cation channel, subfamily C, member 1
chr11_+_24313931 0.12 ENSDART00000017599
ENSDART00000166045
rem1
RAS (RAD and GEM)-like GTP-binding 1
chr10_-_36618674 0.12 ENSDART00000135302
rsf1b.1
remodeling and spacing factor 1b, tandem duplicate 1
chr3_+_62161184 0.12 ENSDART00000090370
ENSDART00000192665
noxo1a
NADPH oxidase organizer 1a
chr13_-_25484659 0.12 ENSDART00000135321
ENSDART00000022799
tial1
TIA1 cytotoxic granule-associated RNA binding protein-like 1
chr8_-_10961991 0.12 ENSDART00000139603
trim33
tripartite motif containing 33
chr2_-_43196595 0.12 ENSDART00000141087
crema
cAMP responsive element modulator a
chr6_+_13083146 0.12 ENSDART00000172158
l3hypdh
trans-L-3-hydroxyproline dehydratase
chr19_+_9455218 0.11 ENSDART00000139385
si:ch211-288g17.3
si:ch211-288g17.3
chr12_+_10134366 0.11 ENSDART00000127343
smarcd2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
chr8_+_44677569 0.11 ENSDART00000191104
grk5l
G protein-coupled receptor kinase 5 like
chr21_-_11970199 0.11 ENSDART00000114524
nop56
NOP56 ribonucleoprotein homolog
chr1_-_44933094 0.11 ENSDART00000147527
si:dkey-9i23.14
si:dkey-9i23.14
chr25_+_30238021 0.11 ENSDART00000123220
alkbh3
alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
chr9_+_2452672 0.10 ENSDART00000193993
chn1
chimerin 1
chr18_-_15373620 0.10 ENSDART00000031752
rfx4
regulatory factor X, 4
chr2_+_21128391 0.10 ENSDART00000136814
pip4k2ab
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha b
chr5_-_57289872 0.10 ENSDART00000189893
ENSDART00000050957
fer
fer (fps/fes related) tyrosine kinase
chr15_-_25527580 0.10 ENSDART00000167005
ENSDART00000157498
hif1al
hypoxia-inducible factor 1, alpha subunit, like
chr10_-_25591194 0.10 ENSDART00000131640
tiam1a
T cell lymphoma invasion and metastasis 1a
chr1_+_54683655 0.10 ENSDART00000132785
knop1
lysine-rich nucleolar protein 1
chr6_+_35362225 0.10 ENSDART00000133783
ENSDART00000102483
rgs4
regulator of G protein signaling 4
chr12_+_19356623 0.10 ENSDART00000078284
dmc1
DNA meiotic recombinase 1
chr7_-_44604821 0.10 ENSDART00000148967
tk2
thymidine kinase 2, mitochondrial
chr6_-_31348999 0.10 ENSDART00000153734
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6
chr8_-_45867358 0.10 ENSDART00000132810
adam9
ADAM metallopeptidase domain 9
chr24_-_29586082 0.09 ENSDART00000136763
vav3a
vav 3 guanine nucleotide exchange factor a
chr19_-_35733401 0.09 ENSDART00000066712
trappc3
trafficking protein particle complex 3
chr6_+_54221654 0.09 ENSDART00000128456
pacsin1b
protein kinase C and casein kinase substrate in neurons 1b
chr8_-_44298964 0.09 ENSDART00000098520
fzd10
frizzled class receptor 10
chr12_+_27704015 0.09 ENSDART00000153256
cacna1g
calcium channel, voltage-dependent, T type, alpha 1G subunit
chr7_-_55051692 0.09 ENSDART00000170637
tpcn2
two pore segment channel 2
chr18_+_619619 0.09 ENSDART00000159846
prtga
protogenin homolog a (Gallus gallus)
chr3_+_24134418 0.09 ENSDART00000156204
si:ch211-246i5.5
si:ch211-246i5.5
chr17_+_17764979 0.09 ENSDART00000105013
alkbh1
alkB homolog 1, histone H2A dioxygenase
chr2_-_20788698 0.09 ENSDART00000181823
CABZ01020455.1

chr16_+_10264601 0.08 ENSDART00000186167
mrs2
MRS2 magnesium transporter
chr3_+_54761569 0.08 ENSDART00000135913
ENSDART00000180983
si:ch211-74m13.1
si:ch211-74m13.1
chr3_-_19200571 0.08 ENSDART00000131503
ENSDART00000012335
rfx1a
regulatory factor X, 1a (influences HLA class II expression)
chr11_-_38899816 0.08 ENSDART00000141515
pimr127
Pim proto-oncogene, serine/threonine kinase, related 127
chr10_-_25328814 0.08 ENSDART00000123820
tmem135
transmembrane protein 135
chr10_+_22775253 0.08 ENSDART00000190141
tmem88a
transmembrane protein 88 a
chr7_-_41420226 0.07 ENSDART00000074155
abcf2b
ATP-binding cassette, sub-family F (GCN20), member 2b
chr18_+_14342326 0.07 ENSDART00000181013
ENSDART00000138372
si:dkey-246g23.2
si:dkey-246g23.2
chr7_-_23745984 0.07 ENSDART00000048050
ITGB1BP2
zgc:92429
chr8_-_14121634 0.07 ENSDART00000184946
bgna
biglycan a
chr18_-_41160975 0.07 ENSDART00000187517
CABZ01005876.1

chr8_+_7737062 0.07 ENSDART00000166712
fgd1
FYVE, RhoGEF and PH domain containing 1
chr11_-_45152702 0.07 ENSDART00000168066
afmid
arylformamidase
chr18_-_15559817 0.07 ENSDART00000061681
si:ch211-245j22.3
si:ch211-245j22.3
chr1_+_2321384 0.07 ENSDART00000157662
farp1
FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
chr5_-_28767573 0.07 ENSDART00000158299
ENSDART00000043466
traf2a
Tnf receptor-associated factor 2a
chr25_+_20089986 0.07 ENSDART00000143441
ENSDART00000184073
tnni4b.2
troponin I4b, tandem duplicate 2
chr21_+_21279159 0.07 ENSDART00000148346
itpkca
inositol-trisphosphate 3-kinase Ca
chr2_+_23039041 0.07 ENSDART00000056921
csnk1g2a
casein kinase 1, gamma 2a
chr18_-_17513426 0.07 ENSDART00000146725
b3gnt9
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
chr12_-_33817114 0.06 ENSDART00000161265
twnk
twinkle mtDNA helicase
chr6_-_17206028 0.06 ENSDART00000155756
pimr3
Pim proto-oncogene, serine/threonine kinase, related 3
chr2_+_19578446 0.06 ENSDART00000164758
pimr50
Pim proto-oncogene, serine/threonine kinase, related 50
chr2_+_19578079 0.06 ENSDART00000144413
pimr50
Pim proto-oncogene, serine/threonine kinase, related 50
chr2_+_19522082 0.06 ENSDART00000146098
pimr49
Pim proto-oncogene, serine/threonine kinase, related 49
chr21_+_22828500 0.06 ENSDART00000151109
si:rp71-1p14.7
si:rp71-1p14.7
chr5_+_45140914 0.06 ENSDART00000172702
smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
chr24_+_40529346 0.05 ENSDART00000168548
CU929259.1

chr4_+_27130412 0.05 ENSDART00000145083
brd1a
bromodomain containing 1a
chr21_+_10756154 0.05 ENSDART00000074833
rx3
retinal homeobox gene 3
chr22_+_2632961 0.05 ENSDART00000106278
znf1173
zinc finger protein 1173
chr2_+_14992879 0.05 ENSDART00000137546
pimr55
Pim proto-oncogene, serine/threonine kinase, related 55
chr13_+_33268657 0.05 ENSDART00000002095
tmem39b
transmembrane protein 39B
chr14_+_30279391 0.05 ENSDART00000172794
fgl1
fibrinogen-like 1
chr23_+_36074798 0.05 ENSDART00000133760
ENSDART00000103146
hoxc11a
homeobox C11a
chr13_+_15933168 0.05 ENSDART00000131390
fignl1
fidgetin-like 1

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc11b

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0006043 glucosamine metabolic process(GO:0006041) glucosamine catabolic process(GO:0006043)
0.1 1.1 GO:0009263 deoxyribonucleotide biosynthetic process(GO:0009263)
0.1 0.1 GO:2000290 regulation of myotome development(GO:2000290)
0.1 0.4 GO:0031652 heat generation(GO:0031649) regulation of heat generation(GO:0031650) positive regulation of heat generation(GO:0031652) regulation of phospholipid biosynthetic process(GO:0071071) negative regulation of phospholipid biosynthetic process(GO:0071072)
0.1 0.4 GO:0006659 phosphatidylserine biosynthetic process(GO:0006659)
0.1 0.2 GO:0043416 regulation of skeletal muscle tissue regeneration(GO:0043416)
0.1 0.2 GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification(GO:2000055)
0.1 0.4 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.1 0.5 GO:0072393 microtubule anchoring at microtubule organizing center(GO:0072393)
0.1 0.4 GO:0015809 arginine transport(GO:0015809)
0.1 0.2 GO:2000471 regulation of hematopoietic stem cell migration(GO:2000471)
0.0 0.1 GO:0005981 regulation of glycogen catabolic process(GO:0005981)
0.0 0.2 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.1 GO:1904158 axonemal central apparatus assembly(GO:1904158)
0.0 0.3 GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage(GO:0006398)
0.0 0.3 GO:0006646 phosphatidylethanolamine biosynthetic process(GO:0006646)
0.0 0.3 GO:0031113 regulation of microtubule polymerization(GO:0031113)
0.0 0.4 GO:1904825 protein localization to microtubule(GO:0035372) protein localization to microtubule plus-end(GO:1904825)
0.0 0.2 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.0 0.2 GO:0007250 activation of NF-kappaB-inducing kinase activity(GO:0007250)
0.0 0.7 GO:0035459 cargo loading into vesicle(GO:0035459)
0.0 0.6 GO:0045974 miRNA mediated inhibition of translation(GO:0035278) negative regulation of translation, ncRNA-mediated(GO:0040033) regulation of translation, ncRNA-mediated(GO:0045974)
0.0 0.2 GO:0035552 oxidative single-stranded DNA demethylation(GO:0035552)
0.0 0.5 GO:0016075 rRNA catabolic process(GO:0016075)
0.0 0.2 GO:0031063 regulation of histone deacetylation(GO:0031063)
0.0 0.1 GO:0033688 regulation of osteoblast proliferation(GO:0033688) craniofacial suture morphogenesis(GO:0097094)
0.0 0.4 GO:0031937 methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.0 0.1 GO:1904036 negative regulation of epithelial cell apoptotic process(GO:1904036)
0.0 0.1 GO:0021557 oculomotor nerve development(GO:0021557)
0.0 0.1 GO:0060923 negative regulation of striated muscle cell differentiation(GO:0051154) negative regulation of cardiac muscle tissue development(GO:0055026) cardiac muscle cell fate commitment(GO:0060923) canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:0061317) regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901295) negative regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment(GO:1901296) negative regulation of cardiocyte differentiation(GO:1905208) negative regulation of cardiac muscle cell differentiation(GO:2000726)
0.0 0.1 GO:0007624 ultradian rhythm(GO:0007624)
0.0 0.1 GO:0038093 Fc receptor signaling pathway(GO:0038093)
0.0 0.1 GO:0042148 strand invasion(GO:0042148)
0.0 0.1 GO:1901841 regulation of high voltage-gated calcium channel activity(GO:1901841) negative regulation of high voltage-gated calcium channel activity(GO:1901842)
0.0 0.1 GO:0031392 neutrophil apoptotic process(GO:0001781) regulation of T-helper 1 type immune response(GO:0002825) positive regulation of T-helper 1 type immune response(GO:0002827) negative regulation of type 2 immune response(GO:0002829) inflammatory cell apoptotic process(GO:0006925) regulation of prostaglandin biosynthetic process(GO:0031392) positive regulation of prostaglandin biosynthetic process(GO:0031394) regulation of phospholipase A2 activity(GO:0032429) interleukin-2 production(GO:0032623) regulation of interleukin-2 production(GO:0032663) positive regulation of interleukin-2 production(GO:0032743) myeloid cell apoptotic process(GO:0033028) regulation of neutrophil apoptotic process(GO:0033029) positive regulation of neutrophil apoptotic process(GO:0033031) regulation of myeloid cell apoptotic process(GO:0033032) positive regulation of myeloid cell apoptotic process(GO:0033034) T-helper 1 type immune response(GO:0042088) positive regulation of CD4-positive, alpha-beta T cell differentiation(GO:0043372) T-helper 1 cell differentiation(GO:0045063) positive regulation of T-helper cell differentiation(GO:0045624) regulation of T-helper 1 cell differentiation(GO:0045625) positive regulation of T-helper 1 cell differentiation(GO:0045627) regulation of T-helper 2 cell differentiation(GO:0045628) negative regulation of T-helper 2 cell differentiation(GO:0045629) positive regulation of fatty acid biosynthetic process(GO:0045723) positive regulation of alpha-beta T cell differentiation(GO:0046638) neutrophil clearance(GO:0097350) negative regulation of phospholipase A2 activity(GO:1900138) positive regulation of CD4-positive, alpha-beta T cell activation(GO:2000516) regulation of unsaturated fatty acid biosynthetic process(GO:2001279) positive regulation of unsaturated fatty acid biosynthetic process(GO:2001280)
0.0 0.3 GO:1904263 positive regulation of TORC1 signaling(GO:1904263)
0.0 0.2 GO:0016578 histone deubiquitination(GO:0016578)
0.0 0.2 GO:0003365 establishment of cell polarity involved in ameboidal cell migration(GO:0003365) aorta morphogenesis(GO:0035909) dorsal aorta morphogenesis(GO:0035912)
0.0 0.2 GO:0046512 diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.1 GO:0016191 synaptic vesicle uncoating(GO:0016191)
0.0 0.1 GO:0060898 eye field cell fate commitment involved in camera-type eye formation(GO:0060898)
0.0 0.6 GO:0001878 response to yeast(GO:0001878)
0.0 0.3 GO:0008078 mesodermal cell migration(GO:0008078)
0.0 0.3 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315)
0.0 0.2 GO:0032008 positive regulation of TOR signaling(GO:0032008)
0.0 0.5 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.2 GO:0009791 post-embryonic development(GO:0009791)
0.0 0.2 GO:0002084 protein depalmitoylation(GO:0002084) macromolecule depalmitoylation(GO:0098734)
0.0 0.1 GO:0021910 smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021910)
0.0 0.4 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891)
0.0 0.1 GO:0031498 nucleosome disassembly(GO:0006337) chromatin disassembly(GO:0031498) protein-DNA complex disassembly(GO:0032986)
0.0 0.2 GO:0071174 mitotic spindle assembly checkpoint(GO:0007094) spindle checkpoint(GO:0031577) negative regulation of mitotic metaphase/anaphase transition(GO:0045841) spindle assembly checkpoint(GO:0071173) mitotic spindle checkpoint(GO:0071174)
0.0 0.3 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.0 0.2 GO:0031952 regulation of protein autophosphorylation(GO:0031952)
0.0 0.3 GO:0022011 myelination in peripheral nervous system(GO:0022011)
0.0 0.1 GO:0034354 tryptophan catabolic process to kynurenine(GO:0019441) 'de novo' NAD biosynthetic process from tryptophan(GO:0034354) 'de novo' NAD biosynthetic process(GO:0034627)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0031251 PAN complex(GO:0031251)
0.1 0.3 GO:0098890 extrinsic component of postsynaptic membrane(GO:0098890)
0.1 0.4 GO:0016589 NURF complex(GO:0016589)
0.1 0.5 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.1 0.3 GO:0031258 lamellipodium membrane(GO:0031258)
0.0 0.1 GO:0001534 radial spoke(GO:0001534)
0.0 0.4 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.0 0.5 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 0.2 GO:1990131 EGO complex(GO:0034448) Gtr1-Gtr2 GTPase complex(GO:1990131)
0.0 0.1 GO:0031213 RSF complex(GO:0031213)
0.0 0.3 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.2 GO:0070390 transcription export complex 2(GO:0070390)
0.0 0.3 GO:0036449 microtubule minus-end(GO:0036449)
0.0 0.1 GO:0032983 kainate selective glutamate receptor complex(GO:0032983)
0.0 0.2 GO:0005915 cell-cell adherens junction(GO:0005913) zonula adherens(GO:0005915)
0.0 0.7 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.0 0.2 GO:0089701 U2AF(GO:0089701)
0.0 0.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.4 GO:1990752 microtubule plus-end(GO:0035371) microtubule end(GO:1990752)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.2 1.1 GO:0016728 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)
0.1 0.5 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.1 0.9 GO:0001972 retinoic acid binding(GO:0001972)
0.1 0.3 GO:0051059 NF-kappaB binding(GO:0051059)
0.1 0.3 GO:0008117 sphinganine-1-phosphate aldolase activity(GO:0008117)
0.1 0.5 GO:0034452 dynactin binding(GO:0034452)
0.1 0.3 GO:0004307 diacylglycerol cholinephosphotransferase activity(GO:0004142) ethanolaminephosphotransferase activity(GO:0004307)
0.1 0.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.4 GO:0036137 kynurenine-oxoglutarate transaminase activity(GO:0016212) kynurenine aminotransferase activity(GO:0036137)
0.1 0.3 GO:0030504 inorganic diphosphate transmembrane transporter activity(GO:0030504)
0.0 0.3 GO:0071933 Arp2/3 complex binding(GO:0071933)
0.0 0.4 GO:0005332 gamma-aminobutyric acid:sodium symporter activity(GO:0005332)
0.0 0.1 GO:0015277 kainate selective glutamate receptor activity(GO:0015277)
0.0 0.1 GO:0000150 recombinase activity(GO:0000150)
0.0 0.2 GO:0004758 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.0 0.3 GO:0043325 phosphatidylinositol-3,4-bisphosphate binding(GO:0043325)
0.0 0.2 GO:0046974 histone methyltransferase activity (H3-K9 specific)(GO:0046974)
0.0 0.1 GO:0004061 arylformamidase activity(GO:0004061)
0.0 0.5 GO:0036002 pre-mRNA binding(GO:0036002)
0.0 0.1 GO:0019834 phospholipase A2 inhibitor activity(GO:0019834)
0.0 0.1 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.0 0.2 GO:0045294 alpha-catenin binding(GO:0045294)
0.0 1.1 GO:0008408 3'-5' exonuclease activity(GO:0008408)
0.0 0.3 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.3 GO:0051011 microtubule minus-end binding(GO:0051011)
0.0 0.2 GO:0008187 poly-pyrimidine tract binding(GO:0008187) poly(U) RNA binding(GO:0008266)
0.0 0.1 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.0 0.1 GO:0016176 superoxide-generating NADPH oxidase activator activity(GO:0016176)
0.0 0.2 GO:0072542 phosphatase activator activity(GO:0019211) protein phosphatase activator activity(GO:0072542)
0.0 0.0 GO:0034416 bisphosphoglycerate phosphatase activity(GO:0034416)
0.0 0.1 GO:0072345 NAADP-sensitive calcium-release channel activity(GO:0072345)
0.0 0.4 GO:0051010 microtubule plus-end binding(GO:0051010)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID S1P META PATHWAY Sphingosine 1-phosphate (S1P) pathway
0.0 1.1 PID E2F PATHWAY E2F transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS Genes involved in Apoptotic cleavage of cell adhesion proteins
0.1 1.1 REACTOME SYNTHESIS AND INTERCONVERSION OF NUCLEOTIDE DI AND TRIPHOSPHATES Genes involved in Synthesis and interconversion of nucleotide di- and triphosphates
0.0 0.8 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0 0.5 REACTOME TRYPTOPHAN CATABOLISM Genes involved in Tryptophan catabolism
0.0 0.3 REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1)
0.0 0.3 REACTOME DCC MEDIATED ATTRACTIVE SIGNALING Genes involved in DCC mediated attractive signaling
0.0 0.3 REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS Genes involved in Cell-extracellular matrix interactions
0.0 0.4 REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING Genes involved in Negative regulators of RIG-I/MDA5 signaling
0.0 0.2 REACTOME NEPHRIN INTERACTIONS Genes involved in Nephrin interactions