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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxd10a

Z-value: 0.26

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Transcription factors associated with hoxd10a

Gene Symbol Gene ID Gene Info
hoxd10a
ENSDARG00000057859 homeobox D10a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd10adr11_v1_chr9_-_1970071_1970071-0.312.1e-01Click!

Activity profile of hoxd10a motif

Sorted Z-values of hoxd10a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr23_+_28322986 0.91 ENSDART00000134710
birc5b
baculoviral IAP repeat containing 5b
chr1_-_18811517 0.68 ENSDART00000142026
si:dkey-167i21.2
si:dkey-167i21.2
chr21_+_5192016 0.42 ENSDART00000139288
si:dkey-121h17.7
si:dkey-121h17.7
chr12_+_30788912 0.38 ENSDART00000160422
aldh18a1
aldehyde dehydrogenase 18 family, member A1
chr3_-_26191960 0.36 ENSDART00000113843
ypel3
yippee-like 3
chr11_-_39118882 0.34 ENSDART00000113185
ENSDART00000156526
ap5b1
adaptor-related protein complex 5, beta 1 subunit
chr25_-_2723682 0.32 ENSDART00000113382
adpgk
ADP-dependent glucokinase
chr3_-_26184018 0.31 ENSDART00000191604
si:ch211-11k18.4
si:ch211-11k18.4
chr21_+_34167178 0.31 ENSDART00000158308
trpc5b
transient receptor potential cation channel, subfamily C, member 5b
chr1_-_55068941 0.31 ENSDART00000152143
ENSDART00000152590
peli1a
pellino E3 ubiquitin protein ligase 1a
chr6_-_14040136 0.30 ENSDART00000065361
ENSDART00000179765
etv5b
ets variant 5b
chr9_+_19489304 0.29 ENSDART00000151920
si:ch211-140m22.7
si:ch211-140m22.7
chr9_-_19489264 0.29 ENSDART00000122894
wdr4
WD repeat domain 4
chr6_-_39521832 0.29 ENSDART00000065038
atf1
activating transcription factor 1
chr9_+_29643036 0.28 ENSDART00000023210
ENSDART00000175160
trim13
tripartite motif containing 13
chr17_+_31621788 0.28 ENSDART00000111629
ENSDART00000157148
cinp
cyclin-dependent kinase 2 interacting protein
chr9_-_3519717 0.27 ENSDART00000145043
dcaf17
ddb1 and cul4 associated factor 17
chr3_-_40768548 0.27 ENSDART00000004923
smurf1
SMAD specific E3 ubiquitin protein ligase 1
chr14_+_38786298 0.25 ENSDART00000164440
si:ch211-195b11.3
si:ch211-195b11.3
chr18_+_7543347 0.25 ENSDART00000103467
arf5
ADP-ribosylation factor 5
chr4_-_16824556 0.24 ENSDART00000165289
ENSDART00000185839
gys2
glycogen synthase 2
chr2_+_21356242 0.24 ENSDART00000145670
ENSDART00000146600
ctdsplb
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b
chr6_+_13201358 0.24 ENSDART00000190290
CT009620.1

chr25_-_12412704 0.24 ENSDART00000168275
det1
DET1, COP1 ubiquitin ligase partner
chr20_-_25445237 0.24 ENSDART00000145034
ENSDART00000018049
mrpl19
mitochondrial ribosomal protein L19
chr21_+_3796196 0.23 ENSDART00000146754
spout1
SPOUT domain containing methyltransferase 1
chr19_-_3056235 0.23 ENSDART00000137020
bop1
block of proliferation 1
chr11_-_27953135 0.23 ENSDART00000168338
ece1
endothelin converting enzyme 1
chr11_+_14104417 0.21 ENSDART00000059752
ENSDART00000186575
med16
mediator complex subunit 16
chr11_-_23687158 0.21 ENSDART00000189599
pik3c2b
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta
chr15_-_10455438 0.20 ENSDART00000158958
ENSDART00000192971
ENSDART00000162133
ENSDART00000185071
ENSDART00000192444
ENSDART00000165668
ENSDART00000175825
tenm4
teneurin transmembrane protein 4
chr19_+_13994563 0.19 ENSDART00000164696
tmem222b
transmembrane protein 222b
chr10_-_26985231 0.18 ENSDART00000050585
znhit2
zinc finger, HIT-type containing 2
chr21_+_3796620 0.18 ENSDART00000099535
ENSDART00000144515
spout1
SPOUT domain containing methyltransferase 1
chr21_+_21279159 0.18 ENSDART00000148346
itpkca
inositol-trisphosphate 3-kinase Ca
chr25_-_2723902 0.16 ENSDART00000143721
ENSDART00000175224
adpgk
ADP-dependent glucokinase
chr6_+_29386728 0.16 ENSDART00000104303
actl6a
actin-like 6A
chr18_-_2222128 0.16 ENSDART00000171402
pigb
phosphatidylinositol glycan anchor biosynthesis, class B
chr11_-_31039533 0.15 ENSDART00000127355
ier2b
immediate early response 2b
chr13_-_24669258 0.15 ENSDART00000000831
znf511
zinc finger protein 511
chr5_-_23805387 0.15 ENSDART00000133805
gbgt1l4
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4
chr13_+_2442841 0.15 ENSDART00000114456
ENSDART00000137124
ENSDART00000193737
ENSDART00000189722
ENSDART00000187485
arfgef3
ARFGEF family member 3
chr10_+_44692272 0.14 ENSDART00000157458
ubc
ubiquitin C
chr22_+_22302614 0.14 ENSDART00000049434
scamp4
secretory carrier membrane protein 4
chr6_-_25165693 0.14 ENSDART00000167259
znf326
zinc finger protein 326
chr13_-_31017960 0.14 ENSDART00000145287
wdfy4
WDFY family member 4
chr23_+_12852655 0.13 ENSDART00000183015
smc1al
structural maintenance of chromosomes 1A, like
chr2_-_1486023 0.13 ENSDART00000113774
si:ch211-188c16.1
si:ch211-188c16.1
chr10_-_2788668 0.13 ENSDART00000131749
ENSDART00000124356
ENSDART00000085031
ash2l
ash2 (absent, small, or homeotic)-like (Drosophila)
chr2_-_23349116 0.13 ENSDART00000099690
fam129ab
family with sequence similarity 129, member Ab
chr7_+_17973269 0.13 ENSDART00000079969
kcnk7
potassium channel, subfamily K, member 7
chr16_+_813780 0.13 ENSDART00000162474
ENSDART00000161774
irx1a
iroquois homeobox 1a
chr10_-_3138403 0.13 ENSDART00000183365
ube2l3a
ubiquitin-conjugating enzyme E2L 3a
chr10_-_45379831 0.12 ENSDART00000186205
CABZ01117348.1

chr18_+_15644559 0.12 ENSDART00000061794
nr1h4
nuclear receptor subfamily 1, group H, member 4
chr18_-_20458412 0.12 ENSDART00000012241
kif23
kinesin family member 23
chr5_+_6672870 0.11 ENSDART00000126598
pxna
paxillin a
chr5_+_50912729 0.11 ENSDART00000190837
col4a3bpa
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a
chr1_-_19764038 0.10 ENSDART00000005733
tma16
translation machinery associated 16 homolog
chr20_-_30931139 0.10 ENSDART00000006778
ENSDART00000146376
acat2
acetyl-CoA acetyltransferase 2
chr8_-_53166975 0.10 ENSDART00000114683
rbsn
rabenosyn, RAB effector
chr5_+_35458346 0.10 ENSDART00000141239
erlin2
ER lipid raft associated 2
chr9_+_21151138 0.09 ENSDART00000133903
hao2
hydroxyacid oxidase 2 (long chain)
chr21_-_11654422 0.08 ENSDART00000081614
ENSDART00000132699
cast
calpastatin
chr2_-_42628028 0.08 ENSDART00000179866
myo10
myosin X
chr23_-_17451264 0.08 ENSDART00000190748
tpd52l2b
tumor protein D52-like 2b
chr5_+_30986512 0.08 ENSDART00000005893
ube2g1a
ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast)
chr3_-_36246899 0.08 ENSDART00000141106
ENSDART00000059506
ENSDART00000158701
gps1
G protein pathway suppressor 1
chr6_-_40921412 0.08 ENSDART00000076097
ENSDART00000188364
sfi1
SFI1 centrin binding protein
chr3_-_43954343 0.08 ENSDART00000157580
ubfd1
ubiquitin family domain containing 1
chr6_+_12316438 0.08 ENSDART00000156854
si:dkey-276j7.2
si:dkey-276j7.2
chr11_-_35970966 0.08 ENSDART00000188805
itpr1b
inositol 1,4,5-trisphosphate receptor, type 1b
chr8_+_36142734 0.07 ENSDART00000159361
ENSDART00000161194
mhc2b
major histocompatibility complex class II integral membrane beta chain gene
chr18_-_42395161 0.07 ENSDART00000098641
cntn5
contactin 5
chr9_-_3519253 0.06 ENSDART00000169586
dcaf17
ddb1 and cul4 associated factor 17
chr6_+_9793791 0.06 ENSDART00000149896
als2b
amyotrophic lateral sclerosis 2b (juvenile)
chr5_+_10084100 0.06 ENSDART00000109236
si:ch211-207k7.4
si:ch211-207k7.4
chr22_-_15010688 0.06 ENSDART00000139892
elfn2a
extracellular leucine-rich repeat and fibronectin type III domain containing 2a
chr14_-_32959851 0.06 ENSDART00000075157
chic1
cysteine-rich hydrophobic domain 1
chr20_+_18993452 0.06 ENSDART00000025509
tdh
L-threonine dehydrogenase
chr21_+_15295685 0.06 ENSDART00000135603
BX901878.1

chr16_-_16152199 0.06 ENSDART00000012718
fabp11b
fatty acid binding protein 11b
chr9_+_3519191 0.05 ENSDART00000008606
mettl8
methyltransferase like 8
chr24_+_15655069 0.05 ENSDART00000042943
ENSDART00000181296
fbxo15
F-box protein 15
chr19_+_43828104 0.05 ENSDART00000166031
eloa
elongin A
chr9_-_22272181 0.05 ENSDART00000113174
crygm2d7
crystallin, gamma M2d7
chr17_-_12764360 0.04 ENSDART00000003418
brms1la
breast cancer metastasis-suppressor 1-like a
chr1_+_32341734 0.04 ENSDART00000135078
pudp
pseudouridine 5'-phosphatase
chr25_+_13620555 0.04 ENSDART00000163642
si:ch211-172l8.4
si:ch211-172l8.4
chr17_-_28707898 0.04 ENSDART00000135752
ENSDART00000061853
ap4s1
adaptor-related protein complex 4, sigma 1 subunit
chr14_+_44804326 0.04 ENSDART00000079866
ENSDART00000172974
slc30a9
solute carrier family 30 (zinc transporter), member 9
chr16_+_41060161 0.04 ENSDART00000141130
scap
SREBF chaperone
chr5_-_24270989 0.04 ENSDART00000146251
si:ch211-137i24.12
si:ch211-137i24.12
chr24_+_15655233 0.04 ENSDART00000143160
fbxo15
F-box protein 15
chr18_+_31056645 0.04 ENSDART00000159316
mvda
mevalonate (diphospho) decarboxylase a
chr1_+_26105141 0.04 ENSDART00000102379
ENSDART00000127154
toporsa
topoisomerase I binding, arginine/serine-rich a
chr11_-_7156620 0.04 ENSDART00000172823
ENSDART00000172879
ENSDART00000078916
smim7
small integral membrane protein 7
chr22_+_21950838 0.04 ENSDART00000143075
gna15.4
guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4
chr21_-_3770636 0.04 ENSDART00000053596
scamp1
secretory carrier membrane protein 1
chr19_-_10324573 0.03 ENSDART00000171795
u2af2b
U2 small nuclear RNA auxiliary factor 2b
chr15_+_3674765 0.03 ENSDART00000081802
NEK3
NIMA related kinase 3
chr10_-_36244864 0.03 ENSDART00000123748
or109-1
odorant receptor, family D, subfamily 109, member 1
chr7_+_73649686 0.03 ENSDART00000185589
PCP4L1
si:dkey-46i9.1
chr7_+_4694924 0.02 ENSDART00000144873
si:ch211-225k7.3
si:ch211-225k7.3
chr21_-_22737228 0.02 ENSDART00000151366
fbxo40.2
F-box protein 40, tandem duplicate 2
chr19_+_4051535 0.02 ENSDART00000167084
btr24
bloodthirsty-related gene family, member 24
chr5_+_25317061 0.02 ENSDART00000170097
trpm6
transient receptor potential cation channel, subfamily M, member 6
chr17_+_15882533 0.02 ENSDART00000164124
gabrr2a
gamma-aminobutyric acid (GABA) A receptor, rho 2a
chr19_-_10324182 0.02 ENSDART00000151352
ENSDART00000151162
ENSDART00000023571
u2af2b
U2 small nuclear RNA auxiliary factor 2b
chr18_+_23218980 0.02 ENSDART00000185014
mef2aa
myocyte enhancer factor 2aa
chr18_-_8857137 0.02 ENSDART00000126331
prrt4
proline-rich transmembrane protein 4
chr7_+_4194055 0.02 ENSDART00000105073
si:dkey-28d5.14
si:dkey-28d5.14
chr25_-_3217115 0.02 ENSDART00000032390
gtf2h1
general transcription factor IIH, polypeptide 1
chr1_+_19933065 0.01 ENSDART00000161573
apbb2b
amyloid beta (A4) precursor protein-binding, family B, member 2b
chr16_-_26296477 0.01 ENSDART00000157553
erfl1
Ets2 repressor factor like 1
chr7_+_5007310 0.01 ENSDART00000146083
si:ch211-272h9.3
si:ch211-272h9.3
chr7_+_4854690 0.01 ENSDART00000131645
si:dkey-28d5.7
si:dkey-28d5.7
chr5_+_38900249 0.01 ENSDART00000097856
fras1
Fraser extracellular matrix complex subunit 1
chr16_-_43233509 0.01 ENSDART00000025877
cldn12
claudin 12
chr15_-_46718759 0.01 ENSDART00000085926
ENSDART00000154577
zgc:162872
zgc:162872
chr11_+_37265692 0.01 ENSDART00000184691
il17rc
interleukin 17 receptor C
chr10_-_22491353 0.01 ENSDART00000180783
ENSDART00000159564
epob
erythropoietin b
chr7_+_4592867 0.01 ENSDART00000192614
si:dkey-83f18.15
si:dkey-83f18.15
chr18_-_39200557 0.01 ENSDART00000132367
ENSDART00000183672
si:ch211-235f12.2
mapk6
si:ch211-235f12.2
mitogen-activated protein kinase 6
chr22_-_38819603 0.01 ENSDART00000104437
si:ch211-262h13.5
si:ch211-262h13.5
chr7_-_24373662 0.01 ENSDART00000173865
PTGR1 (1 of many)
si:dkey-11k2.7
chr7_+_4219234 0.01 ENSDART00000187891
ENSDART00000173246
ENSDART00000172808
si:ch211-63p21.4
si:ch211-63p21.4
chr6_+_39290777 0.00 ENSDART00000155700
si:dkey-195m11.11
si:dkey-195m11.11
chr3_-_18711288 0.00 ENSDART00000183885
grid2ipa
glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein, a
chr19_-_25693728 0.00 ENSDART00000136187
bloc1s4
biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino
chr3_-_48559906 0.00 ENSDART00000160370
atp5pd
ATP synthase peripheral stalk subunit d
chr4_+_64339299 0.00 ENSDART00000191590
si:ch211-223a21.1
si:ch211-223a21.1
chr20_+_38671894 0.00 ENSDART00000146544
mpv17
MpV17 mitochondrial inner membrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd10a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0000212 meiotic spindle organization(GO:0000212)
0.1 0.4 GO:0051661 maintenance of centrosome location(GO:0051661)
0.1 0.3 GO:0036265 RNA (guanine-N7)-methylation(GO:0036265)
0.1 0.3 GO:0008592 regulation of Toll signaling pathway(GO:0008592)
0.0 0.3 GO:0030579 ubiquitin-dependent SMAD protein catabolic process(GO:0030579)
0.0 0.4 GO:0055129 proline biosynthetic process(GO:0006561) L-proline biosynthetic process(GO:0055129)
0.0 0.2 GO:0032289 central nervous system myelin formation(GO:0032289)
0.0 0.3 GO:0021979 hypothalamus cell differentiation(GO:0021979)
0.0 0.1 GO:0000338 protein deneddylation(GO:0000338)
0.0 0.1 GO:0040016 embryonic cleavage(GO:0040016)
0.0 0.2 GO:0016486 peptide hormone processing(GO:0016486)
0.0 0.2 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.1 GO:0097340 inhibition of cysteine-type endopeptidase activity(GO:0097340) zymogen inhibition(GO:0097341)
0.0 0.3 GO:0006828 manganese ion transport(GO:0006828)
0.0 0.2 GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process(GO:0036092)
0.0 0.1 GO:0032933 response to sterol depletion(GO:0006991) SREBP signaling pathway(GO:0032933) cellular response to sterol depletion(GO:0071501)
0.0 0.0 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.2 GO:0009749 response to glucose(GO:0009749)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0070545 PeBoW complex(GO:0070545)
0.1 0.4 GO:0031616 spindle pole centrosome(GO:0031616)
0.0 0.3 GO:0043527 tRNA methyltransferase complex(GO:0043527)
0.0 0.1 GO:0044609 DBIRD complex(GO:0044609)
0.0 0.3 GO:1990589 ATF4-CREB1 transcription factor complex(GO:1990589)
0.0 0.9 GO:0005876 spindle microtubule(GO:0005876)
0.0 0.1 GO:0030893 meiotic cohesin complex(GO:0030893)
0.0 0.3 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.1 0.9 GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) cysteine-type endopeptidase regulator activity involved in apoptotic process(GO:0043028)
0.1 0.2 GO:0004373 glycogen (starch) synthase activity(GO:0004373)
0.0 0.2 GO:1990756 protein binding, bridging involved in substrate recognition for ubiquitination(GO:1990756)
0.0 0.4 GO:0035198 miRNA binding(GO:0035198)
0.0 0.1 GO:0003985 acetyl-CoA C-acetyltransferase activity(GO:0003985)
0.0 0.2 GO:0000026 alpha-1,2-mannosyltransferase activity(GO:0000026)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.1 GO:0032052 bile acid binding(GO:0032052)
0.0 0.3 GO:0016423 tRNA (guanine) methyltransferase activity(GO:0016423)
0.0 0.1 GO:0016427 tRNA (cytosine) methyltransferase activity(GO:0016427)
0.0 0.3 GO:0015279 store-operated calcium channel activity(GO:0015279)
0.0 0.1 GO:0010859 calcium-dependent cysteine-type endopeptidase inhibitor activity(GO:0010859)
0.0 0.2 GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity(GO:0035005)
0.0 0.2 GO:0000828 inositol hexakisphosphate kinase activity(GO:0000828)
0.0 0.1 GO:0008743 L-threonine 3-dehydrogenase activity(GO:0008743)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME TGF BETA RECEPTOR SIGNALING IN EMT EPITHELIAL TO MESENCHYMAL TRANSITION Genes involved in TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
0.0 0.4 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.1 REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS Genes involved in Tandem pore domain potassium channels
0.0 0.3 REACTOME NUCLEAR EVENTS KINASE AND TRANSCRIPTION FACTOR ACTIVATION Genes involved in Nuclear Events (kinase and transcription factor activation)