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PRJNA438478: RNAseq of wild type zebrafish germline

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Results for hoxd3a

Z-value: 0.24

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Transcription factors associated with hoxd3a

Gene Symbol Gene ID Gene Info
hoxd3a
ENSDARG00000059280 homeobox D3a

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
hoxd3adr11_v1_chr9_-_1939232_19392320.484.2e-02Click!

Activity profile of hoxd3a motif

Sorted Z-values of hoxd3a motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr20_-_7072487 0.47 ENSDART00000145954
si:ch211-121a2.2
si:ch211-121a2.2
chr11_-_40728380 0.41 ENSDART00000023745
ccdc114
coiled-coil domain containing 114
chr12_+_24952902 0.36 ENSDART00000189086
ENSDART00000014868
calm3a
calmodulin 3a (phosphorylase kinase, delta)
chr20_-_14925281 0.31 ENSDART00000152641
dnm3a
dynamin 3a
chr20_-_14924858 0.27 ENSDART00000047039
dnm3a
dynamin 3a
chr10_+_39084354 0.23 ENSDART00000158245
si:ch73-1a9.3
si:ch73-1a9.3
chr16_+_5251768 0.20 ENSDART00000144558
plecb
plectin b
chr3_+_30500968 0.17 ENSDART00000103447
si:dkey-13n23.3
si:dkey-13n23.3
chr10_+_6884627 0.17 ENSDART00000125262
ENSDART00000121729
ENSDART00000105384
ddx4
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
chr10_-_26744131 0.17 ENSDART00000020096
ENSDART00000162710
ENSDART00000179853
fgf13b
fibroblast growth factor 13b
chr5_+_66353589 0.16 ENSDART00000138246
si:ch211-261c8.5
si:ch211-261c8.5
chr6_-_57539141 0.16 ENSDART00000156967
itcha
itchy E3 ubiquitin protein ligase a
chr6_+_3280939 0.13 ENSDART00000151359
kdm4aa
lysine (K)-specific demethylase 4A, genome duplicate a
chr19_-_6988837 0.13 ENSDART00000145741
ENSDART00000167640
znf384l
zinc finger protein 384 like
chr14_+_30762131 0.12 ENSDART00000145039
si:ch211-145o7.3
si:ch211-145o7.3
chr13_-_31435137 0.11 ENSDART00000057441
rtn1a
reticulon 1a
chr20_-_46362606 0.11 ENSDART00000153087
bmf2
BCL2 modifying factor 2
chr10_-_5847655 0.11 ENSDART00000192773
ankrd55
ankyrin repeat domain 55
chr20_+_539852 0.11 ENSDART00000185994
dse
dermatan sulfate epimerase
chr18_+_3037998 0.11 ENSDART00000185844
ENSDART00000162657
rps3
ribosomal protein S3
chr10_+_39091353 0.11 ENSDART00000125986
si:ch73-1a9.4
si:ch73-1a9.4
chr7_-_48667056 0.10 ENSDART00000006378
cdkn1ca
cyclin-dependent kinase inhibitor 1Ca
chr19_-_27462720 0.10 ENSDART00000135901
si:ch73-25f10.6
si:ch73-25f10.6
chr5_+_30384554 0.10 ENSDART00000135483
zgc:158412
zgc:158412
chr4_+_58576146 0.09 ENSDART00000164911
si:ch211-212k5.4
si:ch211-212k5.4
chr6_+_41191482 0.08 ENSDART00000000877
opn1mw3
opsin 1 (cone pigments), medium-wave-sensitive, 3
chr9_-_21918963 0.08 ENSDART00000090782
lmo7a
LIM domain 7a
chr20_-_9095105 0.08 ENSDART00000140792
oma1
OMA1 zinc metallopeptidase
chr15_+_31899312 0.08 ENSDART00000155315
frya
furry homolog a (Drosophila)
chr1_-_50859053 0.08 ENSDART00000132779
ENSDART00000137648
si:dkeyp-123h10.2
si:dkeyp-123h10.2
chr14_-_2933185 0.07 ENSDART00000161677
ENSDART00000162446
ENSDART00000109378
si:dkey-201i24.6
si:dkey-201i24.6
chr8_+_17078692 0.07 ENSDART00000023206
plk2b
polo-like kinase 2b (Drosophila)
chr8_-_31107537 0.07 ENSDART00000098925
vgll4l
vestigial like 4 like
chr15_+_5360407 0.06 ENSDART00000110420
or112-1
odorant receptor, family A, subfamily 112, member 1
chr15_+_15856178 0.06 ENSDART00000080338
dusp14
dual specificity phosphatase 14
chr8_+_41037541 0.06 ENSDART00000129344
gpat2
glycerol-3-phosphate acyltransferase 2, mitochondrial
chr2_+_54327160 0.06 ENSDART00000182320
LO018508.1

chr10_+_11355841 0.05 ENSDART00000193067
ENSDART00000064215
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
chr8_-_39822917 0.05 ENSDART00000067843
zgc:162025
zgc:162025
chr4_+_47636303 0.05 ENSDART00000167272
ENSDART00000166961
BX324142.1

chr18_+_17827149 0.05 ENSDART00000190237
ENSDART00000189345
ZNF423
si:ch211-216l23.1
chr19_+_2631565 0.05 ENSDART00000171487
fam126a
family with sequence similarity 126, member A
chr12_+_30265802 0.05 ENSDART00000182412
afap1l2
actin filament associated protein 1-like 2
chr17_-_29311835 0.04 ENSDART00000104224
tecpr2
tectonin beta-propeller repeat containing 2
chr17_-_37054959 0.04 ENSDART00000151921
dnmt3ab
DNA (cytosine-5-)-methyltransferase 3 alpha b
chr22_-_209741 0.04 ENSDART00000171954
ora1
olfactory receptor class A related 1
chr25_+_29160102 0.04 ENSDART00000162854
pkmb
pyruvate kinase M1/2b
chr1_+_52392511 0.03 ENSDART00000144025
si:ch211-217k17.8
si:ch211-217k17.8
chr21_-_37790727 0.03 ENSDART00000162907
gabrb4
gamma-aminobutyric acid (GABA) A receptor, beta 4
chr16_+_31804590 0.03 ENSDART00000167321
wnt4b
wingless-type MMTV integration site family, member 4b
chr9_+_22364997 0.03 ENSDART00000188054
ENSDART00000046116
crygs3
crystallin, gamma S3
chr1_-_40911332 0.03 ENSDART00000027463
hmx4
H6 family homeobox 4
chr5_-_38094130 0.03 ENSDART00000131831
si:ch211-284e13.4
si:ch211-284e13.4
chr21_+_8427059 0.03 ENSDART00000143151
dennd1a
DENN/MADD domain containing 1A
chr19_-_14155781 0.03 ENSDART00000169232
nr0b2b
nuclear receptor subfamily 0, group B, member 2b
chr13_-_44630111 0.03 ENSDART00000110092
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1
chr21_-_35419486 0.02 ENSDART00000138529
si:dkeyp-23e4.3
si:dkeyp-23e4.3
chr10_-_41400049 0.02 ENSDART00000009838
gpat4
glycerol-3-phosphate acyltransferase 4
chr14_+_5385855 0.02 ENSDART00000031508
lbx2
ladybird homeobox 2
chr8_-_50888806 0.02 ENSDART00000053750
acsl2
acyl-CoA synthetase long chain family member 2
chr15_-_35252522 0.02 ENSDART00000144153
ENSDART00000059195
mff
mitochondrial fission factor
chr5_-_28109416 0.02 ENSDART00000042002
si:ch211-48m9.1
si:ch211-48m9.1
chr22_-_10117918 0.01 ENSDART00000177475
ENSDART00000128590
rdh5
retinol dehydrogenase 5 (11-cis/9-cis)
chr7_+_24165371 0.01 ENSDART00000173472
si:ch211-216p19.5
si:ch211-216p19.5
chr15_+_41027466 0.01 ENSDART00000075940
mtnr1ba
melatonin receptor type 1Ba
chr19_-_10971230 0.01 ENSDART00000166196
LO018584.1

chr20_+_35484070 0.01 ENSDART00000026234
ENSDART00000141675
mep1a.2
meprin A, alpha (PABA peptide hydrolase), tandem duplicate 2
chr23_+_579893 0.01 ENSDART00000189098
BX323461.1

chr10_+_7593185 0.00 ENSDART00000162617
ENSDART00000162590
ENSDART00000171744
ppp2cb
protein phosphatase 2, catalytic subunit, beta isozyme
chr18_-_42333428 0.00 ENSDART00000034225
cntn5
contactin 5
chr10_-_40484531 0.00 ENSDART00000142464
ENSDART00000180318
taar20z
trace amine associated receptor 20z
chr20_-_49704915 0.00 ENSDART00000189232
COX7A2 (1 of many)
cytochrome c oxidase subunit 7A2
chr4_+_73085993 0.00 ENSDART00000165749
si:ch73-170d6.2
si:ch73-170d6.2
chr20_+_29209615 0.00 ENSDART00000062350
katnbl1
katanin p80 subunit B-like 1

Network of associatons between targets according to the STRING database.

First level regulatory network of hoxd3a

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.1 GO:0030205 dermatan sulfate metabolic process(GO:0030205)
0.0 0.0 GO:0032757 interleukin-8 production(GO:0032637) regulation of interleukin-8 production(GO:0032677) positive regulation of interleukin-8 production(GO:0032757)
0.0 0.1 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.2 GO:1905150 regulation of voltage-gated sodium channel activity(GO:1905150)
0.0 0.2 GO:0031581 hemidesmosome assembly(GO:0031581)
0.0 0.1 GO:1990845 adaptive thermogenesis(GO:1990845)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.6 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.0 0.2 GO:0030056 hemidesmosome(GO:0030056)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0047757 chondroitin-glucuronate 5-epimerase activity(GO:0047757)
0.0 0.2 GO:0030506 ankyrin binding(GO:0030506)
0.0 0.1 GO:0001223 transcription coactivator binding(GO:0001223)
0.0 0.0 GO:0072545 tyrosine binding(GO:0072545)
0.0 0.1 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.0 0.2 GO:0031492 nucleosomal DNA binding(GO:0031492)