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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxc13a

Z-value: 0.72

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Transcription factors associated with hoxc13a

Gene Symbol Gene ID Gene Info
ENSDARG00000070353 homeobox C13a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxc13adr11_v1_chr23_+_36052944_36052944-0.798.3e-05Click!

Activity profile of hoxc13a motif

Sorted Z-values of hoxc13a motif

Promoter Log-likelihood Transcript Gene Gene Info
chr19_+_20201254 1.63 ENSDART00000010140
insulin-like growth factor 2 mRNA binding protein 3
chr19_+_20201593 1.36 ENSDART00000163026
insulin-like growth factor 2 mRNA binding protein 3
chr7_-_48263516 1.33 ENSDART00000006619
ENSDART00000142370
ENSDART00000148273
ENSDART00000147968
RNA binding protein with multiple splicing 2b
chr9_+_1365747 1.16 ENSDART00000140917
ENSDART00000036605
protein kinase, interferon-inducible double stranded RNA dependent activator
chr7_-_26518086 1.16 ENSDART00000058913
eukaryotic translation initiation factor 4A1A
chr14_-_7045009 0.92 ENSDART00000112082
RUN and FYVE domain containing 1
chr20_-_2713120 0.86 ENSDART00000138753
ENSDART00000104606
arginyl-tRNA synthetase 2, mitochondrial (putative)
chr3_+_46764278 0.82 ENSDART00000136051
ENSDART00000164930
protein kinase C substrate 80K-H
chr7_+_5905091 0.82 ENSDART00000167099
Histone H3.2
chr25_+_3294150 0.81 ENSDART00000030683
thymopoietin b
chr6_-_14038804 0.80 ENSDART00000184606
ENSDART00000184609
ets variant 5b
chr22_-_3299100 0.77 ENSDART00000160305
si:zfos-943e10.1
chr20_+_48116476 0.76 ENSDART00000043938
translocation associated membrane protein 2
chr18_-_43866001 0.71 ENSDART00000150218
trehalase (brush-border membrane glycoprotein)
chr22_-_3299355 0.71 ENSDART00000190993
si:zfos-943e10.1
chr4_-_2727491 0.70 ENSDART00000141760
ENSDART00000039083
ENSDART00000134442
solute carrier organic anion transporter family, member 1C1
chr18_-_43866526 0.70 ENSDART00000111309
trehalase (brush-border membrane glycoprotein)
chr13_+_8892784 0.69 ENSDART00000075054
ENSDART00000143705
thyroid adenoma associated
chr18_+_14633974 0.66 ENSDART00000133834
VPS9 domain containing 1
chr14_+_2487672 0.65 ENSDART00000170629
ENSDART00000123063
fibroblast growth factor 18a
chr10_+_24690534 0.63 ENSDART00000079549
transmembrane phosphatase with tensin homology
chr6_+_49771626 0.62 ENSDART00000134207
cathepsin Z
chr17_-_8673567 0.56 ENSDART00000192714
ENSDART00000012546
C-terminal binding protein 2a
chr7_+_24114694 0.55 ENSDART00000127177
mitochondrial ribosomal protein L52
chr5_-_12031174 0.54 ENSDART00000159896
cytosolic arginine sensor for mTORC1 subunit 1
chr9_+_45428041 0.53 ENSDART00000193087
adenosine deaminase, RNA-specific, B1b
chr17_-_8673278 0.51 ENSDART00000171850
ENSDART00000017337
ENSDART00000148504
ENSDART00000148808
C-terminal binding protein 2a
chr2_+_24374305 0.50 ENSDART00000022379
nuclear receptor subfamily 2, group F, member 6a
chr17_+_31221761 0.49 ENSDART00000155580
coiled-coil domain containing 32
chr20_-_154989 0.49 ENSDART00000064542
ribosome production factor 2 homolog
chr10_+_42589391 0.49 ENSDART00000067689
ENSDART00000075259
fibroblast growth factor receptor 1b
chr6_+_49771372 0.48 ENSDART00000063251
cathepsin Z
chr10_+_42589707 0.47 ENSDART00000075269
fibroblast growth factor receptor 1b
chr20_-_27190393 0.45 ENSDART00000149024
BTB (POZ) domain containing 7
chr22_+_24214665 0.43 ENSDART00000163980
ENSDART00000167996
glutaredoxin 2
chr12_-_27212880 0.43 ENSDART00000002835
proteasome activator subunit 3
chr19_+_34230108 0.42 ENSDART00000141950
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
chr23_-_12158685 0.42 ENSDART00000135035
family with sequence similarity 217, member B
chr21_+_42226113 0.41 ENSDART00000170362
gamma-aminobutyric acid type A receptor beta2 subunit
chr7_+_29890292 0.41 ENSDART00000170403
ENSDART00000168600
talin 2a
chr14_+_16083818 0.41 ENSDART00000168462
ring finger protein 103
chr20_-_31252809 0.41 ENSDART00000137236
hippocalcin-like 1
chr13_+_7241170 0.39 ENSDART00000109434
apoptosis-inducing factor, mitochondrion-associated, 2
chr7_-_46777876 0.39 ENSDART00000193954
teashirt zinc finger homeobox 3b
chr9_-_12574473 0.39 ENSDART00000191372
ENSDART00000193667
insulin-like growth factor 2 mRNA binding protein 2a
chr19_+_366034 0.38 ENSDART00000093383
vacuolar protein sorting 72 homolog (S. cerevisiae)
chr4_-_73488406 0.37 ENSDART00000115002
si:ch73-266f23.1
chr22_+_10676981 0.37 ENSDART00000138016
hyaluronoglucosaminidase 2b
chr14_-_26425416 0.37 ENSDART00000088690
lectin, mannose-binding 2
chr23_+_9508538 0.36 ENSDART00000010697
oxysterol binding protein-like 2b
chr1_-_25144439 0.36 ENSDART00000132355
F-box and WD repeat domain containing 7
chr9_-_33608427 0.36 ENSDART00000100849
calcium/calmodulin-dependent serine protein kinase a
chr2_-_37353098 0.36 ENSDART00000056522
SKI-like proto-oncogene a
chr6_+_13206516 0.35 ENSDART00000036927
NADH dehydrogenase (ubiquinone) Fe-S protein 1
chr17_+_13099476 0.35 ENSDART00000012670
pinin, desmosome associated protein
chr9_-_25443094 0.34 ENSDART00000105492
activin A receptor type 2Aa
chr13_-_25774183 0.34 ENSDART00000046981
PDZ and LIM domain 1 (elfin)
chr19_+_43017931 0.33 ENSDART00000132213
sodium/potassium transporting ATPase interacting 1
chr9_-_41088279 0.33 ENSDART00000000564
asparagine synthetase domain containing 1
chr10_-_3416258 0.33 ENSDART00000005168
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
chr22_-_24297510 0.32 ENSDART00000163297
si:ch211-117l17.6
chr22_+_24215007 0.32 ENSDART00000162227
glutaredoxin 2
chr5_-_19014589 0.29 ENSDART00000002624
RAN binding protein 1
chr23_+_33934228 0.28 ENSDART00000134237
si:ch211-148l7.4
chr20_+_33744065 0.28 ENSDART00000015000
HEN methyltransferase 1
chr14_+_35464994 0.27 ENSDART00000115307
si:ch211-203d1.3
chr7_-_6467510 0.27 ENSDART00000166041
Histone H3.2
chr25_-_13871118 0.27 ENSDART00000160866
cryptochrome circadian clock 2
chr12_-_22400999 0.26 ENSDART00000153194
si:dkey-38p12.3
chr24_-_6158933 0.26 ENSDART00000021609
glutamate decarboxylase 2
chr3_+_35005730 0.26 ENSDART00000029451
protein kinase C, beta b
chr8_-_28449782 0.24 ENSDART00000062702
CCAAT/enhancer binding protein (C/EBP), beta
chr3_+_35005062 0.24 ENSDART00000181163
protein kinase C, beta b
chr25_+_28776562 0.23 ENSDART00000109702
solute carrier family 41 (magnesium transporter), member 2a
chr3_+_31058464 0.23 ENSDART00000153381
si:dkey-66i24.7
chr3_+_29640996 0.23 ENSDART00000011052
eukaryotic translation initiation factor 3, subunit D
chr19_-_31007417 0.22 ENSDART00000048144
retinoblastoma binding protein 4
chr5_-_71838520 0.22 ENSDART00000174396

chr3_-_48612078 0.22 ENSDART00000169923
nudE neurodevelopment protein 1-like 1b
chr9_+_38967998 0.20 ENSDART00000135581
microtubule-associated protein 2
chr16_-_4203022 0.18 ENSDART00000018686
ribosomal RNA processing 15 homolog
chr19_+_30884960 0.18 ENSDART00000140603
ENSDART00000183224
ENSDART00000135484
ENSDART00000139599
tyrosyl-tRNA synthetase
chr25_+_31276842 0.18 ENSDART00000187238
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr11_+_31730680 0.18 ENSDART00000145497
diaphanous-related formin 3
chr14_-_5546497 0.16 ENSDART00000054877
fibroblast growth factor 24
chr15_-_24883956 0.16 ENSDART00000113199
aryl hydrocarbon receptor interacting protein-like 1
chr6_-_19664848 0.15 ENSDART00000159749
ubiquitin specific peptidase 43a
chr16_+_33144306 0.15 ENSDART00000101953
rhomboid, veinlet-like 2 (Drosophila)
chr6_+_42338309 0.13 ENSDART00000015277
glutathione peroxidase 1b
chr5_+_21891305 0.13 ENSDART00000136788
si:ch73-92i20.1
chr6_-_19665114 0.12 ENSDART00000168985
ubiquitin specific peptidase 43a
chr9_+_22003942 0.11 ENSDART00000091013
si:dkey-57a22.15
chr9_+_21990095 0.11 ENSDART00000146829
ENSDART00000133515
ENSDART00000193582
si:dkey-57a22.13
chr3_+_23691847 0.11 ENSDART00000078453
homeobox B7a
chr4_-_55227527 0.10 ENSDART00000184323
ENSDART00000148091
si:dkey-61p9.9
chr21_-_21537452 0.09 ENSDART00000142549
odorant receptor, family H, subfamily 133, member 7
chr18_+_17151916 0.09 ENSDART00000175488
thyrotropin releasing hormone receptor 2
chr13_+_40729618 0.09 ENSDART00000074829
ankyrin repeat domain 2 (stretch responsive muscle)
chr10_-_34867401 0.09 ENSDART00000145545
doublecortin-like kinase 1a
chr3_-_7656059 0.08 ENSDART00000170917
JunB proto-oncogene, AP-1 transcription factor subunit b
chr2_-_56655769 0.08 ENSDART00000113589
glutathione peroxidase 4b
chr25_+_19947298 0.08 ENSDART00000067648
potassium voltage-gated channel, shaker-related, subfamily, member 6 a
chr15_-_917274 0.08 ENSDART00000156624
si:dkey-77f5.15
chr10_+_37927100 0.07 ENSDART00000172548
basic helix-loop-helix family, member a9
chr24_+_25032340 0.07 ENSDART00000005845
myotubularin related protein 6
chr16_-_17541890 0.07 ENSDART00000131328
chloride channel, voltage-sensitive 1b
chr21_-_21594841 0.07 ENSDART00000132490
odorant receptor, family H, subfamily 133, member 2
chr25_-_31739309 0.07 ENSDART00000098896
acyl-CoA thioesterase 19
chr12_-_3828854 0.07 ENSDART00000158529
TAO kinase 2b
chr1_+_18965750 0.06 ENSDART00000132379
LIM and calponin homology domains 1a
chr6_-_54816567 0.06 ENSDART00000150079
troponin I type 1b (skeletal, slow)
chr15_+_27387555 0.06 ENSDART00000018603
T-box 4
chr25_-_7887274 0.06 ENSDART00000157276
si:ch73-151m17.5
chr16_-_26296477 0.05 ENSDART00000157553
Ets2 repressor factor like 1
chr1_-_17803614 0.05 ENSDART00000138475
sorbin and SH3 domain containing 2a
chr3_+_59851537 0.05 ENSDART00000180997

chr24_+_1294176 0.05 ENSDART00000106637
si:ch73-134f24.1
chr9_+_25776194 0.04 ENSDART00000144499
zinc finger E-box binding homeobox 2a
chr16_+_33144112 0.04 ENSDART00000183149
rhomboid, veinlet-like 2 (Drosophila)
chr14_+_36497250 0.04 ENSDART00000184727
si:dkey-237h12.3
chr25_+_31277415 0.04 ENSDART00000036275
troponin I type 2a (skeletal, fast), tandem duplicate 4
chr6_+_49412754 0.04 ENSDART00000027398
potassium voltage-gated channel, shaker-related subfamily, member 2a
chr9_-_1959917 0.04 ENSDART00000082359
homeobox D3a
chr4_+_37485430 0.03 ENSDART00000182667
si:dkeyp-86c4.1
chr6_+_52869892 0.03 ENSDART00000146143
si:dkeyp-3f10.16
chr25_-_3892686 0.03 ENSDART00000043172
transmembrane protein 258
chr8_+_14792830 0.03 ENSDART00000139972
calcium channel, voltage-dependent, R type, alpha 1E subunit a
chr4_+_41835660 0.02 ENSDART00000171428
si:ch211-268b14.2
chr20_-_27086143 0.02 ENSDART00000008590
inositol-tetrakisphosphate 1-kinase a
chr14_+_23811808 0.02 ENSDART00000014411
potassium channel tetramerization domain containing 16a
chr15_-_24884784 0.01 ENSDART00000181808
aryl hydrocarbon receptor interacting protein-like 1
chr1_-_22370660 0.01 ENSDART00000127506
si:ch73-380n15.2
chr7_+_10563017 0.01 ENSDART00000193520
ENSDART00000173125
zinc finger, AN1-type domain 6
chr11_-_16093018 0.00 ENSDART00000139309
ENSDART00000139819
si:dkey-205k8.5
chr9_-_33749556 0.00 ENSDART00000149383
Norrie disease (pseudoglioma)

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxc13a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0005991 trehalose metabolic process(GO:0005991)
0.3 1.3 GO:0051148 smooth muscle cell differentiation(GO:0051145) negative regulation of muscle cell differentiation(GO:0051148)
0.2 1.4 GO:0030422 production of siRNA involved in RNA interference(GO:0030422)
0.2 1.1 GO:0070073 clustering of voltage-gated calcium channels(GO:0070073)
0.1 0.4 GO:0031642 negative regulation of myelination(GO:0031642) negative regulation of neurological system process(GO:0031645)
0.1 0.3 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
0.1 0.3 GO:0006529 asparagine biosynthetic process(GO:0006529)
0.1 0.8 GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation(GO:0006616)
0.1 0.2 GO:0002191 cap-dependent translational initiation(GO:0002191)
0.1 0.5 GO:0007100 mitotic centrosome separation(GO:0007100) centrosome separation(GO:0051299)
0.1 1.0 GO:0035108 limb morphogenesis(GO:0035108)
0.0 0.5 GO:0006382 adenosine to inosine editing(GO:0006382)
0.0 1.4 GO:0032543 mitochondrial translation(GO:0032543)
0.0 3.4 GO:0051028 mRNA transport(GO:0051028)
0.0 1.2 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.0 0.5 GO:1904262 negative regulation of TORC1 signaling(GO:1904262)
0.0 0.8 GO:0006491 N-glycan processing(GO:0006491)
0.0 0.7 GO:0043252 sodium-independent organic anion transport(GO:0043252)
0.0 0.8 GO:0060974 cell migration involved in heart formation(GO:0060974)
0.0 1.0 GO:0036342 post-anal tail morphogenesis(GO:0036342)
0.0 0.7 GO:1990798 pancreas regeneration(GO:1990798)
0.0 0.4 GO:0030214 hyaluronan catabolic process(GO:0030214)
0.0 0.5 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.2 GO:0044030 regulation of DNA methylation(GO:0044030)
0.0 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.0 0.4 GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway(GO:0030512) negative regulation of cellular response to transforming growth factor beta stimulus(GO:1903845)
0.0 0.6 GO:0051896 regulation of protein kinase B signaling(GO:0051896)
0.0 0.3 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.0 0.4 GO:0008637 apoptotic mitochondrial changes(GO:0008637)
0.0 0.2 GO:0000470 maturation of LSU-rRNA(GO:0000470)
0.0 0.5 GO:0061138 morphogenesis of a branching epithelium(GO:0061138)
0.0 0.5 GO:0050853 B cell receptor signaling pathway(GO:0050853)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0017177 glucosidase II complex(GO:0017177)
0.1 0.4 GO:0008537 proteasome activator complex(GO:0008537)
0.1 0.5 GO:0061700 GATOR2 complex(GO:0061700)
0.1 0.2 GO:0033186 CAF-1 complex(GO:0033186)
0.0 0.4 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.3 GO:0048179 activin receptor complex(GO:0048179)
0.0 0.3 GO:0030057 desmosome(GO:0030057)
0.0 0.1 GO:0016460 myosin II complex(GO:0016460)
0.0 0.6 GO:0005762 organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.2 GO:0016282 eukaryotic 43S preinitiation complex(GO:0016282)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0015927 alpha,alpha-trehalase activity(GO:0004555) trehalase activity(GO:0015927)
0.2 0.5 GO:0034618 arginine binding(GO:0034618)
0.2 0.8 GO:0004362 glutathione-disulfide reductase activity(GO:0004362)
0.1 0.4 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.1 0.6 GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity(GO:0016314)
0.1 0.8 GO:0005105 type 1 fibroblast growth factor receptor binding(GO:0005105)
0.1 0.4 GO:0033906 hyaluronoglucuronidase activity(GO:0033906)
0.1 0.3 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.1 0.3 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.1 0.2 GO:0098808 mRNA cap binding(GO:0098808)
0.1 1.0 GO:0005007 fibroblast growth factor-activated receptor activity(GO:0005007)
0.1 0.4 GO:0061133 endopeptidase activator activity(GO:0061133)
0.1 0.5 GO:0035173 histone kinase activity(GO:0035173)
0.0 0.5 GO:0003726 double-stranded RNA adenosine deaminase activity(GO:0003726)
0.0 0.7 GO:0015347 sodium-independent organic anion transmembrane transporter activity(GO:0015347)
0.0 0.9 GO:0016875 aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876)
0.0 3.4 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 1.2 GO:0003725 double-stranded RNA binding(GO:0003725)
0.0 0.4 GO:0005537 mannose binding(GO:0005537)
0.0 0.1 GO:0061629 RNA polymerase II sequence-specific DNA binding transcription factor binding(GO:0061629)
0.0 0.3 GO:0017002 activin-activated receptor activity(GO:0017002)
0.0 1.5 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.3 GO:0051393 muscle alpha-actinin binding(GO:0051371) alpha-actinin binding(GO:0051393)
0.0 0.1 GO:0032038 myosin head/neck binding(GO:0032028) myosin II head/neck binding(GO:0032034) myosin II heavy chain binding(GO:0032038)
0.0 0.4 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.1 GO:0047066 phospholipid-hydroperoxide glutathione peroxidase activity(GO:0047066)
0.0 0.1 GO:0004997 thyrotropin-releasing hormone receptor activity(GO:0004997)
0.0 1.1 GO:0051287 NAD binding(GO:0051287)
0.0 0.4 GO:0015248 sterol transporter activity(GO:0015248)
0.0 1.3 GO:0042803 protein homodimerization activity(GO:0042803)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.2 PID CERAMIDE PATHWAY Ceramide signaling pathway
0.0 0.3 PID CIRCADIAN PATHWAY Circadian rhythm pathway
0.0 0.4 PID MYC PATHWAY C-MYC pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.4 REACTOME DIGESTION OF DIETARY CARBOHYDRATE Genes involved in Digestion of dietary carbohydrate
0.1 0.8 REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING Genes involved in Advanced glycosylation endproduct receptor signaling
0.1 0.7 REACTOME TRANSPORT OF ORGANIC ANIONS Genes involved in Transport of organic anions
0.0 0.9 REACTOME MITOCHONDRIAL TRNA AMINOACYLATION Genes involved in Mitochondrial tRNA aminoacylation
0.0 1.1 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis
0.0 0.3 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.0 3.0 REACTOME DIABETES PATHWAYS Genes involved in Diabetes pathways
0.0 0.4 REACTOME O LINKED GLYCOSYLATION OF MUCINS Genes involved in O-linked glycosylation of mucins